Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2259
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 410483
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 1 of 3
Found at i:1320 original size:474 final size:477
Alignment explanation
Indices: 1--5167 Score: 5548
Period size: 474 Copynumber: 11.0 Consensus size: 477
* * * * * ** * *
1 AAAGCTCATCTCTCAAATAAGATAAACATCGATTCTCGCAATAGTCTCCATTATTTTCAGGATTG
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* * * ** *
66 GGAACCTAAAACATATTCCTTTCATTAGGATACATGACTCATACATGCTTTGGTGTCATAAGGAA
66 GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAAA
* * * *
131 AGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTTTTCTGTTAAATAAGACAAAGTTGAAT
131 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACTTGAAT
* * * * *
196 ACTCAAACCAATCCCCACTCTTTTCGAGATTAGGCACCATAAACTTAGTGTTCTCATTGGGATAC
195 ACTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAAC-TAGTCTTCTCATTAGGATAC
* ** * * *
261 ATGATGCTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCCACCAATTTTTATAAAGTCTAAGT
259 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGT
* * *
326 TCGTGTCTCAGAA-GAGACAAACATGTATTCTAGTAATGATC--CATTCATTTTGTGATTAGGCT
324 TCGTGCCTCA-AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * *
388 CTATAAGCAGATTCTCCTC---GGGATTAGTGATATTGAAGATTTTCTTTTG--TGCGAAAATCT
388 CTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATG-G-AAATCT
*
448 TTTCTTTGCCCTATTTTCCCTAAAATC
451 TTTCTTTGCCCTATTTTCCTTAAAATC
* * * * ** * * * ** *
475 AAAGTTTATCTCTTTAATAAGACAAGCATCAATTCTTGTACCA-TCCCCTTTCCTTTCAAGATTA
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* * * * ** ** *
539 GGAACC-AAAACCACATTCCATTCATTAGGATGCA-CA-ACTTTGATGCTTTGGCATCGTAAGAA
66 GGAACCTAAAA-CACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAA
* * ** * * * *
601 AAGCTTTTCTTTCCACCATTTTTGATACAAAGAAAGTTTGCCTCTTAAATAAGATAAGCATGAAT
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAAT
* * * * *
666 AATCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATTGTCTTCTCTTTAGGATAC
195 ACTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAAC-TAGTCTTCTCATTAGGATAC
* * * *
731 ATGATATTGATGCTTTGGTTTCTCTAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGC
259 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAG-
* * * *
796 TT-GTGCCTCATACGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCA
323 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * **
860 CTATAAGCACATTCTTCTCATTAGGATAAATGATATTGATGACTTTCTTTT-CCCGGAAATCTTT
388 CTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTT
*
924 TCTTTGCCCTATTTT-CTTCAAATC
453 TCTTTGCCCTATTTTCCTTAAAATC
* * * * * * *
948 AAAGCTCATCCCATAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCA-TATTTTCAGGATTG
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* *
1012 GGAACCTAAAACACATTCCCTTCACTAGGATACATGCCACATACATGCTTTGGTGTCGCAAGAAA
66 GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAAA
* * *
1077 AGCTTTT-TTT-CACCGTTTTTGATAGAATCAAAGTTTGTCTCTGAAATAAGACAAGCTTGAGTA
131 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATA
* * * * *
1140 CTCATA-TCAGTACCCATTCTTTTCGAGATTTGGCACCATAAACTCAATCTTCTCATTGGGATAC
196 CTCATACT-AATCCCCATTCTTTTCGAGATTAGGCACCATAAACT-AGTCTTCTCATTAGGATAC
* * * * ** *
1204 ACGATACTAATGCTTTTGGTTTCACAAGAAAGGGTTTTTCCTTACCAATTTTTATAAAGTCTAAG
259 ACGATATTGATGC-TTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAG
** * * *
1269 TTCACGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCA
323 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* *
1334 CTATAAGCACATTCTCCTCAATAGGATAAGTGATA-TGATGATTTT-TTTTGCTTGGAAATCTTT
388 CTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTT
*
1397 TCTTTACCCTATTTTCCTT-AAATC
453 TCTTTGCCCTATTTTCCTTAAAATC
* *
1421 AAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAACAGTCTTCATTATTTTCAAGATTG
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* * * *
1486 GGATCCTAAAACACATTTCCTTTATTAGGATACATGACGCATACATGCTTTGGTGTCGCAAGAAA
66 GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAAA
*
1551 AGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATA
131 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATA
* * * * *
1616 CTCATACCAATACCCATTCTTTGCGGGATTAGGCACCATAAACTTAGTCTTCTCATTTGGATACA
196 CTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAAC-TAGTCTTCTCATTAGGATACA
* * * * * * * *
1681 TGATACTAATGCTTTCGTTTCACAAGAAAGG-TTTTTCCCTACCAATTTTTATAAAGTCTACGTT
260 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * *
1745 CGTTCCTCAAGTGAGACAAACATGGATTCTAGTAACGATCTTCATTCACTTTGTGATTAGGCACC
325 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* *
1810 ATAAGCACATTCTCCTGATTAGGATAAGTGATATTGATGATTTTTTTTTGCATGGAAATCTTTTC
390 ATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
* *
1875 TTCGCTCTATTTTCCTTAAAATC
455 TTTGCCCTATTTTCCTTAAAATC
* * ** *
1898 AAAGTTCATCCCTTAAATAAGACAAACATCGATTTTCATATTAGTCTCCATTATTTTCAGGATTG
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* * * * * *
1963 GGATCCAAAAACACATTCCCTTCACTAGGATACATGACATATGCATGCTTTAGTGTCGCAAGAAA
66 GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAAA
* * * *
2028 AGCTTTTCTTTTCACCGTTTTTCATAGAATCAACGTTTGTCTCTTAAATAAGACAAACTTGAACA
131 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATA
* * * * *
2093 CTCATACCAATACCCATTCTTTTC-AGGACTAGGCACCATAAACTTAGTCTTCTCATTTGGATGC
196 CTCATACTAATCCCCATTCTTTTCGA-GATTAGGCACCATAAAC-TAGTCTTCTCATTAGGATAC
* * * * *
2157 ACGATACTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTCCCCACCAATTTCTATAAAGTCTAAGT
259 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGT
* * * *
2222 TCGTGTCTTAAATGAGACAAACTTGTATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
324 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
*
2287 TATAAGCACATTCACCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
389 TATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
* *
2352 CTTTGCCCTATTTTCGTCAAAATC
454 CTTTGCCCTATTTTCCTTAAAATC
* * *
2376 AAACGTT--T-TCTATAAATAAGATAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGAT
1 AAA-GTTCATCCCT-TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGAT
* * * **
2438 TAGGAACCTAAAACACATTCCCTTCATTAGGATACAAGATATCA-A-A-GCTTAAGTG-CAG-AA
64 TGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACA-CATACATGCTTTGGTGTC-GCAA
* * * * * *
2498 GAAAAGCTTTTGTCTCCACCGCTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAAATAAACATT
127 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TT
* * * * * * *
2563 -AATAATCATGC-AATTCCCCTTTCTTTTCGGGATTAGGCTCCATAAACATTGTCTTCTCATAAG
191 GAATACTCATACTAA-TCCCCATTCTTTTCGAGATTAGGCACCATAAAC-TAGTCTTCTCATTAG
* * * **
2626 GATACACGATATTGATGCTTTGGTTTTGCATGAAAAGCTTTCTT-CCTGCCAATTTTCT-TAAAG
254 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCCACCAATTTT-TGTAAAG
* * * * * * * *
2689 TCTATGTTCATGCCTCAAATGAGCCAAACATTGATTCTATTACTGATCTTCATTCTTTTTTTGAT
317 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * **
2754 TAGGCACTATACA-CACATCCTCCTCTTTTGGATAAAAGATATTGATGATTTTCTTTTGCATGGA
382 TAGGCACTATA-AGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGA
* * *
2818 TATCTTTACTATGCCCTATTTTCCTTAAAATC
446 AATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
2850 AAAGTTCAT--CTTGAAAAAAGACTAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGA-T
1 AAAGTTCATCCCTT-AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATT
* * * * * *
2912 GTGGAACC-AAAACAGATTTCATTCTTTATGATACATGACAC-T-GATGCTTTGGTGTCGCAAGA
65 G-GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGA
* *
2974 AAAGCTTTTTTTTACACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATT-A
129 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TTGA
* ***
3038 ATGCTCATACTAATCTGTATTCTTTT--AGTATTAGGCACCAT-AA--A-------C-TTA-G-T
193 ATACTCATACTAATCCCCATTCTTTTCGAG-ATTAGGCACCATAAACTAGTCTTCTCATTAGGAT
** * * *
3088 ACGTGATATTGATGTTTTAGTTTCGCAAGAAAGGCATTTTT-CCAACCAATTTTTGTAAAGTCTA
257 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCCACCAATTTTTGTAAAGTCTA
* * *
3152 AGTTTGTGCCTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
321 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* ** * * *
3217 CACTATAAAG-A-AGTTATTTTCATTAGGATAAATGATATTGATGATTTTCTTTTGTATGCAAAT
386 CACTAT-AAGCACA-TTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAAT
3280 C--TT-TTT----T-TTTT-C-----ATC
449 CTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
3295 ------CA----TTAAA-AA-A-AAGCATCGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTA
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* * * * *** *
3347 GGAA-CGAAAACCACATTCCTTTCAATGGGATACATG--ACATTGGTGCTTTGGTGTCACAAGAA
66 GGAACCTAAAA-CACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAA
* * * * * * * *
3409 AGGCTTTTCTTTCTATCATTTTTGATATAATCAAAGTTTATCTCTTAAATAAAACAAACATGAAT
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAAT
* * * ** * **
3474 AGTCATGCTAATCCCTATT-TTTTTTAGGATTAGGCACCAAAAACGTAGTCTTCTCAACAGGATA
195 ACTCATACTAATCCCCATTCTTTTCGA-GATTAGGCACCATAAAC-TAGTCTTCTCATTAGGATA
* * * * * * * * * *
3538 CGCAATATTCATGTTTTTGTTTCGCAAGAAAGGCATTTT-CCTATCAATTTTCGTAAAGTTTAAG
258 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAG
* ** * * *
3602 TTCGTGCCTTAAATGAGACAAATGTGGACTCTAGTAATGATCTTTAGTCATTTTGTGATTAGGCA
323 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * * *
3667 CTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATTATTTTCTTTTCCGTGGAAATCTTT
388 CTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTT
3732 TCTTTGCCCTATTTTCCTTAAAATC
453 TCTTTGCCCTATTTTCCTTAAAATC
* * *
3757 AAAGTTCAT-CCTATAAATAAGACAAGCATCAATTCTCATAACAATCTCCATTCTTTTCAAGATT
1 AAAGTTCATCCCT-TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATT
* * * * * * * * *
3821 GGGAACC-AAAAGCACAATCCCTTCAGTAGAATAAATGATA-AT-GATACTTTGGGGTCACAAGA
65 GGGAACCTAAAA-CACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGA
** * * *
3883 AAAGCTTTT-TTTCCACCGTTTTTGACGGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATAAA
129 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAA
* * * * *
3947 TAGTCATACTAATCCCCATTCTTTT-TAGGATTAGGCAACATAAACATAGTCCTCTCAATAGGAT
194 TACTCATACTAATCCCCATTCTTTTCGA-GATTAGGCACCATAAAC-TAGTCTTCTCATTAGGAT
* * * * *
4011 ACGCGATATTGCTGTTTTGGTTTCACAAGAAAGGCATTTTT-CCCACCAATTTTTGTAAAGTTTA
257 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCCACCAATTTTTGTAAAGTCTA
* * * *
4075 AGTCCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGG
321 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
*
4140 CACTATAAGCACATTCTCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCT
386 CACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCT
* *
4205 TTTCTTTGCCTTGTTTTCCTTAAAATC
451 TTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * *
4232 AAACTTCATCCCTTAAATAAGATACGCATCGATTCTCATAACAATCTCCAATATTTTCAGGATTT
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
* * **
4297 GGAACCTAAAACACATTCCCTCCATTAGCATACATG--ACATTGATGCTTTGGTGTCGCAAGAAA
66 GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAAA
* * *
4360 AGCTTTTCTTTCCACCATTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTCAAC
131 AGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAAT
* * * *
4425 ACTCATACTAATCCCCTTTTTTTTTCGGGAATAGGCACCATAAACTTAGTCTTCTCATTAGGACT
195 ACTCATACTAATCCCC-ATTCTTTTCGAGATTAGGCACCATAAAC-TAGTCTTCTCATTAGGA-T
* *
4490 -CACAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCACACCAATTTTTGTAAAGTCTAA
257 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAA
* * * * * * *
4554 GTTCATGTCTTAAATAAGACAAACGTGGATTCTAGTGATGATCTTCATTCATTTTGTGGTTAGGC
322 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * ** **
4619 ACTATAAGCACATTCTCC-CTATAAGGATAAATGATATTGATGATTTTCTTTTGCATAAAAAAAT
387 ACTATAAGCACATTCTCCTC-ATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCT
*
4683 TATCTTTGCCCTATTTTCCTTAAAATC
451 TTTCTTTGCCCTATTTTCCTTAAAATC
* * * * ** *
4710 AAAGTTTATCCCTTAAATAAGCCAAGCATTGATTATTGTAATAGTCTCCATTATTTTC-AGCATT
1 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAG-ATT
* *
4774 GGGAACCTAAAACAGATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGTAAGAA
65 GGGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAA
* * * *
4839 AAGCTTTTCTTTCCACTGTTTTTGAGAGAATCGAAGTTTGTCTCTTAAATAAGACAAA-TATGAT
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACT-TGAA
* * * * * *
4903 TACTTATACTAATTCCCATTCTTTGC-ATGGTTAAGAACCATAAACATAGTCTTCTCATTAGGAT
194 TACTCATACTAATCCCCATTCTTTTCGA-GATTAGGCACCATAAAC-TAGTCTTCTCATTAGGAT
* * * * * * *
4967 ACATGATATTTATGCTTTGATTTCGCAAGAAAGGCTTTCTACCCCCCCAAATTTTGTTAAGTCTA
257 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCCACCAATTTTTGTAAAGTCTA
* *
5032 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGG
321 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * *
5097 CACTATAAGCACGTTCTCCTCATTAGGATAAGTGATATTGATGATTTT-ATTTGCATGAAAATCT
386 CACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCT
5161 TTTCTTT
451 TTTCTTT
5168 AAAAAGACAA
Statistics
Matches: 3951, Mismatches: 610, Indels: 260
0.82 0.13 0.05
Matches are distributed among these distances:
432 3 0.00
433 50 0.01
434 106 0.03
435 14 0.00
436 6 0.00
437 2 0.00
439 3 0.00
445 3 0.00
446 1 0.00
447 4 0.00
448 131 0.03
449 33 0.01
450 3 0.00
451 7 0.00
452 1 0.00
455 1 0.00
456 6 0.00
457 2 0.00
458 2 0.00
459 153 0.04
460 5 0.00
461 2 0.00
462 4 0.00
468 2 0.00
469 1 0.00
470 165 0.04
471 52 0.01
472 56 0.01
473 357 0.09
474 946 0.24
475 465 0.12
476 170 0.04
477 414 0.10
478 563 0.14
479 178 0.05
480 40 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (477 bp):
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTG
GGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGCAAGAAA
AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATA
CTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACTAGTCTTCTCATTAGGATACAC
GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTC
GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
TAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
TTGCCCTATTTTCCTTAAAATC
Found at i:4648 original size:478 final size:476
Alignment explanation
Indices: 3289--5167 Score: 2190
Period size: 478 Copynumber: 3.9 Consensus size: 476
3279 TCTTTTTTTT
* * * * * *
3289 TTCATCCATTAAA-AA-A-AAGCATCGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTAGGAA
1 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTGGGAA
* * * * * *
3351 -CGAAAACCACATTCCTTTCAATGGGATACATGACATTGGTGCTTTGGTGTCACAAGAAAGGCTT
66 CCTAAAACCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
* * * * * * *
3415 TTCTTTCTATCATTTTTGATATAATCAAAGTTTATCTCTTAAATAAAACAAACATGAATAGTCAT
131 TTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* * * * *
3480 GCTAAT-CCCTATTTTTTTTAGGATTAGGCACCAAAAACGTAGTCTTCTCAACAGGATACGCAAT
196 ACTAATCCCCT-TTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAATAGGATACACAAT
* * * * * * * * *
3544 ATTCATGTTTTTGTTTCGCAAGAAAGGCATTTTCCTATCAATTTTCGTAAAGTTTAAGTTCGTGC
260 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* ** * * *
3609 CTTAAATGAGACAAATGTGGACTCTAGTAATGATCTTTAGTCATTTTGTGATTAGGCACTATAAG
325 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAG
* * * * *
3674 CACATTCTCCTTATTAGGATAAATGATATTGATTATTTTCTTTTCCGTGGAAATCTTTTCTTTGC
390 CACATTCTCCCTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
3739 CCTATTTTCCTTAAAATCAAAG
455 CCTATTTTCCTTAAAATCAAAG
* *
3761 TTCAT-CCTATAAATAAGACAAGCATCAATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGA
1 TTCATCCCT-TAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTGGGA
* * * * * * * * *
3825 ACC-AAAAGCACAATCCCTTCAGTAGAATAAATGATAATGATACTTTGGGGTCACAAGAAAAGCT
65 ACCTAAAACCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* ** * * *
3889 TTT-TTTCCACCGTTTTTGACGGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATAAATAGTCA
130 TTTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * * * * *
3953 TACTAATCCCCATTCTTTTTAGGATTAGGCAACATAAACATAGTCCTCTCAATAGGATACGCGAT
195 TACTAATCCCCTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAATAGGATACACAAT
* * * * *
4018 ATTGCTGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTTTAAGTCCATG
260 ATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* *
4083 CCTCAAATGAGACAAATATGGATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCACTATAA
324 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* *
4148 GCACATTCTCCTCT-TTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
389 GCACATTCTCC-CTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * *
4212 GCCTTGTTTTCCTTAAAATCAAAC
453 GCCCTATTTTCCTTAAAATCAAAG
* * * * *
4236 TTCATCCCTTAAATAAGATACGCATCGATTCTCATAACAATCTCCAATATTTTCAGGATTTGGAA
1 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTGGGAA
* * *
4301 CCTAAAA-CACATTCCCTCCATTAGCATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
66 CCTAAAACCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
* * *
4365 TTCTTTCCACCATTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTCAACACTCA
131 TTCTTTCCACC-TTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * * *
4430 TACTAATCCCCTTTTTTTTTCGGGAATAGGCACCATAAACTTAGTCTTCTCATTAGGACT-CACA
195 TACTAATCCCCTTTTTTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCAATAGGA-TACACA
4494 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCACACCAATTTTTGTAAAGTCTAAGTTCA
258 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCA
* * * * * *
4559 TGTCTTAAATAAGACAAACGTGGATTCTAGTGATGATCTTCATTCATTTTGTGGTTAGGCACTAT
322 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * ** *
4624 AAGCACATTCTCCCTATAAGGATAAATGATATTGATGATTTTCTTTTGCATAAAAAAATTATCTT
387 AAGCACATTCTCCCTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
4689 TGCCCTATTTTCCTTAAAATCAAAG
452 TGCCCTATTTTCCTTAAAATCAAAG
* * * * ** * *
4714 TTTATCCCTTAAATAAGCCAAGCATTGATTATTGTAATAGTCTCCATTATTTTC-AGCATTGGGA
1 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAG-ATTGGGA
* ** **
4778 ACCTAAAA-CAGATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCGTAAGAAAAG
65 ACCTAAAACCACATTCCCTTCATTAGGATACATG--ACATTGATGCTTTGGTGTCACAAGAAAAG
* * * *
4842 CTTTTCTTTCCA-CTGTTTTTGAGAGAATCGAAGTTTGTCTCTTAAATAAGACAAATATGATTAC
128 CTTTTCTTTCCACCT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * ** * * *
4906 TTATACTAATTCCCATTCTTTGCATGG-TTAAGAACCATAAACATAGTCTTCTCATTAGGATACA
192 TCATACTAATCCCCTTTTTTTTTA-GGATTAGGCACCATAAACATAGTCTTCTCAATAGGATACA
** * * * * * *
4970 TGATATTTATGCTTTGATTTCGCAAGAAAGGCTTTCTACCCCCCCAAATTTTGTTAAGTCTAAGT
256 CAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-T-TCCCACCAATTTTTGTAAAGTCTAAGT
** *
5035 TTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCAC
319 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * *
5100 TATAAGCACGTTCT-CCTCATTAGGATAAGTGATATTGATGATTTT-ATTTGCATGAAAATCTTT
384 TATAAGCACATTCTCCCT-ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
5163 TCTTT
448 TCTTT
5168 AAAAAGACAA
Statistics
Matches: 1200, Mismatches: 182, Indels: 44
0.84 0.13 0.03
Matches are distributed among these distances:
471 2 0.00
472 9 0.01
473 2 0.00
474 128 0.11
475 367 0.31
476 17 0.01
477 74 0.06
478 382 0.32
479 179 0.15
480 40 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTGGGAA
CCTAAAACCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
TTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
ACTAATCCCCTTTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAATAGGATACACAATA
TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGC
ACATTCTCCCTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAG
Found at i:6949 original size:42 final size:42
Alignment explanation
Indices: 6870--6952 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
6860 TAAGAGGAAT
* * * * *
6870 GATAGGAAAAGAGATAAGAGAGGTAGTGGAGATAGAAGGGAC
1 GATAAGAAAAGAGATAAGAGAGATAATAGAGAGAGAAGGGAC
*
6912 GATAAGAAGAGAGATAAGAGAGATAATAGAGAGAGAAGGGA
1 GATAAGAAAAGAGATAAGAGAGATAATAGAGAGAGAAGGGA
6953 TGACAAAAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.49, C:0.01, G:0.39, T:0.11
Consensus pattern (42 bp):
GATAAGAAAAGAGATAAGAGAGATAATAGAGAGAGAAGGGAC
Found at i:14796 original size:42 final size:42
Alignment explanation
Indices: 14741--14859 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
14731 TTCTTCTCTC
* *
14741 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
14783 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
14825 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
14860 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:14800 original size:12 final size:11
Alignment explanation
Indices: 14774--14849 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
14764 TCTATTATCT
*
14774 CTCCTGTCTCTC
1 CTCCTATCTC-C
14786 CTCCTATCATCC
1 CTCCTATC-TCC
14798 CTCCTATCT--
1 CTCCTATCTCC
*
14807 CTACTATCT--
1 CTCCTATCTCC
*
14816 CTCCTGTCTCTC
1 CTCCTATCTC-C
14828 CTCCTATCATCC
1 CTCCTATC-TCC
*
14840 CTCCTCTCTC
1 CTCCTATCTC
14850 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:14801 original size:24 final size:24
Alignment explanation
Indices: 14765--14850 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
14755 CCTCCTCTCT
* *
14765 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
14789 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
14810 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
14831 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
14851 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:14825 original size:18 final size:18
Alignment explanation
Indices: 14756--14826 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
14746 CCTGTCATCC
* *
14756 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
14774 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
14796 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
14816 CTCCTGTCTCT
1 CTCCTGTCTCT
14827 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:18091 original size:10 final size:10
Alignment explanation
Indices: 18072--18102 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
18062 AATCTCATTT
18072 TCACTGTTCA
1 TCACTGTTCA
*
18082 TCACTATTCA
1 TCACTGTTCA
18092 TCACTGTTCA
1 TCACTGTTCA
18102 T
1 T
18103 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:18142 original size:42 final size:42
Alignment explanation
Indices: 18090--18169 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
18080 CATCACTATT
*
18090 CATCACTGTTCATGTATCGATACATTGTGAATACTATCAATA
1 CATCACTGTTCATGTATCGATACATTATGAATACTATCAATA
* * *
18132 CATCATTGTTCATGTATTGATACATTATGAATAGTATC
1 CATCACTGTTCATGTATCGATACATTATGAATACTATC
18170 GATATATTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (42 bp):
CATCACTGTTCATGTATCGATACATTATGAATACTATCAATA
Found at i:18173 original size:20 final size:20
Alignment explanation
Indices: 18103--18173 Score: 54
Period size: 20 Copynumber: 3.5 Consensus size: 20
18093 CACTGTTCAT
*
18103 GTATCGATACATTGTGAATA
1 GTATCGATACATTATGAATA
* * * *
18123 CTATCAATACATCATTG-TTCA
1 GTATCGATACATTA-TGAAT-A
*
18144 TGTATTGATACATTATGAATA
1 -GTATCGATACATTATGAATA
18165 GTATCGATA
1 GTATCGATA
18174 TATTGAGTTT
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
20 19 0.53
21 6 0.17
22 11 0.31
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (20 bp):
GTATCGATACATTATGAATA
Found at i:20721 original size:476 final size:475
Alignment explanation
Indices: 19924--22481 Score: 3100
Period size: 476 Copynumber: 5.4 Consensus size: 475
19914 ATCAATATGT
* *
19924 GATATTGATGTTTTGATTTCGC----AAGGCA-TTTTCCCACCAATTTTTCTAAAGTCTAAGTTC
1 GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
** *
19984 GTGCCTTGAATGAGACAAACAT-TATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
66 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * *
20048 TAAGCATATTCTCCTCAGTAGGATAAATGATATTGATGATTTTTTTAT--ATGGAAATATTTTCT
131 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCT
*
20111 TTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAAAAGACAAGCATCGATTCTCGTAACAG
196 TTGCCCTATTTTCCTTAAAATC-AAGTTTATCCCTTAAAAAGACAAGCATCGATTCTCGTAACAG
* ** * *
20176 TCTCCAATCTTTTCAAGATTGGGAACCAAAAACTTATTCCCTTCATTAGGATACATAACATTAAT
260 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* *
20241 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGTTAGAATCAAAGTTTGTCTCTTA
325 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
*
20306 AATAAGACAAACATGAATAGTCATACTAATCCCCA-TCTTTTCAGGAGCATAGTCACCATAAACA
390 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAG-ATAGGCACCATAAACA
*
20370 TAGTCTTCTCATTAGGATACGC
454 TAGTCTTCTCATTAGGATACAC
* ** * *** * * *
20392 AATATTGATGTTTTTATTTCACAAGAAAGGCATTTTTCTTGCCAATTTTTGTAAAGCCAAAGTTT
1 GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
20457 GTGCATCAAATGAGACAAACATTGATTCTAGCAATGATTTTCATTCATTTTGTGATTAGGCATTA
66 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * *
20522 TAAACACATTCTCCTTATTAAGATAAATGATATTGATGATTTTTTTTTGCATGGAAATATTTT-T
131 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCT
* * *
20586 GTTGCCCTATTTTCCTTAAAATCATAGTTTATCTCTTAAATAAGACAAACATC-AGTTCTTGTAA
196 -TTGCCCTATTTTCCTTAAAATCA-AGTTTATCCCTTAAA-AAGACAAGCATCGA-TTCTCGTAA
* * * * * * *
20650 CAGTCTTCATTATTTTCAAGATT-GAAACCAAAAACACAATCCTTTCGTTAGAATACATGACATT
257 CAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
20714 TATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTGTCTC
322 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * *
20779 TTAAATAAGACAATCATGAATAGTCATACTAATCCCCATTCTTTTTCAGGA-TTAGGCATCATAA
387 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCAGGAGATAGGCACCATAA
* * *
20843 ATATAGTCTTCTCATTAGAATACAT
451 ACATAGTCTTCTCATTAGGATACAC
* ** * * *
20868 GATACTGATGTTTTGGTTTCATAAGAAAGGCATTTTTCCCACCAAATTTTGTAAAATCTAAGTCC
1 GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
** * *
20933 GTGCCTCAAATGAG-CTAAACATGGATTCTAGTGTTGATCTTCATTCATTTTGCGATCAGGCACT
66 GTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* *
20997 AT-AA-ACATT-TTCTCATTCGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTC
130 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTC
*
21059 TTTGCCCTATTTTCCTT-AAAT-AAG---A---C-----AAG-C-A-C--CAATTCTCGTAACAG
195 TTTGCCCTATTTTCCTTAAAATCAAGTTTATCCCTTAAAAAGACAAGCATCGATTCTCGTAACAG
* * *
21106 T-TCGCCTTCTTTTC-AGAATTAGGAACCAAAAACACATTCCCTTCATTATGATACATGACATTG
260 TCTC-CATTCTTTTCAAG-ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
21169 ATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
21234 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-GG-GATAAGGCACCATAAA
388 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAGAT-AGGCACCATAAA
* * *
21297 CGTAGTCTCCTCATAAGGATACAC
452 CATAGTCTTCTCATTAGGATACAC
* *
21321 GATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTTTAAGTT
1 GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * * * *
21385 TGTGCCTCAAATGAGCCAAATATGGATTCTAGTAATAATCTTCATTAATTTTGTGATTTGGTACT
65 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * *
21450 ATAAACACATTCTCTTTATTAGGATAAATGATATTGATGA-TTTTTTTTACGT-AGAAATCTTTT
130 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGA-AAATC-TTT
* * *
21513 TTTTTGCCCTATTTTCCTTAAAATCAAAGTTTA-CCACGTAAATAAGACAAGCATCGATTCTCAT
193 TCTTTGCCCTATTTTCCTTAAAATC-AAGTTTATCC-CTTAAA-AAGACAAGCATCGATTCTCGT
*
21577 AACAGTC-CCTATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGAC
255 AACAGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * *
21641 ATTGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
319 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
21706 CTCTTAAATAAGACAAACTTTAATACTCATACTAATCCCCATT-TTTT-ACGG-GATTAGGCACC
384 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA-GGAGA-TAGGCACC
* * *
21768 ATAAACTTAGTTTTCTCATT-GGAATACAT
447 ATAAACATAGTCTTCTCATTAGG-ATACAC
* *
21797 GATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCCACCAATTTTTGTAAAGTCCAAGTT
1 GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTT-CCCACCAATTTTTGTAAAGTCTAAGTT
* * * * *
21861 CATGCCTCAAATCAGACAACCATGGATTCTAGTAATGATCTTTATTC-TTTTAGTGATTAGGCAT
65 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTAGGCAC
* * * * * * * * * *
21925 TGTTAGCACTTTCTCCACCTTACGATAAGTGATATTGATGATTTTCTTTTGCACGAAAATCTTTT
129 TATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTT
* * *
21990 TTTTGCCCTATTTTCCTTAAAATCAATGTTTATCCCTTAAAAAGATAAGCATCGATTCTCATAAC
194 CTTTGCCCTATTTTCCTTAAAATCAA-GTTTATCCCTTAAAAAGACAAGCATCGATTCTCGTAAC
* * * * * *** *
22055 AATTTCCATT-TTTTCAAAATTGGGAACTATAAGTGCATTCCCTTCATTAGTATACATGACATTG
258 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * *
22119 ATGCCTTGGTGTTAG-AAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAGTTTGTCTC
323 ATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * *
22183 TTAAATAAGATAAATATGAATAGTCAAACTAATCCCCATTCTTTTCAGGA-TTAGGCACCATAAA
387 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAGATAGGCACCATAAA
* *
22247 CATTGTCTTC-CGTTAGGATACAC
452 CATAGTCTTCTCATTAGGATACAC
* *
22270 GATACTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAATTTTGTAAAGTCTAAGTTC
1 GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* ** * ** * *
22335 GTGCCTCAAATGAGCCAAACATGGATTCTAGTCTTGATCTTTATTCATTTTGCAATCAAGCACTA
66 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
*
22400 TAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCT
131 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCT
22465 TTGCCCTATTTTCCTTA
196 TTGCCCTATTTTCCTTA
22482 TATATGACAA
Statistics
Matches: 1789, Mismatches: 231, Indels: 135
0.83 0.11 0.06
Matches are distributed among these distances:
452 9 0.01
453 165 0.09
454 139 0.08
455 21 0.01
456 46 0.03
457 5 0.00
458 3 0.00
459 3 0.00
462 1 0.00
464 1 0.00
465 1 0.00
467 1 0.00
468 19 0.01
470 2 0.00
471 4 0.00
472 11 0.01
473 289 0.16
474 257 0.14
475 56 0.03
476 687 0.38
477 59 0.03
478 10 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (475 bp):
GATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCT
TTGCCCTATTTTCCTTAAAATCAAGTTTATCCCTTAAAAAGACAAGCATCGATTCTCGTAACAGT
CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAGATAGGCACCATAAACATA
GTCTTCTCATTAGGATACAC
Found at i:21830 original size:159 final size:159
Alignment explanation
Indices: 21123--22297 Score: 589
Period size: 159 Copynumber: 7.4 Consensus size: 159
21113 TCTTTTCAGA
* * * * * *
21123 ATTAGGAACCAAAAACACATTCCCTTCATTATGATACATGACATTGATGCTTTGGTGTCGCGAGA
1 ATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
* *
21188 AAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
66 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* *
21253 TAGTCATACTAATCCCCATTCTTTTCGGG
131 TACTCATACTAATCCCCATTATTTTCGGG
* ** * * *
21282 ATAAGGCACCATAAACGTAGTCTCC-TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 ATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG
* * ** * * *
21346 AAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTTTAAGTTTGTGCCTC--AAATGAGCCAAAT
65 AAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAG-TT-TGCCTCTTAAATAAGACAAAC
* * * ** *
21406 ATGGATTCT-AGTAATAATCTTCATTAATTTT-GTG
126 ATGAATACTCA-TACTAATCCCCATT-ATTTTCGGG
* * * * * * * ** *
21440 ATTTGGTACTATAAACACATTCTCTTTATTAGGATAAATGATATTGATGATTTTTTTTACG-TAG
1 ATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTTT-CGCAAG
* * * *** * * * * *
21504 -AAATCTTTTTTTTTGCC-CTATTTTCCTTAAAATCAAAGTTTACCACGTAAATAAGACAAGCAT
65 AAAAGC-TTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * * * **
21567 CG-ATTCTCATAAC-AGTCCCTATTCTTTTCAAG
128 -GAATACTCAT-ACTAATCCCCATTATTTTCGGG
* * * * * * * *
21599 ATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGTAAGA
1 ATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
* * *
21664 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTTAA
66 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
21729 TACTCATACTAATCCCCATT-TTTTACGGG
131 TACTCATACTAATCCCCATTATTTT-CGGG
** **
21758 ATTAGGCACCATAAACTTAGTTTTC-TCATT-GGAATACATGATATTGATGCTTTGGTTTCGCAA
1 ATTAGGCACCATAAACACA-TTCCCTTCATTAGG-ATACATGATATTGATGCTTTGGTTTCGCAA
* ** * * *
21821 GAAAGGCTTTT-TCCCCACCAATTTTTG-TA-AAGTCCAAGTTCATGCCTC--AAATCAGACAAC
64 GAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAA
* * * * *** * * *
21881 CATGGATTCT-AGTAATGATCTTTATTCTTTTAGTG
125 CATGAATACTCA-TACTAATCCCCATTATTTTCGGG
*** * * * * * * * ** * *
21916 ATTAGGCATTGTTAGCACTTTCTCC-ACCTTACGATA-AGTGATATTGATGATTTTCTTTTGCAC
1 ATTAGGCACCATAAACACATTC-CCTTCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAA
* * * *** * * * * *
21979 GAAAATCTTTTTTTTGCC-CTATTTTCCTTAAAATCAATGTTTATCC-CTTAAA-AAGATAAGCA
64 GAAAAGCTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTT-GCCTCTTAAATAAGACAAACA
* ** ***
22041 TCG-ATTCTCATAAC-AATTTCCATT-TTTTCAAA
127 T-GAATACTCAT-ACTAATCCCCATTATTTTCGGG
* * * *** * * * *
22073 ATTGGGAACTATAAGTGCATTCCCTTCATTAGTATACATGACATTGATGCCTTGGTGTTAG-AAG
1 ATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGT-TTCGCAAG
* * * *
22137 AAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGATAAATATGA
65 AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * *
22202 ATAGTCAAACTAATCCCCATTCTTTTCAGG
130 ATACTCATACTAATCCCCATTATTTTCGGG
** * * * *
22232 ATTAGGCACCAT-AA-ACATTGTCTTCCGTTAGGATACACGATACTGATGTTTTGGTTTCGCAAG
1 ATTAGGCACCATAAACACATTCCCTT-CATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG
22295 AAA
65 AAA
22298 GGCATTTTTC
Statistics
Matches: 735, Mismatches: 223, Indels: 117
0.68 0.21 0.11
Matches are distributed among these distances:
156 5 0.01
157 107 0.15
158 283 0.39
159 309 0.42
160 31 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (159 bp):
ATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA
AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
TACTCATACTAATCCCCATTATTTTCGGG
Found at i:23162 original size:688 final size:687
Alignment explanation
Indices: 21847--23201 Score: 1954
Period size: 688 Copynumber: 2.0 Consensus size: 687
21837 ACCAATTTTT
* * * *
21847 GTAAAGTCCAAGTTCATGCCTCAAATCAGACAACCATGGATTCTAGTAATGATCTTTATTCTTTT
1 GTAAAGTCAAAGTTCATGCCTCAAATCAGACAAACATCGATTCTAGTAATGATCTTCATTCTTTT
* * * * * *
21912 AGTGATTAGGCATTGTTAGCACTTTCTCCACCTTACGATAAGTGATATTGATGATTTTCTTTTGC
66 AGTGATTAGGCACTGTAAACACATTCTCCACATTACGATAAGTGATAATGATGATTTTCTTTTGC
*
21977 ACGAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAATGTTTATCCCTTAAAAAGATAAGCAT
131 ACGAAAATCTTTTTGTTGCCCTATTTTCCTTAAAATCAATGTTTATCCCTTAAAAAGATAAGCAT
* * *** * *
22042 CGATTCTCATAACAATTTCCATTTTTTCAAAATTGGGAACTATAAGTGCATTCCCTTCATTAGTA
196 CGATTCTCATAACAATTTCCATTTTTTCAAAATTGGAAACTAAAAACACAATCCCTTCATTAGAA
** * *
22107 TACATGACATTGATGCCTTGGTGTTAGAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCA
261 TACAAAACATTGATGCCTTAGTGTTAGAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
** * *
22172 AAGTTTGTCTCTTAAATAAGATAAATATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAG
326 AAAATTATCCCTTAAATAAGATAAATATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAG
*
22237 GCACCATAAACATTGTCTTCCGTTAGGATACACGATACTGATGTTTTGGTTTCGCAAGAAAGGCA
391 GCACCATAAACATAGTCTTCCGTTAGGATACACGATACTGATGTTTTGGTTTCGCAAGAAAGGCA
* *
22302 TTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGT
456 GTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACATGGATTCTAGT
* *
22367 CTTGATCTTTATTCATTTTGCAATCAAGCACTATAAACACATTCTTCTCATTAGGATAAATGATA
521 CTTGATCTTCATTCATTTTGCAATCAAGCACTATAAACACATTCTTCTCATTACGATAAATGATA
* * *
22432 TTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTATATATGACAAGCATC
586 TTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCGTAAATAAGACAAGCATC
* *
22497 GATTCTCGTAATAGTCCTCCTTCTTTTCAGAATTCTA
651 GATTCTCATAACAGTCCTCCTTCTTTTCAGAATTCTA
* * * * *
22534 GTAAAGTTAAAGTTCGTGCCTCAAATGAGACAAACGTCGATTCTAGTAATTATCTTCATTCATTT
1 GTAAAGTCAAAGTTCATGCCTCAAATCAGACAAACATCGATTCTAGTAATGATCTTCATTC-TTT
** *
22599 T-GTGATTAGGCACTGTAAACACATTCTCCTTATTAGGATATA-TGATAATGATGATTTTCTTTT
65 TAGTGATTAGGCACTGTAAACACATTCTCCACATTACGATA-AGTGATAATGATGATTTTCTTTT
* * *
22662 GCATGGAAATCTTTTTGTTGCCCTATTTTCCTTAAAAT-TATAGTTTATCCCTTAAATAAGATAA
129 GCACGAAAATCTTTTTGTTGCCCTATTTTCCTTAAAATCAAT-GTTTATCCCTTAAA-AAGATAA
** * * * *
22726 GCATCGATTCTTGTAACAGTTTTCATTCTTTTCAAGATTGGAAAC-AAAAACACAATCCTTTCAT
192 GCATCGATTCTCATAACAATTTCCATT-TTTTCAAAATTGGAAACTAAAAACACAATCCCTTCAT
* ***
22790 TAGAATACAAAACATTGATG-CTGTAGTG-TCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGAT
256 TAGAATACAAAACATTGATGCCT-TAGTGTTAG-AAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
22853 AGAATCAAAAATTATCCCTTAAATAAGA-CAATCATGAATAGTCATACTAATCCCCATTCTTTTC
319 AGAATCAAAAATTATCCCTTAAATAAGATAAAT-ATGAATAGTCAAACTAATCCCCATTCTTTTC
* *
22917 AGGATTAGGCACCATAAACATAGTCTTCTCGTTAGGATATACGATCCTGATGTTTTGGTTTCGCA
383 AGGATTAGGCACCATAAACATAGTCTTC-CGTTAGGATACACGATACTGATGTTTTGGTTTCGCA
*
22982 AGAAAGGCAGTTTTCTCACCAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACATG
447 AGAAAGGCAGTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACATG
* ** *
23047 GATTCTAGTGTTGATCTTCATTCATTTTGTGATCAGGCACTATAAACACATTCTTC-CAATTACG
512 GATTCTAGTCTTGATCTTCATTCATTTTGCAATCAAGCACTATAAACACATTCTTCTC-ATTACG
*
23111 ATAAATGATATTGATGA-TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCGTAAATAA
576 ATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCGTAAATAA
23175 GACAAGCATCGATTCTCATAACAGTCC
641 GACAAGCATCGATTCTCATAACAGTCC
23202 CTATTCTTTT
Statistics
Matches: 591, Mismatches: 67, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
686 2 0.00
687 159 0.27
688 246 0.42
689 184 0.31
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (687 bp):
GTAAAGTCAAAGTTCATGCCTCAAATCAGACAAACATCGATTCTAGTAATGATCTTCATTCTTTT
AGTGATTAGGCACTGTAAACACATTCTCCACATTACGATAAGTGATAATGATGATTTTCTTTTGC
ACGAAAATCTTTTTGTTGCCCTATTTTCCTTAAAATCAATGTTTATCCCTTAAAAAGATAAGCAT
CGATTCTCATAACAATTTCCATTTTTTCAAAATTGGAAACTAAAAACACAATCCCTTCATTAGAA
TACAAAACATTGATGCCTTAGTGTTAGAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
AAAATTATCCCTTAAATAAGATAAATATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAG
GCACCATAAACATAGTCTTCCGTTAGGATACACGATACTGATGTTTTGGTTTCGCAAGAAAGGCA
GTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACATGGATTCTAGT
CTTGATCTTCATTCATTTTGCAATCAAGCACTATAAACACATTCTTCTCATTACGATAAATGATA
TTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCGTAAATAAGACAAGCATC
GATTCTCATAACAGTCCTCCTTCTTTTCAGAATTCTA
Found at i:24129 original size:475 final size:475
Alignment explanation
Indices: 23168--26550 Score: 4066
Period size: 475 Copynumber: 7.1 Consensus size: 475
23158 CTATTTTTCG
* * * * * * *
23168 TAAATAAGACAAGCATCGATTCTCATAACAGTCCCTATTCTTTTCCAGATTGGGAACTAGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* *
23233 CATTCCCTTCATTAGAATACATGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCAC
66 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * *
23298 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * ** * ** *
23363 ATTCTTTTCAGGATAAGGCACCATTAACGTAGTCACCTTAAAAAGATACACGATATTGATGCTTT
196 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* ** * * *** *
23428 TGTTTTGCAAGAAAGGCTTTCTTCCCATAAATTTTTGTAAAGTTTAACTCCGTGCCTTAAATGAG
261 GGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAG
** * * * *
23493 -CTAAACATGGATTCTAGTTTTGATCTTTATTCATTTTGGGATTAGGCACTATAAACATATTCTC
325 AC-AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
* * * *
23557 CTCATTAGGATAAATGATATTGATGATTTTCTTTTACCTGAAAATCTTTTATTTGCCCTATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
** *
23622 CAGAAAATCAATGTTCATCCCT
454 CTTAAAATCAAAGTTCATCCCT
** * ** *
23644 TGGA-AAGACAAGCATCAATTCTCGTAAAAGTTTCCATTCGTTTCAAGATTGGGAACCAAAAATA
1 TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* * * *
23708 GATTCCCCTCATTAGGATACATGAGC-TTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCA
66 CATTCCCTTCATTAGGATACATGA-CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * ** *
23772 CCATTTTTGATAGAATCAAAGTTTATCTCTAAAATAAGACAAGCATGAATTGTCATACAAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* ** * *
23837 TATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACACGATATTGATGCGT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * *
23902 TGGTTTCG-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCATGCCTCAAAAGA
260 TGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
* * * * * *
23966 GCCAAACATGGATTCTAGTATTAATCTTTATTCATTTTGTGATTAGGCACTATAAGCCCATTCCC
324 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
* * * * * *
24031 CTCATCAGGAGAAATGATATTGAAGATTTT-TTTCTGCATTGAAATCATTTCTTTGCCATATTTT
389 CTCATTAGGATAAATGATATTGATGATTTTCTTT-TGCATGGAAATCTTTTCTTTGCCCTATTTT
24095 CCTTAAAATCAAAGTTCATCCCT
453 CCTTAAAATCAAAGTTCATCCCT
* * * * * * * *
24118 TAAATAAGACAACCATTGATTCGCGTAATAGTCCCCCTTCATTTT-AATATTGGGAGCCAAAAAC
1 TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTC-TTTTCAAGATTGGGAACCAAAAAT
* * * * * *
24182 ACATTCCTTTCACTAAGATACACGACCTTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTCCA
65 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * **
24247 CCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCTTACTGGTCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * * * * * *
24312 CATTATTTTCAAGAATAGGCACCATAAACATAGTCTTCACATTGGGATACACGATGTTGATGTTT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
** *
24377 TGGTTTTGCAAGAAAGGCATTTTTCCCATAAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATGA
260 TGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
** * *
24442 GACAAATGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACGATAAGCACATTCTC
324 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
*
24507 CTCATTAGGATAAATGATATTGATGATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* *
24572 CATAAAATAAAAGTTCATCCCT
454 CTTAAAATCAAAGTTCATCCCT
* * *
24594 TAAATAAGACGAGCATCG-TT-TCCTATAATAGTCCCCATTCTTTTCATGATTGGGAACC-AAAA
1 TAAATAAGACAAGCATCGATTCTCGTA-AA-AGTCCCCATTCTTTTCAAGATTGGGAACCAAAAA
* * * **
24656 TCACATTCCCATCAATAAGAGGCATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
64 T-ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * * * **
24721 CACCGTTTTTGATAGAATCAAAGCTTGCCTCTTAAATAAGACAAAACATGAATACTCTTACTGGT
128 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AAACATGAATACTCATACTAAT
* * * * * *
24786 CCCCATTATTTTCAAGAATAGGCACCATAAACATAGTCTTCACATTGGGATACACGATGTTGATG
192 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG
* ** *
24851 TTTTGGTTTTGCAAGAAAGGCATTTTTCCCATAAATTTTTGTAAAGTCAAAGTTTATGCCTCAAA
257 CTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
** * * * *
24916 TGAGACAAATGTGGATTCTAGTAATGATCTTCATTTATTTTGTGATTTGGCACGAGAAGCACATT
321 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATT
*
24981 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATT
386 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* *
25046 TTCCATAAAATAAAAGTTCATCCCT
451 TTCCTTAAAATCAAAGTTCATCCCT
* * *
25071 TAAATAAGACGAGCATCG-TT-TCCTATAATAGTCCCCATTCTTTTCATGATTGGGAACC-AAAA
1 TAAATAAGACAAGCATCGATTCTCGTA-AA-AGTCCCCATTCTTTTCAAGATTGGGAACCAAAAA
* * * **
25133 TCACATTCCCATCAATAAGAGGCATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
64 T-ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * *
25198 CACCGTTTTTGATAGAATCAAAGCTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATC
128 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * *
25263 CCTATTCTTTTCAAGATTAGGCACCATTAACATAGTCCTCTCATTAGGATACACGAT-TTGATGC
193 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* ** * * *
25327 TTTGGTTTAGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTTAAAA
258 TTTGGTTTTGCAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
* * * * * * *
25392 GAGCCAAACATGGATTCTAGTATTTATCTTCATTCAATTTGTGATTAGGCATTATAAGAACTTTC
322 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTC
* * * *
25457 TCCTCATTAGGATAAGTGATATTGATGATTTTTTTTTGTAAGGAAATCTTTTCTTTGCCCTATTT
387 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * *
25522 TCCTTAAAATTAAAGTTTATCCCA
452 TCCTTAAAATCAAAGTTCATCCCT
* * * * * *
25546 TAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAATG
1 TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* * * *** * * *
25611 CACTCCCTTCATTAGGATACACGACATTCATGCTTTGGTGTTGTAAGAAAAACCTTTCTTTCCAT
66 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * * * * * * *
25676 CATTTTTAACAAAATCAAAGTTTGTCTCTTAAACAAGGCAATCATGCATAGTCATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * *
25741 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATACTGATGTTTT
196 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* * * *
25806 GGTTTCGTAAGAAAGGCATTTTTCCCACCAATTTTTGGAAAGTCTAAGTTTATGCCTTAAATGAG
261 GGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAG
* *
25871 ACAAACATGGATTCTAGTAATGATCTTCCTT-AATTTGTGATTAGGCACTATAAGCACATTCTCC
325 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCC
* * * *
25935 TCATTAGAATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGGCCTA-TTTCC
390 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
25999 TTAAAATCAAAGTTCATCCCT
455 TTAAAATCAAAGTTCATCCCT
* * * * * * *
26020 TAAATAAGAC-AGCATCGATTCTCGTAATAGTCTCCATTATTTTCAGGATCGGGAACCTAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* * * ** *
26084 TATTCCCTTCATTAGGATACCTGACATTGATGCTTTGATGTTGCAAGAAAAGCTTTTCTTTTCAC
66 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * *
26149 CATTTTTGATAGAATAAAAGTTT-TCCTCTTAAATAAGACAAACTTGAATACTTATACTAATCCC
131 CATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * * * * *
26213 CATTCTTTTCGGGATTAGGCACCACAAACTTAGTCTTCTAATTGGGATACATGATATTGATGCTT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * *
26278 TGGTTTTGCAAGAAAAGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAATTTATGCCTCGAATGA
260 TGGTTTTGCAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
* * * * * *
26343 GACAAACATGGATTCTGGTAATAATCTTTATT-GTTTTGTGATTAGGCACTATTAGCAGATTCTC
324 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
* * * * * * * *
26407 CACCTTAGGATAAGTGATGTTGATGGTTTTCTTTTGTATGGAAATCTTTCCTTTGCCTTATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * *
26472 CTTAAAACCTAAGTTTATCCAT
454 CTTAAAATCAAAGTTCATCCCT
* * * *
26494 TAAATAAGACAAGCATTGATTCTCGTAATAGTCCCCATTTTTTTTAAGATTGGGAAC
1 TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAAC
26551 TGTAGACACC
Statistics
Matches: 2538, Mismatches: 345, Indels: 49
0.87 0.12 0.02
Matches are distributed among these distances:
472 6 0.00
473 365 0.14
474 249 0.10
475 954 0.38
476 475 0.19
477 489 0.19
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
GGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCT
CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGTTCATCCCT
Found at i:24379 original size:159 final size:159
Alignment explanation
Indices: 24198--26299 Score: 529
Period size: 159 Copynumber: 13.3 Consensus size: 159
24188 CTTTCACTAA
** * *
24198 GATACACGACCTTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* ** *
24263 CAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCTTACTGGTCCCCATTATTTTCAAGAAT
66 CAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCATTATTTTCAAGAAT
* * *
24328 AGGCACCATAAACATAGTCTTCACATTGG
131 AGGCACCATAAACACAGTCTCCACATTAG
* ** * * * ***
24357 GATACACGATGTTGATGTTTTGGTTTTGCAAGAAAGGCATTT-TTCCCATAAATTTTTG-TA-AA
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAA
* * * ** * * ** * ** **
24419 GTCAAAGTTTATGCCTCAAATGAGACAAATGTGGATTCTAGTAATGATCTTCATTCATTTT-GTG
65 -TCAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCATT-ATTTTCAAG
* * * * * *
24483 ATTTGGCACGATAAGCACATTCTCCTCATTAG
128 AATAGGCACCATAAACACAGTCTCCACATTAG
* * * ** * * * * * *
24515 GATAAATGATATTGATGATTTT-CTTTTTCATGGAAATCTTTTCTTTGC-CC-TATTTTCCATAA
1 GATACACGATATTGATG-TTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTT-GATAG
* * * * * * * *
24577 AATAAAAGTTCATCCCTTAAATAAGACGAGCATCG-TTTC-CTATAATAGTCCCCATTCTTTTCA
63 AATCAAAGTTTATCCCTTAAATAAGACAAACAT-GAATACTCT-TAATGGTCCCCATTATTTTCA
* * * * * * *
24640 TGATTGGGAACCA-AAATCACATTC-CCATCAATAA
126 AGAATAGGCACCATAAA-CACAGTCTCCA-CATTAG
** * * * *
24674 GAGGCATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * *
24739 CAAAGCTT-GCCTCTTAAATAAGACAAAACATGAATACTCTTACTGGTCCCCATTATTTTCAAGA
66 CAAAGTTTATCC-CTTAAATAAGAC-AAACATGAATACTCTTAATGGTCCCCATTATTTTCAAGA
* * *
24803 ATAGGCACCATAAACATAGTCTTCACATTGG
129 ATAGGCACCATAAACACAGTCTCCACATTAG
* ** * * * ***
24834 GATACACGATGTTGATGTTTTGGTTTTGCAAGAAAGGCATTT-TTCCCATAAATTTTTG-TA-AA
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAA
* * * ** * * ** * ** **
24896 GTCAAAGTTTATGCCTCAAATGAGACAAATGTGGATTCTAGTAATGATCTTCATTTATTTT-GTG
65 -TCAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCA-TTATTTTCAAG
* * * * * * *
24960 ATTTGGCACGAGAAGCACATTCTCCTCATTAG
128 AATAGGCACCATAAACACAGTCTCCACATTAG
* * * ** * * * * * *
24992 GATAAATGATATTGATGATTTT-CTTTTTCATGGAAATCTTTTCTTTGC-CC-TATTTTCCATAA
1 GATACACGATATTGATG-TTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTT-GATAG
* * * * * * * *
25054 AATAAAAGTTCATCCCTTAAATAAGACGAGCATCG-TTTC-CTATAATAGTCCCCATTCTTTTCA
63 AATCAAAGTTTATCCCTTAAATAAGACAAACAT-GAATACTCT-TAATGGTCCCCATTATTTTCA
* * * * * * *
25117 TGATTGGGAACCA-AAATCACATTC-CCATCAATAA
126 AGAATAGGCACCATAAA-CACAGTCTCCA-CATTAG
** * * * *
25151 GAGGCATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * * ** * * *
25216 CAAAGCTT-GCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAAGAT
66 CAAAGTTTATCC-CTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCATTATTTTCAAGAA
* * *
25280 TAGGCACCATTAACATAGTC-CTCTCATTAG
130 TAGGCACCATAAACACAGTCTC-CACATTAG
* * ** *
25310 GATACACGAT-TTGATGCTTTGGTTT-AGCAAGAAAGGCTTTT-TCCCCACCAATTTTTG-TA-A
1 GATACACGATATTGATGTTTTGGTTTCA-CAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGA
* ** * * * * ** * ** ** * *
25370 AGTCTAAGTTCGTACCTTAAA-AGAGCCAAACATGGATTCTAGTATTTATCTTCATTCAATTT-G
64 A-TCAAAGTTTATCCCTTAAATA-AGACAAACATGAATACTCTTAATGGTCCCCATT-ATTTTCA
* * ** ** *
25433 TGATTAGGCATTATAAGA-ACTTTCTCCTCATTAG
126 AGAATAGGCACCATAA-ACACAGTCTCCACATTAG
* * *** * * * **
25467 GATA-AGTGATATTGATGATTTT-TTTTTGTAAGGAAATCTTTTCTTTGC-CC-TATTTTCCTTA
1 GATACA-CGATATTGATG-TTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTT-GATA
* * * * * * * ** * * *
25528 AAATTAAAGTTTATCCCATAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAT
62 GAATCAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCATTATTTTCAA
* * * * ** * *
25593 GATTGGGAACCAAAAATGCACTC-CCTTCATTAG
127 GAATAGGCACCATAAACACAGTCTCC-ACATTAG
* * * ** * * * * * * *
25626 GATACACGACATTCATGCTTTGGTGTT-GTAAGAAAAACCTTTCTTTCCATCATTTTTAACAAAA
1 GATACACGATATTGATGTTTTGGT-TTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
* * * * * * * * * ** * * *
25690 TCAAAGTTTGTCTCTTAAACAAGGCAATCATGCATAGTCATACTAATCCCCATTCTTTTCAGGAT
65 TCAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCATTATTTTCAAGAA
* * *
25755 TAGGCACCATAAACATAGTCTTCTCATTAG
130 TAGGCACCATAAACACAGTCTCCACATTAG
* * ** * * * *
25785 GATACGCGATACTGATGTTTTGGTTTCGTAAGAAAGGCATTT-TTCCCACCAATTTTTGGA-A-A
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTT-GATAGA
* * * * * * ** * * * **
25847 GTCTAAGTTTATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCC-TTAATTT-GTG
64 ATCAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTC-CCCATTATTTTCAAG
* * * * *
25910 ATTAGGCACTATAAGCACATTCTCCTCATTAG
128 AATAGGCACCATAAACACAGTCTCCACATTAG
* * * * * * * ** *** *
25942 AATAAATGATATTGATGATTTT-CTTTCGCATGAAAATCTTTTCTTT-GGCC-TATTTCCTTAAA
1 GATACACGATATTGATG-TTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTTGATAGA
* * * * * *
26004 ATCAAAGTTCATCCCTTAAATAAGAC-AGCATCG-ATTCTCGTAATAGTCTCCATTATTTTC-AG
64 ATCAAAGTTTATCCCTTAAATAAGACAAACAT-GAATACTCTTAATGGTCCCCATTATTTTCAAG
* * * * * *
26066 GATCGGGAACC-TAAAACATATTC-CCTTCATTAG
128 AAT-AGGCACCAT-AAACACAGTCTCC-ACATTAG
* * * * * *
26099 GATAC-CTGACATTGATGCTTTGATGTT-GCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGA
1 GATACAC-GATATTGATGTTTTGGT-TTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA
* * * ** * **
26162 ATAAAAGTTT-TCCTCTTAAATAAGACAAACTTGAATACT-TATACTAATCCCCATTCTTTTCGG
64 ATCAAAGTTTATCC-CTTAAATAAGACAAACATGAATACTCT-TAATGGTCCCCATTATTTTCAA
* * ** * *
26225 GATTAGGCACCACAAACTTAGTCTTCTA-ATTGG
127 GAATAGGCACCATAAACACAGTC-TCCACATTAG
* * **
26258 GATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTT
26300 TCCCCACCAA
Statistics
Matches: 1388, Mismatches: 452, Indels: 206
0.68 0.22 0.10
Matches are distributed among these distances:
155 4 0.00
156 41 0.03
157 219 0.16
158 351 0.25
159 646 0.47
160 116 0.08
161 11 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (159 bp):
GATACACGATATTGATGTTTTGGTTTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
CAAAGTTTATCCCTTAAATAAGACAAACATGAATACTCTTAATGGTCCCCATTATTTTCAAGAAT
AGGCACCATAAACACAGTCTCCACATTAG
Found at i:26945 original size:82 final size:82
Alignment explanation
Indices: 26794--26988 Score: 327
Period size: 82 Copynumber: 2.4 Consensus size: 82
26784 AACAATTTGT
* * *
26794 ATCAATACAAACAGTAAATGTATCGATACATAAGTGTTGTATCGATACAATGTATCGCTACAAAG
1 ATCAATAC-ATCATTAAATGTATCGATACATAAGTGCTGTATCGATACAATGTATCGCTACAAAG
26859 CTACTGCCAAGGAAATGA
65 CTACTGCCAAGGAAATGA
*
26877 ATCAATACATCATTAAATGTATCGATACGTAAGTGCTGTATCGATACAATGTATCGCTACAAAGC
1 ATCAATACATCATTAAATGTATCGATACATAAGTGCTGTATCGATACAATGTATCGCTACAAAGC
26942 TACTGCCAAGGAAATGA
66 TACTGCCAAGGAAATGA
* *
26959 ATCGATACATCATTCAATGTATCGATACAT
1 ATCAATACATCATTAAATGTATCGATACAT
26989 TGTATTGATA
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 97 0.92
83 8 0.08
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (82 bp):
ATCAATACATCATTAAATGTATCGATACATAAGTGCTGTATCGATACAATGTATCGCTACAAAGC
TACTGCCAAGGAAATGA
Found at i:27923 original size:476 final size:476
Alignment explanation
Indices: 27002--32447 Score: 7191
Period size: 476 Copynumber: 11.4 Consensus size: 476
26992 ATTGATACAT
* * *
27002 TAATGAGAAGAAC-ATGTTTATGGTGCCCCAATCCTGAAAAGAATGGGGAATAGTTTGACTATTC
1 TAATGAGAAG-ACTATATTTATGGTG-CCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTC
* * * *
27066 ATGTTTATCCTATTTAAGACACAAACTTTGATTCCATCAAAAACGGTGGAATGAAAAGCTTTTCT
64 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
27131 TGCGACACCAAAGCATCAATGTCATGCCCCCTCTTGATGGGAATGTGATATTGGTTCCCAAGCTT
129 TGCGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * *
27196 GAAAAGAATAGGGACTCTTACGAGAAATGAGGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
194 GAAAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
* *
27261 TGGAAAATAGGG-AGAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTGAT
259 TGGAAAATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
27325 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
323 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
27390 ATCGCATTTGAGCCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAA
388 GTTGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
27455 CCAAAGCATCAATATCGCGTATCC
453 CCAAAGCATCAATATCGCGTATCC
* * * *
27479 TAATGAGAAGACTATATTGATCGTGCCTAATCCTGAAAAAAATGGAGATTAGTTTGACTATTCAT
1 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
* *
27544 GTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
* *
27609 CAACACCAAAGCATCAATGTCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGA
131 CGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGA
* * * * *
27674 AAAGAATGGGGACTATTATGGGAAACGACGCTCGTCTTATTTAGGGGATGAACTTTTATTTGATG
196 AAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATG
* *
27739 GAAAATAGGGCAAAGAAAAGCTTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCGAATGAG
261 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG
* * *
27804 GAGAATGTGCTTCTAGTGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCCAGGTTTGTT
326 GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTT
* * * *
27869 GCATATGAGGCATTAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTG-GAAAACC
391 GCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG-AAACC
27933 AAAGCATCAATATCGCGTATCC
455 AAAGCATCAATATCGCGTATCC
27955 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
1 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
*
28020 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
* * * *
28085 CGACACCAAAGCATCAATGTTATGTCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGA
131 CGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGA
* * * * * * *
28150 AAAGAATGGGGACTATCATGAGAATC-AGTGCTCATCTTATTTAAGGGATGAACTTTGAATTCAT
196 AAAGAATGGGGACTATTACGAGAAACGA-TGCTCGTCTTATTTAAGGGATGAACTTTTATTTTAT
* * * *
28214 GAAAAATAACGGCAAAAAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATG
260 GGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG
* * * * * * *
28278 AGGAGAATATGCTTATAGTGCATAATCATAAAATGAATAAAGATCATTCCTAGAATCCCTATTTG
324 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * * *
28343 TCT-CATTTAAGGCACGAAATTTGACTTTTCAAAAATTGGCGGGAAAAACGCATTTCTTGCGAAA
389 T-TGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
28407 TCAAAGCTTCAATATCGTGCATCC
453 CCAAAGCATCAATATCGCGTATCC
* * * * * * *
28431 TAATGAGAAGAAC-ATGTTTATGGTGCCCACTCCTGAAAATAATGGGGAGTAGTTTGCCTACTCA
1 TAATGAGAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCA
* * *
28495 TGTTTGCCTTATTTAAGTGACAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCTT
65 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * *
28560 GCGACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTG
130 GCGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTG
* ** *
28625 AAAAGATTGGGGACTATTACGAGAATTGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTAC
195 AAAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTAT
* * * * *
28690 GAAAAATAGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCATTATCGTTTCTCCTACTGA
260 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA
* * * *
28755 GGGGAATGTGCTTATAGTGCCTAATCTCAAAATGAATGAAGATCATT-TTGAGAATCCATGTTTA
325 GGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTG
* * * * * * *
28819 TCGCATTTGAAGCATGAACCTAGACTTCACAAAAATTGGAGGGAAAGATGCCTTTCTTGTGAAAC
389 TTGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* *
28884 CAAAGTATCAATATCGCATATCC
454 CAAAGCATCAATATCGCGTATCC
** * *
28907 TAATGAGAAGACTATATTGGTGGTGCCTAAGCCTGAAAAGAATGGGGATTAGTTTGACTATTAAT
1 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
* * * *
28972 GTTTATCTTATTTAAGAGATACACTTTGATTCCATCAAAAACGGTAGAAAGAAAAGCTTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
29037 CGACACCAAAGCATCAATGTCATGCC-CCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTG
131 CGACACCAAAGCATCAATGTCATGCCTCC-TATTGATGGGAATGTGATTTTGGTTCCCAATCTTG
* * * *
29101 AAAAGGAA-GGGGACTAATACGAGAAACAATGTTCATCTTATTTAAGGGATGAACTTTTATTTTA
195 AAAA-GAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
* * * * *
29165 TGGAAAATAGGGTAAATAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAGTA
259 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG
* * *
29230 AGGAGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTCTA
324 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
29295 TCGCATTTAAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTG-GAAAA
389 TTGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG-AAA
*
29359 CCAAAGCATCAATATCGGGTATCC
453 CCAAAGCATCAATATCGCGTATCC
* * *
29383 TAATGAGAAGACTATATTTGTGGTGCCTAATCCTGAAAAGGATGGCGATTAGTTTGACTATTCAT
1 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
** * * * *
29448 ACTTGTCTTCTTTAAGAGACAAACTTTGATTCCGTCAAAAAAGGTGGAAAGAAAAGCTTTTCTTA
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
* * * *
29513 TGACACCAAAGCATCAATGTTATGTCTTCTATT-AGTGGGAATGTGATTTTGGTTCCCAATCTTG
131 CGACACCAAAGCATCAATGTCATGCCTCCTATTGA-TGGGAATGTGATTTTGGTTCCCAATCTTG
* * *
29577 AAAAGAATGGGGACTATTAC-ATGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTGAATTTA
195 AAAAGAATGGGGACTATTACGA-GAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
* * *
29641 TGGAAAACAAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTCTCCTAAT
259 TGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
*
29706 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
323 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
29771 ATCGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAA
388 GTTGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
29836 CCAAAGCATCAATATCGCGTATCC
453 CCAAAGCATCAATATCGCGTATCC
* * * **
29860 TAATGAGAAAACTATATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTATTTGT
1 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
* *
29925 GTTTTTCTTCTTTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
*
29988 CGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAAAGTGATTTTGGTTCCCAATCTTGA
131 CGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGA
* * *
30053 AAAGAATGGGGACTATTACAAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTACG
196 AAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATG
* * * *
30118 AAAAATAAGGGCAAAGAAAATATTTCCATGCAAAA-AAAATCATCAATATCATTTATCTTAATGA
261 GAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA
* * * * * * *
30182 GGAGAATGTGCTTACAGTGCCTAATCATAAAATGGATAAAGGATCTTTCCTAGAATCCTTGTTTG
325 GGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCCATGTTTG
** * * *
30247 TCT-CATTTGAGGCAAAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAA
389 T-TGCATTTGAGGCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* *
30311 ACCGAAGCATCAATATCGTGTATCC
452 ACCAAAGCATCAATATCGCGTATCC
* * * * * *
30336 TAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGAGTAGTATGGCTACTCA
1 TAATGAGAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCA
** * *
30400 TGTTTACCTTATTTAAGAAACAAACTTTGATTCCAT-AAGAAACGGTGGAAAGAAAAGCTTTTTT
65 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA-AAACGGTGGAAAGAAAAGCTTTTCT
* ** ** * * * * *
30464 TGTGACAATAAAGCATCAATGTCATGTATCCTATTAAAGGAAATGTG-TTTTCGGTACCGAATCT
129 TGCGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCT
* * * * * * * * *
30528 TGAAAAATAATGGAGATTGTTAC-AAAAATTGATGCTTGTCTTATTTAAGGGGTGAACTTTGATT
193 TG-AAAAGAATGGGGACTATTACGAGAAA-CGATGCTCGTCTTATTTAAGGGATGAACTTTTATT
* * *
30592 TCATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTA
256 TTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTA
* * * * * * *
30657 ATGA-G-GAATATGCATATAGTGCCTAATCATAAAATCAATAAAGATCATTCCTAGAATCCTTGT
321 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* ** * *
30720 TTGTCT-CATTTGAAGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCATTTCTCGCG
386 TTGT-TGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * *
30784 AAACCAAAGCTTCAATATCGTGCATCC
450 AAACCAAAGCATCAATATCGCGTATCC
* * * * * * *
30811 TAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAATGAATGGGGAGTAGTATGGCTACTCA
1 TAATGAGAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCA
* * *
30875 TGTTTGCCTCATTTAAGAGACAAACTTTGATTCCATAAAAAACGG-GGCAAAGAAAAGCTTTTCT
65 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG-AAAGAAAAGCTTTTCT
* * * *
30939 TGCAACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
129 TGCGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * * *
31004 GAAAAGAATGGAGACTATTATGAGAATCAATGCTCATCTTATTTAAGGGATGAACTTTTATTTTA
194 GAAAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
* *
31069 TTGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
259 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG
* * * * *
31134 AGGAAAATGGGCTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCAAGTTTG
324 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* *
31199 TCT-CATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTAGGG-AAAATGCCTTTCTTGTGAA
389 T-TGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCTTGCGAA
* *
31262 ACCAAAACGTCAATATCGCGTATCC
452 ACCAAAGCATCAATATCGCGTATCC
31287 TAATGAGAAGACTATATTTGA-GGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCA
1 TAATGAGAAGACTATATTT-ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCA
* * * *
31351 TGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCTTCTCTT
65 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* *
31416 GTGACACCAAAGCATCAATGTCATGCC-CCTTATTGATGGGAATGTGATTTTGGTTCCCAATCCT
130 GCGACACCAAAGCATCAATGTCATGCCTCC-TATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * *
31480 GAAAAGAATGGGGACTATTATGAGAAACAATGCTCGTCTTATTTAAGGGATAAACTTTTATATTA
194 GAAAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
* * *
31545 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATTATTTCTCCGAATG
259 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG
* ** * *
31610 AGGAGAATGTGCTTATAATGCCTAATCACAAAATGAATGAAGATTTTTGCTAGAATCCATGTTTA
324 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* *
31675 TCGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTT-TTGCAAAA
389 TTGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG-CCTTTCTTGCGAAA
**
31739 CCAAAGCATCAATATCATGTATCC
453 CCAAAGCATCAATATCGCGTATCC
*
31763 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTTTTCAT
1 TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
* * * * * *
31828 ATTTGTCTTATTTAAGAGACAAACTTTGATTCCGTCAAAAAAGGAGCAAAAAAAAGCTTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
* * * * *
31893 CGACACCAAAGCATCAATGTTATGTCTCTTATTAATGGGCATGTGATTTTGGTTCCCAATCTTGA
131 CGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGA
* * * * *
31958 AAAGAATGGGGACTATTAC-ATGAATCGACGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAT
196 AAAGAATGGGGACTATTACGA-GAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTAT
* * * *** * *
32022 GAAAAATAAGGGCTAAGAAAAGAGTTCCGCACAAAAAAAAATCATCAATATCATTTATCCTAATG
260 GGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG
* * * * * *
32087 AGGAGAATGTGCTTATAGTGCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCCTTGTTTG
324 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
32152 TCT-CGTTTGAGGCACGGACTTTGACTTTACAAAAATTGGTGGGAAAAATGCATTTCTTGCGAAA
389 T-TGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
32216 CCAAAACTTCAATATCGTGTATCT
453 CCAAAGCATCAATATCGCGTATCC
* * *
32240 TAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTTTAACTATTCA
1 TAATGAGAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCA
* * ** *
32304 TGTTTAT-TTATTTAAGACACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCGT
65 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* ** * * **
32368 GCGACACCAAAGCATCAATGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCTAAGATTG
130 GCGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTG
*
32433 AAAAGAATAGGGACT
195 AAAAGAATGGGGACT
32448 CTTCATGTTT
Statistics
Matches: 4371, Mismatches: 540, Indels: 117
0.87 0.11 0.02
Matches are distributed among these distances:
474 175 0.04
475 504 0.12
476 2880 0.66
477 608 0.14
478 121 0.03
479 83 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (476 bp):
TAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCAT
GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
CGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGA
AAAGAATGGGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATG
GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG
GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTT
GCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCA
AAGCATCAATATCGCGTATCC
Found at i:32639 original size:216 final size:216
Alignment explanation
Indices: 32256--32663 Score: 595
Period size: 216 Copynumber: 1.9 Consensus size: 216
32246 GAAGAACATG
* *
32256 TTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTTTAACTATTCATGTTTATTTATTTAAGA
1 TTTATGGTGCCCAATCATGAAAAGAATGGAGATTAGTTTAACTATTCATGTTTATTTATTTAAGA
*
32321 CACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAA
66 CACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGCATCAA
* *
32386 TGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCTAA-GATTGAAAAGAATAGGGACTCT
131 TGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCCAATCA-TGAAAAGAATAGGGACTCT
32450 TCATGTTTGTTTGAAGCCTATA
195 TCATGTTTGTTTGAAGCCTATA
* * *
32472 TTTATGGTGCCTAATCATGAAAAGAATGGAGATTAGTTTGACTATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCCAATCATGAAAAGAATGGAGATTAGTTTAACTATTCATGTTTAT-TTATTTAAG
* ** * * * *
32537 AGACAAACTTTGATTTCATCAAAAACGGTGGAAAGAAAA-CCTTTCTTGTGACCCCAAAGCATCA
65 ACACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGCATCA
* * ** * *
32601 ATGTCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCATGAAAAGAATGGGGACT
130 ATGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCCAATCATGAAAAGAATAGGGACT
32664 ATTATAGGAA
Statistics
Matches: 169, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
216 124 0.73
217 45 0.27
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (216 bp):
TTTATGGTGCCCAATCATGAAAAGAATGGAGATTAGTTTAACTATTCATGTTTATTTATTTAAGA
CACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGCATCAA
TGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCCAATCATGAAAAGAATAGGGACTCTT
CATGTTTGTTTGAAGCCTATA
Found at i:33396 original size:475 final size:477
Alignment explanation
Indices: 32467--43523 Score: 8586
Period size: 476 Copynumber: 22.8 Consensus size: 477
32457 TGTTTGAAGC
* * *
32467 CTATATTTATGGTGCCTAATCATGAAAAGAATGGAGATTAGTTTGACTATTCATGTTTGTCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * *
32532 TTAAGAGACAAACTTTGATTTCATCAAAAACGGTGGAAAGAAAA-CCTTTCTTGTGACCCCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* *
32596 CATCAATGTCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCATGAAAAGAATGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* *
32661 ACTATTA-TAGGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAGGG
196 ACTATTACGA-GAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGG
* * *
32725 CAAAGAAAAGATTTTCATGAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGC
260 CAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGC
* * * * * * * *
32790 TTATCGTGCTTAATCATAAAATAAATAAAGATCATTCCTAGAAT-CATTGTTTGTCTCATTTGAG
325 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-TGTTTATCGCATTTGAG
* * *
32854 GCACGAACTTAGACTTTACAAAAATTGGCGGGAAAAA-CACATTTCTTGCGAAACCAAAGCT-TC
389 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAG-TATC
*
32917 AATATCGTGCATCCTAATGAGAAGAA
452 AATATCGTGTATCCTAATGAGAAGAA
* * * * * * * ** *
32943 CT-TGTTTATAGTGCCCAATCCTGAAAAGAATGGGGAGTAGTATGGCTACTCATGTTTGCCTCAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * *
33007 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTCCTTGCGACCCCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * *
33072 CATCAATGTCTTGTCTCCTAATGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-AGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* *
33136 ACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTAATTTTATGGAAAATAGGGC
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
* * * * * *
33201 AAAGAAAAGATTTTCAAGAAAAAGAAAATCATCATTATCGTTTCTCCTACTGAGGGGAATGTGCT
261 AAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
* * * *
33266 TATAGTGCCTAACCACAAAATGAGTGAAGATCATTACTAGAATCCAAGTTTATCGCATTTGAAGC
326 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGC
* * * * * * *
33331 ATGAACCTAGACTTCACAAAAATTGATGGGAAAGATGACTTTCTTGTGAAACGAAAGTGTCAATA
391 ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAATA
* **
33396 TTGCATATCCTAATGAGAAG-A
456 TCGTGTATCCTAATGAGAAGAA
* * *
33417 CTATATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACGATTAATGTTTATCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* *
33482 TTAAGAGACAAACTTTGATTCCATCAAAAGCGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* *
33547 CATCAATGTCATGTCTCATATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* * * *
33612 ACTATTACGAGAAACAATGCTCATCTTATTTAAGGGATGAACTTTTATTTTATAGAAAATAGGGC
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
* ** *
33677 AAAGAAAAGATTTCCATGCAAAAGAAAATTGTCAATATCATTTCTCCTAATGAGGAAAATGTGCT
261 AAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
* *
33742 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTATCGCATTTGAGCC
326 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGC
* * *
33807 ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGTATCAATA
391 ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAATA
* *
33872 TCGCGTATCCTAATCAGAAG-A
456 TCGTGTATCCTAATGAGAAGAA
* * *
33893 CTATATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTATTTATGTTTATCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* *
33958 TTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAACTTTTTTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
*
34021 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGATTGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
** * * *
34086 ACTATTACGAGAAATAATGCCCGTCTTATTTAAGGGATGAGCTTT-TTTTTATGGAAAATAGGGC
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
* * *
34150 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCAGTTCTCCTAATGAGGAGAATGTGCT
261 AAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
*
34215 TATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGC
326 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGC
* * *
34280 ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGTATCAATA
391 ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAATA
* * * *
34345 TCGCGTATCCTAATCAGAACAT
456 TCGTGTATCCTAATGAGAAGAA
* * *
34367 CTATATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTATTTATGTTTATCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* *
34432 TTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACTAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* *
34495 CATCAATGTCAGGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATAGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* * *
34560 ACTATTACGAGAAACGAGGCTCGTCTTATATAAGGGATAAACTTTGATTTTATGGAAAATAAGGG
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGG
* * * **
34625 CAAAAAAAATATTTCCATGCAAAAA-AAAATCATCAATATCATTTATATTAATGAGGAGAATGTG
260 CAAAGAAAAGATTTCCATG-AAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTG
* * * *
34689 CTTATAGTGCCTAATCATAAAATGAATAAAGATCATT-CTTAGAATCCATGTTTGTCTCATTTGA
324 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTATCGCATTTGA
** * * * *
34753 GGCACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACG-CATTTCTTGCGAAACCGAAGCAT
388 GGCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAGTAT
*
34817 CAATATCATGTATCCTAATGAGAAGAA
451 CAATATCGTGTATCCTAATGAGAAGAA
* * * * * * ** * *
34844 C-ATGTTTATGGTGCCCAATCCTGAAAACAATGGGGAGTAGTATGGCTACCCACGTTTACCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * **
34908 TTAAGAGACAAACTTTGATTCCATAAAAAACGGTGGAAAGAAAAGCTTTT-TTGTGACAATAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
** * * *
34972 CATCAATGTCATGTATCCTATTAAAGGGAATGTG-TTTTCGGTGT-CGAATCTTGAAAAGAATGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTT-GGT-TCCCAATCTTGAAAAGAATGG
* * * * ** * *
35035 AGAGTGTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAATATTA-
194 GGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA-AATAG
* * * *
35099 GGCCAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTTTCCTAATGA-G-GAATGT
258 GGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
* * *** ** * * * ** * *
35162 GCATAGAGTGCCTAATGGGAATGTTTGCCTTATTTAAGAGACAAAACTTTGATTCCATCAAAAAA
323 GCTTATAGTGCCTAATCACAA--AATG----AATGAAGA-TCATTAC-TAGAATCCAT-------
** ** * ** ** *** **
35227 AGGTGGAGAGAAAAGCTTTTCTGGC--GACACCAAAGCATCAATGTTATGTCTCCAATTAATGGG
373 --GT-----TTATCGCATTTGAGGCATGA-A-CTTAG-A-C--T-TTA---CAAAAATTGGTGGG
** * * * * * * * * * * * * **
35290 -AATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATCACGAGAAT-C--A-GTGCCG-
421 AAAAATGACTTT-CTTGCGAAAC---CAAAGTAT---CAATAT--CGTGTATCCTAATGAGAAGA
*
35349 T
477 A
* * * * * * ** **
35350 CT-TATTTAAGGGATAAACTTCGATTTCCTGAAAAATAACGACAAAGAAAAGATTTCCATGCAAA
1 CTATATTT-ATGG-T--GC--CTA-ATCCTG-AAAAGAATG---GGGATTAG--TT---TG----
** * **** * ** ** *
35414 AAAAATCACCAATATCATTTATTCTAATGAGGAGAATGTGTTTTTCGTGCCTAATCATAAAATGA
46 ACTATTCATGTTTATC--TTATT-TAA-GA-GACAAACT-TTGAT--T-CC--ATCA-AAAACG-
* * * **** * ** * *
35479 AT--AAAGATCATTCCTAGAATCATTTT-TTGTCTTA-TTTGAGGCA-CAAACTTA-GACTTTAC
98 GTGGAAAG---A-----A-AAGC-TTTTCTTG-C-GACACCAAAGCATCAATGTCATG-C-CT-C
** * *** ** * * * * ** **** *
35538 AAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCAAAGCTTCAATATCATGCATCCTA--ATG
148 --CTATTGATGGG-AATGTG-A-TT-TTG-G-TTCCCAATCTTGAAAAGAATGGGGACTATTACG
* * * ** ** ** *
35601 AGAAGAAC-ATGTTTACGGTGCCTAATCTTGAA---AAGAA-TGGGGAGTAGTATGGCTACTCAT
205 AG-A-AACGATG-CT-C-GT--CTTAT-TT-AAGGGATGAACT-TTGA-TTTTATGGAAAAT-A-
* *
35661 GTTTGCCTCATTTAAGAGACAA-ACTTTGATTCCATAAAAAACGGTGCAAAGAAAAGCTTTTCTT
257 G---G--GCA---AAGA-A-AAGA---T--TTCCAT---GAA------AAAGAAAA--------T
* * * * * * * * * *
35725 GCGACACCAAAGCATCAATGTCTTGTCCTCTATTGATGG-GAATGTGATTTTGGTTCCCAATCTT
290 ----CATC-AA-TATC-A--T-TTCT-C-CTAATGA-GGAGAATGTGCTTATAGTGCCTAATC-A
* ** * * ** ** * * ** *
35789 GAAAA-GAATGGGGA-CTATTA-TGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATT
341 CAAAATGAATGAAGATC-ATTACT-AGAATCCATGTTTATCGCATTTGAGGCATGAACTTAGACT
** * ** * * * ** * * *
35851 TTATGGAAAATAGG-GCAAAGAAAAGACTTCCATGC-AAAAGAAAATCATCAATATCATTTATCC
404 TTA-CAAAAATTGGTGGGAA-AAATGACTTTCTTGCGAAACCAAAGT-ATCAATATCGTGTATCC
35914 TAATGAGGAA-AA
466 TAATGA-GAAGAA
** * * * ** * * * *
35926 -TGCACTTATAGTGCCTAATCAC--AAAATGAACGAAGATCA--TT-ACTAGAATCCAAGTTTGT
1 CTATATTTATGGTGCCTAATC-CTGAAAA-GAATGGGGATTAGTTTGACT---ATTCATGTTTAT
* * * * * ** *
35985 CTCATTTGAG-GCACGAA-TTTAAACTT-TA-CAAAAATTAGTAGG---GAAAATGCCTTTCTTG
61 CTTATTTAAGAG-ACAAACTTT-GA-TTCCATCAAAAA-CGGT-GGAAAGAAAA-GCTTTTCTTG
* * * * *** * * * ** *
36043 TGAAACCAGAA-CATCAATATCGTATATCCTAATTAGA-AGAACATGT--TTATGGCGCCTAATC
120 CGACACCA-AAGCATCAATGTCATGCCTCCT-ATT-GATGGGA-ATGTGATTTTGGTTCCCAATC
* * * * * ** * * * * *
36104 CTAAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGAT-AAGCTATAAT
181 TTGAAAAGAATGGGGACTATTACGAG-AAACGATGCTCGTCTTATTTAAGGGATGAA-CTTTGAT
* ** * * * ** * ** * * * *
36167 TCTATCCAAAAT-GGTGGAAAGAAAAGCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCC
244 TTTATGGAAAATAGG-GCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCC
* ** * * * * * ** * * ** *
36231 T-ATTAAAAGAACAGTGTTTTTGGCT-CCCAATCTTGAGAA-GAATGGAGATTGTTACAAGAATC
308 TAATGAGGAGAA-TGTGCTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATC
* ** * ** * * * * **
36293 GATACTTGTCTTATTT-AGGGGATGAACTTTGA-TATTA-AGGAAAA-TAG-GAG-AATGTG-CT
370 CATGTTTATCGCATTTGA-GGCATGAACTTAGACT-TTACA--AAAATTGGTGGGAAAAATGACT
** * * * ** * * * ** *
36351 TATAGTGCCTAATCACAAAATGAAGGAAGATCAT-TA--CTAGAATCCATGTTTG-T
431 T-TCTTG-CGAA--ACCAAA-GTATCAATATCGTGTATCCT--AAT-GA-G-AAGAA
* * * * * * *
36404 CTCAT-TTGA-GGCATGAACATAGA-CTTTACATAA-ATTAGTGGGAAAAATACCTTTCTTGTAA
1 CT-ATATTTATGG--TG--CCTA-ATCCTGA-A-AAGA--A-TGGG--GATTA---GT-TTG---
* * * * * * ** *
36465 AACCAAAACATCGATATTGCTATCCTA-ATAAGAAGACTATGTTT-ATGGTGCCTAATCCTGAAA
46 -A-C--TA-TTC-ATGTT--TATCTTATTTAAG-AGACAAACTTTGAT--T-CC--AT-C-AAAA
* * * * * * *
36528 A-GAATGGGAATTAGTTTGAATATTTGTGTTTGTCTTGTTTAAGAGA-CAAA-CTTTAAT-TCTA
95 ACG-GT-GGAA--A----GAA-A--AG-CTTT-TCTTG----CGACACCAAAGCATCAATGTC-A
*** * ** *** ***
36589 T-CAAAAAC-AGTGGA-AAGAATAGCCTTTCTTGCAACACCAAAGCTTCAATGTCATGTATCCTA
142 TGC--CTCCTA-TTGATGGGAAT-GTGATT-TTGGTTC-CC-AA---TC----T--TG------A
* *** * * * ** * * *
36651 ATGAAGGAAAGGTGTTTTAAGTTTCAAATCATAAAAACAATG-GAGAC-TA-TTACGAGAATCG-
185 A--AA-GAATGG-GGACT-A--TT---A-C-GAGAAACGATGCTCGTCTTATTTAAG-GGAT-GA
* * ** ** *** * *
36712 ACGCTTG-TCTTATTTAAGGAAT-GAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTC
236 AC-TTTGATTTTATGGAA--AATAGGGCAAAGA---AAAG--------------------ATTTC
** * * *
36775 CATTCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAAAATGTGCTTATAGTGCCTAATC
275 CATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * * * ** * *
36840 ACAAAATGAAGGAAGTTCATTACTAGAATCAATGTTTCTCTCATTTGACACATAAACATAGGA-T
340 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGCATGAACTTA-GACT
* * * ** **
36904 TTACAAAAATTAGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATATCGCATATCCTAA
404 TTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTAA
36969 TGAGAAG-A
469 TGAGAAGAA
* *
36977 CTATATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATACATGTTTATCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * **
37042 TTAAGAGACAAACTTTGATTCCATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGATAATAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * *
37107 CATCAATGTTATGTCTCCTATTAACGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-GGC
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* *
37171 ATCTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAGGG
196 A-CTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGG
* *
37236 AAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCT-CTGAATGAGGAGAATGTG
260 CAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCT-AATGAGGAGAATGTG
* * *
37300 CTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCTATGTTTATCGCTTTTGAG
324 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAG
* * * * *
37365 GCGTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGCATCAA
389 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAA
* *
37430 TATCATGTATCCTAATGAAAAG-A
454 TATCGTGTATCCTAATGAGAAGAA
* * * * * *
37453 CTAAATTTATGGTGCCTAATCTTGAAAAGAATGTGGATTAGTTTCACTATTCACGTTTGTCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * *
37518 TTAAGAGACAAACCTTGATTCCGTCAAAAAAGGTGGAAATAAAAGCTTTTCTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * *
37583 CTTCAATGTTATGTCTCCTATTAATGGGAATGTGATTTTGGTTCTCAATCTTGAAAAGAATGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* * *
37648 ACTATTAC-ATGAATCGATGCTCATCTTATTTAAGGGATGGACTTTGATTTTATGGAAAATAAGG
196 ACTATTACGA-GAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGG
* * *
37712 GCAAAGAAAAGATTTTCACGCAAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
259 GCAAAGAAAAGATTTCCATG-AAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
* * * * * ** * *
37776 GCTTATAGTGCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCTTTGTTTGTCTCATTTGA
323 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGA
* * *
37841 GGCACGGACTTAGACTTTACAAAAATTGGTGGGAAAAAT-TCATTTCTTGCGAAACCAAAGCT-T
388 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAG-TAT
*
37904 CAATATCATGTATCCTAATGAGAAGAA
451 CAATATCGTGTATCCTAATGAGAAGAA
* * * *
37931 C-GTGTTTATGGTACCCAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * *
37995 CTAAGACACAAACTTTGATTCCTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAT
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * *
38060 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATATTGGTTCCTAAGCTTGAAAAGACTAGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* * * *
38125 ACTCTTACGAGAAACGATGCTCATCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA-GGA
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
** *
38189 AGAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATCTGC
261 A-AAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGC
*
38254 TTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGG
325 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGG
* * * * * *
38319 CATGAACTTAGACTTTTCAACAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGCATCAAT
390 CATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAAT
*
38384 ATCGCGTATCCTAATGA-AA-ACA
455 ATCGTGTATCCTAATGAGAAGA-A
* * *
38406 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTTGACTATTCGTGTTTGTCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
*
38471 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
** * *
38536 CATCAATGTCATGCCTATTATTGATGGGAACGAGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* * * *
38601 ACTACTATGGGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAGGGC
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
* * *
38666 AAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
261 AAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
*
38731 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGTGGC
326 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGC
* * * *** *
38796 TTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTTTAAAACCAAAGCATCAATA
391 ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAATA
***
38861 TTACGTATCCTAATGAGAA-AA
456 TCGTGTATCCTAATGAGAAGAA
*
38882 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* *
38947 TTGAGAGACCAAACTTTGATTCCATCGAAAAA-GGTGGAAAAAAAAGCTTTTCTTGCGACACCAA
66 TTAAGAGA-CAAACTTTGATTCCATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * *
39011 AGCATCAATGTTATGTCTTCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGG
129 AGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGG
* * * * * *
39076 GGACTATTACGAGAATCAATGCTCGTCTTATTTAAGGGATGAACTTTAATTTCATGAAAAATAAC
194 GGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AG
* * *
39141 GGCAAAGAAAAGATTTCCATGCAAAA-AAAACCATCAATATCATTTATCCTAATGAGGA-AATTG
258 GGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAA-TG
* * * * * * *
39204 TGCTTATAGTGCCTAATCATAAAATGTATAAAGATCATTCCTAGAATCCTTGTTTGTCTCATTTG
322 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTG
* * * * * *
39269 AGGCACGAACTTAGACTTTAGAAAACTTGGTGGG-AAAACG-CATTTCTTGTGAAACCGAAGCT-
387 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAG-TA
*
39331 TCAATATCGTGCATCCTAATGAGAAGAA
450 TCAATATCGTGTATCCTAATGAGAAGAA
* * * * * * * ** *
39359 C-ATGTTTATGGTACCCAATCCTAAAAAGAATGGGGAGTAGTATGGCTACTT-ATGTTTGCCCTA
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTA-TTCATGTTTATCTTA
* * * *
39422 TTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTGTTCTTGCGACCCCAAA
65 TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
39487 GCATCAATGTCTTGTCTCCTATTGATGAGAATGTGATTTTGGTCCCCAATCTT-AAAATGAATGG
130 GCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAA-GAATGG
* ** * * * * *
39551 GGTCTATTACGAGAATTGATACTCATCTTATTTAAGGGATGAACTTTTATTTTATGGGAAATAAG
194 GGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGG
* * ** * *
39616 GCAAAGAAAAGATTTTCGTGAAAAAGAAAATCATCGTTATCATTTCTCCTACTGAGGGGGAATGT
259 GCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGA-GGAGAATGT
*
39681 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCGCATTTGA
323 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGA
* * * * * * * *
39746 AGCATGAACCTAGACCTCACAAAAATAGGTGGGAAAGATG-CTTTTCTTGTGAAATCAAAGTATC
388 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAGTATC
**
39810 AATATCGCATATCCTAATGAGAA-AA
452 AATATCGTGTATCCTAATGAGAAGAA
*
39835 CTATATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* *
39900 TTAAGACACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTTTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * *
39965 CCTCATTGTCTTGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* * * *
40030 ACTATTACGAGAAACAATGCTCGTCTTATTTAAGGGATAAACTTTTA-TTTAGTAGAAAATAGGG
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTA-TGGAAAATAGGG
* * *
40094 CAAAGAAAAGATTTCCATGCAAAAGAAAAAT-ATCAATATCATTTATCCTAATGAGAAGAATGTG
260 CAAAGAAAAGATTTCCATGAAAAAG-AAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTG
*
40158 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTATCGCATTTGAG
324 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAG
* * * * * *
40223 GCATGAACATAGACTTCACAAAACTTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAA
389 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAA
**
40288 TATCGCATATCCTAATGAGAAG-A
454 TATCGTGTATCCTAATGAGAAGAA
* * *
40311 CTATATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAC
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
40376 TTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
*
40439 ---C-ATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCCTGAAAAGAATGGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
* *
40500 ATTGTTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGG
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGG
* * * *
40565 CAAAAAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCTTAAAT-AGGAGAATGTG
260 CAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCT-AATGAGGAGAATGTG
* * * * * *
40628 CTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTTGTCTCATTTGAG
324 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAG
* ** * * *
40693 ACACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACG-CATTTCTTGCGAAACCAAAGCATC
389 GCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAGTATC
40757 AATATCGTGTATCCTAATGAGAAGAA
452 AATATCGTGTATCCTAATGAGAAGAA
* * * * * * * * *
40783 C-ATGTTTATGGTGCCCAATCCTGAACAGAATGGGGAGTAGTATGGCTACTCAAGTTTACCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * **
40847 TTAAGAGACAAACTTTGATTCCATAAAAAACGGTTGAAAGAAAAGCTTTT-TTGTGACAATAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
** * * * * * *
40911 CATCAATGTCATGTATCCTATTAAAGGGAATGTG-TTTTCAGTACCGAATCTTGAAAAGAATGGA
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAATGGG
* * * ** * * * * * * *
40975 GATTGTTATGAGAATTGATGGTTGTCTTATTTAAGAGTTGAACTTTGATTTTATAGAATATAAGG
195 GACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGG
* * *
41040 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTGCTCCTAATGA-G-GAATGTGC
260 CAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGC
* ** * * * *** * *
41103 ATATAGTGCCTAATCATTAAATCAATAAAGATCATTCCTAGAATTTTTGTTTGTCTCATTTGAGG
325 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGG
* * * *
41168 CACGAACATAGACTTTGCAAAAATTGGTGGGAAAAATG-CATTTCTTGCGAAACCAAAGCT-TGA
390 CATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAG-TATCA
* *
41231 ATATCGTGCATCGTAATGAGAAGAA
453 ATATCGTGTATCCTAATGAGAAGAA
* * * * * * * **
41256 C-ATGTTTATGGTGCCCAATCCTGAAAAGAATGGGTAGTAGTATGGCTACTCATGTTTGCCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * *
41320 TTAA-AGACAAACTTTGATTCCTTCAAAAACGGTGCAAAGAAAAGCTTTTCTTGGGACCCCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * *
41384 CATTAATGTCTTGTCC-CCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAGGAATGGG
131 CATCAATGTCATG-CCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGG
* * *
41448 GACTATTACGAGAATCGATGCTCTTCTTATTTAAGGGATGAACTTCT-ATTTTATGAAAAATAGG
195 GACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTT-TGATTTTATGGAAAATAGG
* * * * * *
41512 GCAAAGAAAAGATTTCCATGCAAAAGAATATCATCGATATCATTTATCTTAATGAGGAAAATGTG
259 GCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTG
* * *
41577 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAG
324 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAG
* * * * * * *
41642 GCACGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAAGCCAGAA-CATC
389 GCATGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGACTTTCTTGCGAAACCA-AAGTATC
* * * * *
41705 AATATGGTGCATCCAAATTAGAGGAA
452 AATATCGTGTATCCTAATGAGAAGAA
* * * *
41731 C-ATGTTTATGGCGCCTAATCCT-AAAAGGAATGGGGATTAGTATGAGTATTCATGTTGTA--TT
1 CTATATTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTTTGACTATTCATGTT-TATCTT
* * * * * * * *
41792 ATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCATGCGACACCAA
64 ATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
** * ** * * * * *
41857 AGCATCAATGTCATGTATCCTATTTA-AAGAACAGTGTTTTTGGCTCCCAATCTTGAGAAGAGTG
129 AGCATCAATGTCATGCCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * ** * * * * * * *
41921 GAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTAAGGAAAATCG
193 GGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAG
* * * * * * *
41986 AGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTACTAAGGAGAATGT
258 GGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
* * *
42051 GCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
323 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGA
* * * * *
42116 GGCATGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAAACCAGAA-CAT
388 GGCATGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGACTTTCTTGCGAAACCA-AAGTAT
* * * *
42179 CAATATCGTGCATCCAAATTAGAGGAA
451 CAATATCGTGTATCCTAATGAGAAGAA
* * * *
42206 C-ATGTTTATGGCGCCTAATCCT-AAAAGGAATGGGGATTAGTATGAGTATTCATGTTGTA--TT
1 CTATATTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTTTGACTATTCATGTT-TATCTT
* * * * * * * *
42267 ATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCATGCGACACCAA
64 ATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
** * ** * * * * *
42332 AGCATCAATGTCATGTATCCTATTTA-AAGAACAGTGTTTTTGGCTCCCAATCTTGAGAAGAGTG
129 AGCATCAATGTCATGCCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * ** * * * * * * *
42396 GAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTAAGGAAAATCG
193 GGGACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAG
* * * * * * *
42461 AGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTACTAAGGAGAATGT
258 GGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
* * *
42526 GCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
323 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGA
* * * * **
42591 GGCATGAACATAGACTTTACAAAAATTTGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCA
388 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCA
*** *
42656 ATATTACGTATCCTAATAAGAAG-A
453 ATATCGTGTATCCTAATGAGAAGAA
* ** * * * * * *
42680 CTATGTTTATGGCACCTAATCCTAAAAAGGATGGGGATTAGTATAAGTATTCATGTTTGTCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * * * * * *
42745 TTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAAGCTTTTCATGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * ** * * * * * * *
42810 CTTCAATGCCATGTATCCTAATGAAGGAAATGTG-TTTTAGGTTCCCAATCCTAAAAACAATGGA
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAATGGG
** * ***
42874 GACTATTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAAAAATAGGG
195 GACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGG
*
42939 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGC
260 CAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGC
* * * * * *
43004 TTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTTGTCTCATTTGAGG
325 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGG
* * *
43069 CATGAACATAGACTTTACAAAAATTGGTGGGAAAAACG-CATTTCTTGCAAAACCAAAGCT-TCA
390 CATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGAC-TTTCTTGCGAAACCAAAG-TATCA
**
43132 A-ATCGTACATCCTAATGAGAAGAA
453 ATATCGTGTATCCTAATGAGAAGAA
* * * * * * * **
43156 C-ATGTTTATGGTGCCCAATCCTGAAAAGATTGGGGAGTAGTATGGCTACTCATGTTTGCCTTAT
1 CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
* * *
43220 TTAAGAGACAAACTTCGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGCGACCCCAAAG
66 TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * *
43285 CATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAGGAATAGGG
131 CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
** * * * * *
43350 ACTATTACGAGAATTGATGCTTGTCTTATTTAAGGGGTGAACTTTTATTTTATGAAAAATAAGGC
196 ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
* * *
43415 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGCT
261 AAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
* *
43480 TATCGTGCCTAATCACAAAATGAATGTAGATCATTACTAGAATC
326 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
43524 ACCATAACAA
Statistics
Matches: 8647, Mismatches: 1439, Indels: 991
0.78 0.13 0.09
Matches are distributed among these distances:
469 5 0.00
470 206 0.02
471 154 0.02
472 57 0.01
473 549 0.06
474 610 0.07
475 2107 0.24
476 2676 0.31
477 1188 0.14
478 94 0.01
479 4 0.00
480 8 0.00
481 3 0.00
482 16 0.00
483 5 0.00
484 4 0.00
485 3 0.00
486 1 0.00
488 2 0.00
491 2 0.00
494 3 0.00
495 1 0.00
496 17 0.00
497 1 0.00
498 11 0.00
499 11 0.00
500 18 0.00
501 11 0.00
502 10 0.00
503 24 0.00
504 4 0.00
505 7 0.00
506 12 0.00
507 11 0.00
508 4 0.00
509 10 0.00
510 9 0.00
511 8 0.00
512 2 0.00
513 5 0.00
514 8 0.00
515 1 0.00
516 2 0.00
517 4 0.00
518 5 0.00
519 4 0.00
520 3 0.00
521 14 0.00
522 13 0.00
523 11 0.00
524 9 0.00
525 24 0.00
526 20 0.00
527 16 0.00
528 18 0.00
529 15 0.00
530 3 0.00
531 13 0.00
532 11 0.00
533 4 0.00
534 9 0.00
535 13 0.00
536 3 0.00
537 8 0.00
538 5 0.00
539 1 0.00
540 3 0.00
542 3 0.00
543 13 0.00
544 5 0.00
545 6 0.00
546 9 0.00
547 17 0.00
548 8 0.00
549 19 0.00
550 9 0.00
551 13 0.00
552 9 0.00
553 16 0.00
554 12 0.00
555 15 0.00
556 14 0.00
557 18 0.00
558 1 0.00
559 3 0.00
560 11 0.00
561 13 0.00
562 2 0.00
563 2 0.00
564 3 0.00
565 5 0.00
566 5 0.00
567 5 0.00
568 7 0.00
569 5 0.00
570 9 0.00
571 7 0.00
572 8 0.00
573 11 0.00
574 5 0.00
575 15 0.00
576 24 0.00
577 87 0.01
578 19 0.00
579 14 0.00
580 9 0.00
581 3 0.00
582 1 0.00
585 1 0.00
586 14 0.00
587 1 0.00
588 2 0.00
591 1 0.00
594 1 0.00
598 3 0.00
599 3 0.00
600 10 0.00
601 3 0.00
602 4 0.00
603 1 0.00
604 3 0.00
605 1 0.00
606 7 0.00
608 16 0.00
609 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (477 bp):
CTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTAT
TTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGG
ACTATTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGC
AAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCT
TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGAGGC
ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGACTTTCTTGCGAAACCAAAGTATCAATA
TCGTGTATCCTAATGAGAAGAA
Found at i:34482 original size:158 final size:157
Alignment explanation
Indices: 33370--34482 Score: 372
Period size: 159 Copynumber: 7.0 Consensus size: 157
33360 GAAAGATGAC
** * * * * * *
33370 TTTCTTGTGAAACGAAAGTGTCAATATTGCATATCCTAATGAGAAGACTATATTTGTGGTGCCTA
1 TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCAGAAGACTATATTTATGGTGCCTA
* * * *
33435 ATCCTGAAAAGAATGGGGATTAGTTTGACGATTAATGTTTATCTTATTTAAGAGACAAACTTTGA
66 ATCTTGAAAAGAATGGGGATTA-TTTGACTATTTATGTTTATCTTATTTAAGAGA-GAACTTTGA
* *
33500 TTCCATCAAAAGCGGGGGAAAGAAAAGCT
129 TTCCATCAAAAACGGTGGAAAGAAAAGCT
* * * * ** * * * * * * * *
33529 TTTCTTGCGACACCAAAGCATCAATGTCATGTCTCATATTGATG-GGAATGTGATTT-TGGTTCC
1 TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCA-GAAGACTAT-ATTTATGGTGCC
* * * ** *** * * *
33592 CAATCTTGAAAAGAATGGGGACTATTACGAGAAACAATGCTCATCTTATTTAAGGGATGAACTTT
64 TAATCTTGAAAAGAATGGGGATTATT-TGACTATTTATGTTTATCTTATTTAAGAGA-GAACTTT
* ** * * *
33657 TATTTTAT-AGAAAATAGG-GCAAAGAAAAGAT
127 GATTCCATCA-AAAA-CGGTGGAAAGAAAAGCT
* * ** * * *** * * * * ** *
33688 TTCCATGCAAAAGAAAATTGTCAATATCATTTCTCCTAATGAGGAA-AATGTGCTTATAGTGCCT
1 TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCA-GAAGACTATATTTATGGTGCCT
** ** * ** ** * **
33752 AATC-ACAAAATGAATGAAGATCA-TT-ACTAGAATCAATGTTTATCGCATTTGAGCCATGAACT
65 AATCTTGAAAA-GAATGGGGATTATTTGACT---ATTTATGTTTATCTTATTTAAGAGA-GAACT
* * * * * *
33814 TAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCC
125 TTGA-TTCCATCAAAAA-CGGTGGAAAGAAAAGCT
* *
33846 CTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCAGAAGACTATATTTATGGTGGCTA
1 TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCAGAAGACTATATTTATGGTGCCTA
33911 ATCTTGAAAAGAATGGGGATTAGTTTGACTATTTATGTTTATCTTATTTAAGAGA-AACTTTGAT
66 ATCTTGAAAAGAATGGGGATTA-TTTGACTATTTATGTTTATCTTATTTAAGAGAGAACTTTGAT
*
33975 TCCATCAAAAACGGTGGAAAGAAAAACT
130 TCCATCAAAAACGGTGGAAAGAAAAGCT
* * * * * ** ** * * * * * *
34003 TTTTTTGCGACACCAAAGCATCAATGTCATGCCTCCTATTGATG-GGAATGTGATTT-TGGTTCC
1 TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCA-GAAGACTAT-ATTTATGGTGCC
* * * * ** * * **** * *
34066 CAATCTTGAAAAGATTGGGGACTATTACGAGAAATAATGCCCGTCTTATTTAAGGGATGAGCTTT
64 TAATCTTGAAAAGAATGGGGATTATT-TGACTATTTATGTTTATCTTATTTAAGAGA-GAACTTT
* ** * * *
34131 -TTTTTATGGAAAATA-GG-GCAAAGAAAAGAT
127 GATTCCAT-CAAAA-ACGGTGGAAAGAAAAGCT
* * * * * * * * * * * ** *
34161 TTCCATGCAAAA-GAAAATCATCAACATCAG-TTCTCCTAATGAGGAGAATGTGCTTATAGTGCC
1 TTTCTTGCAAAACCAAAGT-ATCAATATC-GCGTATCCTAATCAGAAGACTATATTTATGGTGCC
** ** * ** ** *
34224 TAATC-ACAAAACGAATGAAGATCA-TT-ACTAGAATCCATGTTTATCGCATTTGAG-GCATGAA
64 TAATCTTGAAAA-GAATGGGGATTATTTGACT---ATTTATGTTTATCTTATTTAAGAG-A-GAA
* * * * * *
34285 CTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCC
123 CTTTGA-TTCCATCAAAAA-CGGTGGAAAGAAAAGCT
* * *
34319 CTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCAGAACATCTATATTTATGGTGGCT
1 TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCAGAAGA-CTATATTTATGGTGCCT
34384 AATCTTGAAAAGAATGGGGATTAGTTTGACTATTTATGTTTATCTTATTTAAGAGA-AACTTTGA
65 AATCTTGAAAAGAATGGGGATTA-TTTGACTATTTATGTTTATCTTATTTAAGAGAGAACTTTGA
34448 TTCCATCAAAAACGGTGGAAAGAAAAGCT
129 TTCCATCAAAAACGGTGGAAAGAAAAGCT
34477 TTTCTT
1 TTTCTT
34483 ACGACACTAA
Statistics
Matches: 660, Mismatches: 240, Indels: 109
0.65 0.24 0.11
Matches are distributed among these distances:
155 3 0.00
156 21 0.03
157 125 0.19
158 228 0.35
159 256 0.39
160 19 0.03
161 5 0.01
162 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (157 bp):
TTTCTTGCAAAACCAAAGTATCAATATCGCGTATCCTAATCAGAAGACTATATTTATGGTGCCTA
ATCTTGAAAAGAATGGGGATTATTTGACTATTTATGTTTATCTTATTTAAGAGAGAACTTTGATT
CCATCAAAAACGGTGGAAAGAAAAGCT
Found at i:35833 original size:159 final size:161
Alignment explanation
Indices: 35190--35835 Score: 358
Period size: 159 Copynumber: 4.1 Consensus size: 161
35180 GAATGTTTGC
* * *
35190 CTTATTTAAGAGACAAAACTTTGA-TTCCATCAAAAAAA-GGTGGAGAGAAAAGCTTTTCTGGCG
1 CTTATTTAAGAGAC-AAACTTTGACTTCCAT-AAAAAAACGGTGCAAAGAAAAGCTTTTCTTGCG
* * * *
35253 ACACCAAAGCATCAATGT-TATGT-CTCC-AATTAATGGGAATGTGATTTTGGTTCCCAATCTTG
64 AAACCAAAGCATCAATATCT-TGTCCTCCTAA-TGA-GGGAATGTGATTTTGGTGCCCAATCTTG
* *
35315 AAAAGAATGGGGACTATCACGAGAATCAGTGC-CGT
126 AAAAGAATGGGGACTATTATGAGAATCAGTGCTCGT
* * * * * * * *
35350 CTTATTTAAGGGATAAACTTCGATTTCC-TGAAAAATAAC-G-ACAAAGAAAAGATTTCCATGC-
1 CTTATTTAAGAGACAAACTTTGACTTCCAT-AAAAA-AACGGTGCAAAGAAAAGCTTTTCTTGCG
** * * * * * * * *
35411 AAAAAAAATCACCAATATCATT-T-ATTCTAATGAGGAGAATGTGTTTTTCGTGCCTAATCAT-A
64 AAACCAAAGCATCAATATC-TTGTCCTCCTAATGAGG-GAATGTGATTTTGGTGCCCAATCTTGA
*** * * ** *
35473 AAATGAATAAAGA-TCATTCCT-AGAATCATTTTTTGT
127 AAA-GAATGGGGACT-ATT-ATGAGAATCAGTGCTCGT
* * ** ** * *
35509 CTTATTTGAG-GCACAAACTTAGACTT---TACAAAAATTGGTGGGAA-AAACGCATTTCTTGCG
1 CTTATTTAAGAG-ACAAACTTTGACTTCCATA-AAAAAACGGTGCAAAGAAAAGCTTTTCTTGCG
* * * * ** * *
35569 AAACCAAAGCTTCAATATCATG-CATCCTAATGAGAAGAACATG-TTTACGGTGCCTAATCTTGA
64 AAACCAAAGCATCAATATCTTGTCCTCCTAATGAG-GGAATGTGATTT-TGGTGCCCAATCTTGA
* * * * * *
35632 AAAGAATGGGGAGTAGTATG-GCTACTCA-TGTTTGC
127 AAAGAATGGGGACTATTATGAG--AATCAGTGCTCGT
* *
35667 CTCATTTAAGAGACAAACTTTGA-TTCCAT-AAAAAACGGTGCAAAGAAAAGCTTTTCTTGCGAC
1 CTTATTTAAGAGACAAACTTTGACTTCCATAAAAAAACGGTGCAAAGAAAAGCTTTTCTTGCGAA
* * *
35730 ACCAAAGCATCAATGTCTTGTCCT-CTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAA
66 ACCAAAGCATCAATATCTTGTCCTCCTAATGA-GGGAATGTGATTTTGGTGCCCAATCTTGAAAA
35794 GAATGGGGACTATTATGAGAATC-GATGCTCGT
130 GAATGGGGACTATTATGAGAATCAG-TGCTCGT
35826 CTTATTTAAG
1 CTTATTTAAG
35836 GGATGAACTT
Statistics
Matches: 352, Mismatches: 98, Indels: 73
0.67 0.19 0.14
Matches are distributed among these distances:
156 2 0.01
157 31 0.09
158 141 0.40
159 150 0.43
160 28 0.08
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (161 bp):
CTTATTTAAGAGACAAACTTTGACTTCCATAAAAAAACGGTGCAAAGAAAAGCTTTTCTTGCGAA
ACCAAAGCATCAATATCTTGTCCTCCTAATGAGGGAATGTGATTTTGGTGCCCAATCTTGAAAAG
AATGGGGACTATTATGAGAATCAGTGCTCGT
Found at i:36711 original size:418 final size:419
Alignment explanation
Indices: 35930--36758 Score: 1108
Period size: 418 Copynumber: 2.0 Consensus size: 419
35920 GGAAAATGCA
35930 CTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAG
1 CTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAG
** * * *
35995 GCACGAATTTAAACTTTACAAAAATTAGTAGGGAAAATGCCTTTCTTGTGAAACCAGAACATCAA
66 GCACGAACATAAACTTTACAAAAATTAGTAGGGAAAATACCTTTCTTGTAAAACCAAAACATCAA
* *
36060 TATCGTATATCCTAATTAGAAGAACATGTTTATGGCGCCTAATCCTAAAAAGAATGGGGATTAGT
131 TATCGTATATCCTAATAAGAAGAACATGTTTATGGCGCCTAATCCTAAAAAGAATGGGAATTAGT
* * * * **
36125 ATGAGTATTCATGTTTGTCTTATTTAAGAGATAAGCTATAATTCTATCCAAAATGGTGGAAAGAA
196 ATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTATAATTCTATCAAAAACAGTGGAAAGAA
* * * **
36190 AAGCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTATTAAAAGAACAGTGTTTTTGGC
261 AAGCCTTTCATGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGAACAGTGTTTTAAGC
* * * * * * * * * *
36255 TCCCAATCTTGAGAAGAATGGAGATTGTTACAAGAATCGATACTTGTCTTATTTAGGGGATGAAC
326 TCCAAATCATAAAAACAATGGAGACTATTACAAGAATCGACACTTGTCTTATTTAAGGAATGAAC
*
36320 TTTGATATTAAGGAAAATAGGAGAATGTG
391 TTTGATATTAAGAAAAATAGGAGAATGTG
* *
36349 CTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
1 CTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAG
* * * *
36414 GCATGAACATAGACTTTACATAAATTAGT-GGGAAAAATACCTTTCTTGTAAAACCAAAACATCG
66 GCACGAACATAAACTTTACAAAAATTAGTAGGG-AAAATACCTTTCTTGTAAAACCAAAACATCA
* * * *
36478 ATATTG-CTATCCTAATAAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTA
130 ATATCGTATATCCTAATAAGAAGAAC-ATGTTTATGGCGCCTAATCCTAAAAAGAATGGGAATTA
* ** * *
36541 GTTTGAATATTTGTGTTTGTCTTGTTTAAGAGACAAACTTTAATTCTATCAAAAACAGTGGAAAG
194 GTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTATAATTCTATCAAAAACAGTGGAAAG
* * * * *
36606 AATAGCCTTTCTTGCAACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGAA-AGGTGTTTTA
259 AAAAGCCTTTCATGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGAACA-GTGTTTTA
* * * *
36670 AGTTTCAAATCATAAAAACAATGGAGACTATTACGAGAATCGACGCTTGTCTTATTTAAGGAATG
323 AGCTCCAAATCATAAAAACAATGGAGACTATTACAAGAATCGACACTTGTCTTATTTAAGGAATG
* *
36735 AACTTTGATTTTATGAAAAATAGG
388 AACTTTGATATTAAGAAAAATAGG
36759 GCAAAGAAAA
Statistics
Matches: 352, Mismatches: 55, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
417 3 0.01
418 230 0.65
419 119 0.34
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (419 bp):
CTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAG
GCACGAACATAAACTTTACAAAAATTAGTAGGGAAAATACCTTTCTTGTAAAACCAAAACATCAA
TATCGTATATCCTAATAAGAAGAACATGTTTATGGCGCCTAATCCTAAAAAGAATGGGAATTAGT
ATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTATAATTCTATCAAAAACAGTGGAAAGAA
AAGCCTTTCATGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGAACAGTGTTTTAAGC
TCCAAATCATAAAAACAATGGAGACTATTACAAGAATCGACACTTGTCTTATTTAAGGAATGAAC
TTTGATATTAAGAAAAATAGGAGAATGTG
Found at i:37385 original size:476 final size:476
Alignment explanation
Indices: 36338--43523 Score: 8889
Period size: 476 Copynumber: 15.1 Consensus size: 476
36328 TAAGGAAAAT
*
36338 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * **
36403 TCTCATTTGAGGCATGAACATAGACTTTACATAAATTAGTGGGAAAAATACCTTTCTTGTAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* * *
36468 CAAAACATCGATAT--TGCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
131 CAAAGCATCAATATCGTG-TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * ** * * *
36531 ATGGGAATTAGTTTGAATATTTGTGTTTGTCTTGTTTAAGAGACAAACTTTAATTCTATCAAAAA
195 ATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
* * * * * * * *
36596 CAGTGGAAAGAATAGCCTTTCTTGCAACACCAAAGCTTCAATGTCATGTATCCTAATGAA-GGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCT-ATTAATGGGA
* * * * * * * * * *
36660 AGGTG-TTTTAAGTTTCAAATCATAAAAACAATGGAGACTATTACGAGAATCGACGCTTGTCTTA
324 ATGTGATTTT-GGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTA
* * *
36724 TTTAAGGAATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATTCAAAAGAAAA
388 TTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
*
36789 TCATCAATATCATTTATCCTATTG
453 TCATCAATATCATTTATCCTAATG
* * * * *
36813 AGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGTTCATTACTAGAATCAATGTTTC
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
** * * * *
36878 TCTCATTTGACACATAAACATAGGA-TTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGTGAAA
66 TCTCATTTGAGGCATGAACTTA-GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* ** * *
36942 CCAAAACATCAATATCGCATATCCTAATGAGAAGACTATATTTGTGGTGCCTAATCCTGAAAAGA
130 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* *
37007 ATGGGGATTAGTTTGACTATACATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
195 ATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
* * * ** * *
37072 TGGTAGAAAGAAAAGCTTTTCTTGCGATAATAAAGCATCAATGTTATGTCTCCTATTAACGGGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAA
*
37137 TGTGATTTTGGTTCCCAATCTTGAAAAGAAT-GGCATCTATTACGAGAATCGATGCTCGTCTTAT
325 TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGA-CTATTACGAGAATCGATGCTCGTCTTAT
* *
37201 TTAAGGGATGAACTTTTATTTTATGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAAT
389 TTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
*
37266 CATCAATATCATTTCT-CTGAATG
454 CATCAATATCATTTATCCT-AATG
* * *
37289 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCTATGTTTA
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
37354 TCGCTTTTGAGGCGTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* * ** *
37419 CAAAGCATCAATATCATGTATCCTAATGAAAAGACTAAATTTATGGTGCCTAATCTTGAAAAGAA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * * *
37484 TGTGGATTAGTTTCACTATTCACGTTTGTCTTATTTAAGAGACAAACCTTGATTCCGTCAAAAAA
196 TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
* * *
37549 GGTGGAAATAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTTATGTCTCCTATTAATGGGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAAT
* *
37614 GTGATTTTGGTTCTCAATCTTGAAAAGAATGGGGACTATTAC-ATGAATCGATGCTCATCTTATT
326 GTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGA-GAATCGATGCTCGTCTTATT
* * * *
37678 TAAGGGATGGACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTTCACGCAAAAAAAAAT
390 TAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
37743 CATCAATATCATTTATCCTAATG
454 CATCAATATCATTTATCCTAATG
* * * * * **
37766 AGGAGAATGTGCTTATAGTGCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCTTTGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
37831 TCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAAAATTCATTTCTTGCGAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* * * * *
37896 CAAAGCTTCAATATCATGTATCCTAATGAGAAGAAC-GTGTTTATGGTACCCAATCCTGAAAAGA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * *
37960 ATGGGGATTAGTTTGACTATTCATGTTTATCTTATCTAAGACACAAACTTTGATTCCTTCAAAAA
195 ATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
* * *
38025 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGCCTCCTATTGATGGGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAA
* * * * * * * *
38090 TGTGATATTGGTTCCTAAGCTTGAAAAGACTAGGGACTCTTACGAGAAACGATGCTCATCTTATT
325 TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATT
* * *
38155 TAAGGGATGAACTTTTATTTTATGGAAAATA-GGAAGAAGAAAAGATTTCCATGCCAAAGAAAAT
390 TAAGGGATGAACTTTGATTTTATGGAAAATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAAT
*
38219 CATCAATATCATTTCTCCTAATG
454 CATCAATATCATTTATCCTAATG
* * *
38242 AGGAGAATCTGCTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTA
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
38307 TCGCATTTGAGGCATGAACTTAGACTTTTCAACAATTGGTGGGAAAAATGCCCTTCTTGCAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* * * *
38372 CAAAGCATCAATATCGCGTATCCTAATGAAAACACTATATTTATGGTGCCTAATCCTGAAAAGAA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* *
38437 TGGAGATTAGTTTGACTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
196 TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
* * ** * *
38502 GGTGGAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGCCTATTATTGATGGGAAC
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAAT
* * * * *
38567 GAGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTACTATGGGAAACGATGCTCGTCTTATTT
326 GTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATTT
* * *
38632 AAGGGATGAACTTTTATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCTTGCAAAAGAAAATCA
391 AAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
*
38697 TCAATATCATTTCTCCTAATG
456 TCAATATCATTTATCCTAATG
*
38718 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTA
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * ***
38783 TCGCATTTGTGGCTTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTTTAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
*** * *
38848 CAAAGCATCAATATTACGTATCCTAATGAGAAAACTATATTTATGGTGCCTAATCCTGAAAAGAA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
*
38913 TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTGAGAGACCAAACTTTGATTCCATCGAAAA
196 TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCCATC-AAAA
* * * *
38978 A-GGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTATGTCTTCAATTAATGGGA
259 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGA
*
39042 ATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCAATGCTCGTCTTAT
324 ATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTAT
* * * *
39107 TTAAGGGATGAACTTTAATTTCATGAAAAATAACGGCAAAGAAAAGATTTCCATGCAAAA-AAAA
389 TTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
*
39171 CCATCAATATCATTTATCCTAATG
453 TCATCAATATCATTTATCCTAATG
* * * * *
39195 AGGA-AATTGTGCTTATAGTGCCTAATCATAAAATGTATAAAGATCATTCCTAGAATCCTTGTTT
1 AGGAGAA-TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
39259 GTCTCATTTGAGGCACGAACTTAGACTTTAGAAAACTTGGTGGG-AAAACGCATTTCTTGTGAAA
65 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * * * *
39323 CCGAAGCTTCAATATCGTGCATCCTAATGAGAAGAAC-ATGTTTATGGTACCCAATCCTAAAAAG
130 CCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * * * *
39387 AATGGGGAGTAGTATGGCTACTT-ATGTTTGCCCTATTTAAGAGATAAACTTTGATTCCATCAAA
194 AATGGGGATTAGTTTGACTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAA
* * * * * *
39451 AACGGTGCAAAGAAAAGCTGTTCTTGCGACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGAG
258 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGG
* * * * *
39516 AATGTGATTTTGGTCCCCAATCTT-AAAATGAATGGGGTCTATTACGAGAATTGATACTCATCTT
323 AATGTGATTTTGGTTCCCAATCTTGAAAA-GAATGGGGACTATTACGAGAATCGATGCTCGTCTT
* * * * * *
39580 ATTTAAGGGATGAACTTTTATTTTATGGGAAATAAGGCAAAGAAAAGATTTTCGTGAAAAAGAAA
387 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
** * *
39645 ATCATCGTTATCATTTCTCCTACTG
452 ATCATCAATATCATTTATCCTAATG
*
39670 AGGGGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
1 A-GGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * * * * *
39735 TTCGCATTTGAAGCATGAACCTAGACCTCACAAAAATAGGTGGGAAAGATGCTTTTCTTGTGAAA
65 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * ** * * *
39800 TCAAAGTATCAATATCGCATATCCTAATGAGAAAACTATATTTGTGGTGCCTAATCCTGAAAAGA
130 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* *
39865 ATGGGGATTAGTTTGACTATTCATGTTTATCTTATTTAAGACACAAACTTTGATTCCATCAAAAA
195 ATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
* * * * * *
39930 CGGTGGAAAGAAAAGCTTTTTTTGCGACACCAAAGCCTCATTGTCTTGCCTCCTATTGATGGGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAA
* *
39995 TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAAACAATGCTCGTCTTATT
325 TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATT
* * *
40060 TAAGGGATAAACTTTTA-TTTAGTAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAA
390 TAAGGGATGAACTTTGATTTTA-TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAAA
40124 T-ATCAATATCATTTATCCTAATG
453 TCATCAATATCATTTATCCTAATG
* * *
40147 AGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTA
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
40212 TCGCATTTGAGGCATGAACATAGACTTCACAAAACTTGGTGGGAAAAATGCCTTTCTTGCAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
** * * *
40277 CAAAGCATCAATATCGCATATCCTAATGAGAAGACTATATTTATGGTGGCTAATCTTGAAAAGAA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* *
40342 TGGGGATTAGTTTGACTATTCATGTTTATCTTACTTAAGAG--AAACTTTGATTCCATCAAAAAC
196 TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
* *
40405 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG---C-ATGTCATGCCTCCTATTGATGGGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAAT
* * * *
40466 GTGATTTTGGTTCCCAATCCTGAAAAGAATGGGGATTGTTACGAGAAACGATGCTCGTCTTATTT
326 GTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATTT
*
40531 AAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAAAAAAGATTTCCATGCAAAA-AAAATC
391 AAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
*
40595 ATCAATATCATTTATCTTAAAT-
455 ATCAATATCATTTATCCT-AATG
* * * *
40617 AGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * * *
40682 TCTCATTTGAGACACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAA
66 TCTCATTTGAGGCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* *
40747 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAACAG
130 CCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * * * ** *
40811 AATGGGGAGTAGTATGGCTACTCAAGTTTACCTTATTTAAGAGACAAACTTTGATTCCATAAAAA
194 AATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA
* * ** * *
40876 ACGGTTGAAAGAAAAGCTTTT-TTGTGACAATAAAGCATCAATGTCATGTATCCTATTAAAGGGA
259 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGA
* * * * * * * * * *
40940 ATGTG-TTTTCAGTACCGAATCTTGAAAAGAATGGAGATTGTTATGAGAATTGATGGTTGTCTTA
324 ATGTGATTTT-GGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTA
* * * * * *
41004 TTTAAGAGTTGAACTTTGATTTTATAGAATATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAA
388 TTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
**
41069 TCATCAATATCATTGCTCCTAATG
453 TCATCAATATCATTTATCCTAATG
* ** * * * ***
41093 A-G-GAATGTGCATATAGTGCCTAATCATTAAATCAATAAAGATCATTCCTAGAATTTTTGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
41156 TCTCATTTGAGGCACGAACATAGACTTTGCAAAAATTGGTGGGAAAAATGCATTTCTTGCGAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* * * * *
41221 CAAAGCTTGAATATCGTGCATCGTAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAAGA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * * * * *
41285 ATGGGTAGTAGTATGGCTACTCATGTTTGCCTTATTTAA-AGACAAACTTTGATTCCTTCAAAAA
195 ATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
* * * * * * *
41349 CGGTGCAAAGAAAAGCTTTTCTTGGGACCCCAAAGCATTAATGTCTTGTCCCCTATTGATGGGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAA
* *
41414 TGTGATTTTGGTTCCCAATCTTGAAAGGAATGGGGACTATTACGAGAATCGATGCTCTTCTTATT
325 TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATT
* *
41479 TAAGGGATGAACTTCT-ATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATAT
390 TAAGGGATGAACTT-TGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* *
41543 CATCGATATCATTTATCTTAATG
454 CATCAATATCATTTATCCTAATG
* *
41566 AGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
41631 TCTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAAG
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGCCTTTCTTGCGAAA
* * * * * *
41695 CCAGAA-CATCAATATGGTGCATCCAAATTAGAGGAAC-ATGTTTATGGCGCCTAATCCT-AAAA
130 CCA-AAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * *
41757 GGAATGGGGATTAGTATGAGTATTCATG-TTGTATTATTTAAGAGATAAGCTATGATTCTATCCA
193 -GAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
* * * *
41821 AAATGGTGGAAAGAAAACCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTATTTAA--
257 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTA-TTAATG
* * * * * * * * * ** * *
41884 AGAACAGTGTTTTTGGCTCCCAATCTTGAGAAGAGTGGAGATTGTTATAAGAATCGATACTTGTC
321 GGAA-TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTC
* * * * *
41949 TTATTTAGGGGATGAACTTTGATATTAAGGAAAATCGAGCAAAGAAAAGATTTCCATGCAAAAGA
385 TTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
42014 ATATCATCGATATCATTTATCCTACTA
450 AAATCATCAATATCATTTATCCTAATG
*
42041 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
42106 TCTCATTTGAGGCATGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAAA
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGCCTTTCTTGCGAAA
* * * * *
42170 CCAGAA-CATCAATATCGTGCATCCAAATTAGAGGAAC-ATGTTTATGGCGCCTAATCCT-AAAA
130 CCA-AAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * *
42232 GGAATGGGGATTAGTATGAGTATTCATG-TTGTATTATTTAAGAGATAAGCTATGATTCTATCCA
193 -GAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
* * * *
42296 AAATGGTGGAAAGAAAACCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTATTTAA--
257 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTA-TTAATG
* * * * * * * * * ** * *
42359 AGAACAGTGTTTTTGGCTCCCAATCTTGAGAAGAGTGGAGATTGTTATAAGAATCGATACTTGTC
321 GGAA-TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTC
* * * * *
42424 TTATTTAGGGGATGAACTTTGATATTAAGGAAAATCGAGCAAAGAAAAGATTTCCATGCAAAAGA
385 TTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
42489 ATATCATCGATATCATTTATCCTACTA
450 AAATCATCAATATCATTTATCCTAATG
*
42516 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
42581 TCTCATTTGAGGCATGAACATAGACTTTACAAAAATTTGTGGGAAAAATGCCTTTCTTGCAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* *** * ** * *
42646 CAAAACATCAATATTACGTATCCTAATAAGAAGACTATGTTTATGGCACCTAATCCTAAAAAGGA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * * * * * *
42711 TGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGATAAGCTATGATTCTATCCAAAAT
196 TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
* * * * * *
42776 GGTGGAAAGAAAAGCTTTTCATGCGACACCAAAGCTTCAATGCCATGTATCCTAATGAA-GGAAA
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCT-ATTAATGGGAA
* * * * * *
42840 TGTG-TTTTAGGTTCCCAATCCTAAAAACAATGGAGACTATTACGAGAATTGATGCTTGTCTTAT
325 TGTGATTTT-GGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTAT
***
42904 TTAAGGGATGAACTTTGATTTTACAAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
389 TTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
*
42969 CATCAATATCATTTCTCCTAATG
454 CATCAATATCATTTATCCTAATG
* * * *
42992 AGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTTG
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
43057 TCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAACGCATTTCTTGCAAAAC
66 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
* ** *
43122 CAAAGCTTCAA-ATCGTACATCCTAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAAGA
131 CAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * * * * *
43185 TTGGGGAGTAGTATGGCTACTCATGTTTGCCTTATTTAAGAGACAAACTTCGATTCCATCAAAAA
195 ATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
* * * *
43250 CGGTGCAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGGGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAA
* * * *
43315 TGTGATTTTGGTTCCCAATCTTGAAAGGAATAGGGACTATTACGAGAATTGATGCTTGTCTTATT
325 TGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATT
* * * *
43380 TAAGGGGTGAACTTTTATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
390 TAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
43445 ATCAATATCATTTATCCTAATG
455 ATCAATATCATTTATCCTAATG
* * *
43467 AGGAAAATGTGCTTATCGTGCCTAATCACAAAATGAATGTAGATCATTACTAGAATC
1 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
43524 ACCATAACAA
Statistics
Matches: 5912, Mismatches: 727, Indels: 144
0.87 0.11 0.02
Matches are distributed among these distances:
469 5 0.00
470 205 0.03
471 155 0.03
472 54 0.01
473 324 0.05
474 205 0.03
475 1701 0.29
476 2214 0.37
477 1005 0.17
478 44 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
TGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTATTAATGGGAAT
GTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTCGTCTTATTT
AAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
TCAATATCATTTATCCTAATG
Found at i:42934 original size:159 final size:159
Alignment explanation
Indices: 36557--43493 Score: 1288
Period size: 159 Copynumber: 43.8 Consensus size: 159
36547 ATATTTGTGT
* * ** * * ** * * * *
36557 TTGTCTTGTTTAAGAGACAAACTTTAATTCTATCAAAAACAGTGGAAAGAATAGCCTTTCTTGCA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* * * * * ** * *
36622 ACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGAAAGGTG-TTTTAAGTTTCAAATCATAAA
66 AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTAT-GGTGCCCAATCCTAAA
* *
36686 AACAATGGAGACTATTACGAGAA-TCGACGC
130 AAGAATGGAGACTATTACGAGAATTC-ATGC
* * * * *
36716 TTGTCTTATTTAAGGAATGAACTTTGATTTTATGAAAAATAGG-GCAAAGAAAAGATTTCCATTC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-GGTGCAAAGAAAAGCTTTTCATGC
** * * * * * * *
36780 AAAAGAAAATCATCAATATCATTTATCCTATTG-AGGAAAATGTGCTTATAGTGCCTAATCAC-A
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-AAATGTGATTATGGTGCCCAATC-CTA
* * * *
36843 AAATGAA-GGA-AGTTCATTACTAGAA-TCAATGT
128 AAAAGAATGGAGA-CT-ATTACGAGAATTC-ATGC
* * * *** * ** * ** * * *
36875 TTCTCTCATTTGACACATAAACATAGGA-TTTA-CAAAAATTAGTGGGAA-AAATGCCTTTCTTG
1 TTGTCTTATTTAAGGGATGAAC-TTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATG
** * * *** * * *
36937 TGAAACCAAAACATCAATATCGCATATCCTAATG-A-GAAGACTAT-ATTTGTGGTGCCTAATCC
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-A-TGTGA-TTATGGTGCCCAATCC
* * * * ** * *
36999 TGAAAAGAATGGGGATTAGTT-TGACTATACATGT
126 TAAAAAGAATGGAGACTA-TTACGAGAATTCATGC
* * ** ** *
37033 TTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTAG-AAAGAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGT-GCAAAGAAAAGCTTTTCATGC
* * * * * * * * * *
37097 GATAA-TAAAGCATCAATGTTATGTCTCCT-ATTAACGGGAATGTGATTTTGGTTCCCAATCTTG
65 -AAAACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAAATGTGATTATGGTGCCCAATCCTA
*
37160 AAAAGAATGGCA-TCTATTACGAGAA-TCGATGC
128 AAAAGAATGG-AGACTATTACGAGAATTC-ATGC
* * ** * * *
37192 TCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAGG-GAAAAGAAAAGATTTCCATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-GGTGCAAAGAAAAGCTTTTCATGC
** * * * * *
37256 AAAAGAAAATCATCAATATCAT-T-TCTCTGAATG-AGGAGAATGTGCTTATAGTGCCTAATCAC
65 AAAACCAAAGCATCAATGTCATGTATC-CT-AATGAAGGA-AATGTGATTATGGTGCCCAATC-C
* * * * *
37318 -AAAATGAATGAAGATTATTACTAGAA-TCTATGT
126 TAAAAAGAATGGAGACTATTACGAGAATTC-ATGC
* * * * * ** * ** *
37351 TTATCGCT-TTTGAGGCG-TGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAATGCCCTTCTT
1 TTGTC-TTATTTAAGG-GATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCAT
* ** *
37412 GCAAAACCAAAGCATCAATATCATGTATCCTAATGAA--AAGACT-AAATTTATGGTGCCTAATC
63 GCAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-A-TGTGA-TTATGGTGCCCAATC
* * * * ** * *
37474 TTGAAAAGAATGTG-GATTAGTTTC-ACTATTCACGT
125 CTAAAAAGAATG-GAGACTA-TTACGAGAATTCATGC
* ** * *** * * * * *
37509 TTGTCTTATTTAAGAGACAAACCTTGATTCCGTCAAAAAAGGTGGAAATAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* * * * * * * * * * *
37574 ACACCAAAGCTTCAATGTTATGTCTCCT-ATTAATGGGAATGTGATTTTGGTTCTCAATCTTGAA
66 AAACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAAATGTGATTATGGTGCCCAATCCTAAA
*
37638 AAGAATGGGGACTATTAC-ATGAA-TCGATGC
130 AAGAATGGAGACTATTACGA-GAATTC-ATGC
** * * * * *
37668 TCATCTTATTTAAGGGATGGACTTTGATTTTATGGAAAATAAGG-GCAAAGAAAAGATTTTCACG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAT-CAAAA-ATGGTGCAAAGAAAAGCTTTTCATG
** * * * * * * **
37732 CAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATTATA
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATCCTA
* ** * * * * *
37796 AAATGAATAAAG-GTCATTCCTAGAA-TCTTTGT
128 AAAAGAATGGAGACT-ATTACGAGAATTC-ATGC
* * * * * * * ** ** * *
37828 TTGTCTCATTTGAGGCACGGACTTAGACTTTA-CAAAAATTGGTGGGAA-AAATTCATTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATGC
* * * * * * * *
37891 GAAACCAAAGCTTCAATATCATGTATCCTAATG-AGAAGAACGTGTTTATGGTACCCAATCCTGA
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATCCTAA
* * * ** *
37955 AAAGAATGGGGATTAGTT-TGACTATTCATGT
129 AAAGAATGGAGACTA-TTACGAGAATTCATGC
* * ** ** * * * *
37986 TTATCTTATCTAAGACACAAACTTTGATTCCT-TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATT-TTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGC
* * * ** * * * * * * * *
38050 GACACCAAATCATCAATGTCATGCCTCCTATTGATGGGAATGTGA-TATTGGTTCCTAAGCTTGA
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTA-TGGTGCCCAATCCTAA
* * *
38114 AAAGACTAGG-GACTCTTACGAGAA-ACGATGC
129 AAAGAAT-GGAGACTATTACGAGAATTC-ATGC
** * ** * * * *
38145 TCATCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG-GAAGAAGAAAAGATTTCCATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCA-AAGAAAAGCTTTTCATGC
* ** * * * * * * * * *
38209 CAAAGAAAATCATCAATATCATTTCTCCTAATG-AGGAGAATCTGCTTATAGTTCCTAATCAC-A
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATC-CTA
* * * * *
38272 AAATGAATGAAGA-TCATTACTAGAATCCATGT
128 AAAAGAATGGAGACT-ATTACGAGAATTCATGC
* ** * * * * * ** * ** *
38304 TTATCGCATTTGAGGCATGAACTTAGACTTT-TCAACAATTGGTGGGAA-AAATGCCCTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAA-AAATGGTGCAAAGAAAAGCTTTTCATGC
* ** * *
38367 AAAACCAAAGCATCAATATCGCGTATCCTAATGAA--AACACTAT-ATTTATGGTGCCTAATCCT
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-A-TGTGA-TTATGGTGCCCAATCCT
* * * ** * *
38429 GAAAAGAATGGAGATTAGTT-TGACTATTCGTGT
127 AAAAAGAATGGAGACTA-TTACGAGAATTCATGC
* ** ** * * * * *
38462 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* * * * * * * * * *
38527 ACACCAAAGCATCAATGTCATGCCTAT--TATTGATGGGAACGAGATTTTGGTTCCCAATCTTGA
66 AAACCAAAGCATCAATGTCATG--TATCCTAATGAAGGAAATGTGATTATGGTGCCCAATCCTAA
* * * * *
38590 AAAGAATGGGGACTACTATGGGAA-ACGATGC
129 AAAGAATGGAGACTATTACGAGAATTC-ATGC
* * ** * *
38621 TCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAGG-GCAAAGAAAAGATTTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-GGTGCAAAGAAAAGCTTTTCATGC
** * * * * * * *
38685 AAAAGAAAATCATCAATATCATTTCTCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATCAC-A
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATC-CTA
* * * * *
38748 AAATGAATGAAGA-TCATTACTAGAATCCATGT
128 AAAAGAATGGAGACT-ATTACGAGAATTCATGC
* ** ** ** * * ** * ** * **
38780 TTATCGCATTTGTGGCTTGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAATGCCCTTCTTTT
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATGC
* * * * * * *
38843 AAAACCAAAGCATCAATATTACGTATCCTAATG-AGAAAACTAT-ATTTATGGTGCCTAATCCTG
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAA-TGTGA-TTATGGTGCCCAATCCTA
* * * ** *
38906 AAAAGAATGGGGATTAGTT-TGACTATTCATGT
128 AAAAGAATGGAGACTA-TTACGAGAATTCATGC
* * ** ** * * *
38938 TTGTCTTATTTGAGAGACCAAACTTTGATTCCATCGAAAAA-GGTGGAAAAAAAAGCTTTTCTTG
1 TTGTCTTATTTAAGGGA-TGAACTTTGATTTTATC-AAAAATGGTGCAAAGAAAAGCTTTTCATG
* * * * * * * * * * *
39002 CGACACCAAAGCATCAATGTTATGTCTTC-AATTAATGGGAATGTGATTTTGGTTCCCAATCTTG
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAAATGTGATTATGGTGCCCAATCCTA
*
39066 AAAAGAATGGGGACTATTACGAGAA-TCAATGC
128 AAAAGAATGGAGACTATTACGAGAATTC-ATGC
* * * * * * *
39098 TCGTCTTATTTAAGGGATGAACTTTAATTTCATGAAAAATAACG-GCAAAGAAAAGATTTCCATG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT--GGTGCAAAGAAAAGCTTTTCATG
* * * * * * * *
39162 CAAAA-AAAACCATCAATATCATTTATCCTAATG-AGGAAATTGTGCTTATAGTGCCTAATCATA
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAA-TGTGATTATGGTGCCCAATCCTA
* * ** * * * * *
39225 AAATGTATAAAGA-TCATTCCTAGAATCCTTGT
128 AAAAGAATGGAGACT-ATTACGAGAATTCATGC
* * * * * * * * * * *
39257 TTGTCTCATTTGAGGCACGAACTTAGACTTTA-GAAAACTTGGTG---GGAAAACGCATTTCTTG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAA-ATGGTGCAAAGAAAA-GCTTTTCATG
** * * * * * * *
39318 TGAAACCGAAGCTTCAATATCGTGCATCCTAATGAGAAGAACATGT--TTATGGTACCCAATCCT
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGAA-ATGTGATTATGGTGCCCAATCCT
* * * * * *
39381 AAAAAGAATGGGGAGTAGTATG-GCTACTT-ATGT
127 AAAAAGAATGGAGACTATTACGAG--AATTCATGC
* * * * ** * * * *
39414 TTGCCCTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTGTTCTTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
** * * * * * * *
39479 ACCCCAAAGCATCAATGTCTTGTCTCCTATTG-ATGAGAATGTGATTTTGGTCCCCAATCTTAAA
66 AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATCCTAAA
* * * * *
39543 ATGAATGGGGTCTATTACGAGAATTGATAC
130 AAGAATGGAGACTATTACGAGAATTCATGC
** * *** * * * *
39573 TCATCTTATTTAAGGGATGAACTTTTATTTTATGGGAAATAAG-GCAAAGAAAAGATTTTCGTGA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-GGTGCAAAGAAAAGCTTTTCATGC
** * ** * * * * * * * * *
39637 AAAAGAAAATCATCGTTATCATTTCTCCTACTGAGGGGGAATGTGCTTATAGTGCCTAATCAC-A
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGAAATGTGATTATGGTGCCCAATC-CTA
* * * * *
39701 AAATGAATGAAGA-TCATTACTAGAATCCATGT
128 AAAAGAATGGAGACT-ATTACGAGAATTCATGC
* ** * * * ** * * * *
39733 TTTTCGCATTTGAA-GCATGAACCTAGACCTCA-CAAAAATAGGTGGGAAAG--ATGCTTTTCTT
1 TTGTCTTATTT-AAGGGATGAACTTTGATTTTATCAAAAAT-GGT-GCAAAGAAAAGCTTTTCAT
** * * * *** * * * *
39794 GTGAAATCAAAGTATCAATATCGCATATCCTAATG-AGAAAACTAT-ATTTGTGGTGCCTAATCC
63 GCAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAA-TGTGA-TTATGGTGCCCAATCC
* * * * ** *
39857 TGAAAAGAATGGGGATTAGTT-TGACTATTCATGT
126 TAAAAAGAATGGAGACTA-TTACGAGAATTCATGC
* ** ** ** * * ** *
39891 TTATCTTATTTAAGACACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTTTTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* * * * ** * * * * * * *
39956 ACACCAAAGCCTCATTGTCTTGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
66 AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTATGGTGCCCAATCCTAAAA
* *
40021 AGAATGGGGACTATTACGAGAA-ACAATGC
131 AGAATGGAGACTATTACGAGAATTC-ATGC
* * * * *
40050 TCGTCTTATTTAAGGGATAAACTTTTA-TTTAGT-AGAAAATAGG-GCAAAGAAAAGATTTCCAT
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTA-TCA-AAAAT-GGTGCAAAGAAAAGCTTTTCAT
** ** * * * * * *
40112 GCAAAAGAAAAATATCAATATCATTTATCCTAATG-AGAAGAATGTGCTTATAGTGCCTAATCAC
63 GCAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATC-C
* * * * * *
40176 -AAAATGAATGAAGA-TCATTTCTAGAATCCATGT
126 TAAAAAGAATGGAGACT-ATTACGAGAATTCATGC
* ** * * * * * * * ** * * *
40209 TTATCGCATTTGAGGCATGAACATAGACTTCA-CAAAACTTGGTGGGAA-AAATGCCTTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAA-ATGGTGCAAAGAAAAGCTTTTCATGC
* *** * * * *
40272 AAAACCAAAGCATCAATATCGCATATCCTAATG-A-GAAGACTAT-ATTTATGGTGGCTAATCTT
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-A-TGTGA-TTATGGTGCCCAATCCT
* * * * ** *
40334 GAAAAGAATGGGGATTAGTT-TGACTATTCATGT
127 AAAAAGAATGGAGACTA-TTACGAGAATTCATGC
* * * ** * * * *
40367 TTATCTTACTTAAGAGA--AACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* ** * * * * * *
40430 ACACCAAAG---C-ATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCCTGAAA
66 AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTATGGTGCCCAATCCTAAAA
* * * *
40491 AGAATGGGGATTGTTACGAGAA-ACGATGC
131 AGAATGGAGACTATTACGAGAATTC-ATGC
* * * * * *
40520 TCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGG-GCAAAAAAAAGATTTCCATG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAT-CAAAA-ATGGTGCAAAGAAAAGCTTTTCATG
* * * * * * * * *
40584 CAAAA-AAAATCATCAATATCATTTATCTTAA--ATAGGAGAATGTGCTTATAGTGCCTAATCAT
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGA-AATGTGATTATGGTGCCCAATCCT
* ** * * * * *
40646 AAAATGAATAAAGA-TCATTCCTAGAATCCTTGT
127 AAAAAGAATGGAGACT-ATTACGAGAATTCATGC
* * ** ** * * ** ** * * *
40679 TTGTCTCATTTGAGACACAAACTTAGACTTTAGAAAAAATTGGTGGGAA-AAACGCATTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATGC
* * * * *
40743 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGT--TTATGGTGCCCAATCCTG
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGAA-ATGTGATTATGGTGCCCAATCCTA
* * * * * * * * *
40806 AACAGAATGGGGAGTAGTATG-GCTACTCAAGT
128 AAAAGAATGGAGACTATTACGAG-AATTCATGC
** * ** ** * * *
40838 TTACCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGTTG-AAAGAAAAGCTTTT-TTGT
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGG-TGCAAAGAAAAGCTTTTCATG-
* * * * * * * * * * * *
40901 GACAA-TAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTG-TTTTCAGTACCGAATCTTG
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTAT-GGTGCCCAATCCTA
* * * * *
40964 AAAAGAATGGAGATTGTTATGAGAATTGATGG
128 AAAAGAATGGAGACTATTACGAGAATTCATGC
* * * * *
40996 TTGTCTTATTTAAGAGTTGAACTTTGATTTTAT-AGAATATAAG-GCAAAGAAAAGATTTTCATG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCA-AAAAT-GGTGCAAAGAAAAGCTTTTCATG
** * * * * * *
41059 CAAAAGAAAATCATCAATATCAT-TGCTCCTAATG-AGG-AATGTGCA-TATAGTGCCTAATCAT
64 CAAAACCAAAGCATCAATGTCATGT-ATCCTAATGAAGGAAATGTG-ATTATGGTGCCCAATCCT
* ** ** * * ** *
41120 TAAATCAATAAAGA-TCATTCCTAGAATTTTTGT
127 AAAAAGAATGGAGACT-ATTACGAGAATTCATGC
* * * * * * * * ** * * *
41153 TTGTCTCATTTGAGGCACGAACATAGACTTT-GCAAAAATTGGTGGGAA-AAATGCATTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATGC
* * * * * * * * *
41216 GAAACCAAAGCTTGAATATCGTGCATCGTAATGAGAAGAACATGT--TTATGGTGCCCAATCCTG
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGAA-ATGTGATTATGGTGCCCAATCCTA
* * * * * *
41279 AAAAGAATGG-GTAGTAGTATG-GCTACTCATGT
128 AAAAGAATGGAG-ACTATTACGAG-AATTCATGC
* * ** * * * *
41311 TTGCCTTATTTAA-AGACAAACTTTGATTCCT-TCAAAAACGGTGCAAAGAAAAGCTTTTCTTGG
1 TTGTCTTATTTAAGGGATGAACTTTGATT-TTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGC
* ** * * ** * * * * * * *
41374 GACCCCAAAGCATTAATGTCTTGTCCCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAA
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTATGGTGCCCAATCCTAAA
* *
41439 AGGAATGGGGACTATTACGAGAA-TCGATGC
130 AAGAATGGAGACTATTACGAGAATTC-ATGC
* * *
41469 TCT-TCTTATTTAAGGGATGAACTTCT-ATTTTATGAAAAATAGG-GCAAAGAAAAGATTTCCAT
1 T-TGTCTTATTTAAGGGATGAACTT-TGATTTTATCAAAAAT-GGTGCAAAGAAAAGCTTTTCAT
* * * * * * * * *
41531 GCAAAA-GAATATCATCGATATCATTTATCTTAATG-AGGAAAATGTGCTTATAGTGCCTAATCA
63 GCAAAACCAA-AGCATCAATGTCATGTATCCTAATGAAGG-AAATGTGATTATGGTGCCCAATC-
* * * * * *
41594 C-AAAATGAATGAAGA-TCATTACTAGAATCCAAGT
125 CTAAAAAGAATGGAGACT-ATTACGAGAATTCATGC
* * * * ** * *** * *
41628 TTGTCTCATTTGAGGCACGAACTTAAAATTTA-CAAAAAT--TGCTTGGGAAAATGCCTTTCTTG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGC-AAAGAAAA-GCTTTTCATG
* * * ** * * * * *
41690 CGAAGCCAGAA-CATCAATATGGTGCATCCAAATTAGAGGAACATGT--TTATGGCGCCTAATCC
64 CAAAACCA-AAGCATCAATGTCATGTATCCTAATGA-AGGAA-ATGTGATTATGGTGCCCAATCC
* * * * * *
41752 TAAAAGGAATGGGGATTAGTATGAGTATTCATG-
126 TAAAAAGAATGGAGACTATTACGAGAATTCATGC
* * * * * * *
41785 TTGTATTATTTAAGAGAT-AAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCATGC
1 TTGTCTTATTTAAGGGATGAA-CTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGC
* * * * * * * * *
41849 GACACCAAAGCATCAATGTCATGTATCCTATTTAAAGAACA-GTGTTTTTGGCT-CCCAATCTTG
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-ATGTGATTATGG-TGCCCAATCCTA
* * * * ** *
41912 AGAAGAGTGGAGATTGTTATAAGAA-TCGATAC
128 AAAAGAATGGAGACTATTACGAGAATTC-ATGC
* * *** * * * *
41944 TTGTCTTATTTAGGGGATGAACTTTGATATTAAGGAAAATCGAGCAAAGAAAAGATTTCCATGCA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* * * * * * * * *
42009 AAA-GAATATCATCGATATCATTTATCCTACT-AAGGAGAATGTGCTTATAGTGCCTAATCAC-A
66 AAACCAA-AGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATC-CTA
* * * *
42071 AAATGAA-GGAAGA-TCATTACTAGAATCCATGT
128 AAAAGAATGG-AGACT-ATTACGAGAATTCATGC
* * * ** * *** * *
42103 TTGTCTCATTTGAGGCATGAACTTAAAATTTA-CAAAAAT--TGCTTGGGAAAATGCCTTTCTTG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGC-AAAGAAAA-GCTTTTCATG
* * * * * * * *
42165 CGAAACCAGAA-CATCAATATCGTGCATCCAAATTAGAGGAACATGT--TTATGGCGCCTAATCC
64 CAAAACCA-AAGCATCAATGTCATGTATCCTAATGA-AGGAA-ATGTGATTATGGTGCCCAATCC
* * * * * *
42227 TAAAAGGAATGGGGATTAGTATGAGTATTCATG-
126 TAAAAAGAATGGAGACTATTACGAGAATTCATGC
* * * * * * *
42260 TTGTATTATTTAAGAGAT-AAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCATGC
1 TTGTCTTATTTAAGGGATGAA-CTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGC
* * * * * * * * *
42324 GACACCAAAGCATCAATGTCATGTATCCTATTTAAAGAACA-GTGTTTTTGGCT-CCCAATCTTG
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-ATGTGATTATGG-TGCCCAATCCTA
* * * * ** *
42387 AGAAGAGTGGAGATTGTTATAAGAA-TCGATAC
128 AAAAGAATGGAGACTATTACGAGAATTC-ATGC
* * *** * * * *
42419 TTGTCTTATTTAGGGGATGAACTTTGATATTAAGGAAAATCGAGCAAAGAAAAGATTTCCATGCA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
* * * * * * * * *
42484 AAA-GAATATCATCGATATCATTTATCCTACT-AAGGAGAATGTGCTTATAGTGCCTAATCAC-A
66 AAACCAA-AGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATC-CTA
* * * *
42546 AAATGAA-GGAAGA-TCATTACTAGAATCCATGT
128 AAAAGAATGG-AGACT-ATTACGAGAATTCATGC
* * * * * * * ** * * *
42578 TTGTCTCATTTGAGGCATGAACATAGACTTTA-CAAAAATTTGTGGGAA-AAATGCCTTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATGC
* * * * * * ** *
42641 AAAACCAAAACATCAATATTACGTATCCTAAT-AA-GAAGACTATGTTTATGGCACCTAATCCTA
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAA-A-TGTGATTATGGTGCCCAATCCTA
* * * * ** * *
42704 AAAAGGATGGGGATTAGTATAAGTATTCATGT
128 AAAAGAATGGAGACTATTACGAGAATTCATGC
* * * * *
42736 TTGTCTTATTTAAGAGAT-AAGCTATGATTCTATCCAAAATGGTGGAAAGAAAAGCTTTTCATGC
1 TTGTCTTATTTAAGGGATGAA-CTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGC
* * * * * *
42800 GACACCAAAGCTTCAATGCCATGTATCCTAATGAAGGAAATGTG-TTTTAGGTTCCCAATCCTAA
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTAT-GGTGCCCAATCCTAA
* *
42864 AAACAATGGAGACTATTACGAGAATTGATGC
129 AAAGAATGGAGACTATTACGAGAATTCATGC
* *
42895 TTGTCTTATTTAAGGGATGAACTTTGATTTTA-CAAAAAATAGG-GCAAAGAAAAGATTTCCATG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATC-AAAAAT-GGTGCAAAGAAAAGCTTTTCATG
** * * * * * * * *
42958 CAAAAGAAAATCATCAATATCATTTCTCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATCATA
64 CAAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGATTATGGTGCCCAATCCTA
* ** * * * * *
43022 AAATGAATAAAGA-TCATTCCTAGAATCCTTGT
128 AAAAGAATGGAGACT-ATTACGAGAATTCATGC
* * * * * * ** * * *
43054 TTGTCTCATTTGAGGCATGAACATAGACTTTA-CAAAAATTGGTGGGAA-AAACGCATTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TGGTGCAAAGAAAAGCTTTTCATGC
* * * ** * *
43117 AAAACCAAAGCTTCAA-ATCGTACATCCTAATGAGAAGAACATGT--TTATGGTGCCCAATCCTG
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGA-AGGAA-ATGTGATTATGGTGCCCAATCCTA
* * * * * * * *
43179 AAAAGATTGGGGAGTAGTATG-GCTACTCATGT
128 AAAAGAATGGAGACTATTACGAG-AATTCATGC
* * ** * ** * * *
43211 TTGCCTTATTTAAGAGACAAACTTCGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
** * * * * * * * * *
43276 ACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
66 AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTATGGTGCCCAATCCTAAAA
* *
43341 GGAATAGG-GACTATTACGAGAATTGATGC
131 AGAAT-GGAGACTATTACGAGAATTCATGC
* * * * * *
43370 TTGTCTTATTTAAGGGGTGAACTTTTATTTTATGAAAAATAAG-GCAAAGAAAAGATTTCCATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-GGTGCAAAGAAAAGCTTTTCATGC
** * * * * * *
43434 AAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAAAATGTGCTTATCGTGCCTAATC
65 AAAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-AAATGTGATTATGGTGCCCAATC
43494 ACAAAATGAA
Statistics
Matches: 4701, Mismatches: 1716, Indels: 722
0.66 0.24 0.10
Matches are distributed among these distances:
152 3 0.00
153 60 0.01
154 3 0.00
155 22 0.00
156 113 0.02
157 384 0.08
158 1434 0.31
159 2271 0.48
160 368 0.08
161 43 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (159 bp):
TTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATGGTGCAAAGAAAAGCTTTTCATGCA
AAACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGATTATGGTGCCCAATCCTAAAA
AGAATGGAGACTATTACGAGAATTCATGC
Found at i:45335 original size:22 final size:23
Alignment explanation
Indices: 45310--45371 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
45300 AAATTTTAGC
45310 ATTTTATCAAG-GGGAGAAAAAA
1 ATTTTATCAAGAGGGAGAAAAAA
*
45332 ATTTTATCAAGAGAGAGAAAAAA
1 ATTTTATCAAGAGGGAGAAAAAA
*
45355 ATTTTATTAAGAGGGAG
1 ATTTTATCAAGAGGGAG
45372 TTTTATTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 11 0.31
23 25 0.69
ACGTcount: A:0.48, C:0.03, G:0.23, T:0.26
Consensus pattern (23 bp):
ATTTTATCAAGAGGGAGAAAAAA
Found at i:46012 original size:13 final size:13
Alignment explanation
Indices: 45994--46020 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45984 ACACATTATG
45994 CTTTGTATCGATA
1 CTTTGTATCGATA
46007 CTTTGTATCGATA
1 CTTTGTATCGATA
46020 C
1 C
46021 ATGCTCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (13 bp):
CTTTGTATCGATA
Found at i:46033 original size:19 final size:20
Alignment explanation
Indices: 46009--46062 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
45999 TATCGATACT
46009 TTGTATCGATACATGCTC-A
1 TTGTATCGATACATGCTCAA
*
46028 TTGTATCGATACATACTCAA
1 TTGTATCGATACATGCTCAA
*
46048 TTTTATCGATACATG
1 TTGTATCGATACATG
46063 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGCTCAA
Found at i:48579 original size:46 final size:46
Alignment explanation
Indices: 48486--48603 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 46
48476 GAATTATTTC
* * *
48486 TTAATTTAATTTAATTTAAGATAAAA-CCTTTTATTTATCTATTAA
1 TTAATTTAATTTAATTAAAGATAAAATCCGTTTATTTATCTATAAA
* * * *
48531 TTAACTTAAGTTAATTAAAGATAAAATTCGTTTATTTATCTCTAAA
1 TTAATTTAATTTAATTAAAGATAAAATCCGTTTATTTATCTATAAA
* *
48577 TTAATTTAATTTGATTATAGATAAAAT
1 TTAATTTAATTTAATTAAAGATAAAAT
48604 AACTAGCTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
45 23 0.38
46 38 0.62
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (46 bp):
TTAATTTAATTTAATTAAAGATAAAATCCGTTTATTTATCTATAAA
Found at i:52652 original size:155 final size:155
Alignment explanation
Indices: 52162--52636 Score: 562
Period size: 155 Copynumber: 3.1 Consensus size: 155
52152 ATTTACCATC
* * *
52162 GACTTAGGAGTGC-CGAGTACGCCTAAAGGACTAAAAAAGGATTATAGATGGGATGAACCTATCC
1 GACTTAGAAGTGCTCGA-TACCCCTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCC
* * * * *
52226 TAAATACCCACCTTTGGCATAAAATCAAACTTGGTGACAACCTAAGACTC-AGTTCTAAAAAATT
65 TAAATACCCACCTTCGACATAAAACCAAACCTGGTGACAACCTAGGACTCGA-TTCTAAAAAATT
* * * * * *
52290 ACAAAAATGCCCTTAAGAGATACCTTC
129 ACGAAAATACCCCTAGGGGATACCTTT
* * * * *
52317 AACGTT-GAAGTGCTCGATACCCCTAAAGAACTTAAAAAGGGTGATAGATGGGATAAACCTATCC
1 GAC-TTAGAAGTGCTCGATACCCCTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCC
* **** * * * * *
52381 TAAATACCCACTTTCGACATAAAAGTGGACCCGGTGATAACCTAGAACTCGTTTCTAGAAAATTA
65 TAAATACCCACCTTCGACATAAAACCAAACCTGGTGACAACCTAGGACTCGATTCTAAAAAATTA
* *
52446 TGAAAATATCCCTAGGGGATACCTTT
130 CGAAAATACCCCTAGGGGATACCTTT
* * * *
52472 GACGTAGAAGTGCTCGATACCCCTAAAGGACTTAAAAAGAATTATAGATAGGATGAACCTATCTT
1 GACTTAGAAGTGCTCGATACCCCTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCCT
*
52537 AAATACCCACCTTCGACATAAAACCAAACCTAGTGACAACCTAGGACTCGATTCTAAAAAATTAC
66 AAATACCCACCTTCGACATAAAACCAAACCTGGTGACAACCTAGGACTCGATTCTAAAAAATTAC
*
52602 GAAAATACCCCTAGGGGATA-TTTT
131 GAAAATACCCCTAGGGGATACCTTT
52626 GACTTAGAAGT
1 GACTTAGAAGT
52637 ATCTCTCTAA
Statistics
Matches: 262, Mismatches: 54, Indels: 9
0.81 0.17 0.03
Matches are distributed among these distances:
154 14 0.05
155 243 0.93
156 5 0.02
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (155 bp):
GACTTAGAAGTGCTCGATACCCCTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCCT
AAATACCCACCTTCGACATAAAACCAAACCTGGTGACAACCTAGGACTCGATTCTAAAAAATTAC
GAAAATACCCCTAGGGGATACCTTT
Found at i:54653 original size:157 final size:156
Alignment explanation
Indices: 54394--54690 Score: 361
Period size: 157 Copynumber: 1.9 Consensus size: 156
54384 GAATTTCAAA
* * **
54394 AATTTTAAATCGAGAAAAATTTCTTTGAAAACATTTACGGAATAGAAAACTCGATTTTTTAGAAA
1 AATTTTAAATCGAGAAAAATCTCTCTGAAAACATTTACGGAATAGAAAACTCGATTTTCGAGAAA
* *** *
54459 CAAGGAAATTTCAAAGAAAAAAGGAAAATGGTATGAAAATAAATGAATTTTTCAAAACTAATTTA
66 CAAGGAAATTTCAAAGAAAAAACGAAAAAACTATGAAAATAAATAAATTTTTCAAAA-TAATTTA
*
54524 CTATGAATTAAATGACAATATTAGATG
130 ATATGAATTAAATGACAATATTAGATG
*
54551 AATTTTAAATCGAGAAAAATC-CTCCTGAAAACATTTATGGAATAGAAAACTCCG-TATTTCGA-
1 AATTTTAAATCGAGAAAAATCTCT-CTGAAAACATTTACGGAATAGAAAACT-CGAT-TTTCGAG
* * * * *
54613 AAACAA-GAGAATTT-TAAGAAAAAACTAAAAAACTCTTGAAAATAAATAAATTTTTTAAAATGA
63 AAACAAGGA-AATTTCAAAGAAAAAACGAAAAAACT-ATGAAAATAAATAAATTTTTCAAAATAA
54676 TTTAATATGAATTAA
126 TTTAATATGAATTAA
54691 CTAATAATAT
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
156 34 0.29
157 79 0.66
158 6 0.05
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (156 bp):
AATTTTAAATCGAGAAAAATCTCTCTGAAAACATTTACGGAATAGAAAACTCGATTTTCGAGAAA
CAAGGAAATTTCAAAGAAAAAACGAAAAAACTATGAAAATAAATAAATTTTTCAAAATAATTTAA
TATGAATTAAATGACAATATTAGATG
Found at i:55884 original size:13 final size:13
Alignment explanation
Indices: 55866--55891 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55856 ACACCAAAGT
55866 ATGTATCGATACA
1 ATGTATCGATACA
55879 ATGTATCGATACA
1 ATGTATCGATACA
55892 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:55889 original size:33 final size:33
Alignment explanation
Indices: 55847--55911 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
55837 TAGCCAAACT
* *
55847 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
55880 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
55912 TTAGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:56683 original size:3 final size:3
Alignment explanation
Indices: 56675--56724 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
56665 GATTAAACAA
56675 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
56723 AA
1 AA
56725 AATCAGTGGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:59704 original size:79 final size:79
Alignment explanation
Indices: 59506--59760 Score: 336
Period size: 79 Copynumber: 3.3 Consensus size: 79
59496 ACGGCATTGA
* *
59506 AGTAT-CCCTCAAAACTAACAGGGTTGGAGTATCCCCAATGGTAAAAAATTGATATTTTGGAAAT
1 AGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCAATGGTGAAAAATTGATATTTTGGAAAT
* *
59570 AAAAACGAGATT-G
66 AAAATCGAGGTTAG
* * * *
59583 AGTATCCCCTCGAAAATAAC-GGGATTAGAGTATCCCCAATGGTGAAAATTTGATATTTTAGAAA
1 AGTATCCCCTCAAAAATAACAGGG-TTGGAGTATCCCCAATGGTGAAAAATTGATATTTTGGAAA
59647 TAAAATCGAGGTTAG
65 TAAAATCGAGGTTAG
* * * * * *
59662 AGTATCTCCTCAAAAATAACAGGGTCGGTGCATCCCCGATGGTGAAAAATCGATATTTTGGAAAT
1 AGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCAATGGTGAAAAATTGATATTTTGGAAAT
59727 AAAATCGAGGTTAG
66 AAAATCGAGGTTAG
* *
59741 AATATCCCCTCAGAAATAAC
1 AGTATCCCCTCAAAAATAAC
59761 GGGATCGAGG
Statistics
Matches: 153, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
77 8 0.05
78 59 0.39
79 83 0.54
80 3 0.02
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (79 bp):
AGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCAATGGTGAAAAATTGATATTTTGGAAAT
AAAATCGAGGTTAG
Found at i:59890 original size:79 final size:79
Alignment explanation
Indices: 59798--60086 Score: 391
Period size: 79 Copynumber: 3.6 Consensus size: 79
59788 AGATAAAAAT
* * *
59798 GGGGTTAGAGTATCCCCAATGGTGAAAAATCAATATTTTGGAAATAAAAATGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATC
*
59863 CCCTTGGAAATAAT
66 CCCTTGGAAATAAC
* *
59877 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAACTAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATC
** *
59942 CCCACGGAACTAAC
66 CCCTTGGAAATAAC
* * *** * *
59956 GAGGTTGGAGCATCCTTGATGGTGAAAAATTGATATTTCGGAAATAAAAATAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATGGTGAAAAATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATC
*
60021 CTCTTGGAAATAAC
66 CCCTTGGAAATAAC
*
60035 GGGGTTGGAGTATCCCCAATGGTGAAAAAAATC-ATATTTTGGAAAAAAAAAT
1 GGGGTTGGAGTATCCCCAATGGTG--AAAAATCGATATTTTGGAAATAAAAAT
60087 CAATGAATTT
Statistics
Matches: 180, Mismatches: 28, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
79 157 0.87
80 17 0.09
81 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCAATGGTGAAAAATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATC
CCCTTGGAAATAAC
Found at i:60033 original size:274 final size:273
Alignment explanation
Indices: 59526--60037 Score: 652
Period size: 274 Copynumber: 1.9 Consensus size: 273
59516 AAAACTAACA
* **
59526 GGGTTGGAGTATCCCCAATGGTAAAAAATTGATATTTTGGAAATAAAAACGAGATTGAGTATCCC
1 GGGTTAGAGTATCCCCAATGGTAAAAAATCAATATTTTGGAAATAAAAACGAGATTGAGTATCCC
* * *
59591 CTCGAAAATAACGGGATTAGAGTATCCCCAATGGTGAAAATTTGATATTTTAGAAATAAAATCGA
66 CTCGAAAATAACGGGATTAGAGTATCCCCAATGGTGAAAAATCGATATTTTAGAAATAAAATAGA
* * * *
59656 GGTTAGAGTATCTCCTCAAAAATAACAGGGTCGGTGCATCCCCGATGGTGAAAAATCGATATTTT
131 GGTTAGAGTATCCCCACAAAAATAACAGGGTCGGAGCATCCCCGATGGTGAAAAATCGATATTTC
*
59721 GGAAATAAAATCGAGGTTAGAATATCCCCTCAGAAATAACGGGATCGAGGAAAAATCGATATTTT
196 GGAAATAAAATAGAGGTTAGAATATCCCCTCAGAAATAACGGGATCGAGGAAAAATCGATATTTT
59786 GGAGATAAAAATG
261 GGAGATAAAAATG
* * * *
59799 GGGTTAGAGTATCCCCAATGGTGAAAAATCAATATTTTGGAAATAAAAATGGGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCAATGGTAAAAAATCAATATTTTGGAAATAAAAACGAGATT-GAGTATCC
* * * * * * *
59864 CCTTGGAAATAATGGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAACTA
65 CCTCGAAAATAACGGGATTAGAGTATCCCCAATGGTGAAAAATCGATATTTTAGAAATAAAA-TA
* ** * * ** *
59929 G-GGTTGGAGTATCCCCACGGAACTAAC-GAGGTTGGAGCATCCTTGATGGTGAAAAATTGATAT
129 GAGGTTAGAGTATCCCCACAAAAATAACAG-GGTCGGAGCATCCCCGATGGTGAAAAATCGATAT
* * * **
59992 TTCGGAAATAAAAATAG-GGTTGGAGTATCCTCTTGGAAATAACGGG
193 TTCGGAAAT-AAAATAGAGGTTAGAATATCCCCTCAGAAATAACGGG
60038 GTTGGAGTAT
Statistics
Matches: 200, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
273 50 0.25
274 142 0.71
275 8 0.04
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (273 bp):
GGGTTAGAGTATCCCCAATGGTAAAAAATCAATATTTTGGAAATAAAAACGAGATTGAGTATCCC
CTCGAAAATAACGGGATTAGAGTATCCCCAATGGTGAAAAATCGATATTTTAGAAATAAAATAGA
GGTTAGAGTATCCCCACAAAAATAACAGGGTCGGAGCATCCCCGATGGTGAAAAATCGATATTTC
GGAAATAAAATAGAGGTTAGAATATCCCCTCAGAAATAACGGGATCGAGGAAAAATCGATATTTT
GGAGATAAAAATG
Found at i:60535 original size:19 final size:20
Alignment explanation
Indices: 60511--60564 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
60501 ATATCGATAC
***
60511 ATTGTATCGATACATG-TTT
1 ATTGTATCGATACATGCACA
60530 ATTGTATCGATACATGCACA
1 ATTGTATCGATACATGCACA
60550 ATTGTATCGATACAT
1 ATTGTATCGATACAT
60565 AAAACTGGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (20 bp):
ATTGTATCGATACATGCACA
Found at i:60649 original size:33 final size:33
Alignment explanation
Indices: 60594--60658 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
60584 TACCACTGTT
*
60594 TGTATCGATACATGGCACATTGTATTGATACAA
1 TGTATCGATACATGGCACATTGTATCGATACAA
60627 TGTATCGATACATGATG-A-ATTGTATCGATACA
1 TGTATCGATACATG--GCACATTGTATCGATACA
60659 TTGTCCCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATGGCACATTGTATCGATACAA
Found at i:63622 original size:14 final size:14
Alignment explanation
Indices: 63603--63629 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63593 AATTGCTCAC
63603 ATGTATCGATACAA
1 ATGTATCGATACAA
63617 ATGTATCGATACA
1 ATGTATCGATACA
63630 TTGAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
ATGTATCGATACAA
Found at i:63736 original size:20 final size:20
Alignment explanation
Indices: 63711--63844 Score: 103
Period size: 20 Copynumber: 6.7 Consensus size: 20
63701 AATTGTAAGC
63711 ATGTATCGATACATTTACTT
1 ATGTATCGATACATTTACTT
*
63731 ATGTATCGATACATTTTCTT
1 ATGTATCGATACATTTACTT
* * ** **
63751 A-GCA--GTATGCAAGGTGGTT
1 ATGTATCG-ATAC-ATTTACTT
* **
63770 TTGTATCGATACATTTTAGGT
1 ATGTATCGATACA-TTTACTT
*
63791 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTTACTT
63811 ATGTATCGATACATTTACTAT
1 ATGTATCGATACATTTACT-T
*
63832 GTGTATCGATACA
1 ATGTATCGATACA
63845 AATTGTAGAA
Statistics
Matches: 87, Mismatches: 20, Indels: 13
0.73 0.17 0.11
Matches are distributed among these distances:
17 1 0.01
18 3 0.03
19 6 0.07
20 45 0.52
21 31 0.36
22 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTACTT
Found at i:63797 original size:21 final size:21
Alignment explanation
Indices: 63771--63844 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
63761 AAGGTGGTTT
* *
63771 TGTATCGATACATTTTAGGTA
1 TGTATCGATACATTTCACGTA
*
63792 TGTATCGATACA-TTCACTTA
1 TGTATCGATACATTTCACGTA
63812 TGTATCGATACATTT-AC-TA
1 TGTATCGATACATTTCACGTA
63831 TGTGTATCGATACA
1 --TGTATCGATACA
63845 AATTGTAGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.04
20 19 0.40
21 26 0.55
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (21 bp):
TGTATCGATACATTTCACGTA
Found at i:63907 original size:70 final size:70
Alignment explanation
Indices: 63833--63984 Score: 286
Period size: 70 Copynumber: 2.2 Consensus size: 70
63823 ATTTACTATG
*
63833 TGTATCGATACAAATTGTAGAAATTTTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
1 TGTATCGATACAAATTATAGAAATTTTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
63898 AGGCA
66 AGGCA
*
63903 TGTATCGATACAAATTATAGAAATTTTAAATTTTTGACCGTTAGGACCTTGTATCGATACATCAA
1 TGTATCGATACAAATTATAGAAATTTTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
63968 AGGCA
66 AGGCA
63973 TGTATCGATACA
1 TGTATCGATACA
63985 TCTCAGTAAA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 80 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (70 bp):
TGTATCGATACAAATTATAGAAATTTTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
AGGCA
Found at i:64007 original size:70 final size:70
Alignment explanation
Indices: 63833--64007 Score: 235
Period size: 70 Copynumber: 2.5 Consensus size: 70
63823 ATTTACTATG
** * *
63833 TGTATCGATACAAATTGTAGAAATTTTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
1 TGTATCGATACAAATCATAGAAAATGTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
63898 AGGCA
66 AGGCA
* * * *
63903 TGTATCGATACAAATTATAGAAATTTTAAATTTTTGACCGTTAGGACCTTGTATCGATACATCAA
1 TGTATCGATACAAATCATAGAAAATGTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
63968 AGGCA
66 AGGCA
** *
63973 TGTATCGATACATCTCAGTA-AAAATGTAACTTTTT
1 TGTATCGATACAAATCA-TAGAAAATGTAAATTTTT
64008 CATACTTTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
70 94 0.98
71 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (70 bp):
TGTATCGATACAAATCATAGAAAATGTAAATTTTTGACCGTTAGGACCTTATATCGATACATCAA
AGGCA
Found at i:68016 original size:13 final size:13
Alignment explanation
Indices: 67998--68023 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67988 TACAGCAAGT
67998 ATGTATCGATACA
1 ATGTATCGATACA
68011 ATGTATCGATACA
1 ATGTATCGATACA
68024 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:70270 original size:21 final size:21
Alignment explanation
Indices: 70237--70281 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
70227 TTGCAAGTTG
*
70237 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
70259 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
70279 AAA
1 AAA
70282 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:74199 original size:20 final size:21
Alignment explanation
Indices: 74130--74207 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
74120 AATGTCCAAA
*
74130 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
74150 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
74175 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
74195 TTGTATCGATACA
1 ATGTATCGATACA
74208 GGGTGATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 30 0.64
24 3 0.06
25 14 0.30
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:76768 original size:13 final size:13
Alignment explanation
Indices: 76750--76775 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76740 TACAGCAAGT
76750 ATGTATCGATACA
1 ATGTATCGATACA
76763 ATGTATCGATACA
1 ATGTATCGATACA
76776 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:78085 original size:25 final size:25
Alignment explanation
Indices: 78035--78085 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
78025 GAATTTTTTG
** *
78035 TCATTTCTCAATTAAATTTTTTTTA
1 TCATTTCTCAATTAAATTGGTATTA
*
78060 TCATTTCTCAATTAAGTTGGTATTA
1 TCATTTCTCAATTAAATTGGTATTA
78085 T
1 T
78086 TAAACTCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (25 bp):
TCATTTCTCAATTAAATTGGTATTA
Found at i:79350 original size:21 final size:22
Alignment explanation
Indices: 79311--79352 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
79301 AAATAATAAT
*
79311 TTTATTTTATTACTATTATTTA
1 TTTATTTTATTAATATTATTTA
79333 TTTATTTT-TTAATATTATTT
1 TTTATTTTATTAATATTATTT
79353 TAATAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTATTTTATTAATATTATTTA
Found at i:80633 original size:18 final size:20
Alignment explanation
Indices: 80610--80646 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80600 AAGGGTTCAA
80610 TGGGGA-GAAG-GACGAAGT
1 TGGGGAGGAAGAGACGAAGT
80628 TGGGGAGGAAGAGACGAAG
1 TGGGGAGGAAGAGACGAAG
80647 GAAGGGATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.35, C:0.05, G:0.51, T:0.08
Consensus pattern (20 bp):
TGGGGAGGAAGAGACGAAGT
Found at i:90209 original size:27 final size:27
Alignment explanation
Indices: 90178--90235 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
90168 TTATAATAAA
*
90178 AAATTT-TATTTTAGTTT-TTGTATTATT
1 AAATTTATATTTTA-TTTATTATATT-TT
90205 AAATTTAATATTTTATTTATTATATTTT
1 AAATTT-ATATTTTATTTATTATATTTT
90233 AAA
1 AAA
90236 AATATTAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 6 0.22
28 8 0.30
29 13 0.48
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (27 bp):
AAATTTATATTTTATTTATTATATTTT
Found at i:90483 original size:14 final size:14
Alignment explanation
Indices: 90464--90515 Score: 77
Period size: 14 Copynumber: 3.6 Consensus size: 14
90454 TACTATAACT
90464 TTAAAATATAAAAA
1 TTAAAATATAAAAA
* *
90478 TTAAAATATTAAAT
1 TTAAAATATAAAAA
90492 TTAATAATATAAAAA
1 TTAA-AATATAAAAA
90507 TTAAAATAT
1 TTAAAATAT
90516 TTCTTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TTAAAATATAAAAA
Found at i:90488 original size:8 final size:8
Alignment explanation
Indices: 90464--90516 Score: 55
Period size: 7 Copynumber: 7.2 Consensus size: 8
90454 TACTATAACT
90464 TTAAAATA
1 TTAAAATA
90472 -TAAAA-A
1 TTAAAATA
90478 TTAAAATA
1 TTAAAATA
90486 TT-AAAT-
1 TTAAAATA
90492 TTAATAATA
1 TTAA-AATA
90501 -TAAAA-A
1 TTAAAATA
90507 TTAAAATA
1 TTAAAATA
90515 TT
1 TT
90517 TCTTTATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
6 4 0.11
7 22 0.58
8 12 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TTAAAATA
Found at i:91565 original size:21 final size:21
Alignment explanation
Indices: 91530--91585 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
91520 TTAAATTAAT
* *
91530 TAAATTTTTTTTATTTTATAAA
1 TAAA-TTTATTTATTTAATAAA
*
91552 TAAATTTATTTATTTAATAAG
1 TAAATTTATTTATTTAATAAA
91573 TAAAATTTATTTA
1 T-AAATTTATTTA
91586 AAAAATATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 15 0.50
22 15 0.50
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TAAATTTATTTATTTAATAAA
Found at i:91599 original size:29 final size:29
Alignment explanation
Indices: 91562--91618 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
91552 TAAATTTATT
*
91562 TATTTAATAAGTAAAATTT-ATTTAAAAAA
1 TATTTAATAAAT-AAATTTAATTTAAAAAA
91591 TATTTAATAAATAAATTTAAATTTAAAA
1 TATTTAATAAATAAATTT-AATTTAAAA
91619 TTTAATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 11 0.44
30 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (29 bp):
TATTTAATAAATAAATTTAATTTAAAAAA
Found at i:94685 original size:24 final size:25
Alignment explanation
Indices: 94647--94693 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
94637 TTTAAATACC
* *
94647 TAAATATATTTAATTTAATTAATTT
1 TAAATATAATTAATTGAATTAATTT
94672 TAAA-ATAATTAATTGAATTAAT
1 TAAATATAATTAATTGAATTAAT
94694 ATTACGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
TAAATATAATTAATTGAATTAATTT
Found at i:95577 original size:23 final size:23
Alignment explanation
Indices: 95546--95592 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
95536 ACATGAATAC
*
95546 TTTTGTTTTGACTCGTCTCTTGT
1 TTTTGTTTTGACTCGTCTCCTGT
*
95569 TTTTTTTTTGACTCGTCTCCTGT
1 TTTTGTTTTGACTCGTCTCCTGT
95592 T
1 T
95593 AGAGCTGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.04, C:0.19, G:0.15, T:0.62
Consensus pattern (23 bp):
TTTTGTTTTGACTCGTCTCCTGT
Found at i:96936 original size:53 final size:53
Alignment explanation
Indices: 96879--96984 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
96869 CCAGATTGAA
96879 AGATTTAAATTCAAGCTAATATTTGTCCTGATTTGTTGAAAGTTTTGGTTTTC
1 AGATTTAAATTCAAGCTAATATTTGTCCTGATTTGTTGAAAGTTTTGGTTTTC
*
96932 AGATTTAAATTCAAGCTAATATTTTTCCTGATTTGTTGAAAGTTTTGGTTTTC
1 AGATTTAAATTCAAGCTAATATTTGTCCTGATTTGTTGAAAGTTTTGGTTTTC
96985 TGGCTGGTTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.26, C:0.09, G:0.16, T:0.48
Consensus pattern (53 bp):
AGATTTAAATTCAAGCTAATATTTGTCCTGATTTGTTGAAAGTTTTGGTTTTC
Found at i:99939 original size:17 final size:17
Alignment explanation
Indices: 99917--99955 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
99907 ATTCTTATTC
* * *
99917 ATTAAGATTTTTTTCTT
1 ATTAAGAATATTTACTT
99934 ATTAAGAATATTTACTT
1 ATTAAGAATATTTACTT
99951 ATTAA
1 ATTAA
99956 ATAAACTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (17 bp):
ATTAAGAATATTTACTT
Found at i:100712 original size:17 final size:17
Alignment explanation
Indices: 100672--100713 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
100662 TTTTATACAT
* *
100672 TAAATTTTTTTATTAAA
1 TAAATTTATCTATTAAA
100689 -AATATTTATCTATTAAA
1 TAA-ATTTATCTATTAAA
100706 TAAATTTA
1 TAAATTTA
100714 AATATCAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 2 0.10
17 17 0.81
18 2 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TAAATTTATCTATTAAA
Found at i:101204 original size:21 final size:21
Alignment explanation
Indices: 101179--101219 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
101169 AAAATTAAAA
101179 ATTTTAT-ATTAATATTTATAT
1 ATTTTATAATTAA-ATTTATAT
101200 ATTTTATAATTAAATTTATA
1 ATTTTATAATTAAATTTATA
101220 ATAAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTATAATTAAATTTATAT
Found at i:103485 original size:11 final size:12
Alignment explanation
Indices: 103458--103486 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
103448 AACAAGTTTT
103458 ATATTTTAAATA
1 ATATTTTAAATA
103470 ATATTTTAAA-A
1 ATATTTTAAATA
103481 ATATTT
1 ATATTT
103487 AATATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATATTTTAAATA
Found at i:107401 original size:13 final size:13
Alignment explanation
Indices: 107383--107408 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107373 CAATTTTTTA
107383 TGTATCGATACAT
1 TGTATCGATACAT
107396 TGTATCGATACAT
1 TGTATCGATACAT
107409 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:109746 original size:21 final size:21
Alignment explanation
Indices: 109722--109768 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
109712 TTTGATGCTG
109722 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
109742 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
109763 ATTTTG
1 ATTTTG
109769 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:109907 original size:13 final size:13
Alignment explanation
Indices: 109889--109914 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
109879 ATAATCACCC
109889 TGTATCGATACAA
1 TGTATCGATACAA
109902 TGTATCGATACAA
1 TGTATCGATACAA
109915 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:112019 original size:15 final size:15
Alignment explanation
Indices: 111999--112029 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
111989 ATTTCGTTTG
*
111999 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
112014 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
112029 G
1 G
112030 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:113860 original size:21 final size:21
Alignment explanation
Indices: 113831--113875 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
113821 AAGTTTTCAT
*
113831 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
113851 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
113873 TTT
1 TTT
113876 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:116111 original size:13 final size:13
Alignment explanation
Indices: 116093--116118 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
116083 CAATTTTTTG
116093 TGTATCGATACAT
1 TGTATCGATACAT
116106 TGTATCGATACAT
1 TGTATCGATACAT
116119 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:116287 original size:14 final size:14
Alignment explanation
Indices: 116268--116294 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
116258 AGTCAACCTT
116268 AATGTATCGATACA
1 AATGTATCGATACA
116282 AATGTATCGATAC
1 AATGTATCGATAC
116295 TTTGATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
AATGTATCGATACA
Found at i:118858 original size:20 final size:20
Alignment explanation
Indices: 118829--118867 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
118819 TAAGTAAAAC
118829 TACTGAATGTATCAATACAA
1 TACTGAATGTATCAATACAA
* *
118849 TACTGTATGTATCGATACA
1 TACTGAATGTATCAATACA
118868 TGTGGTTGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
TACTGAATGTATCAATACAA
Found at i:118947 original size:21 final size:21
Alignment explanation
Indices: 118921--118981 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
118911 TTGATACAAG
118921 TGTAAATGTATCGATACATTA
1 TGTAAATGTATCGATACATTA
** *
118942 TGTAAATGTATAAATACATCA
1 TGTAAATGTATCGATACATTA
*
118963 TGT-ATTGTATCGATACATT
1 TGTAAATGTATCGATACATT
118982 TTGTTGGCAG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 12 0.36
21 21 0.64
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (21 bp):
TGTAAATGTATCGATACATTA
Found at i:122990 original size:37 final size:37
Alignment explanation
Indices: 122940--123012 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
122930 ACTTAATTTC
*
122940 TTACAAGCACCTACCTATTAGAGGCTTGAAAAGTTTG
1 TTACAAACACCTACCTATTAGAGGCTTGAAAAGTTTG
122977 TTACAAACACCTACCTATTAGAGGCTTGAAAAGTTT
1 TTACAAACACCTACCTATTAGAGGCTTGAAAAGTTT
123013 TTAAACACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (37 bp):
TTACAAACACCTACCTATTAGAGGCTTGAAAAGTTTG
Found at i:124110 original size:6 final size:6
Alignment explanation
Indices: 124065--124137 Score: 78
Period size: 6 Copynumber: 12.2 Consensus size: 6
124055 CCATTAAACT
* **
124065 AATTAA AAATAA AA-TAA AA-TAA AATTTAA GTTTCAA AATTAA AATTAA
1 AATTAA AATTAA AATTAA AATTAA AA-TTAA AATT-AA AATTAA AATTAA
*
124113 AATCAA AATTAA AATTAA AATTAA A
1 AATTAA AATTAA AATTAA AATTAA A
124138 TTTATTAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
5 10 0.18
6 40 0.70
7 7 0.12
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (6 bp):
AATTAA
Found at i:125952 original size:40 final size:41
Alignment explanation
Indices: 125908--126004 Score: 108
Period size: 41 Copynumber: 2.4 Consensus size: 41
125898 AACCGGGATG
125908 AAACCAATAAGTCAACTAAAAGT--AAAGATTGACCAGGACA
1 AAACCAATAAGTCAACTAAAAGTGAAAAG-TTGACCAGGACA
* * * * * *
125948 AAACCTACAAGTCAACTAAGAGTGAAAAGTTGATCGGGATA
1 AAACCAATAAGTCAACTAAAAGTGAAAAGTTGACCAGGACA
*
125989 AAACTAATAAGTCAAC
1 AAACCAATAAGTCAAC
126005 AAATGAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
40 20 0.43
41 22 0.48
42 4 0.09
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (41 bp):
AAACCAATAAGTCAACTAAAAGTGAAAAGTTGACCAGGACA
Found at i:126002 original size:41 final size:40
Alignment explanation
Indices: 125899--126004 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
125889 AAAAGGGTTA
* *
125899 ACCGGGATGAAACCAATAAGTCAACTAAAAGTAAAGATTG
1 ACCGGGATAAAACTAATAAGTCAACTAAAAGTAAAGATTG
* * * *
125939 ACCAGGACAAAACCT-ACAAGTCAACTAAGAGTGAAA-AGTTG
1 ACCGGGATAAAA-CTAATAAGTCAACTAAAAGT-AAAGA-TTG
*
125980 ATCGGGATAAAACTAATAAGTCAAC
1 ACCGGGATAAAACTAATAAGTCAAC
126005 AAATGAAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
40 27 0.52
41 25 0.48
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (40 bp):
ACCGGGATAAAACTAATAAGTCAACTAAAAGTAAAGATTG
Found at i:126664 original size:62 final size:62
Alignment explanation
Indices: 126487--126799 Score: 344
Period size: 62 Copynumber: 5.0 Consensus size: 62
126477 GCTGAAGTAG
** * * * * *
126487 AAGATCATGATGAAGAATATGTGG-TTCTATAATTTTCCATCAACAATCGAAACAAATTGAG
1 AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCGAAACAAACTGAT
* ** * *
126548 AAGATCATGATGGGGAA-ATGTGGTTTCTAAAATTTTCCATCAACAACCAAAACAAACTCAT
1 AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCGAAACAAACTGAT
* * * * * *
126609 AAGATTATGATGGGGAATATCTGGTTCCTGAAATTTCCCATCAATAGTCGAAACAAGCTGAT
1 AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCGAAACAAACTGAT
* *
126671 AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCAAAACAAATTGGAGT
1 AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCGAAACAAACT-GA-T
* * * *
126735 AGAAGATCATGATGGGGAATATGTAGTTTTTAAAATTTCCCATCAATAG-CTGAAACAAATTGAT
1 --AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTC-GAAACAAACTGAT
126799 A
1 A
126800 TCAAGGTGGA
Statistics
Matches: 214, Mismatches: 31, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
60 6 0.03
61 62 0.29
62 86 0.40
63 2 0.01
64 2 0.01
65 3 0.01
66 53 0.25
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (62 bp):
AAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCGAAACAAACTGAT
Found at i:126799 original size:128 final size:125
Alignment explanation
Indices: 126482--126799 Score: 383
Period size: 128 Copynumber: 2.5 Consensus size: 125
126472 GATAAGCTGA
** * * * * *
126482 AGTAGAAGATCATGATGAAGAATATGTGGTTCTATAATTTTCCATCAACAATCGAAACAAATTGA
1 AGTAGAAGATCATGATGGGGAATATGTGTTTCTAAAATTTCCCATCAATAGTCGAAACAAATTGA
*
126547 GAAGATCATGATGGGGAAATGTGGTTTCTAAAATTTTCCATCAACAACCAAAACAAACTC
66 TAAGATCATGATGGGGAAATGTGGTTTCTAAAATTTTCCATCAACAACCAAAACAAACTC
* * * * **
126607 A-T--AAGATTATGATGGGGAATATCTGGTTCCTGAAATTTCCCATCAATAGTCGAAACAAGCTG
1 AGTAGAAGATCATGATGGGGAATATGT-GTTTCTAAAATTTCCCATCAATAGTCGAAACAAATTG
* ** * *
126669 ATAAGATCATGATGGGGAATATGTGGTTTCTAAAATTTTCCATCAATAGTCAAAACAAATTGG
65 ATAAGATCATGATGGGGAA-ATGTGGTTTCTAAAATTTTCCATCAACAACCAAAACAAACT-C
*
126732 AGTAGAAGATCATGATGGGGAATATGTAGTTTTTAAAATTTCCCATCAATAG-CTGAAACAAATT
1 AGTAGAAGATCATGATGGGGAATATGT-GTTTCTAAAATTTCCCATCAATAGTC-GAAACAAATT
126796 GATA
64 GATA
126800 TCAAGGTGGA
Statistics
Matches: 159, Mismatches: 27, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
122 18 0.11
123 46 0.29
124 38 0.24
125 2 0.01
126 1 0.01
127 1 0.01
128 53 0.33
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (125 bp):
AGTAGAAGATCATGATGGGGAATATGTGTTTCTAAAATTTCCCATCAATAGTCGAAACAAATTGA
TAAGATCATGATGGGGAAATGTGGTTTCTAAAATTTTCCATCAACAACCAAAACAAACTC
Found at i:130161 original size:19 final size:20
Alignment explanation
Indices: 130137--130188 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
130127 CTGCAACTTT
130137 CATGTATCGATACA-ATGAA
1 CATGTATCGATACATATGAA
* *
130156 CATGTATCGATACATCTGGA
1 CATGTATCGATACATATGAA
*
130176 GATGTATCGATAC
1 CATGTATCGATAC
130189 TTTCTAGGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACATATGAA
Found at i:138300 original size:17 final size:19
Alignment explanation
Indices: 138282--138318 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
138272 ATGTATCGAT
138282 AAAA-TGTATCGATACATAA
1 AAAATTGTATCGATACAT-A
138301 AAAATTGTATCGATACAT
1 AAAATTGTATCGATACAT
138319 TGGCTTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (19 bp):
AAAATTGTATCGATACATA
Found at i:147080 original size:42 final size:42
Alignment explanation
Indices: 147025--147143 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
147015 TTCTTCTCTC
* *
147025 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
147067 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
147109 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
147144 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:147084 original size:12 final size:11
Alignment explanation
Indices: 147058--147133 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
147048 TCTATTATCT
*
147058 CTCCTGTCTCTC
1 CTCCTATCTC-C
147070 CTCCTATCATCC
1 CTCCTATC-TCC
147082 CTCCTATCT--
1 CTCCTATCTCC
*
147091 CTACTATCT--
1 CTCCTATCTCC
*
147100 CTCCTGTCTCTC
1 CTCCTATCTC-C
147112 CTCCTATCATCC
1 CTCCTATC-TCC
*
147124 CTCCTCTCTC
1 CTCCTATCTC
147134 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:147085 original size:24 final size:24
Alignment explanation
Indices: 147049--147134 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
147039 CCTCCTCTCT
* *
147049 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
147073 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
147094 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
147115 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
147135 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:147109 original size:18 final size:18
Alignment explanation
Indices: 147040--147110 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
147030 CCTGTCATCC
* *
147040 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
147058 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
147080 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
147100 CTCCTGTCTCT
1 CTCCTGTCTCT
147111 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:149009 original size:15 final size:15
Alignment explanation
Indices: 148989--149019 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
148979 TAAAAATGTC
*
148989 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
149004 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
149019 C
1 C
149020 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:151288 original size:20 final size:20
Alignment explanation
Indices: 151245--151290 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
151235 AAATCTTTTG
151245 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
151266 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
151286 CAAAA
1 CAAAA
151291 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:153424 original size:264 final size:264
Alignment explanation
Indices: 152948--153476 Score: 1040
Period size: 264 Copynumber: 2.0 Consensus size: 264
152938 TACCTTATTA
*
152948 AGGGGGAGATTTTTTAATAAAAGGGGAGAATGCGTAAATTTGCTAAAATTACCTTATTAAGGGGG
1 AGGGGGAGATTTTTTAATAAAAGGGGAGAATGCGTAAATTTGCTAAAATTACCTTACTAAGGGGG
153013 AGAATGTACGAACTTGTTAAAATTATTTTGTTTAAGGGAGAAAGAAAAGAAAAATGTAAAATTTT
66 AGAATGTACGAACTTGTTAAAATTATTTTGTTTAAGGGAGAAAGAAAAGAAAAATGTAAAATTTT
153078 GATTTTTGAAATCTACTAATGTGTTTCTTGAAGAAATGGAAGTCAGATTACAGGTTGATACAAGG
131 GATTTTTGAAATCTACTAATGTGTTTCTTGAAGAAATGGAAGTCAGATTACAGGTTGATACAAGG
*
153143 AGAATGATTGTAACACGAGCTTGAACATAATGGTAAGATCATTGAATGATACCCGAAAATACACA
196 AGAATGATTGCAACACGAGCTTGAACATAATGGTAAGATCATTGAATGATACCCGAAAATACACA
153208 TTTG
261 TTTG
153212 AGGGGGAGATTTTTTAATAAAAGGGGAGAATGCGTAAATTTGCTAAAATTACCTTACTAAGGGGG
1 AGGGGGAGATTTTTTAATAAAAGGGGAGAATGCGTAAATTTGCTAAAATTACCTTACTAAGGGGG
153277 AGAATGTACGAACTTGTTAAAATTATTTTGTTTAAGGGAGAAAGAAAAGAAAAATGTAAAATTTT
66 AGAATGTACGAACTTGTTAAAATTATTTTGTTTAAGGGAGAAAGAAAAGAAAAATGTAAAATTTT
153342 GATTTTTGAAATCTACTAATGTGTTTCTTGAAGAAATGGAAGTCAGATTACAGGTTGATACAAGG
131 GATTTTTGAAATCTACTAATGTGTTTCTTGAAGAAATGGAAGTCAGATTACAGGTTGATACAAGG
153407 AGAATGATTGCAACACGAGCTTGAACATAATGGTAAGATCATTGAATGATACCCGAAAATACACA
196 AGAATGATTGCAACACGAGCTTGAACATAATGGTAAGATCATTGAATGATACCCGAAAATACACA
153472 TTTG
261 TTTG
153476 A
1 A
153477 AAATTATGCC
Statistics
Matches: 263, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
264 263 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (264 bp):
AGGGGGAGATTTTTTAATAAAAGGGGAGAATGCGTAAATTTGCTAAAATTACCTTACTAAGGGGG
AGAATGTACGAACTTGTTAAAATTATTTTGTTTAAGGGAGAAAGAAAAGAAAAATGTAAAATTTT
GATTTTTGAAATCTACTAATGTGTTTCTTGAAGAAATGGAAGTCAGATTACAGGTTGATACAAGG
AGAATGATTGCAACACGAGCTTGAACATAATGGTAAGATCATTGAATGATACCCGAAAATACACA
TTTG
Found at i:153964 original size:13 final size:13
Alignment explanation
Indices: 153946--153971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
153936 TACACCAAGT
153946 ATGTATCGATACA
1 ATGTATCGATACA
153959 ATGTATCGATACA
1 ATGTATCGATACA
153972 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:153969 original size:32 final size:33
Alignment explanation
Indices: 153928--153991 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
153918 TAGCCAAACT
* **
153928 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
153960 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
153992 TTGGATTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:155782 original size:434 final size:435
Alignment explanation
Indices: 154930--155786 Score: 1482
Period size: 434 Copynumber: 2.0 Consensus size: 435
154920 AAGCTCAAGG
*
154930 ATGGATGAACCAAAAAGGGGGTGAATTGGTTCTTTTCAAAATTTAAAGGTTTCGTATGAATTGTT
1 ATGGATGAACCAAAAAGGGGGTGAATTGGTTCTTTTCAAAATTCAAAGGTTTCGTATGAATTGTT
* *
154995 TTGAAAACAACTTGAAAATAAAAAGAGTAGAGAAAAGAGAAAGCTCGACATAAGTGTTTATAGAG
66 TCGAAAACAACTTGAAAATAAAAAGAGTAGAGAAAAGAGAAAGCTCGACACAAGTGTTTATAGAG
*
155060 GTTCGGTTTAAACACAACACCTATGTCCTCTCTCATCGACACTTTCTTGTCGAGTGTTACCACAA
131 GTTCGGTCTAAACACAACACCTATGTCCTCTCTCATCGACACTTTCTTGTCGAGTGTTACCACAA
155125 TTAACTACACGAATTGATTACCTTTCAAGCAAAGGTATAACCTTACAACACTTTATATTTTCTAG
196 TTAACTACACGAATTGATTACCTTTCAAGCAAAGGTATAACCTTACAACACTTTATATTTTCTAG
* * **
155190 GCTAAGATAAAAAACCTCACAATTTTTTGAAGAATTATACCCCAAATCCTTGAGAAATTGTAACC
261 GCTAAGATAAAAAACCTCACAATCTCTCCAAGAATTATACCCCAAATCCTTGAGAAATTGTAACC
* *
155255 CAAGGTTGAATGCAACCCTACACAATTCAAGTAAATTGTACAAACGAAAATTGCCTCTGAATAGG
326 CAAGGTTGAATGCAACCCTACACAATTCAAGGAAATTGTACAAACGAAAATTGCCTCTAAATAGG
* *
155320 CTGATGTTTGTGAAAGAATAAACACAAATCAAAATTTAAAGGCTA
391 CTGATGCTTGAGAAAGAATAAACACAAATCAAAATTTAAAGGCTA
* * * * *
155365 ATGGATGAACCAAGAGGGGGGTGAATTGGTTTTTTTC-AAATTCAAAGGTTTTGTATGAGTTGTT
1 ATGGATGAACCAAAAAGGGGGTGAATTGGTTCTTTTCAAAATTCAAAGGTTTCGTATGAATTGTT
* *
155429 TCGAAAACAACTTGAAAATAAAAAGAGTAGGGAAAAGAGAAAGCTTGACACAAGTGTTTATAGAG
66 TCGAAAACAACTTGAAAATAAAAAGAGTAGAGAAAAGAGAAAGCTCGACACAAGTGTTTATAGAG
* *
155494 GTTCGGTCTAAACACAACACCTATGTCCTCTCTCCTCGACACTTTCTTGTCGAGTGTTACCACAT
131 GTTCGGTCTAAACACAACACCTATGTCCTCTCTCATCGACACTTTCTTGTCGAGTGTTACCACAA
* *
155559 TTCACTACATGAATTGATTACCTTTCAAGCAAAGGTATAACCTTACAACACTTTATATTTTCTAG
196 TTAACTACACGAATTGATTACCTTTCAAGCAAAGGTATAACCTTACAACACTTTATATTTTCTAG
*
155624 GCTAAGATAAAAAACCTCACAATCTCTCCAAGAATTATACCCCAAATTCTTGAGAAATTGTAACC
261 GCTAAGATAAAAAACCTCACAATCTCTCCAAGAATTATACCCCAAATCCTTGAGAAATTGTAACC
*
155689 CAAGGTTGAATGCAACCTTACACAATTCAAGGAAATTGTACAAACGAAAATTGCCTCTAAATAGG
326 CAAGGTTGAATGCAACCCTACACAATTCAAGGAAATTGTACAAACGAAAATTGCCTCTAAATAGG
155754 CTGATGCTTGAGAAAGAATAAACACAAATCAAA
391 CTGATGCTTGAGAAAGAATAAACACAAATCAAA
155787 TATAAAGAGC
Statistics
Matches: 397, Mismatches: 25, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
434 363 0.91
435 34 0.09
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (435 bp):
ATGGATGAACCAAAAAGGGGGTGAATTGGTTCTTTTCAAAATTCAAAGGTTTCGTATGAATTGTT
TCGAAAACAACTTGAAAATAAAAAGAGTAGAGAAAAGAGAAAGCTCGACACAAGTGTTTATAGAG
GTTCGGTCTAAACACAACACCTATGTCCTCTCTCATCGACACTTTCTTGTCGAGTGTTACCACAA
TTAACTACACGAATTGATTACCTTTCAAGCAAAGGTATAACCTTACAACACTTTATATTTTCTAG
GCTAAGATAAAAAACCTCACAATCTCTCCAAGAATTATACCCCAAATCCTTGAGAAATTGTAACC
CAAGGTTGAATGCAACCCTACACAATTCAAGGAAATTGTACAAACGAAAATTGCCTCTAAATAGG
CTGATGCTTGAGAAAGAATAAACACAAATCAAAATTTAAAGGCTA
Found at i:156114 original size:20 final size:20
Alignment explanation
Indices: 156089--156189 Score: 95
Period size: 20 Copynumber: 5.8 Consensus size: 20
156079 GTTCGGCATA
*
156089 ATGTATCAATACATTGTCCC
1 ATGTATCGATACATTGTCCC
156109 ATGTATCGATACA-------
1 ATGTATCGATACATTGTCCC
156122 ATGTATCGATACATTGTCCC
1 ATGTATCGATACATTGTCCC
156142 ATGTATCGATACA-------
1 ATGTATCGATACATTGTCCC
156155 ATGTATCGATACATTGTCCC
1 ATGTATCGATACATTGTCCC
156175 ATGTATCGATACATT
1 ATGTATCGATACATT
156190 TCACTTAGGG
Statistics
Matches: 66, Mismatches: 1, Indels: 28
0.69 0.01 0.29
Matches are distributed among these distances:
13 26 0.39
20 40 0.61
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTGTCCC
Found at i:156127 original size:13 final size:13
Alignment explanation
Indices: 156109--156167 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
156099 ACATTGTCCC
156109 ATGTATCGATACA
1 ATGTATCGATACA
156122 ATGTATCGATAC-
1 ATGTATCGATACA
* *
156134 A--T-T-G-TCCC
1 ATGTATCGATACA
156142 ATGTATCGATACA
1 ATGTATCGATACA
156155 ATGTATCGATACA
1 ATGTATCGATACA
156168 TTGTCCCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 1 0.03
10 2 0.05
11 1 0.03
12 2 0.05
13 27 0.73
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:156134 original size:33 final size:33
Alignment explanation
Indices: 156088--156187 Score: 191
Period size: 33 Copynumber: 3.0 Consensus size: 33
156078 CGTTCGGCAT
*
156088 AATGTATCAATACATTGTCCCATGTATCGATAC
1 AATGTATCGATACATTGTCCCATGTATCGATAC
156121 AATGTATCGATACATTGTCCCATGTATCGATAC
1 AATGTATCGATACATTGTCCCATGTATCGATAC
156154 AATGTATCGATACATTGTCCCATGTATCGATAC
1 AATGTATCGATACATTGTCCCATGTATCGATAC
156187 A
1 A
156188 TTTCACTTAG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (33 bp):
AATGTATCGATACATTGTCCCATGTATCGATAC
Found at i:159511 original size:52 final size:52
Alignment explanation
Indices: 159426--159547 Score: 199
Period size: 52 Copynumber: 2.3 Consensus size: 52
159416 ATATGAAAAG
* * *
159426 TTGCTTGCATGTATTGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
159478 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
159530 TTGCCTACATGTATCGAT
1 TTGCCTGCATGTATCGAT
159548 TCAAAGATCA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:159561 original size:52 final size:52
Alignment explanation
Indices: 159433--159568 Score: 168
Period size: 52 Copynumber: 2.6 Consensus size: 52
159423 AAGTTGCTTG
* * * *
159433 CATGTATTGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACA-TAAGATAATGTATCGATACATCTGGGCAAATTTGCCTA
***
159485 CATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTA
1 CATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAATTTGCCTA
*
159537 CATGTATCGATTCA-AAGATCAATGTATCGATA
1 CATGTATCGATACATAAGAT-AATGTATCGATA
159569 TAATGTATCG
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
51 4 0.05
52 70 0.95
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (52 bp):
CATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAATTTGCCTA
Found at i:159575 original size:13 final size:13
Alignment explanation
Indices: 159557--159581 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
159547 TTCAAAGATC
159557 AATGTATCGATAT
1 AATGTATCGATAT
159570 AATGTATCGATA
1 AATGTATCGATA
159582 CATTTTTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:159640 original size:33 final size:33
Alignment explanation
Indices: 159603--159669 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
159593 AGTAGCTTAA
159603 ATTGTATCAATACAAAAAAATATGTATCGATAC
1 ATTGTATCAATACAAAAAAATATGTATCGATAC
* * ***
159636 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCAATACAAAAAAATATGTATCGATAC
159669 A
1 A
159670 AATCATTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (33 bp):
ATTGTATCAATACAAAAAAATATGTATCGATAC
Found at i:159643 original size:13 final size:13
Alignment explanation
Indices: 159625--159649 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
159615 CAAAAAAATA
159625 TGTATCGATACAT
1 TGTATCGATACAT
159638 TGTATCGATACA
1 TGTATCGATACA
159650 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:161023 original size:84 final size:80
Alignment explanation
Indices: 160799--161035 Score: 239
Period size: 78 Copynumber: 2.9 Consensus size: 80
160789 CTTTGAAGGG
* * * *
160799 ATACTCCAACCTTGCTTTTCTTACAAAAAATCTTGAATTTACATTCTCAGGG--ACTTAACACAT
1 ATACTCCAACCCTGTTTTTCTTACAAAAAATCTTGAATTTACATTCTCAGGGATACTCAACCCAT
*
160862 CTTTCCAAAAATGGA
66 CTCTCCAAAAATGGA
* *** * * * **
160877 ATACTTCAATTTTGTTTTTCTTACAAAAAATCTTAAATTTAAATTTTTGGGGATACTTCAACCTC
1 ATACTCCAACCCTGTTTTTCTTACAAAAAATCTTGAATTTACATTCTCAGGGATAC-TCAACC-C
160942 ATCTCTCCAAAACATGG-
64 ATCTCTCCAAAA-ATGGA
*
160959 ATAGTCCAACCCCT-TTTTTCTTACGAAAAAAATCTTGAATTTACATTCTCAGGGATACTCCAAC
1 ATACTCCAA-CCCTGTTTTTCTTAC--AAAAAATCTTGAATTTACATTCTCAGGGATACT-CAAC
*
161023 CCATTTCTCCAAA
62 CCATCTCTCCAAA
161036 GAGGGATACT
Statistics
Matches: 127, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
78 43 0.34
80 2 0.02
81 4 0.03
82 29 0.23
83 17 0.13
84 32 0.25
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.35
Consensus pattern (80 bp):
ATACTCCAACCCTGTTTTTCTTACAAAAAATCTTGAATTTACATTCTCAGGGATACTCAACCCAT
CTCTCCAAAAATGGA
Found at i:170643 original size:24 final size:24
Alignment explanation
Indices: 170610--170695 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
170600 AAGAGAAAGA
*
170610 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
170634 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
170652 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* * *
170676 AGAGACGGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
170696 AGAGAGGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 11 0.23
20 2 0.04
21 6 0.12
22 2 0.04
24 27 0.56
ACGTcount: A:0.41, C:0.02, G:0.47, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:170662 original size:42 final size:42
Alignment explanation
Indices: 170601--170719 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
170591 TAGCCCTCAA
* *
170601 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
170643 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACGGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
170685 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
170720 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:177732 original size:13 final size:13
Alignment explanation
Indices: 177692--177744 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
177682 CCGTTACAAG
177692 CAATGTATCGATA
1 CAATGTATCGATA
177705 CAA--T-TC-AT-
1 CAATGTATCGATA
177713 C-ATGTATCGATA
1 CAATGTATCGATA
177725 CAATGTATCGATA
1 CAATGTATCGATA
177738 CAATGTA
1 CAATGTA
177745 CCATGTATCG
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 21 0.62
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:177732 original size:33 final size:33
Alignment explanation
Indices: 177692--177760 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
177682 CCGTTACAAG
*
177692 CAATGTATCGATACAAT-TCATCATGTATCGATA
1 CAATGTATCGATACAATGT-ACCATGTATCGATA
177725 CAATGTATCGATACAATGTACCATGTATCGATA
1 CAATGTATCGATACAATGTACCATGTATCGATA
177758 CAA
1 CAA
177761 ACAGTGATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (33 bp):
CAATGTATCGATACAATGTACCATGTATCGATA
Found at i:177828 original size:13 final size:13
Alignment explanation
Indices: 177810--177836 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
177800 ACAATTGTCC
177810 ATGTATCGATACA
1 ATGTATCGATACA
177823 ATGTATCGATACA
1 ATGTATCGATACA
177836 A
1 A
177837 AGCATGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:184573 original size:13 final size:13
Alignment explanation
Indices: 184555--184581 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
184545 ACATCTTGCT
184555 TTGTATCGATACA
1 TTGTATCGATACA
184568 TTGTATCGATACA
1 TTGTATCGATACA
184581 T
1 T
184582 GCTCACTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:184695 original size:33 final size:33
Alignment explanation
Indices: 184630--184696 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
184620 TTATCATTAT
*
184630 TTGTATCGATACATGGTACAATATATCAATACA
1 TTGTATCGATACATGATACAATATATCAATACA
* *
184663 TTGTATCGATACATGATGA-AATGTATCGATACA
1 TTGTATCGATACATGAT-ACAATATATCAATACA
184696 T
1 T
184697 AGCTTGTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGATACAATATATCAATACA
Found at i:193170 original size:15 final size:15
Alignment explanation
Indices: 193152--193205 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
193142 CTTCTTCTCT
*
193152 CCTCCTCCTGTCATC
1 CCTCCTCCTATCATC
*
193167 CCTCCTCTCTCTATTATC
1 CCT-C-CTC-CTATCATC
*
193185 TCTCCTCCTATCATC
1 CCTCCTCCTATCATC
193200 CCTCCT
1 CCTCCT
193206 ATCTCTACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 15 0.48
16 4 0.13
17 4 0.13
18 8 0.26
ACGTcount: A:0.09, C:0.50, G:0.02, T:0.39
Consensus pattern (15 bp):
CCTCCTCCTATCATC
Found at i:193189 original size:18 final size:18
Alignment explanation
Indices: 193168--193229 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
193158 CCTGTCATCC
193168 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATTATCT
* *
193186 CT-C-CTC-CTATCATCC
1 CTCCTCTCTCTATTATCT
* *
193201 CTCCTATCTCTACTATCT
1 CTCCTCTCTCTATTATCT
*
193219 CTCCTGTCTCT
1 CTCCTCTCTCT
193230 CCTCCTATCA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
15 9 0.26
16 4 0.12
17 3 0.09
18 18 0.53
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.44
Consensus pattern (18 bp):
CTCCTCTCTCTATTATCT
Found at i:193199 original size:33 final size:33
Alignment explanation
Indices: 193153--193223 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
193143 TTCTTCTCTC
* * *
193153 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
193186 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
193219 CTCCT
1 CTCCT
193224 GTCTCTCCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.46, G:0.01, T:0.41
Consensus pattern (33 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCT
Found at i:193203 original size:12 final size:11
Alignment explanation
Indices: 193181--193252 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
193171 CTCTCTCTAT
193181 TATCTCTCCTCC
1 TATCTC-CCTCC
193193 TATCATCCCTCC
1 TATC-TCCCTCC
*
193205 TATCT--CTAC
1 TATCTCCCTCC
193214 TATCT--CTCC
1 TATCTCCCTCC
*
193223 TGTCTCTCCTCC
1 TATCTC-CCTCC
193235 TATCATCCCTCC
1 TATC-TCCCTCC
*
193247 TCTCTC
1 TATCTC
193253 TTCTTTCTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
9 15 0.30
11 3 0.06
12 28 0.56
13 4 0.08
ACGTcount: A:0.11, C:0.47, G:0.01, T:0.40
Consensus pattern (11 bp):
TATCTCCCTCC
Found at i:193229 original size:42 final size:42
Alignment explanation
Indices: 193183--193262 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
193173 CTCTCTATTA
193183 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
* * *
193225 TCTCTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
193263 TTGAGGGCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.09, C:0.46, G:0.01, T:0.44
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
Found at i:197732 original size:20 final size:22
Alignment explanation
Indices: 197688--197734 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
197678 AATTTTCCAT
197688 AAAT-TTTCACTTTTTCACTTCA
1 AAATCTTTCACTTTTTCAC-TCA
197710 AAATCTTTCA-TTTTTCA-TCA
1 AAATCTTTCACTTTTTCACTCA
197730 AAATC
1 AAATC
197735 ATCAACAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.33
22 11 0.46
23 5 0.21
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATCTTTCACTTTTTCACTCA
Found at i:199458 original size:18 final size:18
Alignment explanation
Indices: 199432--199471 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
199422 TTTTTAATAT
*
199432 AGGGGAAATAACCGTTTA
1 AGGGAAAATAACCGTTTA
199450 AGGGAAAATAACCGTTTA
1 AGGGAAAATAACCGTTTA
199468 AGGG
1 AGGG
199472 GGAGAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.30, T:0.20
Consensus pattern (18 bp):
AGGGAAAATAACCGTTTA
Found at i:202518 original size:13 final size:13
Alignment explanation
Indices: 202500--202530 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
202490 ACAATTCATC
202500 ATGTATCGATACA
1 ATGTATCGATACA
202513 ATGTATCGATACA
1 ATGTATCGATACA
202526 ATGTA
1 ATGTA
202531 CCATGTATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:202619 original size:19 final size:19
Alignment explanation
Indices: 202574--202630 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
202564 ATTGCCAGTT
* **
202574 TCATTTATCGATACAATTT
1 TCATGTATCGATACAATGA
202593 TCCATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
202613 TCATGTATCGATACAATG
1 TCATGTATCGATACAATG
202631 TATCGATACA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:202633 original size:13 final size:13
Alignment explanation
Indices: 202615--202641 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
202605 TACAATGATC
202615 ATGTATCGATACA
1 ATGTATCGATACA
202628 ATGTATCGATACA
1 ATGTATCGATACA
202641 A
1 A
202642 AGCGTGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:203771 original size:13 final size:13
Alignment explanation
Indices: 203753--203778 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
203743 CTATTTATGA
203753 TGTATCGATACAC
1 TGTATCGATACAC
203766 TGTATCGATACAC
1 TGTATCGATACAC
203779 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:203923 original size:22 final size:22
Alignment explanation
Indices: 203868--203923 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
203858 ACAATGACCT
203868 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
203890 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
203911 ATGAACAGTGATG
1 ATGAACAGTGATG
203924 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:203930 original size:10 final size:10
Alignment explanation
Indices: 203911--203941 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
203901 GTATCGATAC
*
203911 ATGAACAGTG
1 ATGAATAGTG
203921 ATGAATAGTG
1 ATGAATAGTG
203931 ATGAATAGTG
1 ATGAATAGTG
203941 A
1 A
203942 AAATGAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.29, T:0.26
Consensus pattern (10 bp):
ATGAATAGTG
Found at i:204029 original size:53 final size:53
Alignment explanation
Indices: 203965--204101 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
203955 CTACTTCCAA
* *
203965 TGTATCGATACATATTTTTTGTATCGATACAAGTTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
204018 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
204071 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
204102 TATGCAATTT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 65 0.83
54 13 0.17
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:204207 original size:21 final size:21
Alignment explanation
Indices: 204181--204221 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
204171 GTCAACCTTG
204181 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
204202 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
204222 TTTTACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Done.