genome.fa.s2244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2244
Parameters: 2 7 7 80 10 50 1000
Length:  73858

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5598--5653	21	2.7	20	78	10	51	50	7	12	30	1.67
6339--6457	31	3.5	31	69	22	96	26	15	14	43	1.84
6370--6424	20	2.8	20	82	0	74	32	10	14	41	1.81
6441--6491	20	2.5	20	90	0	75	33	7	15	43	1.76
6318--6526	71	2.9	71	95	0	373	28	14	14	42	1.85
10366--10407	21	2.0	21	86	9	59	59	0	7	33	1.25
15832--15886	20	2.8	20	100	0	110	38	10	18	32	1.85
15849--15990	51	2.8	51	85	1	185	39	14	16	29	1.88
19518--19641	50	2.5	50	84	4	142	24	20	15	39	1.91
19583--19727	79	1.8	78	83	1	191	28	26	11	33	1.91
19549--19859	131	2.4	129	87	4	421	29	24	10	35	1.89
19714--20019	79	3.9	79	81	3	339	29	27	11	32	1.91
21641--21688	25	2.0	25	87	4	71	83	6	2	8	0.88
21647--21684	20	1.9	20	89	10	60	84	5	2	7	0.86
22671--23266	61	9.8	61	86	1	779	25	27	18	28	1.98
22658--23266	242	2.5	240	86	2	815	25	27	18	28	1.98
25794--26173	79	4.8	77	78	6	341	27	24	13	35	1.93
25794--26182	158	2.5	158	80	5	430	26	23	13	35	1.92
29452--29572	52	2.3	52	95	0	215	28	18	17	35	1.93
29444--29592	52	2.9	51	87	6	203	31	16	16	34	1.92
29581--29605	13	1.9	13	100	0	50	36	16	16	32	1.90
29670--29694	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29648--29714	33	2.0	33	88	0	98	40	13	11	34	1.81
30515--30673	49	3.1	49	76	6	147	35	15	23	24	1.94
30282--30838	171	3.2	171	88	3	739	36	14	24	23	1.93
30752--33356	49	53.6	49	77	11	2271	32	17	25	24	1.97
31358--31577	122	1.9	114	82	10	277	35	15	25	24	1.94
31404--31790	171	2.2	173	93	1	679	36	14	23	24	1.93
31638--33356	101	17.4	101	95	2	2824	32	17	25	24	1.96
33361--33458	33	3.0	33	92	7	164	17	18	36	27	1.93
33472--34065	34	17.7	33	89	6	824	29	12	36	21	1.90
33464--34065	66	9.0	66	92	4	910	30	12	36	21	1.90
33472--34065	134	4.4	132	92	3	910	29	12	36	21	1.90
34042--34153	30	3.7	30	92	1	170	28	19	26	25	1.99
35090--35121	13	2.5	13	94	0	55	0	3	3	93	0.40
35097--35123	14	1.9	14	100	0	54	0	0	7	92	0.38
39134--39176	21	2.0	21	100	0	86	27	20	23	27	1.99
42407--42526	52	2.3	52	97	0	222	29	17	18	35	1.94
42407--42546	52	2.7	51	90	4	210	30	17	18	33	1.94
42535--42559	13	1.9	13	100	0	50	36	16	16	32	1.90
42624--42648	13	1.9	13	100	0	50	32	16	16	36	1.90
42602--42668	33	2.0	33	88	0	98	40	13	11	34	1.81
43766--43809	20	2.1	21	88	12	65	29	18	11	40	1.85
47398--47549	59	2.6	59	84	5	177	28	15	12	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47536--47789	116	2.2	115	85	4	325	27	13	12	46	1.79
47353--47789	57	7.6	58	74	10	306	27	13	12	45	1.80
53292--53345	20	2.7	20	88	8	74	29	16	12	40	1.86
54023--54242	61	3.8	60	72	11	188	37	13	24	24	1.91
54085--54349	52	5.0	52	76	9	221	38	15	23	23	1.93
54024--54300	113	2.5	113	84	1	340	37	14	23	24	1.92
54214--54353	50	2.8	50	86	3	174	39	16	21	22	1.92
54423--55173	32	23.5	32	81	5	706	19	17	32	31	1.94
54419--55132	258	2.8	253	80	9	792	19	17	32	30	1.95
55211--55273	30	2.1	30	87	0	90	42	12	23	20	1.86
55264--55430	34	5.2	33	68	15	107	34	14	29	20	1.93
55206--55438	64	3.6	63	83	7	249	36	13	29	20	1.91
55283--55396	30	3.7	30	75	17	124	29	17	28	23	1.97
55206--55438	128	1.8	129	79	8	278	36	13	29	20	1.91
55908--55987	20	3.9	20	75	12	63	35	17	11	36	1.86
59779--59881	51	2.0	51	100	0	206	37	19	17	25	1.93
65426--65617	52	3.7	52	85	2	215	43	11	14	31	1.80
65673--65726	20	2.7	20	88	8	74	31	14	11	42	1.81
66079--66137	25	2.5	23	81	13	66	47	1	3	47	1.29
67400--67450	21	2.4	21	80	9	59	78	1	11	7	1.04

Tables:   1

The End!