Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2258
Parameters: 2 7 7 80 10 50 1000
Length:  84157

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4261--4337
17
4.8
16
75
13
77
48
1
1
49
1.17
4288--4337
14
3.3
14
75
20
55
50
0
0
50
1.00
4290--4337
15
2.9
17
80
20
66
50
0
0
50
1.00
4317--4397
40
2.0
40
80
7
92
34
0
2
62
1.08
5432--5464
13
2.6
13
90
4
50
0
24
0
75
0.80
10307--10345
2
19.5
2
100
0
78
51
0
0
48
1.00
11773--11803
3
10.3
3
92
0
53
29
0
3
67
1.06
11985--12022
2
19.0
2
100
0
76
50
0
0
50
1.00
12299--12362
8
7.8
8
77
18
51
53
1
0
45
1.10
13053--13110
22
2.7
22
83
2
73
43
1
1
53
1.21
14224--14307
41
2.1
40
86
6
116
53
2
5
38
1.38
19098--19130
2
16.5
2
100
0
66
51
0
48
0
1.00
21812--21975
79
2.1
78
80
7
181
37
9
14
38
1.79
21943--22017
35
2.1
35
82
4
89
38
1
12
48
1.49
22047--22088
19
2.2
20
86
4
59
47
0
4
47
1.23
31346--31400
20
2.9
18
84
12
67
38
1
0
60
1.08
31343--31402
19
3.0
21
79
13
65
40
1
0
58
1.08
32654--32687
2
17.5
2
93
6
61
50
0
0
50
1.00
32778--32836
21
2.7
21
82
10
66
45
1
0
52
1.10
32826--32892
19
3.6
19
70
20
52
43
1
1
53
1.19
32987--33062
21
3.7
20
75
19
68
59
1
0
39
1.06
32987--33067
40
2.1
39
86
6
110
59
1
0
39
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32987--33064
30
2.7
29
91
2
120
58
1
0
39
1.06
33413--33464
28
1.9
26
88
7
77
34
0
0
65
0.93
34678--34726
26
1.9
25
83
4
62
65
2
0
32
1.04
39913--39955
22
2.0
22
100
0
86
27
0
23
48
1.51
39915--39963
22
2.2
22
85
7
64
32
0
24
42
1.55
39932--40094
77
2.1
77
96
3
310
45
5
8
40
1.58
42617--42690
23
3.1
24
76
9
71
51
1
0
47
1.09
42818--42873
9
6.0
9
74
15
51
55
0
0
44
0.99
42830--42870
20
1.9
22
85
14
59
53
0
0
46
1.00
44293--44334
21
2.0
22
90
9
70
28
0
4
66
1.12
46342--46369
14
2.0
14
100
0
56
42
0
0
57
0.99
47033--47089
21
2.6
22
75
13
64
59
0
0
40
0.97
47038--47134
19
5.0
20
72
18
80
56
0
2
41
1.11
47052--47141
9
10.8
8
71
21
69
56
0
2
41
1.11
47031--47138
26
4.2
27
68
18
70
58
0
1
39
1.09
50586--50611
2
13.0
2
100
0
52
50
0
0
50
1.00
53616--53676
13
4.8
12
73
13
50
36
0
0
63
0.94
55755--55781
14
1.9
14
100
0
54
44
25
7
22
1.79
57339--57375
9
4.4
9
80
19
53
32
56
10
0
1.34
57340--57368
15
1.9
15
100
0
58
34
55
10
0
1.34
57283--57569
72
4.0
72
81
6
312
27
51
9
11
1.68
57393--57442
21
2.4
21
79
0
55
30
58
8
4
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57283--57486
69
2.9
70
88
3
286
26
51
9
11
1.69
57300--57513
69
3.1
68
79
9
182
27
52
8
11
1.66
57313--57561
75
3.4
75
80
5
219
27
52
8
11
1.66
62970--63061
17
5.1
17
67
23
53
67
0
1
31
0.98
63252--63347
50
1.9
49
81
12
115
53
0
0
46
1.00
63753--63791
17
2.3
17
81
0
51
41
0
0
58
0.98
63806--63837
17
1.9
16
93
6
55
50
0
0
50
1.00
64047--64112
18
3.6
18
80
10
64
40
0
0
59
0.98
64049--64108
30
2.1
27
82
14
68
38
0
0
61
0.96
64045--64127
27
2.9
29
74
18
86
40
0
0
59
0.98
72269--72307
9
4.4
9
83
6
53
87
2
10
0
0.65
72269--72308
16
2.5
16
87
0
53
85
2
12
0
0.71
73347--73384
3
12.7
3
94
0
67
34
2
0
63
1.09
73650--73741
24
3.7
24
75
8
69
65
0
1
33
1.00
73900--73933
17
2.0
17
88
11
52
58
0
0
41
0.98
73990--74032
12
3.6
11
82
14
50
62
0
0
37
0.95
73984--74044
21
2.9
21
80
14
63
62
1
0
36
1.05
81248--81303
20
2.6
23
75
21
66
33
0
0
66
0.92
81268--81308
14
3.1
14
72
13
50
39
0
0
60
0.96

Tables:   1

The End!