Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2248
Parameters: 2 7 7 80 10 50 1000
Length:  51742

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3840--3913
20
3.8
20
72
1
69
41
10
12
35
1.77
4830--4946
32
3.7
31
82
8
123
22
18
30
28
1.97
4834--4954
63
1.9
63
83
9
158
21
19
30
28
1.97
4834--4973
31
4.6
32
80
11
134
22
19
30
27
1.98
4921--5085
28
5.9
29
84
5
171
24
17
28
29
1.97
4940--5302
56
6.6
56
75
12
301
25
19
26
28
1.99
4940--5085
28
5.2
28
85
4
172
24
19
27
28
1.98
5097--5320
28
7.9
28
78
10
204
25
19
26
27
1.99
4997--5186
101
1.9
100
84
5
258
26
21
24
26
1.99
5098--5321
86
2.6
86
81
6
269
26
19
26
27
1.99
5331--5386
26
2.2
26
80
6
60
42
17
7
32
1.77
6616--6660
15
3.1
15
84
6
58
4
0
8
86
0.69
6616--6658
18
2.3
18
88
8
59
4
0
9
86
0.71
6616--6667
20
2.6
19
84
9
59
3
1
9
84
0.82
21533--21651
52
2.3
51
94
1
202
30
17
17
34
1.93
21660--21684
13
1.9
13
100
0
50
36
16
16
32
1.90
21725--21791
33
2.0
33
88
0
98
40
13
11
34
1.81
21747--21771
13
1.9
13
100
0
50
32
16
16
36
1.90
22604--22815
52
4.2
52
75
12
199
33
16
25
24
1.96
22711--22800
43
2.1
43
91
0
144
30
17
25
26
1.98
22835--22974
30
4.9
29
86
6
187
20
17
30
32
1.95
22806--22974
85
2.0
86
82
4
207
20
17
30
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22804--22974
30
5.9
29
84
7
177
21
17
30
30
1.96
23011--23098
30
3.0
30
83
3
106
23
17
34
25
1.96
24528--24616
1
89.0
1
75
0
52
2
4
8
84
0.84
24528--24586
10
5.7
10
77
18
59
1
3
8
86
0.75
24528--24616
17
5.2
16
76
19
74
2
4
8
84
0.84
24528--24616
25
3.5
24
78
19
92
2
4
8
84
0.84
24548--24617
28
2.4
28
81
9
79
1
5
10
82
0.88
34303--34329
10
2.7
10
100
0
54
77
22
0
0
0.76
38472--38590
52
2.3
51
94
1
202
30
17
17
34
1.93
38599--38623
13
1.9
13
100
0
50
36
16
16
32
1.90
38664--38730
33
2.0
33
88
0
98
40
13
11
34
1.81
38686--38710
13
1.9
13
100
0
50
32
16
16
36
1.90
39149--39186
17
2.4
17
91
8
62
55
0
2
42
1.14
39500--39552
28
1.9
27
84
3
70
30
5
9
54
1.55
41720--41759
13
3.1
13
88
0
62
52
0
5
42
1.23
41990--42050
25
2.6
24
80
17
74
54
0
8
37
1.31
41995--42044
24
2.0
26
84
7
68
50
0
10
40
1.36
43047--43205
89
1.8
85
83
5
210
50
12
3
32
1.58

Tables:   1

The End!