genome.fa.s2245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2245
Parameters: 2 7 7 80 10 50 1000
Length:  31058

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2767--2805	20	2.0	20	89	0	60	35	5	17	41	1.72
7164--7190	1	27.0	1	100	0	54	100	0	0	0	0.00
7199--7255	21	2.7	21	97	0	105	33	10	19	36	1.86
7311--7378	19	3.9	19	78	21	85	35	11	14	38	1.83
7332--7356	13	1.9	13	100	0	50	36	16	16	32	1.90
7313--7375	32	2.0	32	96	0	117	34	12	15	36	1.86
7418--7443	13	2.0	13	100	0	52	30	15	15	38	1.88
7398--7464	33	2.0	33	88	0	98	25	14	16	43	1.86
9801--10082	102	2.8	102	84	6	365	29	25	12	32	1.92
9801--10088	153	1.9	153	82	5	359	28	26	12	32	1.92
9802--10088	51	5.6	50	83	4	308	28	26	12	32	1.92
22651--22687	11	3.4	11	96	0	65	91	5	2	0	0.48
22648--22713	15	4.3	15	77	11	71	86	4	9	0	0.70
22648--22697	16	3.2	16	82	5	66	90	6	4	0	0.57
22648--22697	1	50.0	1	79	0	55	90	6	4	0	0.57
23678--24900	55	22.3	55	92	3	1809	29	29	20	20	1.98
24219--24305	26	3.4	25	66	19	70	29	31	18	20	1.96
24681--24828	29	5.3	29	59	18	71	28	31	18	21	1.97
25495--25525	1	31.0	1	100	0	62	100	0	0	0	0.00
25531--25587	21	2.7	21	97	0	105	33	10	19	36	1.86
25643--25710	19	3.9	19	78	21	85	35	11	14	38	1.83
25664--25688	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25645--25707	32	2.0	32	96	0	117	34	12	15	36	1.86
25750--25775	13	2.0	13	100	0	52	30	15	15	38	1.88
25730--25796	33	2.0	33	88	0	98	25	14	16	43	1.86
28121--28402	52	5.5	51	79	7	259	28	25	12	33	1.92
28342--28489	77	1.9	76	85	6	201	23	27	15	33	1.95
30019--30195	30	5.9	30	80	12	148	24	27	15	32	1.95
30019--30192	63	2.9	62	78	13	164	24	27	14	33	1.95
30036--30254	29	7.5	29	75	14	139	26	27	15	30	1.96
30143--30249	28	3.9	28	82	6	121	32	27	17	22	1.96
30251--30798	33	16.7	34	75	13	436	19	29	11	38	1.88
30261--30751	136	3.7	136	78	10	461	20	30	12	37	1.89

Tables:   1

The End!