Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold226
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1170647
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 8 of 8
Found at i:999400 original size:16 final size:16
Alignment explanation
Indices: 999379--999412 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
999369 ATTTAATTTT
999379 ATAATAA-TCAAAAGAA
1 ATAATAAGT-AAAAGAA
999395 ATAATAAGTAAAAGAA
1 ATAATAAGTAAAAGAA
999411 AT
1 AT
999413 GTAGGTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.94
17 1 0.06
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (16 bp):
ATAATAAGTAAAAGAA
Found at i:1000428 original size:2 final size:2
Alignment explanation
Indices: 1000423--1000455 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1000413 AAATGAACAG
1000423 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1000456 ATTTGTTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1000889 original size:2 final size:2
Alignment explanation
Indices: 1000882--1000907 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1000872 AATTTTATTT
1000882 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1000908 CACCAAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1004137 original size:21 final size:21
Alignment explanation
Indices: 1004106--1004180 Score: 105
Period size: 21 Copynumber: 3.5 Consensus size: 21
1004096 ATTTTTAGAT
1004106 AAAATAATGTATTGGTTGGATG
1 AAAA-AATGTATTGGTTGGATG
1004128 AAAAAATGTATTGGTTGGATG
1 AAAAAATGTATTGGTTGGATG
** *
1004149 AAAAAATGTATTTTTTAGATG
1 AAAAAATGTATTGGTTGGATG
1004170 AAAAAAATGTA
1 -AAAAAATGTA
1004181 ACTTTTAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
21 35 0.71
22 14 0.29
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (21 bp):
AAAAAATGTATTGGTTGGATG
Found at i:1004186 original size:22 final size:21
Alignment explanation
Indices: 1004124--1004187 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
1004114 GTATTGGTTG
*
1004124 GATGAAAAAATGT-A-TTGGTTG
1 GATGAAAAAATGTAACTT--TTA
**
1004145 GATGAAAAAATGTATTTTTTA
1 GATGAAAAAATGTAACTTTTA
1004166 GATGAAAAAAATGTAACTTTTA
1 GATG-AAAAAATGTAACTTTTA
1004188 ATTTTATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 19 0.53
22 15 0.42
23 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.36
Consensus pattern (21 bp):
GATGAAAAAATGTAACTTTTA
Found at i:1009151 original size:19 final size:20
Alignment explanation
Indices: 1009113--1009155 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
1009103 GCTGATTGTC
1009113 TATTATTAATTTATTTATAA
1 TATTATTAATTTATTTATAA
1009133 TATTATT-ATTT-TTTAATAA
1 TATTATTAATTTATTT-ATAA
1009152 TATT
1 TATT
1009156 GTTAGGGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.14
19 12 0.55
20 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTATTAATTTATTTATAA
Found at i:1009257 original size:17 final size:17
Alignment explanation
Indices: 1009211--1009257 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 17
1009201 TTTTTAATTA
1009211 ATAAATAAT-ATATTATT
1 ATAAA-AATAATATTATT
1009228 ATAAAAGATAATATTATT
1 ATAAAA-ATAATATTATT
1009246 ATAAAAATAATA
1 ATAAAAATAATA
1009258 ATTTTCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.04
17 13 0.46
18 14 0.50
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
ATAAAAATAATATTATT
Found at i:1009258 original size:20 final size:20
Alignment explanation
Indices: 1009213--1009274 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 20
1009203 TTTAATTAAT
1009213 AAATAAT-ATATTATTAT-A
1 AAATAATAATATTATTATAA
*
1009231 AAA-GATAATATTATTATAA
1 AAATAATAATATTATTATAA
*
1009250 AAATAATAATTTTCATTATTAA
1 AAATAATAATATT-ATTA-TAA
1009272 AAA
1 AAA
1009275 AATTATTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 2 0.06
18 13 0.36
19 4 0.11
20 7 0.19
21 4 0.11
22 6 0.17
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
AAATAATAATATTATTATAA
Found at i:1010010 original size:13 final size:13
Alignment explanation
Indices: 1009992--1010038 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
1009982 AAAGTAATAA
*
1009992 TATTTTGATAATT
1 TATTTTAATAATT
1010005 TATTTTAAATTAATAT
1 TATTTT-AA-TAAT-T
1010021 TATTTTAATAATT
1 TATTTTAATAATT
1010034 TATTT
1 TATTT
1010039 AAAAACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 12 0.40
14 5 0.17
15 6 0.20
16 7 0.23
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TATTTTAATAATT
Found at i:1012288 original size:19 final size:19
Alignment explanation
Indices: 1012264--1012302 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1012254 TAATAATCGT
*
1012264 ATTTGATCGGATCCCAAGA
1 ATTTGATCGGAACCCAAGA
1012283 ATTTGATCGGAACCCAAGA
1 ATTTGATCGGAACCCAAGA
1012302 A
1 A
1012303 ATACATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (19 bp):
ATTTGATCGGAACCCAAGA
Found at i:1013424 original size:2 final size:2
Alignment explanation
Indices: 1013419--1013475 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
1013409 ATTCAATTTG
1013419 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1013461 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
1013476 CACACACATG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1013684 original size:127 final size:128
Alignment explanation
Indices: 1013446--1013691 Score: 347
Period size: 127 Copynumber: 1.9 Consensus size: 128
1013436 TATATATATA
* *
1013446 TATATATATATATATATATATATATATATACACACACATGCGTGTAGGCATATAATATATTTTAG
1 TATATATATATATATATATATATACATATACACACACATGCGTGCAGGCATATAATATATTTTAG
* * * *
1013511 AAAATTTGGAAATGAACTTTATAATTCAATTATATATTTCATATATA-ATAATAGTATAGAAG
66 AAAATTTGGAAATGAACTTTATAATTCAAATATAGATATCAAATATATATAATAGTATAGAAG
* * **
1013573 TATATATATGTA-ATTTGATATATACATATATGCACACATGCGTGCAGGCATATAATATATTTTA
1 TATATATATATATATAT-ATATATACATATACACACACATGCGTGCAGGCATATAATATATTTTA
1013637 GAAAATTTGGAAATGAACTTTATAAATAT-AAATATAGATAT-AAATATATATAATA
65 GAAAATTTGGAAATGAACTTTAT-AAT-TCAAATATAGATATCAAATATATATAATA
1013692 TTTAAAAAAT
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
126 3 0.03
127 83 0.79
128 18 0.17
129 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (128 bp):
TATATATATATATATATATATATACATATACACACACATGCGTGCAGGCATATAATATATTTTAG
AAAATTTGGAAATGAACTTTATAATTCAAATATAGATATCAAATATATATAATAGTATAGAAG
Found at i:1014422 original size:12 final size:13
Alignment explanation
Indices: 1014405--1014446 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
1014395 TATATTACAT
1014405 TTTTTAATT-TTA
1 TTTTTAATTATTA
1014417 TTTTTATATTATTA
1 TTTTTA-ATTATTA
*
1014431 TTTATAATTATT-
1 TTTTTAATTATTA
1014443 TTTT
1 TTTT
1014447 ATTTCATCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 9 0.35
13 9 0.35
14 8 0.31
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTAATTATTA
Found at i:1020651 original size:2 final size:2
Alignment explanation
Indices: 1020644--1020683 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
1020634 GATGAAGTTG
* * *
1020644 AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1020684 CATGACTATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1025916 original size:21 final size:21
Alignment explanation
Indices: 1025892--1025934 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1025882 GGATTTTTTT
1025892 ACATTTGGTGCAAATTCTAAA
1 ACATTTGGTGCAAATTCTAAA
1025913 ACATTTGGTGCAAATTCTAAA
1 ACATTTGGTGCAAATTCTAAA
1025934 A
1 A
1025935 ATTAAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (21 bp):
ACATTTGGTGCAAATTCTAAA
Found at i:1028966 original size:20 final size:22
Alignment explanation
Indices: 1028943--1028987 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
1028933 AATAAATAAA
* *
1028943 AATATCAATAA-AAATGAA-AT
1 AATAACAATAATAAAAGAATAT
1028963 AATAACAATAATAAAAGAATAT
1 AATAACAATAATAAAAGAATAT
1028985 AAT
1 AAT
1028988 TATTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 6 0.29
22 5 0.24
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (22 bp):
AATAACAATAATAAAAGAATAT
Found at i:1032771 original size:18 final size:16
Alignment explanation
Indices: 1032738--1032772 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1032728 TTTAAAAATA
1032738 TAAATAATTTTTTAAT
1 TAAATAATTTTTTAAT
1032754 TAAATAATATTATTTAAT
1 TAAATAAT-TT-TTTAAT
1032772 T
1 T
1032773 TGTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 2 0.12
18 7 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAAATAATTTTTTAAT
Found at i:1036280 original size:2 final size:2
Alignment explanation
Indices: 1036273--1036303 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1036263 ATTAATATTT
1036273 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1036304 TCTTTTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1038551 original size:73 final size:71
Alignment explanation
Indices: 1038464--1038630 Score: 190
Period size: 72 Copynumber: 2.3 Consensus size: 71
1038454 CACAGTTTAA
* * * **
1038464 AATAAAAATTACTATTTTTACCAGCGACAAGTTTAGAACAAAAATTACTATTCTTATCGGTGGTA
1 AATAAAAATCACTATTTTTACCAGCGACAAG-TTAGAAAAAAAATTACTATTCTTATCGATGACA
1038529 CAGATCGG
65 CAGATC-G
* ** * * *
1038537 AATAAAAATCACTATTCTTACTGGTGACATGTTCGAAAAAAAATTACTATTCTTATCGATGACAC
1 AATAAAAATCACTATTTTTACCAGCGACAAGTTAGAAAAAAAATTACTATTCTTATCGATGACAC
1038602 AGATCG
66 AGATCG
* *
1038608 AGACAAAAACCACTATTTTTACC
1 A-ATAAAAATCACTATTTTTACC
1038631 GGTGACACCG
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
71 2 0.03
72 51 0.65
73 25 0.32
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.31
Consensus pattern (71 bp):
AATAAAAATCACTATTTTTACCAGCGACAAGTTAGAAAAAAAATTACTATTCTTATCGATGACAC
AGATCG
Found at i:1038589 original size:72 final size:72
Alignment explanation
Indices: 1038503--1038637 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
1038493 AGTTTAGAAC
* ** * * *
1038503 AAAAATTACTATTCTTATCGGTGGTACAGATCG-GAATAAAAATCACTATTCTTACTGGTGACAT
1 AAAAATTACTATTCTTATCGATGACACAGATCGAG-ACAAAAACCACTATTCTTACCGGTGACAT
1038567 GTTCGAAA
65 GTTCGAAA
*
1038575 AAAAATTACTATTCTTATCGATGACACAGATCGAGACAAAAACCACTATTTTTACCGGTGACA
1 AAAAATTACTATTCTTATCGATGACACAGATCGAGACAAAAACCACTATTCTTACCGGTGACA
1038638 CCGATCGGAG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 54 0.98
73 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (72 bp):
AAAAATTACTATTCTTATCGATGACACAGATCGAGACAAAAACCACTATTCTTACCGGTGACATG
TTCGAAA
Found at i:1038600 original size:35 final size:35
Alignment explanation
Indices: 1038503--1038665 Score: 116
Period size: 37 Copynumber: 4.5 Consensus size: 35
1038493 AGTTTAGAAC
*
1038503 AAAAATTACTATTCTTATCGGTGGTACAGATCGGAAT
1 AAAAATTACTATTCTTATCGGT-G-ACAGATCGGAAA
* *
1038540 AAAAATCACTATTCTTA-CTGGTGACATGTTC-GAAA
1 AAAAATTACTATTCTTATC-GGTGACA-GATCGGAAA
* *
1038575 AAAAATTACTATTCTTATCGATGACACAGATC-GAGAC
1 AAAAATTACTATTCTTATCGGTG--ACAGATCGGA-AA
** * * **
1038612 AAAAACCACTATTTTTACCGGTGACACCGATCGGAGC
1 AAAAATTACTATTCTTATCGGTGACA--GATCGGAAA
*
1038649 AAAAATTACTAATCTTA
1 AAAAATTACTATTCTTA
1038666 CTGATGGTAC
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
35 28 0.28
36 11 0.11
37 59 0.59
38 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (35 bp):
AAAAATTACTATTCTTATCGGTGACAGATCGGAAA
Found at i:1039506 original size:15 final size:17
Alignment explanation
Indices: 1039473--1039554 Score: 71
Period size: 17 Copynumber: 4.9 Consensus size: 17
1039463 GCTATGATAA
*
1039473 ATATTAAATATAAATAT
1 ATATTTAATATAAATAT
1039490 ATATTTAATATAAATAT
1 ATATTTAATATAAATAT
* * * *
1039507 ATTTTTTAATTTTATTAT
1 A-TATTTAATATAAATAT
*
1039525 ATGTTTAA-AT-AAT-T
1 ATATTTAATATAAATAT
1039539 ATATTATAATATAAAT
1 ATATT-TAATATAAAT
1039555 TTTAGGCGTG
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
14 5 0.10
15 5 0.10
16 3 0.06
17 26 0.50
18 13 0.25
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (17 bp):
ATATTTAATATAAATAT
Found at i:1039838 original size:2 final size:2
Alignment explanation
Indices: 1039831--1039856 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1039821 TCGACATTAA
1039831 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1039857 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1042619 original size:22 final size:22
Alignment explanation
Indices: 1042584--1042625 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
1042574 TATTTTTATT
1042584 TAAATTTAATTATAAAAATATA
1 TAAATTTAATTATAAAAATATA
1042606 TAAATATTAA-TATAAAAATA
1 TAAAT-TTAATTATAAAAATA
1042626 ATATTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATTTAATTATAAAAATATA
Found at i:1044173 original size:2 final size:2
Alignment explanation
Indices: 1044166--1044190 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1044156 TGTTACTGCC
1044166 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1044191 GTTAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1044990 original size:29 final size:30
Alignment explanation
Indices: 1044930--1044998 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
1044920 TCTTTAAGAT
**
1044930 AAAGGTTCTATAATTCATCAAAACTAGAAA
1 AAAGGTTCTATAATTCATCAAAAAGAGAAA
* *
1044960 AAA-GTTCTATTATTCATCAAAAAGAGCAA
1 AAAGGTTCTATAATTCATCAAAAAGAGAAA
1044989 AAAGGTTCTA
1 AAAGGTTCTA
1044999 AAGCGTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.28
Consensus pattern (30 bp):
AAAGGTTCTATAATTCATCAAAAAGAGAAA
Found at i:1045097 original size:2 final size:2
Alignment explanation
Indices: 1045092--1045124 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1045082 TATATATATA
1045092 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1045125 CCGGACAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1051440 original size:47 final size:47
Alignment explanation
Indices: 1051388--1051477 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
1051378 AGAATGTTTA
*
1051388 AAAACATTATACGATGCCTGCATGCAGCTATAATACTAAGTAGCATT
1 AAAACATTATAAGATGCCTGCATGCAGCTATAATACTAAGTAGCATT
1051435 AAAACATTATAAGATGCCTGCATGCAGCTATAATACTAAGTAG
1 AAAACATTATAAGATGCCTGCATGCAGCTATAATACTAAGTAG
1051478 GAAAAGGCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (47 bp):
AAAACATTATAAGATGCCTGCATGCAGCTATAATACTAAGTAGCATT
Found at i:1054903 original size:2 final size:2
Alignment explanation
Indices: 1054896--1054921 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1054886 TTTTTATTAC
1054896 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1054922 CTAAAACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1060293 original size:21 final size:20
Alignment explanation
Indices: 1060246--1060299 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1060236 ACATTGAGAC
* *
1060246 ATGTATCAATACATTCACTT
1 ATGTATCGATACATTCACTA
1060266 ATGTATCGATACATTCACTA
1 ATGTATCGATACATTCACTA
1060286 ATTGTATCGATACA
1 A-TGTATCGATACA
1060300 AATCGTAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTCACTA
Found at i:1063664 original size:20 final size:20
Alignment explanation
Indices: 1063640--1063714 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
1063630 AAAAAGACGG
*
1063640 AATGTATCGATACATT-AAA
1 AATGTATCAATACATTCAAA
* *
1063659 GAATGTATCGATACATTCATA
1 -AATGTATCAATACATTCAAA
* *
1063680 CATGTATCAATACATTGAAA
1 AATGTATCAATACATTCAAA
*
1063700 AATATATCAATACAT
1 AATGTATCAATACAT
1063715 CTGAGTAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 45 0.96
21 2 0.04
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.32
Consensus pattern (20 bp):
AATGTATCAATACATTCAAA
Found at i:1069030 original size:5 final size:5
Alignment explanation
Indices: 1069022--1069051 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
1069012 GTTTATTTGG
*
1069022 GTTGA GTTGA GTTGA GTTGA GTTGG GTTGA
1 GTTGA GTTGA GTTGA GTTGA GTTGA GTTGA
1069052 AGAAATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (5 bp):
GTTGA
Found at i:1069771 original size:19 final size:19
Alignment explanation
Indices: 1069734--1069771 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1069724 ATGATCCTAT
*
1069734 AAAAAAATCTTAAATTAAA
1 AAAAAAATCTAAAATTAAA
1069753 AAAAAAAT-TAAAATCTAAA
1 AAAAAAATCTAAAAT-TAAA
1069772 TTTGAACAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAAAATCTAAAATTAAA
Found at i:1070023 original size:2 final size:2
Alignment explanation
Indices: 1070016--1070076 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
1070006 TGTTAATGAG
1070016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1070058 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
1070077 CACACTATAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1076514 original size:37 final size:38
Alignment explanation
Indices: 1076471--1076542 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
1076461 TTTTAAAATT
*
1076471 TTTTAAT-TATTTTAATTTATT-TTTAAGATAAATAATA
1 TTTTAATAAATTTTAA-TTATTATTTAAGATAAATAATA
*
1076508 TTTTAATAAATTTTAATTATTATTTAATATAAATA
1 TTTTAATAAATTTTAATTATTATTTAAGATAAATA
1076543 TTTTATAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
37 12 0.39
38 19 0.61
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (38 bp):
TTTTAATAAATTTTAATTATTATTTAAGATAAATAATA
Found at i:1076573 original size:34 final size:34
Alignment explanation
Indices: 1076524--1076631 Score: 121
Period size: 34 Copynumber: 3.1 Consensus size: 34
1076514 TAAATTTTAA
1076524 TTATTATTTAATATAAATAT-TTTATAAGATATATT
1 TTATTATTTAATATAAATATATTT-T-AGATATATT
**
1076559 TTATT-TTTAATATAAATATAATTTTATTTATATT
1 TTATTATTTAATATAAATAT-ATTTTAGATATATT
* *
1076593 TTATTATGTAATATAAATATAATTTTGATATATATT
1 TTATTATTTAATATAAATAT-ATTTT-AGATATATT
1076629 TTA
1 TTA
1076632 ATATAATTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
34 26 0.40
35 25 0.38
36 14 0.22
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (34 bp):
TTATTATTTAATATAAATATATTTTAGATATATT
Found at i:1076592 original size:29 final size:29
Alignment explanation
Indices: 1076555--1076637 Score: 80
Period size: 35 Copynumber: 2.7 Consensus size: 29
1076545 TTATAAGATA
1076555 TATTT-TATTTTTAATATAAATATAATTT
1 TATTTATATTTTTAATATAAATATAATTT
1076583 TATTTATATTTTATTATGTAATATAAATATAATTT
1 TATTTATA---T-TT-T-TAATATAAATATAATTT
*
1076618 TGATATATA-TTTTAATATAA
1 T-ATTTATATTTTTAATATAA
1076638 TTTCATTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 15
0.74 0.02 0.24
Matches are distributed among these distances:
28 5 0.11
29 10 0.22
30 1 0.02
31 2 0.04
32 1 0.02
33 2 0.04
34 1 0.02
35 18 0.39
36 6 0.13
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (29 bp):
TATTTATATTTTTAATATAAATATAATTT
Found at i:1078925 original size:3 final size:3
Alignment explanation
Indices: 1078917--1078950 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1078907 ACATACAAAC
1078917 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1078951 ATTATTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1081474 original size:27 final size:26
Alignment explanation
Indices: 1081373--1081474 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 26
1081363 GATGTTATAA
* * * *
1081373 TTATTATTTTATAATTTTAATATTTTT
1 TTATTA-TTAATAATTATAATAATATT
1081400 TTATTATTAAT-ATTATAATTAATATT
1 TTATTATTAATAATTATAA-TAATATT
1081426 TTATTA-TAATTAATTATAATAATA-T
1 TTATTATTAA-TAATTATAATAATATT
1081451 TTATTAAATTAATAATTATAATAA
1 TTATT--ATTAATAATTATAATAA
1081475 AAACCATAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
25 15 0.23
26 21 0.32
27 26 0.40
28 3 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TTATTATTAATAATTATAATAATATT
Found at i:1081682 original size:4 final size:4
Alignment explanation
Indices: 1081673--1081710 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
1081663 GCTTCCTTAG
* *
1081673 CTTT CTTT CTTT CTTT CTTT CTTT CTTT ATTT CGTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
1081711 ATATATAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.03, C:0.24, G:0.03, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:1084169 original size:19 final size:17
Alignment explanation
Indices: 1084145--1084179 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
1084135 ATATTTATTT
1084145 ATAAAATTTAAAATTTTAA
1 ATAAAA-TT-AAATTTTAA
1084164 ATAAAATTAAATTTTA
1 ATAAAATTAAATTTTA
1084180 TCAATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATAAAATTAAATTTTAA
Found at i:1088911 original size:47 final size:47
Alignment explanation
Indices: 1088853--1088944 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
1088843 TTGACATTCT
*
1088853 GGGCTCCAATTCCACACTTTCTCCTTTTTCAACAAATTTGTCAATAG
1 GGGCTCCAATTCCACACTTTCTCCTTTTTCAACAAATCTGTCAATAG
1088900 GGGCTCCAATTCCACACTTTCTCCTTTTTCAACAAATCTGTCAAT
1 GGGCTCCAATTCCACACTTTCTCCTTTTTCAACAAATCTGTCAAT
1088945 GGTGTGGTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.36
Consensus pattern (47 bp):
GGGCTCCAATTCCACACTTTCTCCTTTTTCAACAAATCTGTCAATAG
Found at i:1099115 original size:2 final size:2
Alignment explanation
Indices: 1099108--1099149 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1099098 ATTGCTGAAA
1099108 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1099150 CAGCTAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1105291 original size:16 final size:16
Alignment explanation
Indices: 1105270--1105301 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1105260 ATTAGCACCT
1105270 TGTCTTGCAAGTGGAG
1 TGTCTTGCAAGTGGAG
1105286 TGTCTTGCAAGTGGAG
1 TGTCTTGCAAGTGGAG
1105302 GGAGGGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.38, T:0.31
Consensus pattern (16 bp):
TGTCTTGCAAGTGGAG
Found at i:1117493 original size:1 final size:1
Alignment explanation
Indices: 1117487--1117537 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
1117477 TGGCAATTGG
* * * **
1117487 AAAAAAAAAACAAAACAAAAAAAAAAGAAAAAAACCAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1117538 GTGAAGATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:1117511 original size:19 final size:19
Alignment explanation
Indices: 1117487--1117537 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
1117477 TGGCAATTGG
*
1117487 AAAAAAAAAACAAAA-CAA
1 AAAAAAAAAAAAAAACCAA
1117505 AAAAAAAAGAAAAAAACCAA
1 AAAAAAAA-AAAAAAACCAA
1117525 AAAAAAAAAAAAA
1 AAAAAAAAAAAAA
1117538 GTGAAGATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 8 0.27
19 11 0.37
20 11 0.37
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAAAACCAA
Found at i:1117530 original size:24 final size:25
Alignment explanation
Indices: 1117489--1117538 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
1117479 GCAATTGGAA
1117489 AAAAAAAACAAAACAAAAAAAAAAG
1 AAAAAAAACAAAACAAAAAAAAAAG
* *
1117514 AAAAAAACCAAAAAAAAAAAAAAAG
1 AAAAAAAACAAAACAAAAAAAAAAG
1117539 TGAAGATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.88, C:0.08, G:0.04, T:0.00
Consensus pattern (25 bp):
AAAAAAAACAAAACAAAAAAAAAAG
Found at i:1120447 original size:371 final size:371
Alignment explanation
Indices: 1119764--1120875 Score: 2098
Period size: 371 Copynumber: 3.0 Consensus size: 371
1119754 TCATCAGTCA
* *
1119764 CTTTTGTCCAGAGGAAAATATGATAGCATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
1 CTTTTGTCCGGAGGAAAGTATGATAGCATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
1119829 CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
66 CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
1119894 AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
131 AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
*
1119959 AGATTACAGTTGCGTACCACTTATAGGGCAATGGGAAAGCACTAACTACGCTCGTATGTTGGTTC
196 AGATTACAGTTGCGTACCACTTATAGGGCTATGGGAAAGCACTAACTACGCTCGTATGTTGGTTC
1120024 TCTGACAATTCTTTTACCGATAATTCATCTGTTTTGTTCGAGATTTAGAGTTATGGGATTTTGAG
261 TCTGACAATTCTTTTACCGATAATTCATCTGTTTTGTTCGAGATTTAGAGTTATGGGATTTTGAG
1120089 TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGTG
326 TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGTG
1120135 CTTTTGTCCGGAGGAAAGTATGATAGCATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
1 CTTTTGTCCGGAGGAAAGTATGATAGCATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
1120200 CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
66 CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
1120265 AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
131 AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
1120330 AGATTACAGTTGCGTACCACTTATAGGGCTATGGGAAAGCACTAACTACGCTCGTATGTTGGTTC
196 AGATTACAGTTGCGTACCACTTATAGGGCTATGGGAAAGCACTAACTACGCTCGTATGTTGGTTC
1120395 TCTGACAATTCTTTTACCGATAATTCATCTGTTTTGTTCGAGATTTAGAGTTATGGGATTTTGAG
261 TCTGACAATTCTTTTACCGATAATTCATCTGTTTTGTTCGAGATTTAGAGTTATGGGATTTTGAG
1120460 TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGTG
326 TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGTG
*
1120506 CTTTTGTCCGGAGGAAAGTATGATAGTATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
1 CTTTTGTCCGGAGGAAAGTATGATAGCATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
1120571 CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
66 CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
1120636 AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
131 AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
* * * * * *
1120701 AGATTATAGTTGCGTATCACTTATAGGGCTATGGGGAAGCACTAGCTATGCTCCTATGTTGGTTC
196 AGATTACAGTTGCGTACCACTTATAGGGCTATGGGAAAGCACTAACTACGCTCGTATGTTGGTTC
* * * *
1120766 TCCGACAATTCTTTTACTGATAATTCATCTATTTTGTTCGAGATTTAGAGTTATGAGATTTTGAG
261 TCTGACAATTCTTTTACCGATAATTCATCTGTTTTGTTCGAGATTTAGAGTTATGGGATTTTGAG
1120831 TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGT
326 TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGT
1120876 TCTTGGACAC
Statistics
Matches: 727, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
371 727 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (371 bp):
CTTTTGTCCGGAGGAAAGTATGATAGCATACAATTTTCTACCTAACTTCAGCCCCATCTTTAAAG
CCCTTGAAAAGAAATGGCCTCAAGACAAGTCTGAAGAGCAATGGATTTGGAGATTGTAGAACCTC
AAGAGAAAAGAAGTAACATGGAAGACTTGTTGGTTTTTTCCCCAGATTATCATATATCGATGTGG
AGATTACAGTTGCGTACCACTTATAGGGCTATGGGAAAGCACTAACTACGCTCGTATGTTGGTTC
TCTGACAATTCTTTTACCGATAATTCATCTGTTTTGTTCGAGATTTAGAGTTATGGGATTTTGAG
TATGGAAAGCCAGATTACAAGTCGAGGGTCCAGTTAGCTTTTTGTG
Found at i:1134997 original size:10 final size:10
Alignment explanation
Indices: 1134982--1135015 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
1134972 ATTTTTGACA
1134982 AAAAAAAAAG
1 AAAAAAAAAG
1134992 AAAAAAAACAAG
1 -AAAAAAA-AAG
1135004 AAAAAAAAAG
1 AAAAAAAAAG
1135014 AA
1 AA
1135016 CTAGCTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.23
11 14 0.64
12 3 0.14
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:1134998 original size:12 final size:12
Alignment explanation
Indices: 1134981--1135012 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1134971 TATTTTTGAC
1134981 AAAAAAAAAAGA
1 AAAAAAAAAAGA
*
1134993 AAAAAAACAAGA
1 AAAAAAAAAAGA
1135005 AAAAAAAA
1 AAAAAAAA
1135013 GAACTAGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:1136117 original size:59 final size:60
Alignment explanation
Indices: 1136003--1136117 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 60
1135993 GGATGCTTTT
* * * * *
1136003 TCTTTTCTAAATCCCATACAAGTTGGTGGCACCCCTTTTTAGCCCTCAAAGAGCAGAACG
1 TCTTTTCTAAAGCCCACACAAGCTAGTGGCACCCCTGTTTAGCCCTCAAAGAGCAGAACG
* *
1136063 TCTTTTCTTAAAGCCCACACAAGCTAGTGGCA-CCC-GTTTAGTCCTTAAAGAGCAG
1 TCTTTTC-TAAAGCCCACACAAGCTAGTGGCACCCCTGTTTAGCCCTCAAAGAGCAG
1136118 GACACCTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
59 17 0.36
60 10 0.21
61 20 0.43
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (60 bp):
TCTTTTCTAAAGCCCACACAAGCTAGTGGCACCCCTGTTTAGCCCTCAAAGAGCAGAACG
Found at i:1136178 original size:138 final size:142
Alignment explanation
Indices: 1136020--1136273 Score: 331
Period size: 138 Copynumber: 1.8 Consensus size: 142
1136010 TAAATCCCAT
*
1136020 ACAAGTTGGTGGCACCCCTTTTTAGCCCTCAAAGAGCA-G-AACGTCTTTTC-T-T-AAAGCCCA
1 ACAAGTTGGTGGCACCCCTTTTTAGCCCTCAAAGAGCATGCAAC-TCTTTTCTTCTAAAAACCCA
*
1136080 CACAAGCTAGTGGCA-CCCGTTTAGTCCTTAAAGAGCAGGACACCTCTTCTCTGCTTTTTTTTTT
65 CACAAGCTAGTGGCACCCCGTTTAGTCCTCAAAGAGCAGGACACCT-TTCTCTGCTTTTTTTTTT
1136144 ATAAAAAAGTTCAC
129 ATAAAAAAGTTCAC
** * * * *
1136158 ACAAGTTGGTGGCATTCCTTTTTAGTCCTTAAAGAGCATGCCACTTTTTTCTTCTAAAAACCCAC
1 ACAAGTTGGTGGCACCCCTTTTTAGCCCTCAAAGAGCATGCAACTCTTTTCTTCTAAAAACCCAC
* * * * *
1136223 ACAAGTTAGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACGCCTTTCTCT
66 ACAAGCTAGTGGCACCCCGTTTAGTCCTCAAAGAGCAGGACACCTTTCTCT
1136274 TTTAAAAGCC
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
138 34 0.35
139 7 0.07
140 3 0.03
141 1 0.01
142 27 0.28
143 25 0.26
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (142 bp):
ACAAGTTGGTGGCACCCCTTTTTAGCCCTCAAAGAGCATGCAACTCTTTTCTTCTAAAAACCCAC
ACAAGCTAGTGGCACCCCGTTTAGTCCTCAAAGAGCAGGACACCTTTCTCTGCTTTTTTTTTTAT
AAAAAAGTTCAC
Found at i:1136289 original size:64 final size:64
Alignment explanation
Indices: 1136155--1136513 Score: 272
Period size: 64 Copynumber: 5.4 Consensus size: 64
1136145 TAAAAAAGTT
** * * * * * * * *
1136155 CACACAAGTTGGTGGCATTCCTTTTTAGTCCTTAAAGAGCATGCCACTTTTTTCTTCTAAAAACC
1 CACACAAGTTGGTGGCACCCCTTTTT-GTCCTCAAAGAGTAGGACACCTTTCTCTTTTAAAAGCC
* *
1136220 CACACAAGTTAGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACGCCTTTCTCTTTTAAAAGCC
1 CACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACACCTTTCTCTTTTAAAAGCC
* * * * *
1136284 TACACAAGTTGGTGGCATCCCTTTTAGTCCTCAAAAATTAGGACACCTCTTCCCATTTTTTTCTT
1 CACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACACCT-TT--C-------TCTT
1136349 TTAAAAGCC
56 TTAAAAGCC
* *
1136358 CACATAAGTTGGTGGCACCCCTTTTTAGT-CTCCAAAGAGTAGGACGCCTTAT-TCTTTTAAAAG
1 CACACAAGTTGGTGGCACCCCTTTTT-GTCCT-CAAAGAGTAGGACACCTT-TCTCTTTTAAAAG
1136421 CC
63 CC
* * * * * * *
1136423 ACACACAAGTTGGTGGCAACCCTTTTAGTCTTCAAAGAGCAAGACATCTTTTCTTTCTTTTCAAA
1 -CACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACA-CCTTTC--TCTTTTAAAA
*
1136488 GCT
62 GCC
** *
1136491 CACACAAACTGGTGGCAACCCTT
1 CACACAAGTTGGTGGCACCCCTT
1136514 CTCTAAAGCC
Statistics
Matches: 237, Mismatches: 38, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
64 70 0.30
65 52 0.22
66 27 0.11
67 22 0.09
68 11 0.05
74 38 0.16
75 17 0.07
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (64 bp):
CACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACACCTTTCTCTTTTAAAAGCC
Found at i:1136345 original size:203 final size:201
Alignment explanation
Indices: 1135998--1136463 Score: 467
Period size: 203 Copynumber: 2.3 Consensus size: 201
1135988 GAGCGGGATG
* * * *
1135998 CTTTTTCTTTTCT-AAATCCCATACAAGTTGGTGGCACCCCTTTTTAGCCCTCAAAGAGCAGAAC
1 CTTTTT-TCTTCTAAAAACCCACACAAGTTGGTGGCACCCCTTTTT-GTCCTCAAAGAGCAGAAC
* * *
1136062 GTCTTTTCTTAAAGCCCACACAAGCTAGTGGCACCCGTTTAGTCCTTAAAGAGCAGGACACCTCT
64 GCCTTTTCTTAAAGCCCACACAAGCTAGTGGCACCCGTTTAGTCCTCAAAAAGCAGGACACCTCT
* ** ** *
1136127 TCTCTGCT-TTTTTTTTTATAAAAAAGTTCACACAAGTTGGTGGCATTCCTTTTTAGTC-CTTAA
129 TCTC-GCTATTTTTTTCT-TAAAAAAGCCCACACAAGTTGGTGGCACCCCTTTTTAGTCTC-CAA
* *
1136190 AGAGCATGCCA
191 AGAGCAGGACA
* * *
1136201 CTTTTTTCTTCTAAAAACCCACACAAGTTAGTGGCACCCCTTTTTGTCCTCAAAGAGTAGGACGC
1 CTTTTTTCTTCTAAAAACCCACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGCAGAACGC
* * * * **
1136266 CTTTCTCTTTTAAAAGCCTACACAAGTTGGTGGCATCCCTTTTAGTCCTCAAAAATTAGGACACC
66 CTTT-TC--TT-AAAGCCCACACAAGCTAGTGGCA-CCCGTTTAGTCCTCAAAAAGCAGGACACC
** *
1136331 TCTTC-C-C-ATTTTTTTCTTTTAAAAGCCCACATAAGTTGGTGGCACCCCTTTTTAGTCTCCAA
126 TCTTCTCGCTATTTTTTTCTTAAAAAAGCCCACACAAGTTGGTGGCACCCCTTTTTAGTCTCCAA
* *
1136393 AGAGTAGGACG
191 AGAGCAGGACA
* * * * * * *
1136404 CCTTATTCTTTTAAAAGCCACACACAAGTTGGTGGCAACCCTTTTAGTCTTCAAAGAGCA
1 CTTTTTTCTTCTAAAAACC-CACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGCA
1136464 AGACATCTTT
Statistics
Matches: 216, Mismatches: 38, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
202 25 0.12
203 94 0.44
204 45 0.21
205 2 0.01
206 21 0.10
207 29 0.13
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (201 bp):
CTTTTTTCTTCTAAAAACCCACACAAGTTGGTGGCACCCCTTTTTGTCCTCAAAGAGCAGAACGC
CTTTTCTTAAAGCCCACACAAGCTAGTGGCACCCGTTTAGTCCTCAAAAAGCAGGACACCTCTTC
TCGCTATTTTTTTCTTAAAAAAGCCCACACAAGTTGGTGGCACCCCTTTTTAGTCTCCAAAGAGC
AGGACA
Found at i:1136373 original size:138 final size:140
Alignment explanation
Indices: 1136202--1136458 Score: 405
Period size: 138 Copynumber: 1.9 Consensus size: 140
1136192 AGCATGCCAC
1136202 TTTTTTCTTCTAAAAACCCACACAAGTTAGTGGCACCCCTTTTT-GTC-CTCAAAGAGTAGGACG
1 TTTTTTCTTCTAAAAACCCACACAAGTTAGTGGCACCCCTTTTTAGTCTC-CAAAGAGTAGGACG
* *
1136265 CCTT-TCTCTTTTAAAAGCC-TACACAAGTTGGTGGCATCCCTTTTAGTCCTCAAAAATTAGGAC
65 CCTTAT-TCTTTTAAAAGCCACACACAAGTTGGTGGCAACCCTTTTAGTCCTCAAAAATTAGGAC
1136328 ACCTCTTCCCAT
129 ACCTCTTCCCAT
* * * *
1136340 TTTTTTCTTTTAAAAGCCCACATAAGTTGGTGGCACCCCTTTTTAGTCTCCAAAGAGTAGGACGC
1 TTTTTTCTTCTAAAAACCCACACAAGTTAGTGGCACCCCTTTTTAGTCTCCAAAGAGTAGGACGC
*
1136405 CTTATTCTTTTAAAAGCCACACACAAGTTGGTGGCAACCCTTTTAGTCTTCAAA
66 CTTATTCTTTTAAAAGCCACACACAAGTTGGTGGCAACCCTTTTAGTCCTCAAA
1136459 GAGCAAGACA
Statistics
Matches: 108, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
138 40 0.37
139 34 0.31
140 34 0.31
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (140 bp):
TTTTTTCTTCTAAAAACCCACACAAGTTAGTGGCACCCCTTTTTAGTCTCCAAAGAGTAGGACGC
CTTATTCTTTTAAAAGCCACACACAAGTTGGTGGCAACCCTTTTAGTCCTCAAAAATTAGGACAC
CTCTTCCCAT
Found at i:1136528 original size:33 final size:34
Alignment explanation
Indices: 1136485--1136549 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
1136475 CTTTCTTTTC
*
1136485 AAAGCTCACACAAACTGGTGGCAAC-CCTTCTCT
1 AAAGCCCACACAAACTGGTGGCAACTCCTTCTCT
** *
1136518 AAAGCCCACACAAGTTGGTGGCATCTCCTTCT
1 AAAGCCCACACAAACTGGTGGCAACTCCTTCT
1136550 AAGCCTAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (34 bp):
AAAGCCCACACAAACTGGTGGCAACTCCTTCTCT
Found at i:1136779 original size:113 final size:113
Alignment explanation
Indices: 1136583--1136790 Score: 269
Period size: 113 Copynumber: 1.8 Consensus size: 113
1136573 ATCAGTATGC
* *
1136583 TGGCGCCTTTGTCATCTTTAAGTTCAATATCGTTGGCTTTGAATCAACATATCGGCACCTTTATC
1 TGGCACCTTTGTCATCTTTAAGGTCAATATCGTTGGCTTTGAATCAACATATCGGCACCTTTATC
*
1136648 ATTCTTCTCATCTATAAGTATAATGTCGCTGGTGTTGGATCAGCACAT
66 ATTCTTCTCATCTATAAGTATAATGCCGCTGGTGTTGGATCAGCACAT
* * * **
1136696 TGGCACCTTTGTTATCTTT-AGGTCGAATATCGTTGG-TCTTGAATCAGCATATTGGCATTTTTA
1 TGGCACCTTTGTCATCTTTAAGGTC-AATATCGTTGGCT-TTGAATCAACATATCGGCACCTTTA
* * *
1136759 TCATTCTT-TGCATTTTTAAGTCTAATGCCGCT
64 TCATTCTTCT-CATCTATAAGTATAATGCCGCT
1136791 AACCTTGAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
112 6 0.07
113 75 0.93
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41
Consensus pattern (113 bp):
TGGCACCTTTGTCATCTTTAAGGTCAATATCGTTGGCTTTGAATCAACATATCGGCACCTTTATC
ATTCTTCTCATCTATAAGTATAATGCCGCTGGTGTTGGATCAGCACAT
Found at i:1136808 original size:113 final size:113
Alignment explanation
Indices: 1136583--1136824 Score: 267
Period size: 113 Copynumber: 2.1 Consensus size: 113
1136573 ATCAGTATGC
* * *
1136583 TGGCGCCTTTGTCATCTTTAAGTTCAATATCGTTGGCTTTGAATCAACATATCGGCACCTTTATC
1 TGGCACCTTTGTTATCTTTAAGGTCAATATCGTTGGCTTTGAATCAACATATCGGCACCTTTATC
* **** * *
1136648 ATTCTTCTCATCTATAAGTATAATGTCGCTGGTGTTGGATCAGCACAT
66 ATTCTTCTCATCTATAAGTATAATGCCGCTAACCTTGAATCAACACAT
* * **
1136696 TGGCACCTTTGTTATCTTT-AGGTCGAATATCGTTGG-TCTTGAATCAGCATATTGGCATTTTTA
1 TGGCACCTTTGTTATCTTTAAGGTC-AATATCGTTGGCT-TTGAATCAACATATCGGCACCTTTA
* * *
1136759 TCATTCTT-TGCATTTTTAAGTCTAATGCCGCTAACCTTGAATCAACACAT
64 TCATTCTTCT-CATCTATAAGTATAATGCCGCTAACCTTGAATCAACACAT
1136809 TGGCACTCTTT-TTATC
1 TGGCAC-CTTTGTTATC
1136825 CTTATCATAT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
112 6 0.06
113 98 0.91
114 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.40
Consensus pattern (113 bp):
TGGCACCTTTGTTATCTTTAAGGTCAATATCGTTGGCTTTGAATCAACATATCGGCACCTTTATC
ATTCTTCTCATCTATAAGTATAATGCCGCTAACCTTGAATCAACACAT
Found at i:1137529 original size:20 final size:21
Alignment explanation
Indices: 1137485--1137538 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1137475 TTTTATAATT
* *
1137485 TGTATCGATATAAACAGTAAA
1 TGTATCGATACATACAGTAAA
*
1137506 TGTATCGATACATA-AGTGAA
1 TGTATCGATACATACAGTAAA
*
1137526 TGTATCAATACAT
1 TGTATCGATACAT
1137539 TATGGGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (21 bp):
TGTATCGATACATACAGTAAA
Found at i:1141772 original size:15 final size:16
Alignment explanation
Indices: 1141752--1141790 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
1141742 GATCCTGTTT
1141752 ATCCACCACC-CATTC
1 ATCCACCACCTCATTC
1141767 ATCCACC-CCTCATTC
1 ATCCACCACCTCATTC
1141782 ATCCACCAC
1 ATCCACCAC
1141791 TTGTTTACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.09
15 19 0.86
16 1 0.05
ACGTcount: A:0.26, C:0.54, G:0.00, T:0.21
Consensus pattern (16 bp):
ATCCACCACCTCATTC
Found at i:1142435 original size:19 final size:18
Alignment explanation
Indices: 1142372--1142438 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
1142362 TTATTAACAA
1142372 TAAT-AGCAT-TATAAAT
1 TAATAAGCATATATAAAT
*
1142388 TAATAAG-A-ATACAAATT
1 TAATAAGCATATATAAA-T
**
1142405 TAATAAAAATATATGAAAT
1 TAATAAGCATATAT-AAAT
1142424 TAATAAGCATATATA
1 TAATAAGCATATATA
1142439 TTTTTAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
16 10 0.25
17 9 0.22
18 2 0.05
19 16 0.40
20 3 0.08
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (18 bp):
TAATAAGCATATATAAAT
Found at i:1142735 original size:16 final size:16
Alignment explanation
Indices: 1142714--1142747 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1142704 AATTACTTAA
*
1142714 TATTTATTAGTATAAT
1 TATTTATTAATATAAT
1142730 TATTTATTAATATAAT
1 TATTTATTAATATAAT
1142746 TA
1 TA
1142748 ATTAAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATTTATTAATATAAT
Found at i:1146596 original size:7 final size:7
Alignment explanation
Indices: 1146584--1146638 Score: 110
Period size: 7 Copynumber: 7.9 Consensus size: 7
1146574 TAATATTATA
1146584 TGGCACT
1 TGGCACT
1146591 TGGCACT
1 TGGCACT
1146598 TGGCACT
1 TGGCACT
1146605 TGGCACT
1 TGGCACT
1146612 TGGCACT
1 TGGCACT
1146619 TGGCACT
1 TGGCACT
1146626 TGGCACT
1 TGGCACT
1146633 TGGCAC
1 TGGCAC
1146639 GTGCAGGTGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.27
Consensus pattern (7 bp):
TGGCACT
Found at i:1154642 original size:15 final size:15
Alignment explanation
Indices: 1154606--1164443 Score: 4609
Period size: 15 Copynumber: 639.9 Consensus size: 15
1154596 GGAGAGACAG
1154606 AAACCCG-AA-CCG-
1 AAACCCGAAACCCGA
*
1154618 AAACCGGAAACCCGA
1 AAACCCGAAACCCGA
1154633 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
1154646 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1154660 -AACTCCGAAACTCCG-
1 AAAC-CCGAAAC-CCGA
*
1154675 ACACCCTGAAACTCCG-
1 AAACCC-GAAAC-CCGA
*
1154691 AACCCCGAAACCTCGTA
1 AAACCCGAAACC-CG-A
* * *
1154708 AACCCCGACACCCGT
1 AAACCCGAAACCCGA
*
1154723 AAA-CCGAAAACCG-
1 AAACCCGAAACCCGA
* **
1154736 CAACCC-AGCCCCCGA
1 AAACCCGA-AACCCGA
*
1154751 GAACCCGCAAACCCG-
1 AAACCCG-AAACCCGA
1154766 AAACTCCGAAACCCG-
1 AAAC-CCGAAACCCGA
*
1154781 AAACCCTGGAAACACG-
1 AAACCC--GAAACCCGA
*
1154797 TAACCCGAAA--CG-
1 AAACCCGAAACCCGA
1154809 AAACCCGGAAAAACCCTGA
1 AAACCC-G--AAACCC-GA
1154828 AAACCCCGAAACCCCG-
1 AAA-CCCGAAA-CCCGA
1154844 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1154858 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1154872 -AACCCGAAACCCGGAGA
1 AAACCCGAAACCC---GA
*
1154889 AATACCCGAAACCCGGG
1 AA-ACCCGAAACCC-GA
*
1154906 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
* *
1154921 AACCCCGAAACCCGG
1 AAACCCGAAACCCGA
1154936 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1154950 AAA-CCGACAACCCGCC
1 AAACCCGA-AACCCG-A
*
1154966 ACACCCGAAAAACCCCGA
1 AAACCCG--AAA-CCCGA
**
1154984 ATCCGCCGAAACCTCGA
1 AAAC-CCGAAACC-CGA
1155001 AAACCCGAAACCCTGA
1 AAACCCGAAACCC-GA
* *
1155017 AATCTCCAAAATTCCCGGA
1 AAAC-CCGAAA--CCC-GA
1155036 AAACCCGACAACCTCG-
1 AAACCCGA-AACC-CGA
*
1155052 AAACCCGAATAAACACGA
1 AAACCCG---AAACCCGA
*
1155070 AACCTCCGAAACCCG-
1 AAAC-CCGAAACCCGA
**
1155085 AAACCCGAATACCCTT
1 AAACCCGAA-ACCCGA
* * *
1155101 GAACCCTTAAAACCGA
1 AAACCC-GAAACCCGA
1155117 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1155131 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
*
1155144 AAACCCGGAAACCCGCGG
1 AAACCC-GAAA-CC-CGA
1155162 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
*
1155175 -AACCCG-CACCCG-
1 AAACCCGAAACCCGA
1155187 AAACCCGAAACCTCG-
1 AAACCCGAAACC-CGA
*
1155202 ACACCCGAAACCCGA
1 AAACCCGAAACCCGA
1155217 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1155231 AAACACGAAACCCGGGCA
1 AAACCCGAAACCC--G-A
* *
1155249 TAACCCGAAA--AG-
1 AAACCCGAAACCCGA
1155261 AAACCCGGAAACCTCGA
1 AAACCC-GAAACC-CGA
*
1155278 AACCCCGAAACCCGGA
1 AAACCCGAAACCC-GA
1155294 TGAAACCCGAAACCCG-
1 --AAACCCGAAACCCGA
* *
1155310 CAACCCGAACACACG-
1 AAACCCGAA-ACCCGA
*
1155325 AAACCCGCAACCCGA
1 AAACCCGAAACCCGA
* * *
1155340 AACCCTCAACAACACGA
1 AAACC-CGA-AACCCGA
1155357 AAACCCGGAGGAAACCCGA
1 AAACCC----GAAACCCGA
* *
1155376 AAAACCGCAACCCCGGA
1 AAACCCG-AAACCC-GA
*
1155393 TAACCCGAAACTCCG-
1 AAACCCGAAAC-CCGA
1155408 AAACCCGAAACCTCGA
1 AAACCCGAAACC-CGA
*
1155424 ATATCCCGAAACCCG-
1 A-AACCCGAAACCCGA
1155439 AAACTCCGAATACCCCGA
1 AAAC-CCGAA-A-CCCGA
1155457 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1155472 AAACCTCAAAACCCGC
1 AAACC-CGAAACCCGA
* *
1155488 TAACCCG-AACCCGG
1 AAACCCGAAACCCGA
*
1155502 AAA-CCGAAAACCGA
1 AAACCCGAAACCCGA
*
1155516 ACACCTCGAAACCCGAA
1 AAACC-CGAAACCCG-A
1155533 AAACTCCGAAACCCG-
1 AAAC-CCGAAACCCGA
1155548 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1155562 -AACCCGAAAACCCGT
1 AAACCCG-AAACCCGA
*
1155577 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
*
1155592 AAACCCGGAAACCCGC
1 AAACCC-GAAACCCGA
*
1155608 AACCCCGGAAACCCG-
1 AAACCC-GAAACCCGA
1155623 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
1155636 AAACCCTGAAACCCG-
1 AAACCC-GAAACCCGA
1155651 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1155665 -AA-CCGGAACCCGA
1 AAACCCGAAACCCGA
1155678 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
**
1155692 AAACCCG--A-GGGAA
1 AAACCCGAAACCCG-A
1155705 AAACCCGGCAAACCCGA
1 AAACCC-G-AAACCCGA
1155722 AAACCCGTAAACCCGA
1 AAACCCG-AAACCCGA
1155738 AAACCCTGAAAATCCCGA
1 AAACCC-G-AAA-CCCGA
1155756 AAACCCGGGGAAACCCG-
1 AAACCC---GAAACCCGA
1155773 -AACCCGAAACCCG-
1 AAACCCGAAACCCGA
1155786 AAACCCGAAA-CCGATA
1 AAACCCGAAACCCG--A
*
1155802 AAATCCTGTAAACCCGTA
1 AAA-CCCG-AAACCCG-A
*
1155820 ACACCCGAAGAAACCCG-
1 AAACCC---GAAACCCGA
*
1155837 AAACCCG-ACCCCGA
1 AAACCCGAAACCCGA
*
1155851 AATCCCG-AACTCCGA
1 AAACCCGAAAC-CCGA
1155866 GAAACCCGAAAAAACCCG-
1 -AAACCCG---AAACCCGA
*
1155884 AAACCCG-AACCCGTG
1 AAACCCGAAACCCG-A
*
1155899 AAACCCGAAACCCGGT
1 AAACCCGAAACCC-GA
1155915 AAACCCGAAA--CGA
1 AAACCCGAAACCCGA
1155928 AAA-CC----CCCGAA
1 AAACCCGAAACCCG-A
* *
1155939 AAGACCCGATACCGGTA
1 AA-ACCCGAAACCCG-A
*
1155956 TAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1155971 TAACCCGGTAA-CCGA
1 AAACCC-GAAACCCGA
*
1155986 ATACCCGAATA-CCGA
1 AAACCCGAA-ACCCGA
1156001 ATAACTCCGAAACCCG-
1 A-AAC-CCGAAACCCGA
1156017 AAACCCG-AACCCG-
1 AAACCCGAAACCCGA
*
1156030 AAA-CCGCAACCCG-
1 AAACCCGAAACCCGA
1156043 AAACCCG-AACCCGA
1 AAACCCGAAACCCGA
1156057 AAATCCCG-AACCCGA
1 AAA-CCCGAAACCCGA
* *
1156072 CATCCCGAAACCTCCG-
1 AAACCCGAAA-C-CCGA
1156088 AAACCCGAAAACCCGAA
1 AAACCCG-AAACCCG-A
1156105 GGTAAACCCGAAACCCGA
1 ---AAACCCGAAACCCGA
*
1156123 AAACCCGCAACCCGA
1 AAACCCGAAACCCGA
*
1156138 GATAACCCGAAACCCGT
1 -A-AACCCGAAACCCGA
* *
1156155 AAACCAGAATACCGCTA
1 AAACCCGAA-ACC-CGA
*
1156172 AAACCCGAAACCCTGG
1 AAACCCGAAACCC-GA
1156188 AAACCCGAAAGAAACCCGA
1 AAACCC----GAAACCCGA
*
1156207 ATAAACCGATAA-CCGA
1 A-AACCCGA-AACCCGA
* *
1156223 AAAACCGAAAAACCG-
1 AAACCCG-AAACCCGA
*
1156238 AAACTCG-AACCCGA
1 AAACCCGAAACCCGA
1156252 AAACCCGAAACTCCG-
1 AAACCCGAAAC-CCGA
1156267 AAACCTGCGAGAACCCGA
1 AAACC--CGA-AACCCGA
*
1156285 AAACCCGACA-CCGA
1 AAACCCGAAACCCGA
*
1156299 ACACCCGAAATATCCCGA
1 AAACCCG-AA-A-CCCGA
*
1156317 AATTGCCCGCAATACCCGA
1 AA--ACCCG-AA-ACCCGA
*
1156336 AACCTCCGAAAACCCGA
1 AAAC-CCG-AAACCCGA
* *
1156353 AATCCCGACACCCG-
1 AAACCCGAAACCCGA
1156367 AAACCCGAAACCCGGA
1 AAACCCGAAACCC-GA
1156383 AAACCCGAAAACCCG-
1 AAACCCG-AAACCCGA
1156398 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1156412 AAACCCGAAACTCCG-
1 AAACCCGAAAC-CCGA
1156427 AAACCCGAAAACCCGA
1 AAACCCG-AAACCCGA
1156443 AAACCCGAATACCCGA
1 AAACCCGAA-ACCCGA
*
1156459 GAACCCGAAATCCCGAA
1 AAACCCGAAA-CCCG-A
* *
1156476 AAACCGTCTTAATCCCG-
1 AAACC--C-GAAACCCGA
*
1156493 AAACCCGAGACCC-A
1 AAACCCGAAACCCGA
1156507 AAACCCG-AACCCGA
1 AAACCCGAAACCCGA
*
1156521 GCAACCCGAAATCCCG-
1 -AAACCCGAAA-CCCGA
*
1156537 AAACCCGATACCCCGA
1 AAACCCGA-AACCCGA
* * * ***
1156553 CAATCCTAAA--ATT
1 AAACCCGAAACCCGA
*
1156566 AATCCCGAAACCCGAA
1 AAACCCGAAACCCG-A
1156582 AAACCCGGGAAACCCGA
1 AAACCC--GAAACCCGA
1156599 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1156614 AATACCCGAACCCCGA
1 AA-ACCCGAAACCCGA
* *
1156630 AACCCCGAAACGCCGGG
1 AAACCCGAAAC-CC-GA
1156647 AAA-CCGTAAACCTCGGA
1 AAACCCG-AAACC-C-GA
*
1156664 ATGACCCTGAAA-CCG-
1 A-AACCC-GAAACCCGA
* * *
1156679 GACCCCGCAACCCG-
1 AAACCCGAAACCCGA
* *
1156693 TACCCCGAAAACCCG-
1 AAACCCG-AAACCCGA
*
1156708 AAACTCTCGAAATCC-A
1 AAAC-C-CGAAACCCGA
1156724 GAAACCC-AATACGTCCG-
1 -AAACCCGAA-AC--CCGA
1156741 AAACTCCGAAACCCGGA
1 AAAC-CCGAAACCC-GA
1156758 TAAACCCGAAACCCG-
1 -AAACCCGAAACCCGA
1156773 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1156788 CAAACCCGAAACCCGA
1 -AAACCCGAAACCCGA
1156804 AAACCTCGAAACTCCGA
1 AAACC-CGAAAC-CCGA
**
1156821 ATCCCCGTAAACCCGGA
1 AAACCCG-AAACCC-GA
1156838 AAACCCCGAATA-CCG-
1 AAA-CCCGAA-ACCCGA
*
1156853 AAACCTCGAATCTTCCGA
1 AAACC-CGAAAC--CCGA
* * **
1156871 TAATCCAGAAAATACGA
1 -AAACCCG-AAACCCGA
*
1156888 AATCCCG-AACCTCG-
1 AAACCCGAAACC-CGA
*
1156902 AAACCCGAAACTCCGTT
1 AAACCCGAAAC-CCG-A
1156919 AAACCCTGAAACCCGA
1 AAACCC-GAAACCCGA
*
1156935 TACACCTCG-AA-CCGA
1 -AAACC-CGAAACCCGA
1156950 AAA-CCGAAAACCCG-
1 AAACCCG-AAACCCGA
1156964 AAACTCCGAAACCCGA
1 AAAC-CCGAAACCCGA
1156980 AAACCCGAAATCCCGA
1 AAACCCGAAA-CCCGA
1156996 AAACCCGTAAA-CCG-
1 AAACCCG-AAACCCGA
1157010 AAACCCGGAAAACCCCGA
1 AAACCC-G-AAA-CCCGA
*
1157028 AAACCTCGAACGCCCGA
1 AAACC-CGAA-ACCCGA
*
1157045 AATATCCCGAAAAACCG-
1 AA-A-CCCG-AAACCCGA
* * *
1157062 -CACCCGATACCCGG
1 AAACCCGAAACCCGA
**
1157076 AAACCCG-AA--TTA
1 AAACCCGAAACCCGA
* *
1157088 GAACCCGAGACCCGA
1 AAACCCGAAACCCGA
1157103 CAAACCCGAAACCCCG-
1 -AAACCCGAAA-CCCGA
1157119 AAACCCGGAAACCCGCA
1 AAACCC-GAAACCCG-A
*
1157136 ATAAACCGAAACCCGGGA
1 A-AACCCGAAACCC--GA
* *
1157154 ATACCCGAAACCCGT
1 AAACCCGAAACCCGA
1157169 AAACCCGAAACCCTG-
1 AAACCCGAAACCC-GA
*
1157184 AAA-CCG-AACCGCTAA
1 AAACCCGAAACC-C-GA
1157199 TATAACCCGCTGAAACCCG-
1 -A-AA-CC-C-GAAACCCGA
1157218 AAACCCGTAAACCCGTA
1 AAACCCG-AAACCCG-A
1157235 AAACCCGAAA---GA
1 AAACCCGAAACCCGA
*
1157247 CAACCGTCGAAACCCGA
1 AAACC--CGAAACCCGA
*
1157264 TAACCCGAAACCCGGA
1 AAACCCGAAACCC-GA
*
1157280 ATACCCGAAAAACCTCG-
1 AAACCCG--AAACC-CGA
1157297 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
**
1157312 ATCCCCG-AACCCGA
1 AAACCCGAAACCCGA
* * *
1157326 AATCCCGCACCCCG-
1 AAACCCGAAACCCGA
1157340 -AACCCGAATACCCTGA
1 AAACCCGAA-ACCC-GA
*
1157356 ATACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1157370 AAACCCGCAACCCGA
1 AAACCCGAAACCCGA
1157385 CAAACCCGAAACTCCGA
1 -AAACCCGAAAC-CCGA
*
1157402 AACCCGCGAAACCCGA
1 AAACC-CGAAACCCGA
*
1157418 ATACCCGGGAAAACCCG-
1 AAACCC--G-AAACCCGA
1157435 AAACCCGGAAACTCCGCA
1 AAACCC-GAAAC-CCG-A
** *
1157453 GCACCCGCTAACCCG-
1 AAACCCG-AAACCCGA
*
1157468 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
*
1157483 AAACCCGAACCCCG-
1 AAACCCGAAACCCGA
*
1157497 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
1157512 AAACCCGTAAACCCG-
1 AAACCCG-AAACCCGA
1157527 AAACCCG-AACCCG-
1 AAACCCGAAACCCGA
1157540 AAACCCGAAACCGCG-
1 AAACCCGAAACC-CGA
*
1157555 AATCCCGAAA-CCGA
1 AAACCCGAAACCCGA
* *
1157569 ATACCTGAAACCCTG-
1 AAACCCGAAACCC-GA
*
1157584 TAA----AAACCTCGA
1 AAACCCGAAACC-CGA
*
1157596 AACACCCGAACCCCGA
1 AA-ACCCGAAACCCGA
* *
1157612 TAACACGAAACCCGA
1 AAACCCGAAACCCGA
*
1157627 AAACCCGCAACCCG-
1 AAACCCGAAACCCGA
1157641 AAACCCGAAACCCCG-
1 AAACCCGAAA-CCCGA
**
1157656 AAACCCTAGGAAACAGGA
1 AAACCC---GAAACCCGA
1157674 AAACCCTGAAACCCGAA
1 AAACCC-GAAACCCG-A
*
1157691 AAACGCGAATAAACCCTG-
1 AAACCCG---AAACCC-GA
*
1157709 AAACCCGATAACTCTGA
1 AAACCCGA-AAC-CCGA
*
1157726 AAATCCGAAACCCTGA
1 AAACCCGAAACCC-GA
1157742 AAA-CCGAAACCCG-
1 AAACCCGAAACCCGA
*
1157755 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
*
1157770 AAACCCGTAAACCTCGGG
1 AAACCCG-AAACC-C-GA
1157788 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1157802 --A--CGAAATCCCGA
1 AAACCCGAAA-CCCGA
*
1157814 AATTCCCGAAACTCCG-
1 AA-ACCCGAAAC-CCGA
1157830 AAACTCCTGAAAACCCGA
1 AAAC-CC-G-AAACCCGA
1157848 TATAATCCTCGAAACCCGGA
1 -A-AA-CC-CGAAACCC-GA
*
1157868 AAACCCGAAACCCGTG
1 AAACCCGAAACCCG-A
1157884 AAACCTCGAAACCCGCA
1 AAACC-CGAAACCCG-A
1157901 ACCGAACCCG-AACCCGA
1 A---AACCCGAAACCCGA
*
1157918 AAACCCGCAACCCG-
1 AAACCCGAAACCCGA
*
1157932 AAACCCGAAACCCGGG
1 AAACCCGAAACCC-GA
*
1157948 AAACCGCGATTACCCGGA
1 AAACC-CGA-AACCC-GA
1157966 AATACTCCAGAAACCCCG-
1 AA-AC-CC-GAAA-CCCGA
1157984 -AACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1157998 AAACCTCGGAACCCG-
1 AAACC-CGAAACCCGA
* *
1158013 AAACACGGAACCCCGA
1 AAAC-CCGAAACCCGA
*
1158029 AAACCCGAAACCGGAA
1 AAACCCGAAACCCG-A
1158045 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1158060 AAACCCCGAAACCCG-
1 AAA-CCCGAAACCCGA
1158075 AAA-CCGAAACCCCGCA
1 AAACCCGAAA-CCCG-A
1158091 TATAACCCG-AACCTGCG-
1 -A-AACCCGAAACC--CGA
1158108 AAACCCGGAAAACCCGTAA
1 AAACCC-G-AAACCCG--A
*
1158127 TATATATCCCTCGGAAAACTCGA
1 -A-A-A--CC-C-G-AAACCCGA
1158150 AAACCCGAAAGCCCTGA
1 AAACCCGAAA-CCC-GA
1158167 AAACTCCCTGAAACCCTG-
1 AAA--CCC-GAAACCC-GA
1158185 AAACCCGAAA-CCGA
1 AAACCCGAAACCCGA
*
1158199 AAACCCGAAACCCTGGG
1 AAACCCGAAACCC--GA
1158216 AAACCCG-AACCCG-
1 AAACCCGAAACCCGA
*
1158229 AAACCTCGGAAACCCTTA
1 AAACC-C-GAAACCC-GA
*
1158247 GAACCCTGAAAACCCG-
1 AAACCC-G-AAACCCGA
1158263 AAACCCGGAAACCCGGA
1 AAACCC-GAAACCC-GA
1158280 AAACCCGATGGAAACCCG-
1 AAACCC----GAAACCCGA
*
1158298 AAACTCTCGGACACCCG-
1 AAAC-C-C-GAAACCCGA
*
1158315 AAACCCGCAA-CCG-
1 AAACCCGAAACCCGA
* *
1158328 -AACCTGAAACCC-T
1 AAACCCGAAACCCGA
1158341 AAA-CCGAAA-CCGA
1 AAACCCGAAACCCGA
*
1158354 AAACCCGGAAACCCGG
1 AAACCC-GAAACCCGA
*
1158370 AACCCCTGAAACCCGA
1 AAACCC-GAAACCCGA
1158386 ATAACTCCGAAACCCGA
1 A-AAC-CCGAAACCCGA
* *
1158403 ATACCCGGGTAAACCCGG
1 AAACCC--G-AAACCCGA
* *
1158421 AACCCCGCATACCCGA
1 AAACCCG-AAACCCGA
* *
1158437 TTATACCCGGAACCC--
1 --AAACCCGAAACCCGA
1158452 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1158466 AAACCCGATAATACCATGGA
1 AAACCCG--AA-ACC--CGA
1158486 GGGAAACCCGAAA-CCGA
1 ---AAACCCGAAACCCGA
1158503 GAAA-CCGTCAAACCCGCTA
1 -AAACCCG--AAACCCG--A
***
1158522 CCTCCCGAAACCGCG-
1 AAACCCGAAACC-CGA
**
1158537 AAACCCGCAAA--AAA
1 AAACCCG-AAACCCGA
1158551 AAACCCGTAAACCCG-
1 AAACCCG-AAACCCGA
*
1158566 AAACCCTAAACCCGA
1 AAACCCGAAACCCGA
1158581 TAAACCCGAAACCCG-
1 -AAACCCGAAACCCGA
1158596 AAA-CCGAAACCTCGA
1 AAACCCGAAACC-CGA
*
1158611 AACCCCGGCAAACCC-A
1 AAACCC-G-AAACCCGA
*
1158627 AAA-CCGAAACCAG-
1 AAACCCGAAACCCGA
* *
1158640 AAACCAGAAACTCTCGG
1 AAACCCGAAAC-C-CGA
*
1158657 AACCCCGAAACCCGA
1 AAACCCGAAACCCGA
* * *
1158672 ATACACGAAACGCCGG
1 AAACCCGAAAC-CCGA
1158688 AAACCCGATAACCCG-
1 AAACCCGA-AACCCGA
1158703 AAACCCGAAACCCTG-
1 AAACCCGAAACCC-GA
1158718 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
1158731 AAACCCGAAA-CCGA
1 AAACCCGAAACCCGA
*
1158745 GAGGAAACCGAAAACCCGA
1 -A--AACCCG-AAACCCGA
*
1158764 AACCCCGAAACCCGA
1 AAACCCGAAACCCGA
1158779 AAA-CCG-AACCCG-
1 AAACCCGAAACCCGA
*
1158791 AAACCCTAAAACCCG-
1 AAACCC-GAAACCCGA
*
1158806 AAACCCGTACAACCCTA
1 AAACCCG-A-AACCCGA
*
1158823 AAACCCGTAAAAACCCGT
1 AAACCCG---AAACCCGA
1158841 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1158855 -CA-CCGAAACCCG-
1 AAACCCGAAACCCGA
1158867 AAA-CCGAAACCCGGA
1 AAACCCGAAACCC-GA
* *
1158882 TAACCC-TAACCCG-
1 AAACCCGAAACCCGA
1158895 AAA-CCGAAACCCG-
1 AAACCCGAAACCCGA
1158908 -AACCCG-AACCCG-
1 AAACCCGAAACCCGA
*
1158920 AAACACG-AACCCGGA
1 AAACCCGAAACCC-GA
*
1158935 AACCCCG-AACCCTG-
1 AAACCCGAAACCC-GA
1158949 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1158964 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
* *
1158978 AAACCTCGCAAATCCGG
1 AAACC-CG-AAACCCGA
*
1158995 AAACCCGAAACCCCAGG
1 AAACCCGAAA-CCC-GA
1159012 AAACCCTGATAACTCCG-
1 AAACCC-GA-AAC-CCGA
1159029 AAACCCGAAACTCCG-
1 AAACCCGAAAC-CCGA
1159044 AAACCCTGAAAACCCG-
1 AAACCC-G-AAACCCGA
1159060 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1159074 -AACCCGAATACTCCG-
1 AAACCCGAA-AC-CCGA
1159089 AAACCCGAAATCCCGA
1 AAACCCGAAA-CCCGA
1159105 AAACCTCGAAACCCGA
1 AAACC-CGAAACCCGA
*
1159121 AGACCCG-AA-CCG-
1 AAACCCGAAACCCGA
* *
1159133 AAACCTGAAAGCCCGC
1 AAACCCGAAA-CCCGA
* *
1159149 AATCCCGATAACCCTA
1 AAACCCGA-AACCCGA
* *
1159165 TAATCCCGAGTAACCGGA
1 -AAACCCGA--AACCCGA
1159183 TAAACCCGAGAACCCG-
1 -AAACCCGA-AACCCGA
1159199 AAACCCGGAAAATCCCG-
1 AAACCC-G-AAA-CCCGA
*
1159216 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
1159231 AAACTACCGATAAACCCG-
1 AAAC--CCG--AAACCCGA
1159249 AAACCCGAAAACCCGA
1 AAACCCG-AAACCCGA
1159265 AAATCCCGAAACTCTCGGGA
1 AAA-CCCGAAAC-C-C--GA
1159285 AAACCCGCGAAACCCGA
1 AAA-CC-CGAAACCCGA
*
1159302 ATACCCG-AA-CCG-
1 AAACCCGAAACCCGA
*
1159314 AACCTCCGAAATCCCGA
1 AAAC-CCGAAA-CCCGA
1159331 AAACCCGAAACCTCG-
1 AAACCCGAAACC-CGA
1159346 AAACCCGAATACTCC-A
1 AAACCCGAA-AC-CCGA
** *
1159362 ATTCTC--AA-CCGA
1 AAACCCGAAACCCGA
*
1159374 AACCCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1159388 AAACCCGCAAACCTG-
1 AAACCCG-AAACCCGA
1159403 AAACCCGAAACCCCGA
1 AAACCCGAAA-CCCGA
*
1159419 ATACTCCGTAATACCCGA
1 AAAC-CCG-AA-ACCCGA
*
1159437 ATACCCGGATAACCCGA
1 AAACCC-GA-AACCCGA
*
1159454 AAACCGGAAACTCCGA
1 AAACCCGAAAC-CCGA
1159470 AAGA-CCGAAACCCGA
1 AA-ACCCGAAACCCGA
* * *
1159485 AACCCCGAAAAACACGC
1 AAACCCG--AAACCCGA
*
1159502 GAACCCTGGAAACTCCG-
1 AAACCC--GAAAC-CCGA
1159519 AAACCCGAAACTCCG-
1 AAACCCGAAAC-CCGA
1159534 AAA---GAAA-CCGA
1 AAACCCGAAACCCGA
*
1159545 AATCCCGAAACCCAAGA
1 AAACCCGAAACCC--GA
*
1159562 AATACCCGAAACCCTGGC
1 AA-ACCCGAAACCC--GA
1159580 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1159595 ACACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1159610 TAACCCG-AACCCGA
1 AAACCCGAAACCCGA
*
1159624 ATA-CCGAAATCCCG-
1 AAACCCGAAA-CCCGA
*
1159638 AAACCCGCAAACTCCGT
1 AAACCCG-AAAC-CCGA
*
1159655 AAACCCGAAATGACTCCGG
1 AAACCCG-AA--AC-CCGA
* *
1159674 GACCCCG-AACCCGTGA
1 AAACCCGAAACCC--GA
*
1159690 ACACCC-AAACCCG-
1 AAACCCGAAACCCGA
1159703 AAACCCGGAAACCCG-
1 AAACCC-GAAACCCGA
1159718 AAACCTCGAAACCCG-
1 AAACC-CGAAACCCGA
*
1159733 AAACCCGAAACCCGT
1 AAACCCGAAACCCGA
1159748 AAACCCGAATACCCG-
1 AAACCCGAA-ACCCGA
* *
1159763 AAACACGAAACCGGA
1 AAACCCGAAACCCGA
1159778 ATAACCCG-AACCCG-
1 A-AACCCGAAACCCGA
1159792 AAACTCCGAAAAACCCG-
1 AAAC-CCG--AAACCCGA
1159809 --ACCCGGAAATCCCGA
1 AAACCC-GAAA-CCCGA
*
1159824 ATACCCG--ACCCGTGGA
1 AAACCCGAAACCC---GA
1159840 AAACCCGAAACCCCG-
1 AAACCCGAAA-CCCGA
* *
1159855 AAACCCG--A--TGT
1 AAACCCGAAACCCGA
1159866 AAACCC-AAA-CCGA
1 AAACCCGAAACCCGA
1159879 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1159893 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1159908 TAAACCCGAAAACCG-
1 -AAACCCGAAACCCGA
* *
1159923 CAACCCGCAACCCG-
1 AAACCCGAAACCCGA
1159937 AAACCCGGAAAACCCG-
1 AAACCC-G-AAACCCGA
*
1159953 CAA-CCGAAACCCGGA
1 AAACCCGAAACCC-GA
* *
1159968 GTAACCCGAAACCAG-
1 -AAACCCGAAACCCGA
1159983 AAACCCG-AA-CCG-
1 AAACCCGAAACCCGA
*
1159995 AAACCTGAAACCCG-
1 AAACCCGAAACCCGA
*
1160009 AAACCCGAATCCCG-
1 AAACCCGAAACCCGA
* *
1160023 AAACCCGCAACCC-T
1 AAACCCGAAACCCGA
*
1160037 AACCTCCGAAACCCG-
1 AAAC-CCGAAACCCGA
1160052 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1160067 TTAAACCCGAAACCCGG
1 --AAACCCGAAACCCGA
1160084 AAACCCGAAAAACCCGTGA
1 AAACCCG--AAACCC--GA
*
1160103 AAACCCGAAACCCGT
1 AAACCCGAAACCCGA
*
1160118 AAACCCGCGAACCCG-
1 AAACCCG-AAACCCGA
1160133 AAACCCGTAATACTCCG-
1 AAACCCG-AA-AC-CCGA
** * **
1160150 CCACCCTGGACACCCCTTT
1 AAACCC--GA-AACCC-GA
* *
1160169 GAACCCGAAACCCGC
1 AAACCCGAAACCCGA
**
1160184 AAACCCGAAACCCTT
1 AAACCCGAAACCCGA
1160199 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1160213 AAACCTCTTAAACCCG-
1 AAACC-C-GAAACCCGA
* *
1160229 AAAGCCGACACCCGA
1 AAACCCGAAACCCGA
*
1160244 TTAATCCCGAAA-CCG-
1 --AAACCCGAAACCCGA
1160259 AAACCCGAAACCCGGAAA
1 AAACCCGAAACCC-G--A
1160277 CGAAACCCGAAACCCGAA
1 --AAACCCGAAACCCG-A
*
1160295 GAAACCGGAAATCCCGGA
1 -AAACCCGAAA-CCC-GA
* *
1160313 AAACCAGAACCCCG-
1 AAACCCGAAACCCGA
1160327 AAACCCGGAATACCTCGA
1 AAACCC-GAA-ACC-CGA
*
1160345 AAAGCCTCGAAACCCGG
1 AAA-CC-CGAAACCCGA
1160362 AAACCCG-AACCCGA
1 AAACCCGAAACCCGA
1160376 AAACTCCGAAA-CCG-
1 AAAC-CCGAAACCCGA
1160390 AAA-CCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1160404 AACCCCTAAAACCCG-
1 AAACCC-GAAACCCGA
1160419 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
**
1160433 AAACCCTGTAAATACG-
1 AAACCC-G-AAACCCGA
*
1160449 AAACCGGATGAACCCGA
1 AAACCCGA--AACCCGA
* * *
1160466 GAACCCGAAACCTGGGG
1 AAACCCGAAACC--CGA
1160483 AAACCCGATAA-CCG-
1 AAACCCGA-AACCCGA
1160497 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1160511 -AACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1160524 AATCCCGAAA-CCG-
1 AAACCCGAAACCCGA
1160537 AAA-CCGAAA-CCG-
1 AAACCCGAAACCCGA
1160549 AAACCCGAAACCCCGA
1 AAACCCGAAA-CCCGA
* * *
1160565 TAACCCGGAATCCAGTA
1 AAACCC-GAAACCCG-A
*
1160582 AATTCCCCGGAAAACCCGGA
1 AA--ACCC-G-AAACCC-GA
1160602 AAACCCGAAACCTCG-
1 AAACCCGAAACC-CGA
**
1160617 AAACCC-AAACCCTC
1 AAACCCGAAACCCGA
1160631 AAACCCGAGAAACCCG-
1 AAACCC--GAAACCCGA
1160647 AAA-CCGAAACCCG-
1 AAACCCGAAACCCGA
1160660 AAACCCGATAACCCGGA
1 AAACCCGA-AACCC-GA
* *
1160677 AACCCCGAAACCGGA
1 AAACCCGAAACCCGA
*
1160692 CAACCCGAGAACCCGA
1 AAACCCGA-AACCCGA
*
1160708 TCAACCCGAAACCCGA
1 -AAACCCGAAACCCGA
1160724 AAA-CC-AAACCCGA
1 AAACCCGAAACCCGA
*
1160737 TAACTCCGAAACCCGA
1 AAAC-CCGAAACCCGA
*
1160753 TAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1160768 AAACCCGAATACCCGGGGA
1 AAACCCGAA-ACCC---GA
*
1160787 AACCCCGAAACCTCG-
1 AAACCCGAAACC-CGA
*
1160802 AAACCCGAAACTCGA
1 AAACCCGAAACCCGA
* *
1160817 ATACCGTCGAAACCCGT
1 AAACC--CGAAACCCGA
*
1160834 AAACCAGATAACCCG-
1 AAACCCGA-AACCCGA
1160849 AAACCCGAACAAACCCG-
1 AAACCCG---AAACCCGA
* *
1160866 TACCCCGGGAAACCCTG-
1 AAACCC--GAAACCC-GA
1160883 AAACCTTCGAAAACTCCGGA
1 AAACC--CG-AAAC-CC-GA
1160903 TAAACCCGTAAAAACCCGGGA
1 -AAACCCG---AAACCC--GA
*
1160924 TAAACCCGATA-CCGA
1 -AAACCCGAAACCCGA
1160939 TTTAAACCCG-AACCCGA
1 ---AAACCCGAAACCCGA
1160956 AAACCCTG-AA---GA
1 AAACCC-GAAACCCGA
1160968 GAAACCTCG-AACCTC-A
1 -AAACC-CGAAACC-CGA
1160984 GAAACTCCGAAACCCG-
1 -AAAC-CCGAAACCCGA
1161000 AAACCCGAAAACCCG-
1 AAACCCG-AAACCCGA
*
1161015 -AACCCTAAACCTC--
1 AAACCCGAAACC-CGA
1161028 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161042 AAACCCGGAAA-CCGA
1 AAACCC-GAAACCCGA
*
1161057 CAATCCCGAAACCCGAA
1 -AAACCCGAAACCCG-A
*
1161074 AAACCCGAAATAAACTCGA
1 AAACCCG----AAACCCGA
1161093 AAACCCG-AACCCGA
1 AAACCCGAAACCCGA
*
1161107 TAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161121 AAACCCGAAAACCCGA
1 AAACCCG-AAACCCGA
*
1161137 CTGAAACACCGACACTCCG-
1 ---AAAC-CCGAAAC-CCGA
1161156 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1161171 AAACCCGAATACCCGA
1 AAACCCGAA-ACCCGA
* *
1161187 CAACCTGAAACCCGA
1 AAACCCGAAACCCGA
1161202 AAACCCG-AACCCG-
1 AAACCCGAAACCCGA
1161215 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161229 AAACCCGAAAACCCG-
1 AAACCCG-AAACCCGA
1161244 AAACCCGAAACCCGAA
1 AAACCCGAAACCCG-A
1161260 CGAAACCCGAAACCCCG-
1 --AAACCCGAAA-CCCGA
1161277 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1161292 ACACCCGAAATCCGA
1 AAACCCGAAACCCGA
* *
1161307 TAACCCGAAATCCTGA
1 AAACCCGAAA-CCCGA
*
1161323 GAAACCCG----CGGA
1 -AAACCCGAAACCCGA
1161335 AATACCCTAGAAAACCCG-
1 AA-ACCC--G-AAACCCGA
*
1161353 AAACCCGAAACGCTG-
1 AAACCCGAAAC-CCGA
*
1161368 AAACCCGACACCCG-
1 AAACCCGAAACCCGA
1161382 -AA-CCGATAACCCGA
1 AAACCCGA-AACCCGA
1161396 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1161411 GAAACCCGATAACCCGA
1 -AAACCCGA-AACCCGA
1161428 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161442 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1161457 TAAA-CCGAACCCCG-
1 -AAACCCGAAACCCGA
1161471 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
* *
1161485 AAACCAGAACACTCG-
1 AAACCCGAA-ACCCGA
1161500 AAACCCGGAAACCCG-
1 AAACCC-GAAACCCGA
1161515 AAA-CCGAAACCCGA
1 AAACCCGAAACCCGA
*
1161529 ATACCCGTAAAACCCGAA
1 AAACCCG--AAACCCG-A
1161547 AAATGCCCGAAACCCG-
1 AAA--CCCGAAACCCGA
1161563 AAA-CCGAAA-CCG-
1 AAACCCGAAACCCGA
1161575 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161589 AAACCCGAAACCCCG-
1 AAACCCGAAA-CCCGA
* *
1161604 AGACCCTAAACCCCGA
1 AAACCCGAAA-CCCGA
1161620 AAACCTCGGAGAAACCCG-
1 AAACC-C---GAAACCCGA
*
1161638 AAACCGGAAACCCG-
1 AAACCCGAAACCCGA
1161652 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161666 AAACCC-AAA-CCGA
1 AAACCCGAAACCCGA
1161679 GAATGCACCCGAAACCCG-
1 -AA---ACCCGAAACCCGA
1161697 AAACCCGAGAACCCG-
1 AAACCCGA-AACCCGA
1161712 AAACCCGAAAACCCGGGA
1 AAACCCG-AAACCC--GA
1161730 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161744 AAACCCGAGAA-CCGA
1 AAACCCGA-AACCCGA
*
1161759 AATCCTCGAAACCCGA
1 AAACC-CGAAACCCGA
*
1161775 AATCCTCGACAACCCG-
1 AAACC-CGA-AACCCGA
1161791 AAA-CCG-AACCCG-
1 AAACCCGAAACCCGA
*
1161803 AAACCCGGAAACCCGG
1 AAACCC-GAAACCCGA
1161819 AAACCCGAAATCCCGA
1 AAACCCGAAA-CCCGA
1161835 AAACCCGAACGAAACCGCG-
1 AAA-CC---CGAAACC-CGA
1161854 AAACCCGACAACCCCGGA
1 AAACCCGA-AA-CCC-GA
1161872 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1161887 ACA-CC-AAACCCGT
1 AAACCCGAAACCCGA
* *
1161900 GAACCCGAAAACCG-
1 AAACCCGAAACCCGA
1161914 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
*
1161927 AAATCCGAAACCCCCGCA
1 AAACCCGAAA--CCCG-A
* *
1161945 TACCCCGAAACCCG-
1 AAACCCGAAACCCGA
1161959 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1161973 AAACCCGAAAACCCGA
1 AAACCCG-AAACCCGA
* *
1161989 AACCCCGAACCCCG-
1 AAACCCGAAACCCGA
1162003 AAACTCCGATAACCCGGA
1 AAAC-CCGA-AACCC-GA
* **
1162021 AAACCTATGGTCACCCCCTGA
1 AAACC---CG--AAACCC-GA
* *
1162042 AAACCCGTAAACTCGT
1 AAACCCG-AAACCCGA
1162058 AAACCCG-AA-CCGA
1 AAACCCGAAACCCGA
1162071 AAACCCGAAAACCCG-
1 AAACCCG-AAACCCGA
1162086 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162100 AAACCCTGAAACCCG-
1 AAACCC-GAAACCCGA
1162115 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* * *
1162130 TAACCC-TAACCCGT
1 AAACCCGAAACCCGA
1162144 AAACCCGAAAACCCG-
1 AAACCCG-AAACCCGA
*
1162159 ACACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162173 -AACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1162186 AACCCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1162201 GAA-CCGAAAACCCCGA
1 AAACCCG-AAA-CCCGA
*
1162217 ATACCC--AACCCTGA
1 AAACCCGAAACCC-GA
1162231 TCAAACCCGAAACCCG-
1 --AAACCCGAAACCCGA
1162247 AAACCCGAAACCTCG-
1 AAACCCGAAACC-CGA
1162262 AAACCCGGAAACCCG-
1 AAACCC-GAAACCCGA
1162277 AAACCCG-AACTCCG-
1 AAACCCGAAAC-CCGA
*
1162291 ATACCCGAACACCCG-
1 AAACCCGAA-ACCCGA
1162306 AAA-CCGAAACCC-A
1 AAACCCGAAACCCGA
1162319 AAACCCGCGAAACCCGA
1 AAA-CC-CGAAACCCGA
1162336 AAACCCGTAAACCCGA
1 AAACCCG-AAACCCGA
** *
1162352 ACTCCTGAAACCCGA
1 AAACCCGAAACCCGA
1162367 AAACCTCGAAACCCG-
1 AAACC-CGAAACCCGA
1162382 AAACCCGAAAACCCGTA
1 AAACCCG-AAACCCG-A
* *
1162399 AAACCCGAGAACCAGGG
1 AAACCCGA-AACC-CGA
1162416 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162430 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
1162443 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162457 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162471 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1162486 GTAACCCCTGAAACCTCGA
1 --AAACCC-GAAACC-CGA
*
1162505 AATCCCGAAACCCCGTGA
1 AAACCCGAAA-CCC--GA
*
1162523 ATACTCCGGAAACCCGA
1 AAAC-CC-GAAACCCGA
*
1162540 ACACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162554 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1162569 ATACCGGAAAACCCGA
1 AAACCCG-AAACCCGA
1162585 AAACCCGAAACCCCG-
1 AAACCCGAAA-CCCGA
*
1162600 AAACCCGGAACCCG-
1 AAACCCGAAACCCGA
1162614 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1162629 AAA-CCGAAACCCGA
1 AAACCCGAAACCCGA
* * *
1162643 ATACCCTGCAACCCGC
1 AAACCC-GAAACCCGA
* *
1162659 TAACCCGAATCCCTGA
1 AAACCCGAAACCC-GA
*
1162675 GAAACCTAGAAACCCGA
1 -AAACC-CGAAACCCGA
*
1162692 AAA-CCG-CACCTC--
1 AAACCCGAAACC-CGA
*
1162704 AAACCCGAAA-CCGG
1 AAACCCGAAACCCGA
1162718 AAA-CCGAAACTCTCGTA
1 AAACCCGAAAC-C-CG-A
*
1162735 AAAACCGAAA----A
1 AAACCCGAAACCCGA
1162746 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1162761 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1162776 AAACCCGAAACACGA
1 AAACCCGAAACCCGA
*
1162791 AATACCCGGAAACCC-T
1 AA-ACCC-GAAACCCGA
1162807 AAACCCGAAA-CCG-
1 AAACCCGAAACCCGA
**
1162820 ACCCCCGTAAACCGTTCG-
1 AAACCCG-AAACC---CGA
*
1162838 AAACCCTAAACCCG-
1 AAACCCGAAACCCGA
* *
1162852 AACCCCGAAACCCGG
1 AAACCCGAAACCCGA
*
1162867 AAACCTGAAATACTCCG-
1 AAACCCG-AA-AC-CCGA
1162884 AAACCCGAAAACCCG-
1 AAACCCG-AAACCCGA
1162899 AAACCCGGTAAAACCCGA
1 AAACCC-G--AAACCCGA
* *
1162917 GATACCCGGAACCCGGA
1 -AAACCCGAAACCC-GA
*
1162934 AACTCCCTGGAAAACCCGA
1 AA-ACCC--G-AAACCCGA
1162953 AAACCCCGAAA-CCG-
1 AAA-CCCGAAACCCGA
*
1162967 AAACCCG-AACCCGC
1 AAACCCGAAACCCGA
1162981 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1162995 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1163009 AAA-CCGCAAACCCGA
1 AAACCCG-AAACCCGA
*
1163024 GAAATCCCCGGAAACCCGG
1 -AAA--CCC-GAAACCCGA
*
1163043 AAA--CGACTACCGCGCGGA
1 AAACCCGA--AAC-C-C-GA
1163061 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1163076 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
* *
1163091 AAACCGGAACCCCG-
1 AAACCCGAAACCCGA
1163105 AAACCCGATAACCCG-
1 AAACCCGA-AACCCGA
* *
1163120 GACCCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1163135 AACCCCGAAAATCCCG-
1 AAACCCG-AAA-CCCGA
* *
1163151 AAATCTGAAACCCGA
1 AAACCCGAAACCCGA
*
1163166 AATCCC-AAACCCGA
1 AAACCCGAAACCCGA
*
1163180 ATACCCGTAAACTCCG-
1 AAACCCG-AAAC-CCGA
1163196 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1163210 AAACCCGAAA-TC--
1 AAACCCGAAACCCGA
*
1163222 -ATCCCGAAATCCCCGTA
1 AAACCCGAAA--CCCG-A
**
1163239 CCACCCGAAACCCGGA
1 AAACCCGAAACCC-GA
* *
1163255 TACCCCGAAACCCG-
1 AAACCCGAAACCCGA
1163269 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1163283 AAACCCGAAA-CCGA
1 AAACCCGAAACCCGA
* *
1163297 AAGCCCG-AA-CCGT
1 AAACCCGAAACCCGA
1163310 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1163325 CATACCCGAGGAAACCGA
1 -AAACCCGA--AACCCGA
1163343 AAACCCCGAAACCTCCCG-
1 AAA-CCCGAAA---CCCGA
*
1163361 AAACCCGATAA-TCGAA
1 AAACCCGA-AACCCG-A
1163377 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
1163392 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1163406 AAACCCGAACCCCG-
1 AAACCCGAAACCCGA
*
1163420 AAACCCAAAACCCGAGA
1 AAACCCGAAACCC--GA
*
1163437 AAACCCG-AACCCGG
1 AAACCCGAAACCCGA
*
1163451 AAACCCTAAACCCG-
1 AAACCCGAAACCCGA
* *
1163465 -CACCCGAAACCCGG
1 AAACCCGAAACCCGA
1163479 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1163493 AAACCCGAAA-CCGA
1 AAACCCGAAACCCGA
1163507 AAACTCCGAAA-CCG-
1 AAAC-CCGAAACCCGA
1163521 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1163535 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1163550 AAACCCGTAAGAGCCC-T
1 AAACCCG-AA-A-CCCGA
1163567 AAA-CCGACAAACCCG-
1 AAACCCG--AAACCCGA
1163582 AAACCCGATAACCCG-
1 AAACCCGA-AACCCGA
1163597 AAACCCGATAACCCGA
1 AAACCCGA-AACCCGA
1163613 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
**
1163628 TCACCCGAAACCCGA
1 AAACCCGAAACCCGA
* *
1163643 AACCCCG-AACCCGG
1 AAACCCGAAACCCGA
1163657 AAACCCGAAACTCCGA
1 AAACCCGAAAC-CCGA
* *
1163673 AATCCCCAAACCCG-
1 AAACCCGAAACCCGA
*
1163687 AAACCCGAAAACCGTGAA
1 AAACCCG-AAACC-CG-A
1163705 GAAACCCGAAACCCGA
1 -AAACCCGAAACCCGA
* *
1163721 AATCCCGAAACCCGG
1 AAACCCGAAACCCGA
1163736 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1163750 AAACCCGAAATCCCGA
1 AAACCCGAAA-CCCGA
**
1163766 AAACCTTAAACCCG-
1 AAACCCGAAACCCGA
1163780 -AACTCCG-AACCCG-
1 AAAC-CCGAAACCCGA
*
1163793 AAACCCGAAACCCGC
1 AAACCCGAAACCCGA
*
1163808 AACCCCGAAACCCG-
1 AAACCCGAAACCCGA
1163822 AAACCCGAAACCCGCA
1 AAACCCGAAACCCG-A
1163838 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
1163852 -AACCCGACAAACCCGA
1 AAACCCG--AAACCCGA
* **
1163868 AACCCCGGAAACCCCT
1 AAACCC-GAAACCCGA
* *
1163884 AACCCCGAACCCTCG-
1 AAACCCGAAACC-CGA
* *
1163899 AACCCCGAACCCCGA
1 AAACCCGAAACCCGA
**
1163914 ACCCCCGAAACCCG-
1 AAACCCGAAACCCGA
1163928 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
*
1163942 AAA-CCGAACCCCG-
1 AAACCCGAAACCCGA
* *
1163955 AACCCCTAAACCCG-
1 AAACCCGAAACCCGA
1163969 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
* *
1163983 AAACCCTTAAA-CGGA
1 AAACCC-GAAACCCGA
* *
1163998 AATCCAGAAA-CCGA
1 AAACCCGAAACCCGA
*
1164012 AAACCCGAAAACACG-
1 AAACCCG-AAACCCGA
*
1164027 -AACACGAAACCCTGA
1 AAACCCGAAACCC-GA
* *
1164042 AAACCCTAAAACACGA
1 AAACCC-GAAACCCGA
*
1164058 AAA-CCGAAACCGGA
1 AAACCCGAAACCCGA
*
1164072 AAACCCGAAACCAGTA
1 AAACCCGAAACCCG-A
*
1164088 AAACCCCTAAACCTCGA
1 AAA-CCCGAAACC-CGA
*
1164105 AAAACCG-AACCCG-
1 AAACCCGAAACCCGA
** *
1164118 AAACAAGAAAACTCG-
1 AAACCCG-AAACCCGA
* * *
1164133 AAACACGACA-CC-T
1 AAACCCGAAACCCGA
* *
1164146 AAACGCCTACA-CCGA
1 AAAC-CCGAAACCCGA
* *
1164161 AAACCCGAAATCC-T
1 AAACCCGAAACCCGA
*
1164175 AAACCCGGAACCCGA
1 AAACCCGAAACCCGA
1164190 AAACCCGAAACCCG-
1 AAACCCGAAACCCGA
**
1164204 -AACCCGAAA-CCTT
1 AAACCCGAAACCCGA
* *
1164217 AAACCAGATACCCG-
1 AAACCCGAAACCCGA
1164231 AAACCCGAAACCCTG-
1 AAACCCGAAACCC-GA
*
1164246 ATA----AAACCCG-
1 AAACCCGAAACCCGA
*
1164256 AAACCCGAAACCCGG
1 AAACCCGAAACCCGA
1164271 AAACCCGAAACCCGA
1 AAACCCGAAACCCGA
*
1164286 AAACCCGATAAACCG-
1 AAACCCGA-AACCCGA
*
1164301 AAA-CCTAAACCCG-
1 AAACCCGAAACCCGA
** *
1164314 AAACCATAAATCCGA
1 AAACCCGAAACCCGA
*
1164329 AAA-CCTAAACACCGA
1 AAACCCGAAAC-CCGA
*
1164344 ACAA-CAG-AACCCGAA
1 A-AACCCGAAACCCG-A
*
1164359 AAACCCGAAACAC-A
1 AAACCCGAAACCCGA
**
1164373 GAAA-CCG-AACCATA
1 -AAACCCGAAACCCGA
* *
1164387 AAACCTGAAACCC-T
1 AAACCCGAAACCCGA
*
1164401 AAACCCTAAACCCGA
1 AAACCCGAAACCCGA
* * *
1164416 AACCCCTAAAACCC-T
1 AAACCC-GAAACCCGA
1164431 AAACCCGAAACCC
1 AAACCCGAAACCC
1164444 TTAAACCCGT
Statistics
Matches: 7850, Mismatches: 874, Indels: 2202
0.72 0.08 0.20
Matches are distributed among these distances:
10 14 0.00
11 51 0.01
12 172 0.02
13 668 0.09
14 1580 0.20
15 1949 0.25
16 1381 0.18
17 1031 0.13
18 492 0.06
19 296 0.04
20 143 0.02
21 46 0.01
22 7 0.00
23 8 0.00
24 2 0.00
25 10 0.00
ACGTcount: A:0.40, C:0.39, G:0.15, T:0.06
Consensus pattern (15 bp):
AAACCCGAAACCCGA
Found at i:1154725 original size:16 final size:17
Alignment explanation
Indices: 1154691--1154727 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
1154681 TGAAACTCCG
1154691 AACCCCGAAACCTCGTA
1 AACCCCGAAACCTCGTA
*
1154708 AACCCCGACACC-CGTA
1 AACCCCGAAACCTCGTA
1154724 AACC
1 AACC
1154728 GAAAACCGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.35, C:0.46, G:0.11, T:0.08
Consensus pattern (17 bp):
AACCCCGAAACCTCGTA
Found at i:1155065 original size:26 final size:26
Alignment explanation
Indices: 1155036--1155086 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1155026 AATTCCCGGA
*
1155036 AAACCCGACAACCT-CGAAACCCGAAT
1 AAACACGA-AACCTCCGAAACCCGAAT
1155062 AAACACGAAACCTCCGAAACCCGAA
1 AAACACGAAACCTCCGAAACCCGAA
1155087 ACCCGAATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.45, C:0.37, G:0.12, T:0.06
Consensus pattern (26 bp):
AAACACGAAACCTCCGAAACCCGAAT
Found at i:1155156 original size:116 final size:107
Alignment explanation
Indices: 1154607--1164419 Score: 3268
Period size: 116 Copynumber: 85.6 Consensus size: 107
1154597 GAGAGACAGA
*
1154607 AACCCG-AA-CCGAAACCGGAAACCCGAAAACCCG-AAACCG-AAACCCGAAACCCG-AACTCCG
1 AACCCGAAACCCGAAACCCGAAACCCG--AACCCGAAAACCGAAAACCCGAAACCCGAAAC-CCG
* * * *
1154667 AAACTCCGACACCCTGAAACTCCG-AACCCCGAAACCTCGTAAACCCCGA
63 AAA--CCGAAACCCGGAAAC-CCGAAACCTCGAAACC-CG-AAAACCCGA
* * * ** * *
1154716 CACCCGTAAA-CCGAAAACCGCAACCCAGCCCCCGAGAACCCGCAAACCCGAAACTCCGAAACCC
1 AACCCG-AAACCCGAAACCCGAAACCC-GAACCCGA-AAACCGAAAACCCGAAAC-CCGAAACCC
* *
1154780 GAAACCCTGGAAACAC-GTAACCCGAAA---CGAAACCCGGAAAAACCCTGAA
62 GAAA-CC--GAAACCCGGAAACCCGAAACCTCGAAACCC-G-AAAACCC-G-A
*
1154829 AACCCCGAAACCCCGAAACCCGAAACCCGAAACCCGAAACCCG--AACCCGAAACCCGGAGAAAT
1 AA-CCCGAAA-CCCGAAACCCGAAACCCG-AACCCGAAAACCGAAAACCCGAAACCC---G-AA-
* * *
1154892 ACCCGAAACCCGGGAAACCC-GAAACCCGGAACCCCGAAACCCGGAAACCCGA
58 ACCCGAAA-CC--GAAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* * *
1154944 AACCCGAAA-CCGACAACCCGCCACACCCGAAAAACCCCG-AATCCGCCGAAACCTCGAAAACCC
1 AACCCGAAACCCGA-AACCCG--AAACCCG---AA-CCCGAAAACCG--AAAACC-CG-AAACCC
* *
1155007 GAAACCCTGAAATCTCCAAAATTCCCGGAAAACCCGACAACCTCGAAACCCGAATAAACACGA
55 GAAACCC-GAAA---CCGAAA--CCCGG-AAACCCGA-AACCTCGAAACCCG-A-AAACCCGA
*
1155070 AACCTCCGAAACCCGAAACCCGAATACCCTTGAACCCTTAAAACCGAAAACCCGAAACCCGAAAC
1 AA-C-CCGAAACCCGAAACCCGAA-ACCC--GAACCC-GAAAACCGAAAACCCGAAACCCGAAAC
1155135 CCGAAACCGAAACCCGGAAACCCGCGGAAACC-CGAAA-CCG--AACCCG-
60 CCGAAACCGAAACCCGGAAA-CC-C-GAAACCTCGAAACCCGAAAACCCGA
* * *
1155181 CACCCGAAACCCGAAACCTCGACACCCGAAACCCGAAAACCCG-AAACCCGAAACACGAAACCCG
1 AACCCGAAACCCGAAACC-CGAAACCCG-AACCCGAAAA-CCGAAAACCCGAAACCCGAAACCC-
*
1155245 GGCATAACCCGAAA---AGAAACCCGGAAACCTCGAAACCCCG-AAACCCGGATGA
62 -G-A-AA-CCGAAACCCGGAAACCC-GAAACCTCGAAA-CCCGAAAACCC----GA
* * * * * * *
1155297 AACCCGAAACCCGCAACCCGAACACACGAAACCCGCAACCCGAAACCCTCAACAACACGAAAACC
1 AACCCGAAACCCGAAACCCGAA-ACCCG-AACCCGAAAACCGAAAACC-CGA-AACCCG-AAACC
* * * * * *
1155362 CG-GA-GGAAACCCGAAAAACCGCAACCCCGGATAACCCG-AAACTCCGA
61 CGAAACCGAAACCCGGAAACCCGAAACCTC-GA-AACCCGAAAAC-CCGA
*
1155409 AACCCGAAACCTCGAATATCCCGAAACCCGAAACTCCGAATACCCCGAAAACCCGAAACCCGAAA
1 AACCCGAAACC-CGAA-A-CCCGAAACCCG-AAC-CCGAA-A-ACCGAAAACCCGAAACCCG-AA
* * * *
1155474 ACCTCAAAACCCGCTAACCC-G-AACCCGGAAA-C-CGAAAACCGAACACCTCGA
58 ACC-CGAAA-CCG-AAACCCGGAAACCC-GAAACCTCGAAACCCGAAAACC-CGA
*
1155525 AACCCGAAAAACTCCGAAACCCGAAACCCGAAACCCG-AACCCGAAAACCCGTAAACCCGAAACC
1 AACCCG--AAAC-CCGAAACCCGAAACCCG-AACCCGAAAACCGAAAACCCG-AAACCCGAAACC
* *
1155589 CGGAAACCCGGAAACCCGCAACCCCGGAAACC-CGAAACCCG-AAA-CCGA
61 C-GAAA-CC-GAAACCCGGAAACCC-GAAACCTCGAAACCCGAAAACCCGA
* * *
1155637 AACCCTGAAACCCGAAACCCGAAACCCGAA-CCGGAACCCGAAAACCCGAAACCCGAAACCCGAG
1 AACCC-GAAACCCGAAACCCGAAACCCGAACCCGAAAACCGAAAACCCGAAACCCGAAACCCGAA
****
1155701 GGAAAAACCCGGCAAACCCGAAAACC-CGTAAACCCGAAAACCCTGAA
65 ACCGAAACCCGG-AAACCCG-AAACCTCG-AAACCCGAAAACCC-G-A
** *
1155748 AATCCCGAAAACCCG----GGGAAACCCGAACCCGAAACCCG-AAACCCGAAA-CCGATAAAATC
1 AA-CCCG-AAACCCGAAACCCGAAACCCGAACCCGAAAACCGAAAACCCGAAACCCG---AAA-C
* * *
1155807 CTGTAAACCCGTAACACCCGAAGAAACCCGAAACC-CG-ACCCCGAAATCCCG-
60 CCG-AAA-CCG-AA-ACCCG--GAAACCCGAAACCTCGAAACCCGAAAACCCGA
* *
1155858 AACTCCGAGAAACCCGAAA----AAACCCGAAACCCG-AACCCGTGAAACCCGAAACCCGGTAAA
1 AAC-CC--GAAACCCGAAACCCGAAACCCG-AACCCGAAAACCG-AAAACCCGAAACCC-G-AAA
* * * * *
1155918 CCCGAAA-CGAAAACCCCCGAAA----AGACC-CGATACCGGTATAACCCGA
59 CCCGAAACCG-AAA-CCCGGAAACCCGAAACCTCGAAACCCG-AAAACCCGA
* *
1155964 AACCCGATAACCCGGTAA-CCGAATACCCGAATACCGAATAACTCCG-AAACCCGAAACCCG-AA
1 AACCCGA-AACCC-GAAACCCGAA-ACCCGAA-CCCGAA-AA--CCGAAAACCCGAAACCCGAAA
*
1156026 CCCGAAACCGCAACCC-GAAACCCG-AACC-CGAAAATCCCG--AACCCGA
59 CCCGAAACCGAAACCCGGAAACCCGAAACCTCG-AAA-CCCGAAAACCCGA
* * * *
1156072 CATCCCGAAACCTCCGAAACCCGAAAACCCGAA--GGTAAACCCG-AAACCCGAAAACCCGCAAC
1 -AACCCGAAA-C-CCGAAACCCG-AAACCCGAACCCG-AAAACCGAAAACCCG-AAACCCGAAAC
* *
1156134 CCG--A--GATAACCC-GAAACCCGTAAACC-AGAATACCGCTAAAACCCGA
60 CCGAAACCGA-AACCCGGAAACCCG-AAACCTCGAA-ACC-CGAAAACCCGA
* * * *
1156180 AACCCTGGAAACCCGAAA---GAAACCCGAATAAACCGATAACCGAAAAACCGAAAAACCGAAAC
1 AACCC--GAAACCCGAAACCCGAAACCCG---AACCCGAAAACCGAAAACCCG-AAACCCGAAAC
* *
1156242 TCGAACCCGAAAACCC-GAAACTCCGAAACCTGCGAGAACCCGAAAACCCGA
60 CCGAAACCG-AAACCCGGAAAC-CCGAAACCT-CGA-AACCCGAAAACCCGA
* *
1156293 CA-CCGAACACCCGAAATATCCCGAAATTGCCCGCAATACCCGAAACCTCCGAAAACCCGAAATC
1 AACCCGAA-ACCCG-AA-A-CCCGAAA---CCCG--A-ACCCGAAA--ACCGAAAACCCGAAA-C
*
1156357 CCGACACCCGAAACCCGAAACCCGGAAAACCCGAAAACC-CGAAACCCG-AAACCCGA
53 CCGAAACCCGAAA-CCGAAACCCGG-AAACCCG-AAACCTCGAAACCCGAAAACCCGA
* *
1156413 AACCCGAAACTCCGAAACCCGAAAACCCGAAAACCCGAATACCCGAGAACCCGAAATCCCGAAAA
1 AACCCGAAAC-CCGAAACCCG-AAACCCG--AACCCGAA-AACCGAAAACCCGAAA-CCCG--AA
* * * * *
1156478 ACCGTCTTAATCCCGAAACCC-GAGACCCAAAACC-CG-AACCCGAGCAACCCGA
58 ACC--C-GAA-ACCGAAACCCGGAAACCCGAAACCTCGAAACCCGA-AAACCCGA
* * * **** **
1156530 AATCCCGAAACCCGATACCCCGACAATCCTAAAATTAATCCCG-AAACCCGAAAAACCCGGGAAA
1 AA-CCCGAAACCCGA-AACCCGA-AACCCGAACCCGAAAACCGAAAACCCG--AAACCC--GAAA
* *
1156594 CCCGAAAACCCGAAACCCGAAATACCCG-AACCCCGAAACCCCG-AAACGCCGGGA
59 CCCG-AAA-CCGAAACCCGGAA-ACCCGAAACCTCGAAA-CCCGAAAAC-CC--GA
* * * * * *
1156648 AA-CCGTAAACCTCGGAATGACCCTGAAACCGGACCCCGCAACCCG-TACCCCGAAAACCCGAAA
1 AACCCG-AAACC-C-GAA--ACCC-GAAACCCGAACCCGAAAACCGAAAACCCG-AAACCCGAAA
1156711 CTCTCGAAATCCAGAAACCC--AATACGTCCGAAA-CTCCGAAACCCGGATAAACCCGA
59 C-C-CGAAA-CC-GAAACCCGGAA-AC--CCGAAACCT-CGAAACCC-GA-AAACCCGA
*
1156767 AACCCGAAACCCGAAACCCGACAAACCCGAAACCCGAAAACCTCG-AAACTCCGAATCCCCGTAA
1 AACCCGAAACCCGAAACCCG--AAACCCG-AACCCGAAAA-C-CGAAAAC-CCGAA-ACCCG-AA
* * * **
1156831 ACCCGGAAAACCCCGAATA-CC-GAAACCTCGAATCTTCCGATAATCCAGAAAATACGA
58 ACCC-G-AAA--CCGAA-ACCCGGAAACC-CGAAACCT-CGA-AA-CCCGAAAACCCGA
* *
1156888 AATCCCG-AACCTCGAAACCCGAAACTCCGTTAAACCCTGAAACCCGATACACCTCG-AA-CCGA
1 AA-CCCGAAACC-CGAAACCCGAAAC-CCG---AACCC-GAAAACCGA-AAACC-CGAAACCCGA
*
1156950 AAACCGAAAACCCGAAACTCC-GAAACCCGAAAACC-CGAAATCCCGAAAACCCGTA
57 AACCCG-AAA-CCGAAAC-CCGGAAACCCG-AAACCTCGAAA-CCCGAAAACCCG-A
* *
1157005 AA-CCGAAACCCGGAAAACCCCGAAAACCTCGAACGCCCGAAATATCCCGAAAAACCG-CACCCG
1 AACCCGAAACCC-G-AAA-CCCG-AAACC-CGAA--CCCGAAA-A--CCGAAAACCCGAAACCCG
* *** * *
1157068 ATACCCGGAAACCCG-AA-TTAG-AACCCGAGACC-CGACAAACCCGAAACCCCGA
56 AAACCC-GAAA-CCGAAACCCGGAAACCCGAAACCTCG--AAACCCGAAAACCCGA
* * *
1157120 AACCCGGAAACCCGCAATAAACCGAAACCCGGGAATACCCGAAACCCGTAAACCCGAAACCCTGA
1 AACCC-GAAACCCG--A-AACCCGAAACCC--G-A-ACCCGAAAACCGAAAACCCGAAACCC-GA
1157185 AA-CCG-AACCGCTAATATAACCCGCTGAAACCCGAAACC-CGTAAACCCGTAAAACCCGA
57 AACCCGAAACCG-----A-AACCCG--GAAACCCGAAACCTCG-AAACCCG-AAAACCCGA
*
1157243 AA---GACAACCGTCGAAACCCGATAACCCGAAACCCGGAATACCCGAAAAACCTCGAAACCCGA
1 AACCCGA-AACC--CGAAACCCGA-AACCCG-AACCC-GAA-AACCG-AAAACC-CGAAACCCGA
* * * *
1157305 AACCCGAATCCCCG-AACCC-GAAATCCCG-CACCCCG-AACCCGAATACCCTGA
57 AACCCGAA--ACCGAAACCCGGAAA-CCCGAAACCTCGAAACCCGAAAACCC-GA
* * *
1157356 ATACCCGAAACCCGAAACCCGCAACCCGACAAACCCGAAACTCCGAAACCCGCGAAACCCGAATA
1 A-ACCCGAAACCCGAAACCCGAAACCCG---AACCCGAAA-ACCGAAAACC-CGAAACCCGAA-A
** * **
1157421 CCCGGGA---AAACCC-GAAACCCGGAAA-CTCCGCAGCACCCGCTAACCCGA
59 CCCGAAACCGAAACCCGGAAACCC-GAAACCT-CG-A-AACCCGAAAACCCGA
* * *
1157469 AACCCGAAACCCGGAAACCCGAACCCCGAAACCCGAAACCCGGAAACCCGTAAACCCGAAACCCG
1 AACCCGAAACCC-GAAACCCGAAACCCG-AACCCGAAAACCGAAAACCCG-AAACCCGAAACCCG
* * * *
1157534 AACCCGAAACCC-GAAACCGCGAATCC-CGAAA-CCGAATACCTGA
63 AAACCGAAACCCGGAAACC-CGAAACCTCGAAACCCGAAAACCCGA
* * * *
1157577 AACCCTGTAAAAACCTCGAAACACCCGAACCCCGATAACACGAAACCCGAAAACCCGCAACCCGA
1 AACCC-G---AAACC-CG-AA-ACCCGAAACCCG--AACCCGAAAACCGAAAACCCGAAACCCGA
** *
1157642 AACCCGAAACCCCGAAACCCTAGGAAACAGGAAAACC-CTGAAACCCGAAAAACGCGAATA
57 AACCCGAAA--CCGAAACCC--GGAAACCCG-AAACCTC-GAAACCCG-AAAACCCG---A
* *
1157702 AACCCTGAAACCCGATAACTCTGAAAATCCGAAACCCTGAAAACCG-AAACCCGAAACCCGAAAC
1 AACCC-GAAACCCGA-AAC-CCG-AAACCCG-AACCC-GAAAACCGAAAACCCGAAACCCGAAAC
* *
1157766 CCGGAAACCCGTAAACCTCGGGAAACCCGAAACCCGACGAAATCCCGAAATTCCCGA
60 CC-GAAA-CCG-AAACC-C-GGAAACCCGAAA-CC-TCGAAA-CCCGAAA-ACCCGA
1157823 AACTCCGAAACTCCTGAAAACCCGATATAATCCTCGAAACCCGGAAAACCCG-AAACCCGTGAAA
1 AAC-CCGAAAC-CC-G-AAACCCG--A-AA-CC-CG-AACCC-GAAAA-CCGAAAACCC--GAAA
* * *
1157887 CCTCGAAACCCGCAACCGAACCCGAACCCGAAAACCCGCAACC-CGAAACCCG-AAACCCGGGA
52 CC-CGAAACCCGAAACCG-A----AACCCGGAAACCCGAAACCTCGAAACCCGAAAACCC--GA
* * *
1157949 AACCGCGATTACCCGGAAATACTCCAGAAACCCCGAACCCGAAACCCGAAAACCTCGGAACCCGA
1 AACC-CGA-AACCC-G-AA-AC-CC-GAAA-CCCGAACCCGAAAACCGAAAACC-CGAAACCCGA
* * *
1158014 AACACGGAACCCCGAAAACCC-GAAACCGGAAAAACC-CGAAACCCGAAAACCCCGA
57 AAC-CCGAA-ACCG-AAACCCGGAAACCCG--AAACCTCGAAACCCGAAAA-CCCGA
* ***
1158069 AACCCGAAA-CCGAAACCCCGCATATAACCCGAACCTGCGAAACCCGGAAAACCCGTAATA-TAT
1 AACCCGAAACCCGAAA-CCCG---A-AACCCGAACC--CGAAAACC-GAAAACCCG-AA-ACCCG
** *
1158132 ATCCCTCGGAAAACTCGAAAACCC-GAAAGCCCTGAAAACTCCCTGAAACCCTG-AAACCCGA
56 AAACC-C-G-AAAC-CG-AAACCCGGAAA-CCC-G-AAAC-CTC-GAAACCC-GAAAACCCGA
* * *
1158193 AA-CCGAAAACCCGAAACCCTGGGAAACCCGAACCCGAAACCTCGGAAACCCTTAGAACCCTGAA
1 AACCCG-AAACCCGAAACCC---GAAACCCGAACCCGAAAAC-CGAAAACCC-GA-AACCC-G-A
* *
1158257 AACCCGAAACCCGGAAACCCGGAAAACCCGATGGAAACC-CGAAACTCTCGGACACCCGA
57 AACCCGAAA-CC-GAAACCCGG-AAACCC----GAAACCTCGAAAC-C-CGAAAACCCGA
* * * * *
1158316 AACCCGCAA-CCG-AACCTGAAACCCTAAACCG-AAACCGAAAACCCGGAAACCCGGAACCCCTG
1 AACCCGAAACCCGAAACCCGAAACCCGAACCCGAAAACCGAAAACCC-GAAACCC-GAAACCC-G
* *
1158378 AAACCCGAATAACTCC-GAAACCCGAATACC-CGGGTAAACCCGGAACCCCGCA
63 AAA-CCG-A-AAC-CCGGAAACCCGAA-ACCTC--G-AAACCCGAAAACCCG-A
* * * * * **
1158430 TACCCGATTATACCCGGAACCC-AAACCCGAAACCCGAAACCCGATAATACCATG-GA-GGGAAA
1 AACCCGA--A-ACCCGAAACCCGAAACCCG-AACCCGAAAACCGA-AA-ACC-CGAAACCCGAAA
* * **
1158492 CCCGAAACCGAGAAACCGTCAAACCCGCTACCT-----CCCG-AAACCGCGA
59 CCCGAAACCGA-AACCCG-GAAACCCGAAACCTCGAAACCCGAAAACC-CGA
*** * *
1158538 AACCCGCAAA-AAAAAACCCGTAAACCCGAAACCCTAAACCCGATAAACCCGAAACCCGAAA-CC
1 AACCCG-AAACCCGAAACCCG-AAACCCG-AACCCGAAAACCGA-AAACCCGAAACCCGAAACCC
* * *
1158601 GAAACCTCGAAACCCCGGCAAACCC-AAAAC-CGAAACCAG-AAACCAGA
62 GAAA-C-CGAAA-CCCGG-AAACCCGAAACCTCGAAACCCGAAAACCCGA
* * * *
1158648 AACTCTCGGAACCCCGAAACCCGAATACACGAAACGCCGGAAACCCGATAACCCGAAACCCGAAA
1 AAC-C-C-GAAACCCGAAACCCGAA-ACCCG-AAC-CC-GAAAACCGAAAACCCGAAACCCGAAA
** *
1158713 CCCTGAAACCCGAAA-CC-GAAACCCGAAACCGAGAGGAAACCGAAAACCCGA
59 CCC-GAAA-CCGAAACCCGGAAACCCGAAACCTCGA--AACCCGAAAACCCGA
* * *
1158764 AACCCCGAAACCCGAAAACCG-AACCCGAAACCCTAAAACCCG-AAACCCGTACAACCCTAAAAC
1 AA-CCCGAAACCCGAAACCCGAAACCCG-AACCCGAAAA-CCGAAAACCCG-A-AACCC-GAAAC
* * *
1158827 CCGTAA---AAACCCGTAAACCCGAAACC-CG-CA-CCG-AAACCCGA
60 CCGAAACCGAAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* * * *
1158868 AA-CCGAAACCCGGATAACCC-TAACCCGAAACCGAAACCCG--AACCCG-AACCCGAAACACGA
1 AACCCGAAACCC-GA-AACCCGAAACCCGAACCCGAAAACCGAAAACCCGAAACCCGAAACCCGA
* *
1158928 ACCCGGAAACCCCG-AACCCTGAAACC-CGAAACCCGAAAACCCGA
64 AACC-GAAACCCGGAAACCC-GAAACCTCGAAACCCGAAAACCCGA
* * *
1158972 AACCCGAAACCTCGCAAATCCGGAAACCCGAAACCCCAGGAAACCCTGATAACTCCGAAACCCGA
1 AACCCGAAACC-CG-AAA-CCCGAAACCCG-AA-CCC--GAAAACC-GAAAAC-CCGAAACCCGA
*
1159037 AACTCCGAAACCCTGAAAACCC-GAAACCCGAAACC-CG-AACCCGAATACTCCGA
57 AAC-CCGAAA-CC-G-AAACCCGGAAACCCGAAACCTCGAAACCCGAAAAC-CCGA
* *
1159090 AACCCGAAATCCCGAAAACCTCGAAACCCGAAGACCCGAACCGAAACCTGAAAGCCCGCAATCCC
1 AACCCGAAA-CCCG-AAACC-CGAAACCCG-A-ACCCG-A---AAACC-GAAAACCCG-AAACCC
*
1159155 GATAACCCTATAATCCCGAGTAA-CCGGATAAACCCGAGAACC-CGAAACCCGGAAAATCCCGA
55 GA-AACCCGA-AA--CCGA--AACCCGG--AAACCCGA-AACCTCGAAACCC-GAAAA-CCCGA
1159217 AACCCGAAACCCGGAAACTACCGATAAACCCGAAACCCGAAAACCCGAAAATCCCGAAACTCTCG
1 AACCCGAAACCC-GAAAC--CCG--AAACCCG-AACCCGAAAA-CCGAAAA-CCCGAAAC-C-C-
1159282 GGAAAACCCGCGAAACCCGAATACCC-G-AA-CCG-AACCTCCGAAATCCCGAAAACCCGA
55 -G-AAA-CC-CGAAA-CCGAA-ACCCGGAAACCCGAAACCT-CGAAA-CCCGAAAACCCGA
* * *
1159339 AACCTCGAAACCCGAATACTCC-AATTCTC-AA-CCGAAACCCCG-AAACCCGAAACCCGCAAAC
1 AACC-CGAAACCCGAA-AC-CCGAA-ACCCGAACCCGAAA-ACCGAAAACCCGAAACCCG-AAAC
* * *
1159400 CTGAAACCCGAAACCCCGAATACTCCGTAATACC-CGAATACCCGGATAACCCGAA
60 CCGAAA-CCGAAACCCGGAA-AC-CCG-AA-ACCTCGAA-ACCC-GAAAACCCG-A
* * **
1159455 AACCGGAAACTCCGAAAGACCGAAACCCGAAACCCCGAAAAACACGCGAACCCTGGAAACTCCGA
1 AACCCGAAAC-CCGAAA-CCCGAAACCCG-AA-CCCG-AAAAC-CGAAAACCC--GAAAC-CCGA
*
1159520 AACCCGAAACTCCGAAAGAAACC-GAAATCCCGAAACC-CAAGAAATACCCG-AAACCCTGGCA
57 AACCCGAAA--CCG--A-AACCCGGAAA-CCCGAAACCTC--G-AA-ACCCGAAAACCC--G-A
* *
1159581 AACCCGAAACCCGAACACCCGAAACCCGATAACCCG-AACCCGAATA-CCGAAATCCCGAAACCC
1 AACCCGAAACCCGAA-ACCCGAAACCCG--AACCCGAAAACCGAAAACCCGAAA-CCCGAAACCC
* ** * *
1159644 GCAAACTCCGTAAACCCGAAATGACTCCGGGACCCCG-AACCCGTGAACACCC-A
62 G-AAA--CCG-AAACCCGGAA--AC-CCGAAACCTCGAAACCC--GAAAACCCGA
*
1159697 AACCCGAAACCCGGAAACCCGAAACCTCGAAACCCGAAACCCG-AAACCCGTAAACCCGAATACC
1 AACCCGAAACCC-GAAACCCGAAACC-CG-AACCCGAAAACCGAAAACCCG-AAACCCGAA-ACC
1159761 CGAAACACGAAA-CCGGAATAACCCG-AACC-CGAAACTCCGAAAAACCCG-
61 CGAAAC-CGAAACCCGG-A-AACCCGAAACCTCGAAAC-CCG-AAAACCCGA
** *
1159809 -ACCCGGAAATCCCGAATACCCG--ACCCG---TGGAAAACCCGAAACCCCGAAACCCGATGTAA
1 AACCC-GAAA-CCCGAA-ACCCGAAACCCGAACCCGAAAA-CCGAAAACCCGAAACCC---G-AA
1159868 ACCC-AAACCGAAAACCC-GAAACCCGAAACC-CGAAACCCGATAAACCCGA
58 ACCCGAAACCG-AAACCCGGAAACCCGAAACCTCGAAACCCGA-AAACCCGA
* * * *
1159917 AAACCGCAACCCGCAACCCGAAACCCGGAAAACCCG-CAACCG-AAACCCGGAGTAACCCGAAAC
1 AACCCGAAACCCGAAACCCGAAACCC-G--AACCCGAAAACCGAAAACCC-GA--AACCCGAAAC
* * *
1159980 CAGAAACCCG-AA-CC-GAAACCTGAAACC-CGAAACCCG-AATCCCGA
60 CCGAAA-CCGAAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* * * *
1160024 AACCCGCAACCCTAACCTCCGAAACCCGAAACCCGAAACCCGATTAAACCCGAAACCCGGAAACC
1 AACCCGAAACCCGAAAC-CCGAAACCCG-AACCCGAAAACCGA--AAACCCGAAACCC-GAAACC
**
1160089 CG-AA---AAACCCGTGAAAACCCGAAACC-CGTAAACCCGCGAACCCGA
61 CGAAACCGAAACCCG-G-AAACCCGAAACCTCG-AAACCCGAAAACCCGA
** * * * *
1160134 AACCCGTAATACTCCGCCACCCTGGACACCCCTTTGAACCCGAAACCCGCAAACCCGAAACCCTT
1 AACCCG-AA-AC-CCGAAACCC--GA-AACCC---GAACCCGAAAACCGAAAACCCGAAACCC-G
** * * *
1160199 AAACCCGAAACCCGAAACCTCTTAAACCCGAAAGC-CGACACCCGATTAATCCCGA
56 AAACCCGAAA-CCGAAACC-CGGAAACCCGAAACCTCGAAACCCGA--AAACCCGA
* *
1160254 AA-CCGAAACCCGAAACCCGGAAA--CGAAACCCGAAACCCGAAGAAACCGGAAATCCCGGAAAA
1 AACCCGAAACCCGAAACCC-GAAACCCG-AACCCGAAAACCG-A-AAACCCGAAA-CCC-G-AAA
* * *
1160316 CCAGAACCCCGAAACCCGGAATACCTCGAAAAGCCTCGAAACCCGGAAACCCG-
59 CCCGAA-ACCGAAACCCGGAA-ACC-CG-AAA-CCTCGAAACCCGAAAACCCGA
* *
1160369 AACCCGAAAACTCCGAAA-CCGAAA-CCGAAACCCGAAACCCCTAAAACCCGAAACCCGAAACCC
1 AACCCG-AAAC-CCGAAACCCGAAACCCG-AACCCGAAA-ACCGAAAACCCGAAACCCGAAACCC
** * *
1160432 GAAACCCTGTAAATAC-GAAACCGGATGAACC-CGAGAACCCG-AAACCTGGGGA
62 GAAA-CC-G-AAACCCGGAAACCCGA--AACCTCGA-AACCCGAAAACC---CGA
* *
1160484 AACCCGATAA-CCGAAACCCGAAACCCGAACCCGAAACCCG-AATCCCGAAA-CCGAAA-CCGAA
1 AACCCGA-AACCCGAAACCCGAAACCCGAACCCGAAAACCGAAAACCCGAAACCCGAAACCCGAA
* * *
1160545 ACCGAAACCC-GAAACCCCGATAACC-CGGAATCCAGTAAATTCCCCGGAA
65 ACCGAAACCCGGAAA-CCCGA-AACCTC-GAAACCCG-AAA--ACCC-G-A
* * *
1160594 AACCCGGAAAACCCGAAACCTCGAAACCCAAACCCTCAAACCCGAGAAACCCGAAA-CCGAAACC
1 AACCC-G-AAACCCGAAACC-CGAAACCCGAACCC-GAAAACCGA-AAACCCGAAACCCGAAACC
* *
1160658 CGAAACCCGATAACCCGGAAACCCCGAAACC-GGACAACCCGAGAACCCGA
61 CGAAA-CCGA-AACCCGGAAA-CCCGAAACCTCGA-AACCCGAAAACCCGA
* * *
1160708 TCAACCCGAAACCCGAAAACC-AAACCCGATAACTCCGAAACCCGATAACCCGAAACCCGAAAAC
1 --AACCCGAAACCCGAAACCCGAAACCCG--AAC-CCGAAAACCGAAAACCCGAAACCCG-AAAC
* * *
1160772 CCGAATACCCGGGGAAACCCCGAAACCTCGAAACC-CGAAACTCGAATACCGTCGA
60 CCGAA-A-CC---GAAACCCGGAAACC-CGAAACCTCGAAACCCGAAAACC--CGA
* * * *
1160827 AACCCGTAAACCAGATAACCCGAAACCCGAA--C-AAACCCG-TACCCCGGGAAACCCTGAAACC
1 AACCCG-AAACCCGA-AACCCGAAACCCGAACCCGAAAACCGAAAACCC--GAAACCC-GAAACC
* *
1160888 TTCGAAAACTCCGGATAAACCCGTAAAAACCCGGGATAAACC-CGATA-CCGATTTAAACCCG-
61 --CG-AAA--CC-G--AAACCCG--GAAACCC--G--AAACCTCGAAACCCGA---AAACCCGA
*
1160949 AACCCGAAAACCCTGAAGA---GAAACCTCGAACCTCAGAAACTCCG-AAACCCGAAACCCGAAA
1 AACCCG-AAACCC-GAA-ACCCGAAACC-CGAACC-C-GAAA-ACCGAAAACCCGAAACCCG-AA
* * *
1161010 ACCCGAACCCTAAACCTC--AAACCCGAAACC-CGAAACCCGGAAA-CCGA
58 ACCCGAAACCGAAACC-CGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* * *
1161057 CAATCCCGAAACCCGAAAAACCCGAAATAAACTCGAAAACCCG-AACCCGATAACCCGAAACCCG
1 -AA-CCCGAAACCCG--AAACCCG----AAACCCG--AACCCGAAAACCGAAAACCCGAAACCCG
*
1161121 AAACCCGAAAACCCGACTGAAACACC-GACACTCCGAAACC-CGAAACCCGAAAACCCGA
56 AAACCCG-AAA--C--C-GAAAC-CCGGAAAC-CCGAAACCTCGAAACCCGAAAACCCGA
* *
1161179 ATACCCGACAACCTGAAACCCGAAAACCCGAACCCGAAACCCG-AAACCCGAAACCCGAAAACCC
1 A-ACCCGA-AACCCGAAACCCG-AAACCCGAACCCGAAAACCGAAAACCCGAAACCCG-AAACCC
1161243 GAAACCCGAAACCC-G-AA--CGAAACC-CGAAACCCCG-AAACCCGA
62 GAAA-CCGAAACCCGGAAACCCGAAACCTCGAAA-CCCGAAAACCCGA
* *
1161285 AACCCGAACACCCGAAATCCGATAACCCGAAATCCTGAGAAACCCGCGGAAATACCCTAGAAAAC
1 AACCCGAA-ACCCGAAACCCGA-AACCCG-AA-CCCGA-AAA--C-C-GAAA-ACCC--G-AAAC
*
1161350 CCGAAACCCGAAACGCTGAAACCC-GACACCCG-AA-C-CGATAACCCGAAAACCCGA
53 CCGAAACCCGAAAC-C-GAAACCCGGAAACCCGAAACCTCGA-AACCCGAAAACCCGA
* * *
1161404 AACCCGAGAAACCCGATAACCCGAAAACCCGAAACCCGAAACCCG-AAACCCGATAAACCGAACC
1 AACCC--GAAACCCGA-AACCCG-AAACCCG-AACCCGAAAACCGAAAACCCGA-AACCCGAAAC
* *
1161468 CCGAAACCCGAAACCC-GAAACCAG-AACACTCGAAACCCGGAAACCCGA
60 CCGAAA-CCGAAACCCGGAAACCCGAAAC-CTCGAAACCCGAAAACCCGA
*
1161516 AA-CCGAAACCCGAATACCCGTAAAACCCGAAAAATGCCCGAAACCCG-AAA-CCGAAA-CCGAA
1 AACCCGAAACCCGAA-ACCCG--AAACCCG---AA--CCCGAAAACCGAAAACCCGAAACCCGAA
* *
1161577 ACCCGAAACCCGAAACCC-GAAACCCCGAGACC-CTAAACCCCGAAAACCTCGGAGA
58 ACCCGAAA-CCGAAACCCGGAAA-CCCGAAACCTCGAAA-CCCGAAAACC-C---GA
*
1161632 AACCCGAAACCGGAAACCCGAAACCCGAAACCCGAAACCCAAACCGAGAATGCACCCGAAACCCG
1 AACCCGAAACCCGAAACCCGAAACCCG-AACCCG--A---AAACCGA-AA---ACCCGAAACCCG
*
1161697 AAACCCGAGAACCCGAAACCCGAAAACCCGGGAAAACC-CGAAACCCG-AAACCCGA
56 AAACCCGA-AA-CCGAAACCCGGAAACCC--G-AAACCTCGAAACCCGAAAACCCGA
1161752 GAA-CCGAAATCCTCGAAACCCGAAATCCTCGACAACCCG-AAACCG--AACCCGAAACCCGGAA
1 -AACCCGAAA-CC-CGAAACCCGAAA-CC-CG--AACCCGAAAACCGAAAACCCGAAACCC-GAA
* * *
1161813 ACCCGGAAACCCGAAATCCCGAAAACCCGAACGAAACCGCGAAACCCGACAACCCCGGAA
58 ACCC-GAAA-CCGAAA-CCCGGAAA-CC---CGAAACCTCGAAACCCGA-AAACCC-G-A
*
1161873 AACCCGAAACCCG-AACACC-AAACCCGTGAACCCGAAAACCG-AAACCCGAAA-CCGAAATCCG
1 AACCCGAAACCCGAAAC-CCGAAACCC--GAACCCGAAAACCGAAAACCCGAAACCCGAAACCCG
* *
1161934 AAACCCCCGCATACCCCGAAACCCGAAACC-CGAAACCCG-AAACCCGAA
63 AAA---CCG-AAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCG-A
*
1161982 AACCCGAAACCCCGAACCCCGAAACTCCGATAACCCGGAAAACCTATGGTCACCCCCTGAAAACC
1 AACCCGAAA-CCCGAAACCCGAAAC-CCG--AACCC-G--AA---A-----A---CC-GAAAACC
* *
1162047 CGTAAACTCGTAAACCCG-AACCGAAAACCCGAAAACCCGAAACC-CGAAACCCG-AAACCCTGA
47 CG-AAACCCG-AAACCCGAAACCG-AAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCC-GA
* * *
1162109 AACCCGAAACCCGAAACCCGATAACCCTAACCCGTAAACCCGAAAACCCGACACCCGAAACCCGA
1 AACCCGAAACCCGAAACCCGA-AACCCGAACCCG-AAAACCGAAAACCCGAAACCCGAAACCCGA
* *
1162174 ACCCGAAACCC-GAACCCCGAAACC-CGAGAA-CCGAAAACCCCGA
64 AACCGAAACCCGGAAACCCGAAACCTCGA-AACCCGAAAA-CCCGA
*
1162217 ATACCC--AACCCTGATCAAACCCGAAACCCGAAACCCGAAACCTCG-AAACCCGGAAACCCGAA
1 A-ACCCGAAACCC-G---AAACCCGAAACCCG-AACCCGAAAAC-CGAAAACCC-GAAACCCGAA
* *
1162279 ACCCGAACTCCGATACCC-GAACACCCGAAA-C-CGAAACCC-AAAACCCGCGA
58 ACCCGAA-ACCGAAACCCGGAA-ACCCGAAACCTCGAAACCCGAAAA-CC-CGA
1162329 AACCCGAAAACCCGTAAACCCG-AACTCCTGAAACCCGAAAACCTCG-AAACCCGAAACCCGAAA
1 AACCCG-AAACCCG-AAACCCGAAAC-CC-G-AACCCGAAAA-C-CGAAAACCCGAAACCCG-AA
*
1162392 ACCCGTAAAACCCGAGAACCAGGGAAACCCGAAACC-CGAAACCCG-AAA-CCGA
58 ACCCG--AAA-CCGA-AACC-CGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* *
1162444 AACCCGAAACCCGAAACCCGAAACCCGAAACCCGAAACCCGAGTAACCCCTGAAACCTCGAAATC
1 AACCCGAAACCCGAAACCCGAAACCCG-AACCCGAAAACCGA--AAACCC-GAAACC-CGAAA-C
1162509 CCGAAACCCCGTGAATACTCCGGAAACCCGAACACC-CGAAACCCG-AAACCCGA
60 CCGAAA--CC--GAA-AC-CCGGAAACCCGAA-ACCTCGAAACCCGAAAACCCGA
* * *
1162562 AACCCGAATACCGGAAAACCCGAAAACCCGAAACCCCGAAACCCG-GAACCCGAAACCCGAAACC
1 AACCCGAA-ACCCG-AAACCCG-AAACCCG-AA-CCCGAAAACCGAAAACCCGAAACCCGAAACC
* * *
1162626 CGAAAACCGAAACCC-GAATACCCTGCAACC-CGCTAACCCG-AATCCCTGAGA
61 CG-AAACCGAAACCCGGAA-ACCC-GAAACCTCG-AAACCCGAAAACCC---GA
* * * * * *
1162677 AACCTAGAAACCCGAAAACCG-CACCTCAAACCCG-AAACCGGAAA-CCGAAACTCTCGTAAAAA
1 AACC-CGAAACCCGAAACCCGAAACC-CGAACCCGAAAACCGAAAACCCGAAAC-C-CG--AAAC
*
1162739 CCGAAA--AAAACCC-GAAACCCGAAAACC-CGAAACCCGAAAACCCGA
60 CCGAAACCGAAACCCGGAAACCCG-AAACCTCGAAACCCGAAAACCCGA
* * * *** * *
1162784 AACACGAAATACCCGGAAACCCTAAACCCGAAACCGACCCCCGTAAACCGTTCGAAACCCTAAAC
1 AACCCG-AA-ACCC-GAAACCCGAAACCCGAACCCGAAAACCGAAAACC---CGAAACCCGAAAC
* * *
1162849 CCGAACCCCGAAACCCGGAAACCTGAAATACTCCGAAACCCGAAAACCCGA
60 CCGAA-ACCGAAACCCGGAAACCCGAAA-CCT-CGAAACCCGAAAACCCGA
*
1162900 AACCCGGTAAAACCCGAGATACCCGGAACCCGGAAACTCCCTGGAAAACCCGAAAACCCCGAAA-
1 AACCC-G--AAACCCGA-A-ACCCGAAACCC-G-AA--CCC--GAAAA-CCGAAAA-CCCGAAAC
*
1162964 CCGAAACCCGAACCCGCAAACCC-GAAACCCGAAACC-CGAAACCCG-AAA-CCGCA
53 CCGAAACCCGAAACCG-AAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCG-A
* * *
1163017 AACCCGAGAAATCCCCGGAAACCCGGAAACGACTACCGCGCGGAAAACCCG-AAACCCGAAAACC
1 AACCC--GAAA--CCC-GAAACCC-GAAAC-CCGAAC-C-C-GAAAA-CCGAAAACCCG-AAACC
* * * *
1163081 CGAAACCCGGAAACCGGAACCCCGAAACCCGATAACC-CGGACCCCG-AAACCCGA
54 CGAAACCC-GAAACCGAAACCCGGAAACCCGA-AACCTCGAAACCCGAAAACCCGA
* * * *
1163135 AACCCCGAAAATCCCGAAATCTGAAACCCGAAATCCC-AAACCCGAATACCCGTAAACTCCGAAA
1 AA-CCCG-AAA-CCCGAAACCCGAAACCCG-AA-CCCGAAAACCGAAAACCCG-AAAC-CCGAAA
* * *
1163199 CCCGAAACCCGAAACCCGAAATCATCCCGAAATCCCCGTACCACCCG-AAACCCGGA
59 CCCGAAA-CCGAAACCCGGAA--A-CCCGAAA-CCTCG-A-AACCCGAAAACCC-GA
* *
1163255 TACCCCGAAACCCGAAACCCGAAACCCGAAACCCG-AAACCGAAAGCCCG-AA-CCGTAAACCCG
1 -AACCCGAAACCCGAAACCCGAAACCCG-AACCCGAAAACCGAAAACCCGAAACCCG-AAACCCG
*
1163317 AAACCCGACATACCCGAGGAAA-CCGAAAACCCCGAAACCTCCCG-AAACCCGA
63 AAA-CCGA-A-ACCC--GGAAACCCG-AAACCTCGAAA---CCCGAAAACCCGA
* * * *
1163369 TAA-TCGAAAAACCCGAAACCCGAAAACCCGAAACCCGAAACCCG-AACCCCGAAACCCAAAACC
1 -AACCCG--AAACCCGAAACCCG-AAACCCG-AACCCGAAAACCGAAAACCCGAAACCCGAAACC
* * *
1163432 CGAGA---AAACCC-G-AACCCGGAAACC-CTAAACCCG--CACCCGA
61 CGAAACCGAAACCCGGAAACCC-GAAACCTCGAAACCCGAAAACCCGA
*
1163472 AACCCGGAAACCCGAAACCCGAAACCCGAAACCGAAAACTCCG-AAA-CCGAAACCCGAAACCCG
1 AACCC-GAAACCCGAAACCCGAAACCCGAACCCGAAAA--CCGAAAACCCGAAACCCGAAACCCG
* *
1163535 AAACCCGAAACCCGAAAACCCGTAAGAGCC-CTAAA-CCGACAAACCCGA
63 AAA-CCGAAACCCGGAAACCCG-AA-A-CCTCGAAACCCGA-AAACCCGA
* **
1163583 AACCCGATAACCCGAAACCCGATAACCCGAAAACCCGAAACCCGATCACCCGAAACCCGAAACCC
1 AACCCGA-AACCCGAAACCCGA-AACCCG--AACCCGAAAACCGAAAACCCGAAACCCGAAA-CC
* *
1163648 CGAACCCGGAAACCC-GAAACTCCGAAATCC-CCAAACCCG-AAACCCGA
61 CGAAACC-GAAACCCGGAAAC-CCGAAA-CCTCGAAACCCGAAAACCCGA
* * * *
1163695 AAACCGTGAA---GAAACCCGAAACCCGAAATCCCGAAACCCGGAAACCCGAAACCCGAAACCCG
1 AACCCG-AAACCCGAAACCCGAAACCCG-AA-CCCGAAAACCGAAAACCCGAAACCCGAAACCCG
* **
1163757 AAATCCCGAAAACCTTAAACCCG-AA-CTCCG-AACCCG-AAACCCGA
63 AAA--CCGAAACCCGGAAACCCGAAACCT-CGAAACCCGAAAACCCGA
*
1163801 AACCCGCAACCCCGAAACCCGAAACCCGAAACCCGCAAAACCCG-AAACCCG-AACCCGACAAAC
1 AACCCG-AAACCCGAAACCCGAAACCCG-AACCCG-AAAA-CCGAAAACCCGAAACCCG--AAAC
** * * * *
1163864 CCGAAACCCCGGAAACCCCTAACCCCGAACCCTCGAACCCCG-AACCCCGA
60 CCGAAA--CC-GAAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* * ** * *
1163914 ACCCCCGAAACCCGAAACCCGAAACCCGAAACCGAACCCCG-AACCCCTAAACCCGAAACCCGAA
1 A-ACCCGAAACCCGAAACCCGAAACCCGAACCCGAAAACCGAAAACCCGAAACCCGAAACCCGAA
** * *
1163978 ACCCGAAACCCTTAAA-CGGAAATCC-AGAAA-CCGAAAACCCGAA
65 A-CCGAAACCCGGAAACCCGAAA-CCTCGAAACCCGAAAACCCG-A
* * * * *
1164021 AACACG-AACACGAAACCCTGAAAACCCTAAAACACGAAAACCG-AAACCGGAAAACCCGAAACC
1 AACCCGAAACCCGAAACCC-G-AAACCC--GAACCCGAAAACCGAAAACCCG-AAACCCGAAACC
* * * * ** *
1164084 AGTAAAACCCCTAAACCTCGAAAAACCG-AACC-CGAAACAAGAAAACTCGA
61 CG--AAA--CCGAAACC-CGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* * * * * * * *
1164134 AACACGACA-CCTAAACGCCTACA-CCGAAAACCCGAAATCC-TAAACCCGGAACCCGAAAACCC
1 AACCCGAAACCCGAAAC-CCGAAACCCG--AACCCGAAAACCGAAAACCCGAAACCCG-AAACCC
** * *
1164196 GAAACCCG-AACCC-GAAACCTTAAACC-AGATACCCG-AAACCCGA
62 GAAA-CCGAAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
* *
1164239 AACCCTGATAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCCGAAAACCCGATAAACCGAAA
1 AACCC-G---AAACCCGAAACCCGAAACCC-G-AACCCGAAAACCGAAAACCCGA-AACCCGAAA
* ** * *
1164304 -CCTAAACCCGAAA-CCATAAATCCGAAAACCT--AAACACCGAACAA-CAG-
59 CCCGAAA-CCGAAACCCGGAAACCCG-AAACCTCGAAAC-CCGAA-AACCCGA
* ** * *
1164351 AACCCGAAAAACCCGAAACACAGAAA-CCGAACCATAAAACCTG-AAACCCTAAACCCTAAACCC
1 AACCCG--AAACCCGAAAC-CCGAAACCCGAACCCGAAAACC-GAAAACCCGAAACCCGAAACCC
1164414 GAAACC
62 GAAACC
1164420 CCTAAAACCC
Statistics
Matches: 7678, Mismatches: 837, Indels: 2380
0.70 0.08 0.22
Matches are distributed among these distances:
97 7 0.00
98 5 0.00
100 13 0.00
101 45 0.01
102 34 0.00
103 35 0.00
104 61 0.01
105 114 0.01
106 141 0.02
107 292 0.04
108 337 0.04
109 334 0.04
110 399 0.05
111 442 0.06
112 481 0.06
113 469 0.06
114 538 0.07
115 509 0.07
116 565 0.07
117 459 0.06
118 410 0.05
119 343 0.04
120 277 0.04
121 304 0.04
122 267 0.03
123 210 0.03
124 136 0.02
125 110 0.01
126 116 0.02
127 113 0.01
128 43 0.01
129 34 0.00
130 24 0.00
131 7 0.00
132 4 0.00
ACGTcount: A:0.40, C:0.39, G:0.15, T:0.06
Consensus pattern (107 bp):
AACCCGAAACCCGAAACCCGAAACCCGAACCCGAAAACCGAAAACCCGAAACCCGAAACCCGAAA
CCGAAACCCGGAAACCCGAAACCTCGAAACCCGAAAACCCGA
Found at i:1155723 original size:18 final size:17
Alignment explanation
Indices: 1155704--1155792 Score: 82
Period size: 16 Copynumber: 5.5 Consensus size: 17
1155694 ACCCGAGGGA
*
1155704 AAAACCCGGCAAACCCG
1 AAAACCCGGAAAACCCG
*
1155721 AAAACCC-GTAAACCCG
1 AAAACCCGGAAAACCCG
*
1155737 AAAACCCTGAAAATCCCG
1 AAAACCCGGAAAA-CCCG
*
1155755 AAAACCCGGGGAAACCCG
1 AAAACCC-GGAAAACCCG
1155773 --AACCC-G-AAACCCG
1 AAAACCCGGAAAACCCG
1155786 -AAACCCG
1 AAAACCCG
1155793 AAACCGATAA
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
13 7 0.11
14 6 0.10
16 20 0.32
17 11 0.17
18 15 0.24
19 4 0.06
ACGTcount: A:0.42, C:0.38, G:0.17, T:0.03
Consensus pattern (17 bp):
AAAACCCGGAAAACCCG
Found at i:1155896 original size:6 final size:7
Alignment explanation
Indices: 1154605--1165703 Score: 5392
Period size: 7 Copynumber: 1461.0 Consensus size: 7
1154595 AGGAGAGACA
1154605 GAAACCC
1 GAAACCC
1154612 G-AA-CC
1 GAAACCC
*
1154617 GAAACCG
1 GAAACCC
1154624 GAAACCC
1 GAAACCC
1154631 GAAAACCC
1 G-AAACCC
1154639 GAAA-CC
1 GAAACCC
1154645 GAAACCC
1 GAAACCC
1154652 GAAACCC
1 GAAACCC
1154659 G-AACTCC
1 GAAAC-CC
1154666 GAAACTCC
1 GAAAC-CC
*
1154674 GACACCC
1 GAAACCC
1154681 TGAAACTCC
1 -GAAAC-CC
*
1154690 GAACCCC
1 GAAACCC
1154697 GAAACCTC
1 GAAACC-C
1154705 GTAAACCCC
1 G-AAA-CCC
*
1154714 GACACCC
1 GAAACCC
1154721 GTAAA-CC
1 G-AAACCC
*
1154728 GAAAACC
1 GAAACCC
*
1154735 GCAACCC
1 GAAACCC
**
1154742 -AGCCCCC
1 GA-AACCC
1154749 GAGAACCC
1 GA-AACCC
1154757 GCAAACCC
1 G-AAACCC
1154765 GAAACTCC
1 GAAAC-CC
1154773 GAAACCC
1 GAAACCC
1154780 GAAACCC
1 GAAACCC
*
1154787 TGGAAACAC
1 --GAAACCC
*
1154796 GTAACCC
1 GAAACCC
1154803 GAAA--C
1 GAAACCC
1154808 GAAACCC
1 GAAACCC
1154815 GGAAAAACCC
1 -G--AAACCC
1154825 TGAAAACCCC
1 -G-AAA-CCC
1154835 GAAACCCC
1 GAAA-CCC
1154843 GAAACCC
1 GAAACCC
1154850 GAAACCC
1 GAAACCC
1154857 GAAACCC
1 GAAACCC
1154864 GAAACCC
1 GAAACCC
1154871 G-AACCC
1 GAAACCC
1154877 GAAACCC
1 GAAACCC
1154884 GGAGAAATACCC
1 ---G-AA-ACCC
1154896 GAAACCC
1 GAAACCC
1154903 GGGAAACCC
1 --GAAACCC
1154912 GAAACCC
1 GAAACCC
*
1154919 GGAACCCC
1 -GAAACCC
1154927 GAAACCC
1 GAAACCC
1154934 GGAAACCC
1 -GAAACCC
1154942 GAAACCC
1 GAAACCC
1154949 GAAA-CC
1 GAAACCC
1154955 GACAACCC
1 GA-AACCC
*
1154963 GCCACACCC
1 G--AAACCC
1154972 GAAAAACCCC
1 G--AAA-CCC
*
1154982 GAATCCGCC
1 GAA-AC-CC
1154991 GAAACCTC
1 GAAACC-C
1154999 GAAAACCC
1 G-AAACCC
1155007 GAAACCC
1 GAAACCC
1155014 TGAAATCTCC
1 -GAAA-C-CC
*
1155024 AAAATTCCC
1 GAAA--CCC
1155033 GGAAAACCC
1 -G-AAACCC
1155042 GACAACCTC
1 GA-AACC-C
1155051 GAAACCC
1 GAAACCC
*
1155058 GAATAAACAC
1 G---AAACCC
1155068 GAAACCTCC
1 GAAA-C-CC
1155077 GAAACCC
1 GAAACCC
1155084 GAAACCC
1 GAAACCC
1155091 GAATACCC
1 GAA-ACCC
1155099 TTG-AACCC
1 --GAAACCC
* *
1155107 TTAAAACC
1 -GAAACCC
1155115 GAAAACCC
1 G-AAACCC
1155123 GAAACCC
1 GAAACCC
1155130 GAAACCC
1 GAAACCC
1155137 GAAA-CC
1 GAAACCC
1155143 GAAACCC
1 GAAACCC
1155150 GGAAACCCGC
1 -GAAA-CC-C
1155160 GGAAACCC
1 -GAAACCC
1155168 GAAA-CC
1 GAAACCC
1155174 G-AACCC
1 GAAACCC
*
1155180 G-CACCC
1 GAAACCC
1155186 GAAACCC
1 GAAACCC
1155193 GAAACCTC
1 GAAACC-C
*
1155201 GACACCC
1 GAAACCC
1155208 GAAACCC
1 GAAACCC
1155215 GAAAACCC
1 G-AAACCC
1155223 GAAACCC
1 GAAACCC
*
1155230 GAAACAC
1 GAAACCC
1155237 GAAACCC
1 GAAACCC
1155244 GGGCATAACCC
1 --G-A-AACCC
*
1155255 GAAA--A
1 GAAACCC
1155260 GAAACCC
1 GAAACCC
1155267 GGAAACCTC
1 -GAAACC-C
1155276 GAAACCCC
1 GAAA-CCC
1155284 GAAACCC
1 GAAACCC
1155291 GGATGAAACCC
1 ----GAAACCC
1155302 GAAACCC
1 GAAACCC
*
1155309 GCAACCC
1 GAAACCC
*
1155316 GAACACAC
1 GAA-ACCC
1155324 GAAACCC
1 GAAACCC
*
1155331 GCAACCC
1 GAAACCC
1155338 GAAACCCTC
1 GAAA-CC-C
* *
1155347 AACAACAC
1 GA-AACCC
1155355 GAAAACCC
1 G-AAACCC
1155363 GGAGGAAACCC
1 ----GAAACCC
*
1155374 GAAAAACC
1 G-AAACCC
*
1155382 GCAACCCC
1 G-AAACCC
1155390 GGATAACCC
1 -GA-AACCC
1155399 GAAACTCC
1 GAAAC-CC
1155407 GAAACCC
1 GAAACCC
1155414 GAAACCTC
1 GAAACC-C
1155422 GAATATCCC
1 GAA-A-CCC
1155431 GAAACCC
1 GAAACCC
1155438 GAAACTCC
1 GAAAC-CC
1155446 GAATACCCC
1 GAA-A-CCC
1155455 GAAAACCC
1 G-AAACCC
1155463 GAAACCC
1 GAAACCC
1155470 GAAAACCTC
1 G-AAACC-C
*
1155479 AAAACCC
1 GAAACCC
*
1155486 GCTAACCC
1 G-AAACCC
1155494 G-AACCC
1 GAAACCC
1155500 GGAAA-CC
1 -GAAACCC
*
1155507 GAAAACC
1 GAAACCC
1155514 GAACACCTC
1 GAA-ACC-C
1155523 GAAACCC
1 GAAACCC
1155530 GAAAAACTCC
1 G--AAAC-CC
1155540 GAAACCC
1 GAAACCC
1155547 GAAACCC
1 GAAACCC
1155554 GAAACCC
1 GAAACCC
1155561 G-AACCC
1 GAAACCC
1155567 GAAAACCC
1 G-AAACCC
1155575 GTAAACCC
1 G-AAACCC
1155583 GAAACCC
1 GAAACCC
1155590 GGAAACCC
1 -GAAACCC
1155598 GGAAACCC
1 -GAAACCC
*
1155606 GCAACCCC
1 G-AAACCC
1155614 GGAAACCC
1 -GAAACCC
1155622 GAAACCC
1 GAAACCC
1155629 GAAA-CC
1 GAAACCC
1155635 GAAACCC
1 GAAACCC
1155642 TGAAACCC
1 -GAAACCC
1155650 GAAACCC
1 GAAACCC
1155657 GAAACCC
1 GAAACCC
1155664 G-AA-CC
1 GAAACCC
*
1155669 GGAACCC
1 GAAACCC
1155676 GAAAACCC
1 G-AAACCC
1155684 GAAACCC
1 GAAACCC
1155691 GAAACCC
1 GAAACCC
****
1155698 G-AGGGA
1 GAAACCC
*
1155704 AAAACCC
1 GAAACCC
1155711 GGCAAACCC
1 -G-AAACCC
1155720 GAAAACCC
1 G-AAACCC
1155728 GTAAACCC
1 G-AAACCC
1155736 GAAAACCC
1 G-AAACCC
1155744 TGAAAATCCC
1 -G-AAA-CCC
1155754 GAAAACCC
1 G-AAACCC
1155762 GGGGAAACCC
1 ---GAAACCC
1155772 G-AACCC
1 GAAACCC
1155778 GAAACCC
1 GAAACCC
1155785 GAAACCC
1 GAAACCC
1155792 GAAA-CC
1 GAAACCC
*
1155798 GATAAAATCCT
1 G---AAA-CCC
1155809 GTAAACCC
1 G-AAACCC
1155817 GTAACACCC
1 G-AA-ACCC
1155826 GAAGAAACCC
1 ---GAAACCC
1155836 GAAACCC
1 GAAACCC
*
1155843 G-ACCCC
1 GAAACCC
1155849 GAAATCCC
1 GAAA-CCC
1155857 G-AACTCC
1 GAAAC-CC
1155864 GAGAAACCC
1 --GAAACCC
1155873 GAAAAAACCC
1 G---AAACCC
1155883 GAAACCC
1 GAAACCC
1155890 G-AACCC
1 GAAACCC
1155896 GTGAAACCC
1 --GAAACCC
1155905 GAAACCC
1 GAAACCC
1155912 GGTAAACCC
1 -G-AAACCC
1155921 GAAA--C
1 GAAACCC
1155926 GAAAACCCCC
1 G-AAA--CCC
1155936 GAAAAGACCC
1 G--AA-ACCC
* *
1155946 GATACCG
1 GAAACCC
1155953 GTATAACCC
1 G-A-AACCC
1155962 GAAACCC
1 GAAACCC
1155969 GATAACCC
1 GA-AACCC
*
1155977 GGTAA-CC
1 -GAAACCC
1155984 GAATACCC
1 GAA-ACCC
1155992 GAATA-CC
1 GAA-ACCC
1155999 GAATAACTCC
1 G-A-AAC-CC
1156009 GAAACCC
1 GAAACCC
1156016 GAAACCC
1 GAAACCC
1156023 G-AACCC
1 GAAACCC
1156029 GAAA-CC
1 GAAACCC
*
1156035 GCAACCC
1 GAAACCC
1156042 GAAACCC
1 GAAACCC
1156049 G-AACCC
1 GAAACCC
1156055 GAAAATCCC
1 G-AAA-CCC
1156064 G-AACCC
1 GAAACCC
*
1156070 GACATCCC
1 GA-AACCC
1156078 GAAACCTCC
1 GAAA-C-CC
1156087 GAAACCC
1 GAAACCC
1156094 GAAAACCC
1 G-AAACCC
*
1156102 G-AA--G
1 GAAACCC
1156106 GTAAACCC
1 G-AAACCC
1156114 GAAACCC
1 GAAACCC
1156121 GAAAACCC
1 G-AAACCC
*
1156129 GCAACCC
1 GAAACCC
1156136 GAGATAACCC
1 --GA-AACCC
1156146 GAAACCC
1 GAAACCC
*
1156153 GTAAACCA
1 G-AAACCC
1156161 GAATACCGC
1 GAA-ACC-C
*
1156170 TAAAACCC
1 -GAAACCC
1156178 GAAACCC
1 GAAACCC
1156185 TGGAAACCC
1 --GAAACCC
1156194 GAAA---
1 GAAACCC
1156198 GAAACCC
1 GAAACCC
*
1156205 GAATAAACC
1 G-A-AACCC
1156214 GATAA-CC
1 GA-AACCC
*
1156221 GAAAAACC
1 G-AAACCC
*
1156229 GAAAAACC
1 G-AAACCC
*
1156237 GAAACTC
1 GAAACCC
1156244 G-AACCC
1 GAAACCC
1156250 GAAAACCC
1 G-AAACCC
1156258 GAAACTCC
1 GAAAC-CC
1156266 GAAACCTGC
1 GAAACC--C
1156275 GAGAACCC
1 GA-AACCC
1156283 GAAAACCC
1 G-AAACCC
*
1156291 GACA-CC
1 GAAACCC
1156297 GAACACCC
1 GAA-ACCC
1156305 GAAATATCCC
1 G-AA-A-CCC
1156315 GAAATTGCCC
1 GAAA---CCC
1156325 GCAATACCC
1 G-AA-ACCC
1156334 GAAACCTCC
1 GAAA-C-CC
1156343 GAAAACCC
1 G-AAACCC
1156351 GAAATCCC
1 GAAA-CCC
*
1156359 GACACCC
1 GAAACCC
1156366 GAAACCC
1 GAAACCC
1156373 GAAACCC
1 GAAACCC
1156380 GGAAAACCC
1 -G-AAACCC
1156389 GAAAACCC
1 G-AAACCC
1156397 GAAACCC
1 GAAACCC
1156404 GAAACCC
1 GAAACCC
1156411 GAAACCC
1 GAAACCC
1156418 GAAACTCC
1 GAAAC-CC
1156426 GAAACCC
1 GAAACCC
1156433 GAAAACCC
1 G-AAACCC
1156441 GAAAACCC
1 G-AAACCC
1156449 GAATACCC
1 GAA-ACCC
1156457 GAGAACCC
1 GA-AACCC
1156465 GAAATCCC
1 GAAA-CCC
1156473 GAAAAACCGTC
1 G--AAACC--C
* *
1156484 TTAATCCC
1 -GAAACCC
1156492 GAAACCC
1 GAAACCC
*
1156499 GAGACCC
1 GAAACCC
*
1156506 AAAACCC
1 GAAACCC
1156513 G-AACCC
1 GAAACCC
1156519 GAGCAACCC
1 GA--AACCC
1156528 GAAATCCC
1 GAAA-CCC
1156536 GAAACCC
1 GAAACCC
*
1156543 GATACCCC
1 GA-AACCC
*
1156551 GACAATCC
1 GA-AACCC
* **
1156559 TAAA-AT
1 GAAACCC
* *
1156565 TAATCCC
1 GAAACCC
1156572 GAAACCC
1 GAAACCC
1156579 GAAAAACCC
1 G--AAACCC
1156588 GGGAAACCC
1 --GAAACCC
1156597 GAAAACCC
1 G-AAACCC
1156605 GAAACCC
1 GAAACCC
1156612 GAAATACCC
1 G-AA-ACCC
*
1156621 GAACCCC
1 GAAACCC
1156628 GAAACCCC
1 GAAA-CCC
1156636 GAAACGCC
1 GAAAC-CC
1156644 GGGAAA-CC
1 --GAAACCC
1156652 GTAAACCTC
1 G-AAACC-C
1156661 GGAATGACCC
1 -GAA--ACCC
1156671 TGAAA-CC
1 -GAAACCC
* *
1156678 GGACCCC
1 GAAACCC
*
1156685 GCAACCC
1 GAAACCC
* *
1156692 GTACCCC
1 GAAACCC
1156699 GAAAACCC
1 G-AAACCC
1156707 GAAACTCTC
1 GAAAC-C-C
*
1156716 GAAATCCA
1 GAAA-CCC
1156724 GAAACCC
1 GAAACCC
1156731 -AATACGTCC
1 GAA-AC--CC
1156740 GAAACTCC
1 GAAAC-CC
1156748 GAAACCC
1 GAAACCC
1156755 GGATAAACCC
1 -G--AAACCC
1156765 GAAACCC
1 GAAACCC
1156772 GAAACCC
1 GAAACCC
1156779 GAAACCC
1 GAAACCC
1156786 GACAAACCC
1 G--AAACCC
1156795 GAAACCC
1 GAAACCC
1156802 GAAAACCTC
1 G-AAACC-C
1156811 GAAACTCC
1 GAAAC-CC
*
1156819 GAATCCCC
1 GAA-ACCC
1156827 GTAAACCC
1 G-AAACCC
1156835 GGAAAACCCC
1 -G-AAA-CCC
1156845 GAATA-CC
1 GAA-ACCC
1156852 GAAACCTC
1 GAAACC-C
*
1156860 GAATCTTCC
1 GAAAC--CC
*
1156869 GATAATCCA
1 GA-AA-CCC
**
1156878 GAAAATAC
1 G-AAACCC
1156886 GAAATCCC
1 GAAA-CCC
1156894 G-AACCTC
1 GAAACC-C
1156901 GAAACCC
1 GAAACCC
1156908 GAAACTCC
1 GAAAC-CC
1156916 GTTAAACCC
1 G--AAACCC
1156925 TGAAACCC
1 -GAAACCC
1156933 GATACACCTC
1 GA-A-ACC-C
1156943 G-AA-CC
1 GAAACCC
*
1156948 GAAAACC
1 GAAACCC
1156955 GAAAACCC
1 G-AAACCC
1156963 GAAACTCC
1 GAAAC-CC
1156971 GAAACCC
1 GAAACCC
1156978 GAAAACCC
1 G-AAACCC
1156986 GAAATCCC
1 GAAA-CCC
1156994 GAAAACCC
1 G-AAACCC
1157002 GTAAA-CC
1 G-AAACCC
1157009 GAAACCC
1 GAAACCC
1157016 GGAAAACCCC
1 -G-AAA-CCC
1157026 GAAAACCTC
1 G-AAACC-C
*
1157035 GAACGCCC
1 GAA-ACCC
1157043 GAAATATCCC
1 G-AA-A-CCC
*
1157053 GAAAAACC
1 G-AAACCC
*
1157061 G-CACCC
1 GAAACCC
*
1157067 GATACCC
1 GAAACCC
1157074 GGAAACCC
1 -GAAACCC
***
1157082 G-AATTA
1 GAAACCC
1157088 G-AACCC
1 GAAACCC
*
1157094 GAGACCC
1 GAAACCC
1157101 GACAAACCC
1 G--AAACCC
1157110 GAAACCCC
1 GAAA-CCC
1157118 GAAACCC
1 GAAACCC
1157125 GGAAACCC
1 -GAAACCC
*
1157133 GCAATAAACC
1 G--A-AACCC
1157143 GAAACCC
1 GAAACCC
1157150 GGGAATACCC
1 --GAA-ACCC
1157160 GAAACCC
1 GAAACCC
1157167 GTAAACCC
1 G-AAACCC
1157175 GAAACCC
1 GAAACCC
1157182 TGAAA-CC
1 -GAAACCC
1157189 G-AACCGC
1 GAAACC-C
*
1157196 TAATATAACCCGC
1 ---GA-AA-CC-C
1157209 TGAAACCC
1 -GAAACCC
1157217 GAAACCC
1 GAAACCC
1157224 GTAAACCC
1 G-AAACCC
1157232 GTAAAACCC
1 G--AAACCC
1157241 GAAA---
1 GAAACCC
1157245 GACAACCGTC
1 GA-AACC--C
1157255 GAAACCC
1 GAAACCC
1157262 GATAACCC
1 GA-AACCC
1157270 GAAACCC
1 GAAACCC
1157277 GGAATACCC
1 -GAA-ACCC
1157286 GAAAAACCTC
1 G--AAACC-C
1157296 GAAACCC
1 GAAACCC
1157303 GAAACCC
1 GAAACCC
*
1157310 GAATCCCC
1 GAA-ACCC
1157318 G-AACCC
1 GAAACCC
1157324 GAAATCCC
1 GAAA-CCC
* *
1157332 GCACCCC
1 GAAACCC
1157339 G-AACCC
1 GAAACCC
1157345 GAATACCC
1 GAA-ACCC
1157353 TGAATACCC
1 -GAA-ACCC
1157362 GAAACCC
1 GAAACCC
1157369 GAAACCC
1 GAAACCC
*
1157376 GCAACCC
1 GAAACCC
1157383 GACAAACCC
1 G--AAACCC
1157392 GAAACTCC
1 GAAAC-CC
1157400 GAAACCCGC
1 GAAA-CC-C
1157409 GAAACCC
1 GAAACCC
1157416 GAATACCC
1 GAA-ACCC
1157424 GGGAAAACCC
1 --G-AAACCC
1157434 GAAACCC
1 GAAACCC
1157441 GGAAACTCC
1 -GAAAC-CC
*
1157450 GCAGCACCC
1 G-A-AACCC
*
1157459 GCTAACCC
1 G-AAACCC
1157467 GAAACCC
1 GAAACCC
1157474 GAAACCC
1 GAAACCC
1157481 GGAAACCC
1 -GAAACCC
*
1157489 GAACCCC
1 GAAACCC
1157496 GAAACCC
1 GAAACCC
1157503 GAAACCC
1 GAAACCC
1157510 GGAAACCC
1 -GAAACCC
1157518 GTAAACCC
1 G-AAACCC
1157526 GAAACCC
1 GAAACCC
1157533 G-AACCC
1 GAAACCC
1157539 GAAACCC
1 GAAACCC
1157546 GAAACCGC
1 GAAACC-C
*
1157554 GAATCCC
1 GAAACCC
1157561 GAAA-CC
1 GAAACCC
*
1157567 GAATACCT
1 GAA-ACCC
1157575 GAAACCC
1 GAAACCC
1157582 TGTAAAAACCTC
1 -G---AAACC-C
1157594 GAAACACCC
1 G-AA-ACCC
*
1157603 GAACCCC
1 GAAACCC
*
1157610 GATAACAC
1 GA-AACCC
1157618 GAAACCC
1 GAAACCC
1157625 GAAAACCC
1 G-AAACCC
*
1157633 GCAACCC
1 GAAACCC
1157640 GAAACCC
1 GAAACCC
1157647 GAAACCCC
1 GAAA-CCC
1157655 GAAACCC
1 GAAACCC
**
1157662 TAGGAAACAG
1 ---GAAACCC
1157672 GAAAACCC
1 G-AAACCC
1157680 TGAAACCC
1 -GAAACCC
*
1157688 GAAAAACGC
1 G--AAACCC
1157697 GAATAAACCC
1 G---AAACCC
1157707 TGAAACCC
1 -GAAACCC
*
1157715 GATAACTCT
1 GA-AAC-CC
*
1157724 GAAAATCC
1 G-AAACCC
1157732 GAAACCC
1 GAAACCC
*
1157739 TGAAAACC
1 -GAAACCC
1157747 GAAACCC
1 GAAACCC
1157754 GAAACCC
1 GAAACCC
1157761 GAAACCC
1 GAAACCC
1157768 GGAAACCC
1 -GAAACCC
1157776 GTAAACCTC
1 G-AAACC-C
1157785 GGGAAACCC
1 --GAAACCC
1157794 GAAACCCGAC
1 GAAA-CC--C
1157804 GAAATCCC
1 GAAA-CCC
1157812 GAAATTCCC
1 GAAA--CCC
1157821 GAAACTCC
1 GAAAC-CC
1157829 GAAACTCC
1 GAAAC-CC
1157837 TGAAAACCC
1 -G-AAACCC
1157846 GATATAATCCTC
1 G--A-AA-CC-C
1157858 GAAACCC
1 GAAACCC
1157865 GGAAAACCC
1 -G-AAACCC
1157874 GAAACCC
1 GAAACCC
1157881 GTGAAACCTC
1 --GAAACC-C
1157891 GAAACCC
1 GAAACCC
*
1157898 GCAA-CC
1 GAAACCC
1157904 G-AACCC
1 GAAACCC
1157910 G-AACCC
1 GAAACCC
1157916 GAAAACCC
1 G-AAACCC
*
1157924 GCAACCC
1 GAAACCC
1157931 GAAACCC
1 GAAACCC
1157938 GAAACCC
1 GAAACCC
1157945 GGGAAACCGC
1 --GAAACC-C
*
1157955 GATTACCC
1 GA-AACCC
1157963 GGAAATACTCC
1 -G-AA-AC-CC
1157974 AGAAACCCC
1 -GAAA-CCC
1157983 G-AACCC
1 GAAACCC
1157989 GAAACCC
1 GAAACCC
1157996 GAAAACCTC
1 G-AAACC-C
*
1158005 GGAACCC
1 GAAACCC
*
1158012 GAAACACG
1 GAAAC-CC
*
1158020 GAACCCC
1 GAAACCC
1158027 GAAAACCC
1 G-AAACCC
*
1158035 GAAACCG
1 GAAACCC
1158042 GAAAAACCC
1 G--AAACCC
1158051 GAAACCC
1 GAAACCC
1158058 GAAAACCCC
1 G-AAA-CCC
1158067 GAAACCC
1 GAAACCC
1158074 GAAA-CC
1 GAAACCC
1158080 GAAACCCC
1 GAAA-CCC
1158088 GCATATAACCC
1 G---A-AACCC
1158099 G-AACCTGC
1 GAAACC--C
1158107 GAAACCC
1 GAAACCC
1158114 GGAAAACCC
1 -G-AAACCC
**
1158123 GTAATA-TA
1 G-AA-ACCC
* **
1158131 TATCCCTC
1 GAAACC-C
*
1158139 GGAAAACTC
1 -G-AAACCC
1158148 GAAAACCC
1 G-AAACCC
1158156 GAAAGCCC
1 GAAA-CCC
1158164 TGAAAACTCCC
1 -G-AAA--CCC
1158175 TGAAACCC
1 -GAAACCC
1158183 TGAAACCC
1 -GAAACCC
1158191 GAAA-CC
1 GAAACCC
1158197 GAAAACCC
1 G-AAACCC
1158205 GAAACCC
1 GAAACCC
1158212 TGGGAAACCC
1 ---GAAACCC
1158222 G-AACCC
1 GAAACCC
1158228 GAAACCTC
1 GAAACC-C
1158236 GGAAACCC
1 -GAAACCC
*
1158244 TTAGAACCC
1 -GA-AACCC
1158253 TGAAAACCC
1 -G-AAACCC
1158262 GAAACCC
1 GAAACCC
1158269 GGAAACCC
1 -GAAACCC
1158277 GGAAAACCC
1 -G-AAACCC
1158286 GATGGAAACCC
1 ----GAAACCC
1158297 GAAACTCTC
1 GAAAC-C-C
*
1158306 GGACACCC
1 -GAAACCC
1158314 GAAACCC
1 GAAACCC
*
1158321 GCAA-CC
1 GAAACCC
*
1158327 G-AACCT
1 GAAACCC
1158333 GAAACCC
1 GAAACCC
*
1158340 TAAA-CC
1 GAAACCC
1158346 GAAA-CC
1 GAAACCC
1158352 GAAAACCC
1 G-AAACCC
1158360 GGAAACCC
1 -GAAACCC
*
1158368 GGAACCCC
1 -GAAACCC
1158376 TGAAACCC
1 -GAAACCC
1158384 GAATAACTCC
1 G-A-AAC-CC
1158394 GAAACCC
1 GAAACCC
1158401 GAATACCC
1 GAA-ACCC
1158409 GGGTAAACCC
1 --G-AAACCC
*
1158419 GGAACCCC
1 -GAAACCC
*
1158427 GCATACCC
1 G-AAACCC
1158435 GATTATACCC
1 GA--A-ACCC
*
1158445 GGAACCC
1 GAAACCC
1158452 -AAACCC
1 GAAACCC
1158458 GAAACCC
1 GAAACCC
1158465 GAAACCC
1 GAAACCC
*
1158472 GATAATACC
1 GA-AA-CCC
* **
1158481 -ATGGA-GG
1 GA--AACCC
1158488 GAAACCC
1 GAAACCC
1158495 GAAA-CC
1 GAAACCC
*
1158501 GAGAAACC
1 GA-AACCC
1158509 GTCAAACCC
1 G--AAACCC
**
1158518 GCTACCTCCC
1 G--A-AACCC
1158528 GAAACCGC
1 GAAACC-C
1158536 GAAACCC
1 GAAACCC
**
1158543 GCAAA-AA
1 G-AAACCC
*
1158550 AAAACCC
1 GAAACCC
1158557 GTAAACCC
1 G-AAACCC
1158565 GAAACCC
1 GAAACCC
*
1158572 TAAACCC
1 GAAACCC
1158579 GATAAACCC
1 G--AAACCC
1158588 GAAACCC
1 GAAACCC
1158595 GAAA-CC
1 GAAACCC
1158601 GAAACCTC
1 GAAACC-C
1158609 GAAACCCC
1 GAAA-CCC
1158617 GGCAAACCC
1 -G-AAACCC
*
1158626 -AAAACC
1 GAAACCC
*
1158632 GAAACCA
1 GAAACCC
*
1158639 GAAACCA
1 GAAACCC
1158646 GAAACTCTC
1 GAAAC-C-C
*
1158655 GGAACCCC
1 -GAAACCC
1158663 GAAACCC
1 GAAACCC
*
1158670 GAATACAC
1 GAA-ACCC
1158678 GAAACGCC
1 GAAAC-CC
1158686 GGAAACCC
1 -GAAACCC
1158694 GATAACCC
1 GA-AACCC
1158702 GAAACCC
1 GAAACCC
1158709 GAAACCC
1 GAAACCC
1158716 TGAAACCC
1 -GAAACCC
1158724 GAAA-CC
1 GAAACCC
1158730 GAAACCC
1 GAAACCC
*
1158737 GAAACCGA
1 GAAACC-C
*
1158745 GAGGAAACC
1 GA--AACCC
1158754 GAAAACCC
1 G-AAACCC
1158762 GAAACCCC
1 GAAA-CCC
1158770 GAAACCC
1 GAAACCC
*
1158777 GAAAACC
1 GAAACCC
1158784 G-AACCC
1 GAAACCC
1158790 GAAACCC
1 GAAACCC
*
1158797 TAAAACCC
1 -GAAACCC
1158805 GAAACCC
1 GAAACCC
1158812 GTACAACCC
1 G-A-AACCC
*
1158821 TAAAACCC
1 -GAAACCC
1158829 GTAAAAACCC
1 G---AAACCC
1158839 GTAAACCC
1 G-AAACCC
1158847 GAAACCC
1 GAAACCC
*
1158854 G-CA-CC
1 GAAACCC
1158859 GAAACCC
1 GAAACCC
1158866 GAAA-CC
1 GAAACCC
1158872 GAAACCC
1 GAAACCC
1158879 GGATAACCC
1 -GA-AACCC
*
1158888 -TAACCC
1 GAAACCC
1158894 GAAA-CC
1 GAAACCC
1158900 GAAACCC
1 GAAACCC
1158907 G-AACCC
1 GAAACCC
1158913 G-AACCC
1 GAAACCC
*
1158919 GAAACAC
1 GAAACCC
1158926 G-AACCC
1 GAAACCC
1158932 GGAAACCCC
1 -GAAA-CCC
1158941 G-AACCC
1 GAAACCC
1158947 TGAAACCC
1 -GAAACCC
1158955 GAAACCC
1 GAAACCC
1158962 GAAAACCC
1 G-AAACCC
1158970 GAAACCC
1 GAAACCC
1158977 GAAACCTC
1 GAAACC-C
*
1158985 GCAAATCCG
1 G-AAA-CCC
1158994 GAAACCC
1 GAAACCC
1159001 GAAACCCC
1 GAAA-CCC
1159009 AGGAAACCC
1 --GAAACCC
1159018 TGATAACTCC
1 -GA-AAC-CC
1159028 GAAACCC
1 GAAACCC
1159035 GAAACTCC
1 GAAAC-CC
1159043 GAAACCC
1 GAAACCC
1159050 TGAAAACCC
1 -G-AAACCC
1159059 GAAACCC
1 GAAACCC
1159066 GAAACCC
1 GAAACCC
1159073 G-AACCC
1 GAAACCC
1159079 GAATACTCC
1 GAA-AC-CC
1159088 GAAACCC
1 GAAACCC
1159095 GAAATCCC
1 GAAA-CCC
1159103 GAAAACCTC
1 G-AAACC-C
1159112 GAAACCC
1 GAAACCC
1159119 GAAGACCC
1 GAA-ACCC
1159127 G-AA-CC
1 GAAACCC
*
1159132 GAAACCT
1 GAAACCC
1159139 GAAAGCCC
1 GAAA-CCC
*
1159147 GCAATCCC
1 G-AAACCC
1159155 GATAACCC
1 GA-AACCC
*
1159163 TATAATCCC
1 GA-AA-CCC
*
1159172 GAGTAACCG
1 GA--AACCC
1159181 GATAAACCC
1 G--AAACCC
1159190 GAGAACCC
1 GA-AACCC
1159198 GAAACCC
1 GAAACCC
1159205 GGAAAATCCC
1 -G-AAA-CCC
1159215 GAAACCC
1 GAAACCC
1159222 GAAACCC
1 GAAACCC
1159229 GGAAACTACC
1 -GAAAC--CC
1159239 GATAAACCC
1 G--AAACCC
1159248 GAAACCC
1 GAAACCC
1159255 GAAAACCC
1 G-AAACCC
1159263 GAAAATCCC
1 G-AAA-CCC
1159272 GAAACTCTC
1 GAAAC-C-C
1159281 GGGAAAACCCGC
1 --G-AAA-CC-C
1159293 GAAACCC
1 GAAACCC
1159300 GAATACCC
1 GAA-ACCC
1159308 G-AA-CC
1 GAAACCC
*
1159313 GAACCTCC
1 GAAAC-CC
1159321 GAAATCCC
1 GAAA-CCC
1159329 GAAAACCC
1 G-AAACCC
1159337 GAAACCTC
1 GAAACC-C
1159345 GAAACCC
1 GAAACCC
1159352 GAATACTCC
1 GAA-AC-CC
* *
1159361 -AATTCTC
1 GAA-ACCC
1159368 --AA-CC
1 GAAACCC
1159372 GAAACCCC
1 GAAA-CCC
1159380 GAAACCC
1 GAAACCC
1159387 GAAACCC
1 GAAACCC
*
1159394 GCAAACCT
1 G-AAACCC
1159402 GAAACCC
1 GAAACCC
1159409 GAAACCCC
1 GAAA-CCC
1159417 GAATACTCC
1 GAA-AC-CC
1159426 GTAATACCC
1 G-AA-ACCC
1159435 GAATACCC
1 GAA-ACCC
1159443 GGATAACCC
1 -GA-AACCC
*
1159452 GAAAACCG
1 G-AAACCC
1159460 GAAACTCC
1 GAAAC-CC
*
1159468 GAAAGACC
1 GAAA-CCC
1159476 GAAACCC
1 GAAACCC
1159483 GAAACCCC
1 GAAA-CCC
1159491 GAAAAACACGC
1 G--AAAC-C-C
1159502 G-AACCC
1 GAAACCC
1159508 TGGAAACTCC
1 --GAAAC-CC
1159518 GAAACCC
1 GAAACCC
1159525 GAAACTCC
1 GAAAC-CC
1159533 GAAA---
1 GAAACCC
1159537 GAAA-CC
1 GAAACCC
1159543 GAAATCCC
1 GAAA-CCC
1159551 GAAACCC
1 GAAACCC
1159558 AAGAAATACCC
1 --G-AA-ACCC
1159569 GAAACCC
1 GAAACCC
1159576 TGGCAAACCC
1 --G-AAACCC
1159586 GAAACCC
1 GAAACCC
1159593 GAACACCC
1 GAA-ACCC
1159601 GAAACCC
1 GAAACCC
1159608 GATAACCC
1 GA-AACCC
1159616 G-AACCC
1 GAAACCC
1159622 GAATA-CC
1 GAA-ACCC
1159629 GAAATCCC
1 GAAA-CCC
1159637 GAAACCC
1 GAAACCC
1159644 GCAAACTCC
1 G-AAAC-CC
1159653 GTAAACCC
1 G-AAACCC
1159661 GAAATGACTCC
1 G-AA--AC-CC
* *
1159672 GGGACCCC
1 -GAAACCC
1159680 G-AACCC
1 GAAACCC
1159686 GTGAACACCC
1 --GAA-ACCC
1159696 -AAACCC
1 GAAACCC
1159702 GAAACCC
1 GAAACCC
1159709 GGAAACCC
1 -GAAACCC
1159717 GAAACCTC
1 GAAACC-C
1159725 GAAACCC
1 GAAACCC
1159732 GAAACCC
1 GAAACCC
1159739 GAAACCC
1 GAAACCC
1159746 GTAAACCC
1 G-AAACCC
1159754 GAATACCC
1 GAA-ACCC
*
1159762 GAAACAC
1 GAAACCC
*
1159769 GAAACCG
1 GAAACCC
1159776 GAATAACCC
1 G-A-AACCC
1159785 G-AACCC
1 GAAACCC
1159791 GAAACTCC
1 GAAAC-CC
1159799 GAAAAACCC
1 G--AAACCC
1159808 G--ACCC
1 GAAACCC
1159813 GGAAATCCC
1 -GAAA-CCC
1159822 GAATACCC
1 GAA-ACCC
1159830 G--ACCC
1 GAAACCC
1159835 GTGGAAAACCC
1 ---G-AAACCC
1159846 GAAACCCC
1 GAAA-CCC
1159854 GAAACCC
1 GAAACCC
1159861 GATGTAAACCC
1 ---G-AAACCC
1159872 -AAA-CC
1 GAAACCC
1159877 GAAAACCC
1 G-AAACCC
1159885 GAAACCC
1 GAAACCC
1159892 GAAACCC
1 GAAACCC
1159899 GAAACCC
1 GAAACCC
1159906 GATAAACCC
1 G--AAACCC
*
1159915 GAAAACC
1 GAAACCC
*
1159922 GCAACCC
1 GAAACCC
*
1159929 GCAACCC
1 GAAACCC
1159936 GAAACCC
1 GAAACCC
1159943 GGAAAACCC
1 -G-AAACCC
*
1159952 GCAA-CC
1 GAAACCC
1159958 GAAACCC
1 GAAACCC
1159965 GGAGTAACCC
1 -GA--AACCC
*
1159975 GAAACCA
1 GAAACCC
1159982 GAAACCC
1 GAAACCC
1159989 G-AA-CC
1 GAAACCC
*
1159994 GAAACCT
1 GAAACCC
1160001 GAAACCC
1 GAAACCC
1160008 GAAACCC
1 GAAACCC
*
1160015 GAATCCC
1 GAAACCC
1160022 GAAACCC
1 GAAACCC
*
1160029 GCAACCC
1 GAAACCC
* *
1160036 TAACCTCC
1 GAAAC-CC
1160044 GAAACCC
1 GAAACCC
1160051 GAAACCC
1 GAAACCC
1160058 GAAACCC
1 GAAACCC
1160065 GATTAAACCC
1 G---AAACCC
1160075 GAAACCC
1 GAAACCC
1160082 GGAAACCC
1 -GAAACCC
1160090 GAAAAACCC
1 G--AAACCC
1160099 GTGAAAACCC
1 --G-AAACCC
1160109 GAAACCC
1 GAAACCC
1160116 GTAAACCC
1 G-AAACCC
*
1160124 GCGAACCC
1 G-AAACCC
1160132 GAAACCC
1 GAAACCC
1160139 GTAATACTCC
1 G-AA-AC-CC
**
1160149 GCCACCC
1 GAAACCC
*
1160156 TGGACACCCC
1 --GA-AACCC
1160166 TTTG-AACCC
1 ---GAAACCC
1160175 GAAACCC
1 GAAACCC
1160182 GCAAACCC
1 G-AAACCC
1160190 GAAACCC
1 GAAACCC
*
1160197 TTAAACCC
1 -GAAACCC
1160205 GAAACCC
1 GAAACCC
1160212 GAAACCTC
1 GAAACC-C
*
1160220 TTAAACCC
1 -GAAACCC
*
1160228 GAAAGCC
1 GAAACCC
*
1160235 GACACCC
1 GAAACCC
1160242 GATTAATCCC
1 GA--AA-CCC
1160252 GAAA-CC
1 GAAACCC
1160258 GAAACCC
1 GAAACCC
1160265 GAAACCC
1 GAAACCC
1160272 GGAAA--C
1 -GAAACCC
1160278 GAAACCC
1 GAAACCC
1160285 GAAACCC
1 GAAACCC
*
1160292 GAAGAAACCG
1 ---GAAACCC
1160302 GAAATCCC
1 GAAA-CCC
*
1160310 GGAAAACCA
1 -G-AAACCC
*
1160319 GAACCCC
1 GAAACCC
1160326 GAAACCC
1 GAAACCC
1160333 GGAATACCTC
1 -GAA-ACC-C
1160343 GAAAAGCCTC
1 G-AAA-CC-C
1160353 GAAACCC
1 GAAACCC
1160360 GGAAACCC
1 -GAAACCC
1160368 G-AACCC
1 GAAACCC
1160374 GAAAACTCC
1 G-AAAC-CC
1160383 GAAA-CC
1 GAAACCC
1160389 GAAA-CC
1 GAAACCC
1160395 GAAACCC
1 GAAACCC
1160402 GAAACCCC
1 GAAA-CCC
*
1160410 TAAAACCC
1 -GAAACCC
1160418 GAAACCC
1 GAAACCC
1160425 GAAACCC
1 GAAACCC
1160432 GAAACCC
1 GAAACCC
**
1160439 TGTAAATAC
1 -G-AAACCC
*
1160448 GAAACCG
1 GAAACCC
1160455 GATGAACCC
1 GA--AACCC
1160464 GAGAACCC
1 GA-AACCC
*
1160472 GAAACCTGGG
1 GAAACC---C
1160482 GAAACCC
1 GAAACCC
1160489 GATAA-CC
1 GA-AACCC
1160496 GAAACCC
1 GAAACCC
1160503 GAAACCC
1 GAAACCC
1160510 G-AACCC
1 GAAACCC
1160516 GAAACCC
1 GAAACCC
*
1160523 GAATCCC
1 GAAACCC
1160530 GAAA-CC
1 GAAACCC
1160536 GAAA-CC
1 GAAACCC
1160542 GAAA-CC
1 GAAACCC
1160548 GAAACCC
1 GAAACCC
1160555 GAAACCCC
1 GAAA-CCC
1160563 GATAACCC
1 GA-AACCC
* *
1160571 GGAATCCA
1 -GAAACCC
1160579 GTAAATTCCCC
1 G-AAA---CCC
1160590 GGAAAACCC
1 -G-AAACCC
1160599 GGAAAACCC
1 -G-AAACCC
1160608 GAAACCTC
1 GAAACC-C
1160616 GAAACCC
1 GAAACCC
1160623 -AAACCC
1 GAAACCC
*
1160629 TCAAACCC
1 -GAAACCC
1160637 GAGAAACCC
1 --GAAACCC
1160646 GAAA-CC
1 GAAACCC
1160652 GAAACCC
1 GAAACCC
1160659 GAAACCC
1 GAAACCC
1160666 GATAACCC
1 GA-AACCC
1160674 GGAAACCCC
1 -GAAA-CCC
*
1160683 GAAACCG
1 GAAACCC
1160690 GACAACCC
1 GA-AACCC
1160698 GAGAACCC
1 GA-AACCC
1160706 GATCAACCC
1 GA--AACCC
1160715 GAAACCC
1 GAAACCC
*
1160722 GAAAACC
1 GAAACCC
1160729 -AAACCC
1 GAAACCC
1160735 GATAACTCC
1 GA-AAC-CC
1160744 GAAACCC
1 GAAACCC
1160751 GATAACCC
1 GA-AACCC
1160759 GAAACCC
1 GAAACCC
1160766 GAAAACCC
1 G-AAACCC
1160774 GAATACCC
1 GAA-ACCC
1160782 GGGGAAACCCC
1 ---GAAA-CCC
1160793 GAAACCTC
1 GAAACC-C
1160801 GAAACCC
1 GAAACCC
*
1160808 GAAACTC
1 GAAACCC
1160815 GAATACCGTC
1 GAA-ACC--C
1160825 GAAACCC
1 GAAACCC
*
1160832 GTAAACCA
1 G-AAACCC
1160840 GATAACCC
1 GA-AACCC
1160848 GAAACCC
1 GAAACCC
1160855 GAACAAACCC
1 G---AAACCC
* *
1160865 GTACCCC
1 GAAACCC
1160872 GGGAAACCC
1 --GAAACCC
1160881 TGAAACCTTC
1 -GAAACC--C
1160891 GAAAACTCC
1 G-AAAC-CC
1160900 GGATAAACCC
1 -G--AAACCC
1160910 GTAAAAACCC
1 G---AAACCC
1160920 GGGATAAACCC
1 --G--AAACCC
*
1160931 GATA-CC
1 GAAACCC
1160937 GATTTAAACCC
1 G----AAACCC
1160948 G-AACCC
1 GAAACCC
1160954 GAAAACCC
1 G-AAACCC
1160962 TGAAGA---
1 -GAA-ACCC
1160968 GAAACCTC
1 GAAACC-C
1160976 G-AACCTC
1 GAAACC-C
1160983 AGAAACTCC
1 -GAAAC-CC
1160992 GAAACCC
1 GAAACCC
1160999 GAAACCC
1 GAAACCC
1161006 GAAAACCC
1 G-AAACCC
1161014 G-AACCC
1 GAAACCC
*
1161020 TAAACCTC
1 GAAACC-C
1161028 -AAACCC
1 GAAACCC
1161034 GAAACCC
1 GAAACCC
1161041 GAAACCC
1 GAAACCC
1161048 GGAAA-CC
1 -GAAACCC
1161055 GACAATCCC
1 GA-AA-CCC
1161064 GAAACCC
1 GAAACCC
1161071 GAAAAACCC
1 G--AAACCC
1161080 GAAA---
1 GAAACCC
* *
1161084 TAAACTC
1 GAAACCC
1161091 GAAAACCC
1 G-AAACCC
1161099 G-AACCC
1 GAAACCC
1161105 GATAACCC
1 GA-AACCC
1161113 GAAACCC
1 GAAACCC
1161120 GAAACCC
1 GAAACCC
1161127 GAAAACCC
1 G-AAACCC
*
1161135 G--A-CT
1 GAAACCC
1161139 GAAACACC
1 GAAAC-CC
*
1161147 GACACTCC
1 GAAAC-CC
1161155 GAAACCC
1 GAAACCC
1161162 GAAACCC
1 GAAACCC
1161169 GAAAACCC
1 G-AAACCC
1161177 GAATACCC
1 GAA-ACCC
*
1161185 GACAACCT
1 GA-AACCC
1161193 GAAACCC
1 GAAACCC
1161200 GAAAACCC
1 G-AAACCC
1161208 G-AACCC
1 GAAACCC
1161214 GAAACCC
1 GAAACCC
1161221 GAAACCC
1 GAAACCC
1161228 GAAACCC
1 GAAACCC
1161235 GAAAACCC
1 G-AAACCC
1161243 GAAACCC
1 GAAACCC
1161250 GAAACCC
1 GAAACCC
1161257 G-AA--C
1 GAAACCC
1161261 GAAACCC
1 GAAACCC
1161268 GAAACCCC
1 GAAA-CCC
1161276 GAAACCC
1 GAAACCC
1161283 GAAACCC
1 GAAACCC
1161290 GAACACCC
1 GAA-ACCC
*
1161298 GAAATCC
1 GAAACCC
1161305 GATAACCC
1 GA-AACCC
*
1161313 GAAATCCTGA
1 GAAA-CC--C
1161323 GAAACCCGC
1 GAAA-CC-C
1161332 GGAAATACCC
1 -G-AA-ACCC
1161342 TAGAAAACCC
1 --G-AAACCC
1161352 GAAACCC
1 GAAACCC
*
1161359 GAAACGCT
1 GAAAC-CC
1161367 GAAACCC
1 GAAACCC
*
1161374 GACACCC
1 GAAACCC
1161381 G-AA-CC
1 GAAACCC
1161386 GATAACCC
1 GA-AACCC
1161394 GAAAACCC
1 G-AAACCC
1161402 GAAACCC
1 GAAACCC
1161409 GAGAAACCC
1 --GAAACCC
1161418 GATAACCC
1 GA-AACCC
1161426 GAAAACCC
1 G-AAACCC
1161434 GAAACCC
1 GAAACCC
1161441 GAAACCC
1 GAAACCC
1161448 GAAACCC
1 GAAACCC
*
1161455 GATAAACC
1 GA-AACCC
*
1161463 GAACCCC
1 GAAACCC
1161470 GAAACCC
1 GAAACCC
1161477 GAAACCC
1 GAAACCC
*
1161484 GAAACCA
1 GAAACCC
*
1161491 GAACACTC
1 GAA-ACCC
1161499 GAAACCC
1 GAAACCC
1161506 GGAAACCC
1 -GAAACCC
1161514 GAAA-CC
1 GAAACCC
1161520 GAAACCC
1 GAAACCC
1161527 GAATACCC
1 GAA-ACCC
1161535 GTAAAACCC
1 G--AAACCC
1161544 GAAAAATGCCC
1 G--AAA--CCC
1161555 GAAACCC
1 GAAACCC
1161562 GAAA-CC
1 GAAACCC
1161568 GAAA-CC
1 GAAACCC
1161574 GAAACCC
1 GAAACCC
1161581 GAAACCC
1 GAAACCC
1161588 GAAACCC
1 GAAACCC
1161595 GAAACCCC
1 GAAA-CCC
*
1161603 GAGACCC
1 GAAACCC
*
1161610 TAAACCCC
1 GAAA-CCC
1161618 GAAAACCTC
1 G-AAACC-C
1161627 GGAGAAACCC
1 ---GAAACCC
*
1161637 GAAACCG
1 GAAACCC
1161644 GAAACCC
1 GAAACCC
1161651 GAAACCC
1 GAAACCC
1161658 GAAACCC
1 GAAACCC
1161665 GAAACCC
1 GAAACCC
*
1161672 -AAACCGA
1 GAAACC-C
1161679 GAATGCACCC
1 GAA---ACCC
1161689 GAAACCC
1 GAAACCC
1161696 GAAACCC
1 GAAACCC
1161703 GAGAACCC
1 GA-AACCC
1161711 GAAACCC
1 GAAACCC
1161718 GAAAACCC
1 G-AAACCC
1161726 GGGAAAACCC
1 --G-AAACCC
1161736 GAAACCC
1 GAAACCC
1161743 GAAACCC
1 GAAACCC
1161750 GAGAA-CC
1 GA-AACCC
1161757 GAAATCCTC
1 GAAA-CC-C
1161766 GAAACCC
1 GAAACCC
1161773 GAAATCCTC
1 GAAA-CC-C
1161782 GACAACCC
1 GA-AACCC
1161790 GAAA-CC
1 GAAACCC
1161796 G-AACCC
1 GAAACCC
1161802 GAAACCC
1 GAAACCC
1161809 GGAAACCC
1 -GAAACCC
1161817 GGAAACCC
1 -GAAACCC
1161825 GAAATCCC
1 GAAA-CCC
1161833 GAAAACCC
1 G-AAACCC
1161841 G-AA--C
1 GAAACCC
1161845 GAAACCGC
1 GAAACC-C
1161853 GAAACCC
1 GAAACCC
1161860 GACAACCCC
1 GA-AA-CCC
1161869 GGAAAACCC
1 -G-AAACCC
1161878 GAAACCC
1 GAAACCC
1161885 G-AACACC
1 GAAAC-CC
1161892 -AAACCC
1 GAAACCC
*
1161898 GTGAACCC
1 G-AAACCC
*
1161906 GAAAACC
1 GAAACCC
1161913 GAAACCC
1 GAAACCC
1161920 GAAA-CC
1 GAAACCC
*
1161926 GAAATCC
1 GAAACCC
1161933 GAAACCCCC
1 GAAA--CCC
*
1161942 GCATACCCC
1 G-A-AACCC
1161951 GAAACCC
1 GAAACCC
1161958 GAAACCC
1 GAAACCC
1161965 GAAACCC
1 GAAACCC
1161972 GAAACCC
1 GAAACCC
1161979 GAAAACCC
1 G-AAACCC
1161987 GAAACCCC
1 GAAA-CCC
*
1161995 GAACCCC
1 GAAACCC
1162002 GAAACTCC
1 GAAAC-CC
1162010 GATAACCC
1 GA-AACCC
*
1162018 GGAAAACC
1 -GAAACCC
* ****
1162026 TATGGTC
1 GAAACCC
**
1162033 -ACCCCC
1 GAAACCC
1162039 TGAAAACCC
1 -G-AAACCC
*
1162048 GTAAACTC
1 G-AAACCC
1162056 GTAAACCC
1 G-AAACCC
1162064 G-AA-CC
1 GAAACCC
1162069 GAAAACCC
1 G-AAACCC
1162077 GAAAACCC
1 G-AAACCC
1162085 GAAACCC
1 GAAACCC
1162092 GAAACCC
1 GAAACCC
1162099 GAAACCC
1 GAAACCC
1162106 TGAAACCC
1 -GAAACCC
1162114 GAAACCC
1 GAAACCC
1162121 GAAACCC
1 GAAACCC
1162128 GATAACCC
1 GA-AACCC
*
1162136 -TAACCC
1 GAAACCC
1162142 GTAAACCC
1 G-AAACCC
1162150 GAAAACCC
1 G-AAACCC
*
1162158 GACACCC
1 GAAACCC
1162165 GAAACCC
1 GAAACCC
1162172 G-AACCC
1 GAAACCC
1162178 GAAACCC
1 GAAACCC
*
1162185 GAACCCC
1 GAAACCC
1162192 GAAACCC
1 GAAACCC
1162199 GAGAA-CC
1 GA-AACCC
1162206 GAAAACCCC
1 G-AAA-CCC
1162215 GAATACCC
1 GAA-ACCC
1162223 --AACCC
1 GAAACCC
1162228 TGATCAAACCC
1 -G---AAACCC
1162239 GAAACCC
1 GAAACCC
1162246 GAAACCC
1 GAAACCC
1162253 GAAACCTC
1 GAAACC-C
1162261 GAAACCC
1 GAAACCC
1162268 GGAAACCC
1 -GAAACCC
1162276 GAAACCC
1 GAAACCC
1162283 G-AACTCC
1 GAAAC-CC
*
1162290 GATACCC
1 GAAACCC
1162297 GAACACCC
1 GAA-ACCC
1162305 GAAA-CC
1 GAAACCC
1162311 GAAACCC
1 GAAACCC
*
1162318 AAAACCCGC
1 GAAA-CC-C
1162327 GAAACCC
1 GAAACCC
1162334 GAAAACCC
1 G-AAACCC
1162342 GTAAACCC
1 G-AAACCC
1162350 G-AACTCC
1 GAAAC-CC
1162357 TGAAACCC
1 -GAAACCC
1162365 GAAAACCTC
1 G-AAACC-C
1162374 GAAACCC
1 GAAACCC
1162381 GAAACCC
1 GAAACCC
1162388 GAAAACCC
1 G-AAACCC
1162396 GTAAAACCC
1 G--AAACCC
*
1162405 GAGAACCAGG
1 GA-AACC--C
1162415 GAAACCC
1 GAAACCC
1162422 GAAACCC
1 GAAACCC
1162429 GAAACCC
1 GAAACCC
1162436 GAAA-CC
1 GAAACCC
1162442 GAAACCC
1 GAAACCC
1162449 GAAACCC
1 GAAACCC
1162456 GAAACCC
1 GAAACCC
1162463 GAAACCC
1 GAAACCC
1162470 GAAACCC
1 GAAACCC
1162477 GAAACCC
1 GAAACCC
1162484 GAGTAACCCC
1 GA--AA-CCC
1162494 TGAAACCTC
1 -GAAACC-C
1162503 GAAATCCC
1 GAAA-CCC
1162511 GAAACCCC
1 GAAA-CCC
1162519 GTGAATACTCC
1 --GAA-AC-CC
1162530 GGAAACCC
1 -GAAACCC
1162538 GAACACCC
1 GAA-ACCC
1162546 GAAACCC
1 GAAACCC
1162553 GAAACCC
1 GAAACCC
1162560 GAAACCC
1 GAAACCC
*
1162567 GAATACCG
1 GAA-ACCC
1162575 GAAAACCC
1 G-AAACCC
1162583 GAAAACCC
1 G-AAACCC
1162591 GAAACCCC
1 GAAA-CCC
1162599 GAAACCC
1 GAAACCC
*
1162606 GGAACCC
1 GAAACCC
1162613 GAAACCC
1 GAAACCC
1162620 GAAACCC
1 GAAACCC
*
1162627 GAAAACC
1 GAAACCC
1162634 GAAACCC
1 GAAACCC
1162641 GAATACCC
1 GAA-ACCC
*
1162649 TGCAACCC
1 -GAAACCC
*
1162657 GCTAACCC
1 G-AAACCC
*
1162665 GAATCCC
1 GAAACCC
*
1162672 TGAGAAACCTA
1 ---GAAACC-C
1162683 GAAACCC
1 GAAACCC
*
1162690 GAAAACC
1 GAAACCC
*
1162697 G-CACCTC
1 GAAACC-C
1162704 -AAACCC
1 GAAACCC
*
1162710 GAAACCG
1 GAAACCC
1162717 GAAA-CC
1 GAAACCC
1162723 GAAACTCTC
1 GAAAC-C-C
*
1162732 GTAAAAACC
1 G--AAACCC
1162741 GAAA---
1 GAAACCC
*
1162745 AAAACCC
1 GAAACCC
1162752 GAAACCC
1 GAAACCC
1162759 GAAAACCC
1 G-AAACCC
1162767 GAAACCC
1 GAAACCC
1162774 GAAAACCC
1 G-AAACCC
*
1162782 GAAACAC
1 GAAACCC
1162789 GAAATACCC
1 G-AA-ACCC
1162798 GGAAACCC
1 -GAAACCC
*
1162806 TAAACCC
1 GAAACCC
1162813 GAAA-CC
1 GAAACCC
**
1162819 GACCCCC
1 GAAACCC
1162826 GTAAACCGTTC
1 G-AAACC---C
1162837 GAAACCC
1 GAAACCC
*
1162844 TAAACCC
1 GAAACCC
*
1162851 GAACCCC
1 GAAACCC
1162858 GAAACCC
1 GAAACCC
*
1162865 GGAAACCT
1 -GAAACCC
1162873 GAAATACTCC
1 G-AA-AC-CC
1162883 GAAACCC
1 GAAACCC
1162890 GAAAACCC
1 G-AAACCC
1162898 GAAACCC
1 GAAACCC
1162905 GGTAAAACCC
1 -G--AAACCC
1162915 GAGATACCC
1 GA-A-ACCC
*
1162924 GGAACCC
1 GAAACCC
1162931 GGAAACTCCC
1 -GAAA--CCC
1162941 TGGAAAACCC
1 --G-AAACCC
1162951 GAAAACCCC
1 G-AAA-CCC
1162960 GAAA-CC
1 GAAACCC
1162966 GAAACCC
1 GAAACCC
1162973 G-AACCC
1 GAAACCC
1162979 GCAAACCC
1 G-AAACCC
1162987 GAAACCC
1 GAAACCC
1162994 GAAACCC
1 GAAACCC
1163001 GAAACCC
1 GAAACCC
1163008 GAAA-CC
1 GAAACCC
1163014 GCAAACCC
1 G-AAACCC
1163022 GAGAAATCCCC
1 --GAAA--CCC
1163033 GGAAACCC
1 -GAAACCC
1163041 GGAAA--C
1 -GAAACCC
*
1163047 GACTACCGCGC
1 GA--AAC-C-C
1163058 GGAAAACCC
1 -G-AAACCC
1163067 GAAACCC
1 GAAACCC
1163074 GAAAACCC
1 G-AAACCC
1163082 GAAACCC
1 GAAACCC
*
1163089 GGAAACCG
1 -GAAACCC
*
1163097 GAACCCC
1 GAAACCC
1163104 GAAACCC
1 GAAACCC
1163111 GATAACCC
1 GA-AACCC
* *
1163119 GGACCCC
1 GAAACCC
1163126 GAAACCC
1 GAAACCC
1163133 GAAACCCC
1 GAAA-CCC
1163141 GAAAATCCC
1 G-AAA-CCC
* *
1163150 GAAATCT
1 GAAACCC
1163157 GAAACCC
1 GAAACCC
1163164 GAAATCCC
1 GAAA-CCC
1163172 -AAACCC
1 GAAACCC
1163178 GAATACCC
1 GAA-ACCC
1163186 GTAAACTCC
1 G-AAAC-CC
1163195 GAAACCC
1 GAAACCC
1163202 GAAACCC
1 GAAACCC
1163209 GAAACCC
1 GAAACCC
1163216 GAAATCATCCC
1 G-AA--A-CCC
1163227 GAAATCCCC
1 GAAA--CCC
*
1163236 GTACCACCC
1 G-A-AACCC
1163245 GAAACCC
1 GAAACCC
*
1163252 GGATACCCC
1 -GA-AACCC
1163261 GAAACCC
1 GAAACCC
1163268 GAAACCC
1 GAAACCC
1163275 GAAACCC
1 GAAACCC
1163282 GAAACCC
1 GAAACCC
1163289 GAAA-CC
1 GAAACCC
1163295 GAAAGCCC
1 GAAA-CCC
1163303 G-AA-CC
1 GAAACCC
1163308 GTAAACCC
1 G-AAACCC
1163316 GAAACCC
1 GAAACCC
1163323 GACATACCC
1 GA-A-ACCC
*
1163332 GAGGAAACC
1 GA--AACCC
1163341 GAAAACCCC
1 G-AAA-CCC
1163350 GAAACCTCCC
1 GAAA---CCC
1163360 GAAACCC
1 GAAACCC
*
1163367 GATAA-TC
1 GA-AACCC
1163374 GAAAAACCC
1 G--AAACCC
1163383 GAAACCC
1 GAAACCC
1163390 GAAAACCC
1 G-AAACCC
1163398 GAAACCC
1 GAAACCC
1163405 GAAACCC
1 GAAACCC
*
1163412 GAACCCC
1 GAAACCC
1163419 GAAACCC
1 GAAACCC
*
1163426 AAAACCC
1 GAAACCC
1163433 GAGAAAACCC
1 --G-AAACCC
1163443 G-AACCC
1 GAAACCC
1163449 GGAAACCC
1 -GAAACCC
*
1163457 TAAACCC
1 GAAACCC
*
1163464 G-CACCC
1 GAAACCC
1163470 GAAACCC
1 GAAACCC
1163477 GGAAACCC
1 -GAAACCC
1163485 GAAACCC
1 GAAACCC
1163492 GAAACCC
1 GAAACCC
1163499 GAAA-CC
1 GAAACCC
1163505 GAAAACTCC
1 G-AAAC-CC
1163514 GAAA-CC
1 GAAACCC
1163520 GAAACCC
1 GAAACCC
1163527 GAAACCC
1 GAAACCC
1163534 GAAACCC
1 GAAACCC
1163541 GAAACCC
1 GAAACCC
1163548 GAAAACCC
1 G-AAACCC
1163556 GTAAGAGCCC
1 G-AA-A-CCC
*
1163566 TAAA-CC
1 GAAACCC
1163572 GACAAACCC
1 G--AAACCC
1163581 GAAACCC
1 GAAACCC
1163588 GATAACCC
1 GA-AACCC
1163596 GAAACCC
1 GAAACCC
1163603 GATAACCC
1 GA-AACCC
1163611 GAAAACCC
1 G-AAACCC
1163619 GAAACCC
1 GAAACCC
*
1163626 GATCACCC
1 GA-AACCC
1163634 GAAACCC
1 GAAACCC
1163641 GAAACCCC
1 GAAA-CCC
1163649 G-AACCC
1 GAAACCC
1163655 GGAAACCC
1 -GAAACCC
1163663 GAAACTCC
1 GAAAC-CC
1163671 GAAATCCC
1 GAAA-CCC
*
1163679 CAAACCC
1 GAAACCC
1163686 GAAACCC
1 GAAACCC
*
1163693 GAAAACC
1 GAAACCC
*
1163700 GTGAA---
1 G-AAACCC
1163705 GAAACCC
1 GAAACCC
1163712 GAAACCC
1 GAAACCC
1163719 GAAATCCC
1 GAAA-CCC
1163727 GAAACCC
1 GAAACCC
1163734 GGAAACCC
1 -GAAACCC
1163742 GAAACCC
1 GAAACCC
1163749 GAAACCC
1 GAAACCC
1163756 GAAATCCC
1 GAAA-CCC
*
1163764 GAAAACCT
1 G-AAACCC
*
1163772 TAAACCC
1 GAAACCC
1163779 G-AACTCC
1 GAAAC-CC
1163786 G-AACCC
1 GAAACCC
1163792 GAAACCC
1 GAAACCC
1163799 GAAACCC
1 GAAACCC
*
1163806 GCAACCCC
1 G-AAACCC
1163814 GAAACCC
1 GAAACCC
1163821 GAAACCC
1 GAAACCC
1163828 GAAACCC
1 GAAACCC
1163835 GCAAAACCC
1 G--AAACCC
1163844 GAAACCC
1 GAAACCC
1163851 G-AACCC
1 GAAACCC
1163857 GACAAACCC
1 G--AAACCC
1163866 GAAACCCC
1 GAAA-CCC
1163874 GGAAACCCC
1 -GAAA-CCC
* *
1163883 TAACCCC
1 GAAACCC
*
1163890 GAACCCTC
1 GAAACC-C
*
1163898 GAACCCC
1 GAAACCC
*
1163905 GAACCCC
1 GAAACCC
*
1163912 GAACCCCC
1 GAA-ACCC
1163920 GAAACCC
1 GAAACCC
1163927 GAAACCC
1 GAAACCC
1163934 GAAACCC
1 GAAACCC
1163941 GAAA-CC
1 GAAACCC
*
1163947 GAACCCC
1 GAAACCC
*
1163954 GAACCCC
1 GAAACCC
*
1163961 TAAACCC
1 GAAACCC
1163968 GAAACCC
1 GAAACCC
1163975 GAAACCC
1 GAAACCC
1163982 GAAACCC
1 GAAACCC
* *
1163989 TTAAA-CG
1 -GAAACCC
*
1163996 GAAATCCA
1 GAAA-CCC
1164004 GAAA-CC
1 GAAACCC
1164010 GAAAACCC
1 G-AAACCC
*
1164018 GAAAACAC
1 G-AAACCC
*
1164026 G-AACAC
1 GAAACCC
1164032 GAAACCC
1 GAAACCC
1164039 TGAAAACCC
1 -G-AAACCC
* *
1164048 TAAAACAC
1 -GAAACCC
*
1164056 GAAAACC
1 GAAACCC
*
1164063 GAAACCG
1 GAAACCC
1164070 GAAAACCC
1 G-AAACCC
*
1164078 GAAACCA
1 GAAACCC
1164085 GTAAAACCCC
1 G--AAA-CCC
*
1164095 TAAACCTC
1 GAAACC-C
*
1164103 GAAAAACC
1 G-AAACCC
1164111 G-AACCC
1 GAAACCC
**
1164117 GAAACAA
1 GAAACCC
*
1164124 GAAAACTC
1 G-AAACCC
*
1164132 GAAACAC
1 GAAACCC
*
1164139 GACA-CC
1 GAAACCC
*
1164145 TAAACGCC
1 GAAAC-CC
* *
1164153 TACA-CC
1 GAAACCC
1164159 GAAAACCC
1 G-AAACCC
*
1164167 GAAATCC
1 GAAACCC
*
1164174 TAAACCC
1 GAAACCC
*
1164181 GGAACCC
1 GAAACCC
1164188 GAAAACCC
1 G-AAACCC
1164196 GAAACCC
1 GAAACCC
1164203 G-AACCC
1 GAAACCC
*
1164209 GAAACCT
1 GAAACCC
* *
1164216 TAAACCA
1 GAAACCC
*
1164223 GATACCC
1 GAAACCC
1164230 GAAACCC
1 GAAACCC
1164237 GAAACCC
1 GAAACCC
1164244 TGATAAAACCC
1 -G---AAACCC
1164255 GAAACCC
1 GAAACCC
1164262 GAAACCC
1 GAAACCC
1164269 GGAAACCC
1 -GAAACCC
1164277 GAAACCC
1 GAAACCC
1164284 GAAAACCC
1 G-AAACCC
*
1164292 GATAAACC
1 GA-AACCC
1164300 GAAA-CC
1 GAAACCC
*
1164306 TAAACCC
1 GAAACCC
*
1164313 GAAACCA
1 GAAACCC
* *
1164320 TAAATCC
1 GAAACCC
*
1164327 GAAAACC
1 GAAACCC
*
1164334 TAAACACC
1 GAAAC-CC
* *
1164342 GAACAACA
1 GAA-ACCC
1164350 G-AACCC
1 GAAACCC
1164356 GAAAAACCC
1 G--AAACCC
*
1164365 GAAACACA
1 GAAAC-CC
1164373 GAAA-CC
1 GAAACCC
*
1164379 G-AACCAT
1 GAAACC-C
* *
1164386 AAAACCT
1 GAAACCC
1164393 GAAACCC
1 GAAACCC
*
1164400 TAAACCC
1 GAAACCC
*
1164407 TAAACCC
1 GAAACCC
1164414 GAAACCCC
1 GAAA-CCC
*
1164422 TAAAACCC
1 -GAAACCC
*
1164430 TAAACCC
1 GAAACCC
1164437 GAAACCC
1 GAAACCC
*
1164444 TTAAACCC
1 -GAAACCC
*
1164452 GTTAA-CC
1 G-AAACCC
1164459 GATAACCC
1 GA-AACCC
**
1164467 TTAACCC
1 GAAACCC
*
1164474 TTAATAACCC
1 --GA-AACCC
*
1164484 TAAACCC
1 GAAACCC
* *
1164491 TAAACCT
1 GAAACCC
*
1164498 TAAACCCC
1 GAAA-CCC
**
1164506 TTAACCC
1 GAAACCC
* *
1164513 TAAATCCT
1 GAAA-CCC
*
1164521 TAAACCC
1 GAAACCC
*
1164528 TAAACCC
1 GAAACCC
*
1164535 TAAACCC
1 GAAACCC
*
1164542 TAAACGCC
1 GAAAC-CC
*
1164550 -TAACCC
1 GAAACCC
* *
1164556 TAAAACC
1 GAAACCC
*
1164563 TAAACCTACC
1 GAAA-C--CC
** *
1164573 TTAACCT
1 GAAACCC
* **
1164580 TACCCCTAC
1 GAAACC--C
*
1164589 TAAACCC
1 GAAACCC
*
1164596 TAAA-CC
1 GAAACCC
*
1164602 -TAACCTTAC
1 GAAACC---C
*
1164611 AAAACCC
1 GAAACCC
*
1164618 TAAACCC
1 GAAACCC
*
1164625 TAAACCC
1 GAAACCC
*
1164632 TAAACCC
1 GAAACCC
*
1164639 TAAAACCC
1 -GAAACCC
*
1164647 TAAACCCC
1 GAAA-CCC
*
1164655 TTAAACCC
1 -GAAACCC
1164663 GAAACCC
1 GAAACCC
*
1164670 TAAACCC
1 GAAACCC
*
1164677 TAAACCC
1 GAAACCC
*
1164684 TAAACCC
1 GAAACCC
*
1164691 TAAAACCC
1 -GAAACCC
**
1164699 CTAACCC
1 GAAACCC
**
1164706 TCAACCC
1 GAAACCC
*
1164713 TAAAAACCC
1 --GAAACCC
*
1164722 TAAAACCC
1 -GAAACCC
*
1164730 TAAACCC
1 GAAACCC
*
1164737 TAAACCC
1 GAAACCC
*
1164744 TTAAACCC
1 -GAAACCC
*
1164752 TAAAACCC
1 -GAAACCC
*
1164760 TAAACCC
1 GAAACCC
*
1164767 TAAACCC
1 GAAACCC
*
1164774 -TAACCC
1 GAAACCC
*
1164780 TAAAACCC
1 -GAAACCC
*
1164788 TAAACCC
1 GAAACCC
*
1164795 TTAAACCC
1 -GAAACCC
*
1164803 TAAAACCC
1 -GAAACCC
*
1164811 TAAACCC
1 GAAACCC
*
1164818 TAAACCC
1 GAAACCC
*
1164825 TAAACCC
1 GAAACCC
*
1164832 TAATAAACCC
1 ---GAAACCC
*
1164842 TAAACCCC
1 GAAA-CCC
*
1164850 TTAAACCC
1 -GAAACCC
*
1164858 CAAACCCC
1 GAAA-CCC
*
1164866 AAAACCCACC
1 GAAA--C-CC
*
1164876 AAAACCCC
1 GAAA-CCC
*
1164884 AAAACCC
1 GAAACCC
*
1164891 CAAACCC
1 GAAACCC
*
1164898 CAAACCC
1 GAAACCC
1164905 -AAACCC
1 GAAACCC
*
1164911 AAAACCC
1 GAAACCC
*
1164918 -TAACCC
1 GAAACCC
* *
1164924 TAACCCC
1 GAAACCC
* *
1164931 TAACCCC
1 GAAACCC
*
1164938 TAAACCTC
1 GAAACC-C
1164946 --AACCC
1 GAAACCC
*
1164951 TAAACCCC
1 GAAA-CCC
*
1164959 TAAACCC
1 GAAACCC
*
1164966 -TAACCC
1 GAAACCC
**
1164972 CTAACCC
1 GAAACCC
* *
1164979 TAACCCC
1 GAAACCC
*
1164986 TAAACCC
1 GAAACCC
*
1164993 TAAACCCC
1 GAAA-CCC
*
1165001 TAAACCC
1 GAAACCC
*
1165008 TAAACCC
1 GAAACCC
*
1165015 TAAAACCC
1 -GAAACCC
*
1165023 TAAACCC
1 GAAACCC
*
1165030 TAAACCC
1 GAAACCC
*
1165037 TAAACCC
1 GAAACCC
*
1165044 TAAAACCCC
1 -GAAA-CCC
*
1165053 TAAACCC
1 GAAACCC
*
1165060 TAAACCC
1 GAAACCC
*
1165067 TAAACCC
1 GAAACCC
*
1165074 -TAACCC
1 GAAACCC
*
1165080 TAAAACCC
1 -GAAACCC
*
1165088 -TAACCC
1 GAAACCC
*
1165094 TAAACCC
1 GAAACCC
1165101 GTAAACCC
1 G-AAACCC
*
1165109 TAAACCC
1 GAAACCC
*
1165116 TAAACCC
1 GAAACCC
*
1165123 TAAACCC
1 GAAACCC
*
1165130 TAAACCC
1 GAAACCC
*
1165137 -TAACCC
1 GAAACCC
**
1165143 CTAACCC
1 GAAACCC
*
1165150 CAAACCC
1 GAAACCC
*
1165157 -TAACCC
1 GAAACCC
*
1165163 TAAACCC
1 GAAACCC
*
1165170 TAAAACCC
1 -GAAACCC
*
1165178 -TAACCC
1 GAAACCC
1165184 -ATAACCC
1 GA-AACCC
**
1165191 CTAACCC
1 GAAACCC
**
1165198 -CCACCC
1 GAAACCC
*
1165204 -TAACCC
1 GAAACCC
*
1165210 TAAACCC
1 GAAACCC
1165217 -AAACCC
1 GAAACCC
*
1165223 -TAACCC
1 GAAACCC
*
1165229 TAAACCC
1 GAAACCC
*
1165236 TAAACCC
1 GAAACCC
*
1165243 TAAACCC
1 GAAACCC
*
1165250 TAAACCCC
1 GAAA-CCC
*
1165258 TAAACCC
1 GAAACCC
**
1165265 CTAACCC
1 GAAACCC
*
1165272 TAAAACCC
1 -GAAACCC
*
1165280 TAAACCC
1 GAAACCC
*
1165287 TAAACCC
1 GAAACCC
*
1165294 TAAACCC
1 GAAACCC
*
1165301 TAAACCC
1 GAAACCC
* *
1165308 TAGACCC
1 GAAACCC
* *
1165315 TAGACCC
1 GAAACCC
* *
1165322 TAGACCC
1 GAAACCC
* *
1165329 TAGACCC
1 GAAACCC
* *
1165336 TAGACCC
1 GAAACCC
* *
1165343 TAGACCC
1 GAAACCC
* *
1165350 TAGACCC
1 GAAACCC
* *
1165357 TAGACCC
1 GAAACCC
*
1165364 CAAACCC
1 GAAACCC
*
1165371 CAAACCC
1 GAAACCC
*
1165378 CAAACCC
1 GAAACCC
*
1165385 CAAACCC
1 GAAACCC
*
1165392 CAAACCC
1 GAAACCC
*
1165399 CAAACCC
1 GAAACCC
* *
1165406 CAGACCC
1 GAAACCC
* *
1165413 CAGACCC
1 GAAACCC
* *
1165420 CAGACCC
1 GAAACCC
* *
1165427 CAGACCC
1 GAAACCC
* *
1165434 CAGACCC
1 GAAACCC
* *
1165441 CAGACCC
1 GAAACCC
* *
1165448 CAGACCC
1 GAAACCC
* *
1165455 TAACCCC
1 GAAACCC
* *
1165462 TCAACCCC
1 -GAAACCC
**
1165470 TCAACCC
1 GAAACCC
**
1165477 TCAACCC
1 GAAACCC
**
1165484 TCAACCC
1 GAAACCC
**
1165491 TCAACCC
1 GAAACCC
**
1165498 TCAACCC
1 GAAACCC
**
1165505 TCAACCC
1 GAAACCC
**
1165512 TCAACCC
1 GAAACCC
**
1165519 TCAACCC
1 GAAACCC
**
1165526 TCAACCC
1 GAAACCC
1165533 GAAACCC
1 GAAACCC
1165540 GAAACCC
1 GAAACCC
1165547 GAAACCC
1 GAAACCC
1165554 GAAACCC
1 GAAACCC
1165561 GAAACCC
1 GAAACCC
1165568 GAAACCC
1 GAAACCC
*
1165575 GAACCCC
1 GAAACCC
1165582 G-AACCC
1 GAAACCC
1165588 G-AACCC
1 GAAACCC
1165594 G-AACCC
1 GAAACCC
1165600 G-AACCC
1 GAAACCC
*
1165606 TAAACCC
1 GAAACCC
*
1165613 TAAACCC
1 GAAACCC
*
1165620 TAAACCC
1 GAAACCC
*
1165627 GAACCCC
1 GAAACCC
*
1165634 GAACCCC
1 GAAACCC
*
1165641 GAACCCC
1 GAAACCC
*
1165648 GAACCCC
1 GAAACCC
*
1165655 GAACCCC
1 GAAACCC
*
1165662 GAACCCC
1 GAAACCC
*
1165669 GAACCCC
1 GAAACCC
*
1165676 GAACCCC
1 GAAACCC
1165683 G-AACCC
1 GAAACCC
*
1165689 TAAAACCC
1 -GAAACCC
*
1165697 TAAACCC
1 GAAACCC
1165704 TAATCTTGAA
Statistics
Matches: 9068, Mismatches: 789, Indels: 2470
0.74 0.06 0.20
Matches are distributed among these distances:
4 27 0.00
5 86 0.01
6 753 0.08
7 3935 0.43
8 2531 0.28
9 986 0.11
10 530 0.06
11 180 0.02
12 34 0.00
13 6 0.00
ACGTcount: A:0.40, C:0.40, G:0.14, T:0.06
Consensus pattern (7 bp):
GAAACCC
Found at i:1156307 original size:68 final size:67
Alignment explanation
Indices: 1154618--1164442 Score: 3167
Period size: 68 Copynumber: 141.8 Consensus size: 67
1154608 ACCCGAACCG
* * *
1154618 AAACCGGAAACCCGAAAACCCGAAA-CCGAAACCCG-AAACCCG-AACTCCGAAA-CTCCGACAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAAC-CCGAAACCT-CGAAAC
1154679 CCTG-
64 CC-GA
* * * *
1154683 AAACTCCGA-ACCCCG-AAACCTCGTAAACCCCGACACCCGTAAA-CCGAAAACCGCAACC-C-A
1 AAAC-CCGACA-CCCGAAAACC-CG-AAA-CCCGAAACCCGAAAACCCGAAACCCGAAACCTCGA
**
1154743 GCCCCCGA
61 -AACCCGA
* * * * *
1154751 GAACCCGCAAACCCG-AAACTCCGAAACCCGAAACCCTGGAAACACGTAACCCGAAA---CGAAA
1 AAACCCG-ACACCCGAAAAC-CCGAAACCCGAAACCC-GAAAACCCGAAACCCGAAACCTCGAAA
1154812 CCCGGAA
63 CCC-G-A
* *
1154819 AAACCCTGAAAACCCCGAAACCCCGAAACCCGAAACCCG-AAACCCGAAACCCG-AACC-CGAAA
1 AAACCC-G-ACA-CCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAA
1154881 CCCGGAGA
63 CCC---GA
* * *
1154889 AATACCCGAAACCCGGGAAACCCGAAACCCGGAACCCCG-AAACCCGGAAACCCGAAACC-CGAA
1 AA-ACCCGACACCC-GAAAACCCGAAACCC-GAAACCCGAAAACCC-GAAACCCGAAACCTCGAA
1154952 A-CCGA
62 ACCCGA
* * *
1154957 CAACCCGCCACACCCGAAAAACCCCGAATCCGCCGAAACCTCGAAAACCCGAAACCCTGAAATCT
1 AAACCCG--ACACCCG-AAAA-CCCGAA-AC-CCGAAACC-CGAAAACCCGAAACCC-GAAACCT
*
1155022 CCAAAATTCCCGGA
58 -CGAAA--CCC-GA
*
1155036 AAACCCGACAACCTCG-AAACCCGAATAAACACGAAACCTCCG-AAACCCGAAACCCGAATACCC
1 AAACCCGAC-ACC-CGAAAACCCG---AAACCCGAAA-C-CCGAAAACCCGAAACCCGAA-A-CC
* *
1155099 TTG-AACCCTTA
57 TCGAAACCC-GA
*
1155110 AAA-CCGAAAACCCG-AAACCCGAAACCCGAAA-CCG-AAACCCGGAAACCCGCGGAAACC-CGA
1 AAACCCG-ACACCCGAAAACCCGAAACCCGAAACCCGAAAACCC-GAAA-CC-C-GAAACCTCGA
1155170 AA-CCG-
61 AACCCGA
*
1155175 -AACCCG-CACCCG-AAACCCGAAACCTCGACACCCG-AAACCCGAAAACCCGAAACC-CGAAAC
1 AAACCCGACACCCGAAAACCCGAAACC-CGAAACCCGAAAACCCG-AAACCCGAAACCTCGAAAC
*
1155235 ACG-
64 CCGA
* *
1155238 AAACCCGGGCATAACCCGAAAA---GAAACCCGGAAACCTCGAAACCCCGAAACCCGGATGAAAC
1 AAACCC--G-A-CACCCGAAAACCCGAAACCC-GAAACC-CGAAAACCCGAAACCC----GAAAC
1155300 C-CGAAACCCG-
56 CTCGAAACCCGA
* * * * *
1155310 CAACCCGAACACACG-AAACCCGCAACCCGAAACCCTCAACAACACGAAAACCCGGAGGAAACC-
1 AAACCCG-ACACCCGAAAACCCGAAACCCGAAACCC-GAA-AACCCG-AAACCC----GAAACCT
* *
1155373 CGAAAAACCGC
58 CG-AAACCCGA
* * *
1155384 AACCCCGGATAACCCG-AAACTCCGAAACCCGAAACCTCGAATATCCCGAAACCCGAAA-CTCCG
1 AAACCC-GA-CACCCGAAAAC-CCGAAACCCGAAACC-CGAA-AACCCGAAACCCGAAACCT-CG
1155447 AATACCCCGA
60 AA-A-CCCGA
* * * * *
1155457 AAACCCGAAACCCGAAAACCTCAAAACCCGCTAACCCGAACCCGGAAACCGAAAACCGAACACCT
1 AAACCCGACACCCGAAAACC-CGAAACCCG-AAACCCGAA-----AACCCGAAACCCGAA-ACCT
1155522 CGAAACCCGAA
58 CGAAACCCG-A
*
1155533 AAACTCCGAAACCCG-AAACCCGAAACCCG-AACCCGAAAACCCGTAAACCCGAAACC-CGGAAA
1 AAAC-CCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCG-AAACCCGAAACCTC-GAAA
*
1155595 CCCGG
63 CCCGA
*
1155600 AAACCCG-CAACCCCGGAAACCCGAAACCCGAAA-CCG-AAACCCTGAAACCCGAAACC-CGAAA
1 AAACCCGAC-A-CCCGAAAACCCGAAACCCGAAACCCGAAAACCC-GAAACCCGAAACCTCGAAA
1155661 CCCG-
63 CCCGA
*
1155665 -AACCGGA-ACCCGAAAACCCGAAACCCGAAACCCGAGGGAAAAACCCGGCAAACCCGAAAACC-
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCC----G-AAAACCC-G-AAACCCG-AAACCT
1155727 CGTAAACCCGA
58 CG-AAACCCGA
*
1155738 AAACCCTGAAAATCCCGAAAACCCGGGGAAACCCG-AACCCG-AAACCCGAAACCCGAAACCGAT
1 AAACCC-G-ACA-CCCGAAAACCC---GAAACCCGAAACCCGAAAACCCGAAACCCGAAACC--T
* * *
1155801 -AAAATCCTGT
58 CGAAA-CCCGA
* *
1155811 AAACCCGTAACACCCGAAGAAACCCGAAACCCG-ACCCCGAAATCCCG-AACTCCGAGAAACC-C
1 AAACCCG--ACACCCG-A-AAACCCGAAACCCGAAACCCGAAAACCCGAAAC-CC--GAAACCTC
1155873 GAAAAAACCCG-
59 G---AAACCCGA
*
1155884 AAACCCGA-ACCCGTGAAACCCGAAACCCGGTAAACCCGAAACGAAAACCCCCGAAAAGACCCGA
1 AAACCCGACACCCG-AAAACCCGAAACCC-G-AAA-CC----CGAAAA--CCCG--AA-ACCCGA
* *
1155948 TACC-GGTATAACCCG-
53 AACCTCG-A-AACCCGA
* **
1155963 AAACCCGATAACCCGGTAA-CCGAATACCCGAATA-CCGAATAACTCCGAAACCCGAAACC-CG-
1 AAACCCGA-CACCCGAAAACCCGAA-ACCCGAA-ACCCGAA-AAC-CCGAAACCCGAAACCTCGA
1156024 AACCCG-
61 AACCCGA
*
1156030 AAA-CCG-CAACCCG-AAACCCG-AACCCGAAAATCCCG--AACCCGACATCCCGAAACCTCCGA
1 AAACCCGAC-ACCCGAAAACCCGAAACCCG-AAA-CCCGAAAACCCGA-AACCCGAAACCT-CGA
1156089 AACCCGA
61 AACCCGA
* *
1156096 AAACCCGAAGGTAAACCCG-AAACCCGAAAACCCGCAACCCGAGATAACCCGAAACCCGTAAACC
1 AAACCC----G-ACACCCGAAAACCCG-AAACCCGAAACCCGA-A-AACCCGAAACCCG-AAACC
* *
1156160 -AGAATACCGCTA
57 TCGAA-ACC-CGA
* * * *
1156172 AAACCCGAAACCCTGGAAACCCGAAA---GAAACCCGAATAAACCGATAA-CCGAAAAAC-CGAA
1 AAACCCGACACCC-GAAAACCCGAAACCCGAAACCCGAA-AACCCGA-AACCCG-AAACCTCG-A
*
1156232 AAACCG-
61 AACCCGA
* * *
1156238 AAACTCGA-ACCCGAAAACCCGAAACTCCGAAACCTGCGAGAACCCGAAAACCCGACA-C-CGAA
1 AAACCCGACACCCGAAAACCCGAAAC-CCGAAACC--CGAAAACCCG-AAACCCGAAACCTCGAA
1156300 CACCCGA
62 -ACCCGA
* * * *
1156307 AATATCCCGAAATTGCCCGCAATACCCGAAA-CC----TCCGAAAACCCGAAATCCCGACACC-C
1 AA-A-CCCGACA---CCCG-AAAACCCGAAACCCGAAACCCGAAAACCCGAAA-CCCGAAACCTC
1156366 GAAACCCG-
59 GAAACCCGA
*
1156374 AAACCCGGAAAACCCGAAAACCCGAAACCCGAAACCCG-AAACCCGAAACTCCGAAACC-CGAAA
1 AAACCC-G-ACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAAC-CCGAAACCTCG-AA
1156437 ACCCGA
62 ACCCGA
* * ** * * *
1156443 AAACCCGAATACCCGAGAACCCGAAATCCCGAAAAACCGTCTTAATCCCGAAACCCGAGACC-CA
1 AAACCCG-ACACCCGAAAACCCGAAA-CCCG--AAACC--CGAAAACCCGAAACCCGAAACCTCG
1156507 AAACCCG-
60 AAACCCGA
* * * * * *** *
1156514 -AACCCGAGCAACCCGAAATCCCGAAACCCGATACCCCGACAATCCTAAA-ATTAATCC-CGAAA
1 AAACCCGA-C-ACCCGAAAACCCGAAACCCGA-AACCCGAAAACCCGAAACCCGAAACCTCGAAA
1156576 CCCGA
63 CCCGA
* * * *
1156581 AAA----AC-CCGGGAAACCCGAAAACCCGAAACCCGAAATACCCGAACCCCGAAACCCCGAAAC
1 AAACCCGACACCCGAAAACCCG-AAACCCGAAACCCGAAA-ACCCGAAACCCGAAACCTCGAAAC
*
1156641 GCCGGG
64 -CC-GA
* * * * * * *
1156647 AAA-CCGTAAACCTCGGAATGACCCTGAAA-CCGGACCCCG-CAACCCGTACCCCGAAAACC-CG
1 AAACCCG-ACACC-C-GAA-AACCC-GAAACCCGAAACCCGAAAACCCGAAACCCG-AAACCTCG
1156708 AAACTCTCGA
60 AAAC-C-CGA
* * * *
1156718 AATCCAGAAACCC-AATACGTCCGAAACTCCGAAACCCGGATAAACCCGAAACCCGAAACC-CGA
1 AAACCCGACACCCGAAAAC--CCGAAAC-CCGAAACCC-GA-AAACCCGAAACCCGAAACCTCGA
1156781 AACCCGA
61 AACCCGA
* * *
1156788 CAAACCCGAAACCCGAAAACCTCGAAACTCCGAATCCCCGTAAACCCGGAAAACCCCGAATA-C-
1 -AAACCCGACACCCGAAAACC-CGAAAC-CCGAA-ACCCGAAAACCC-G-AAA-CCCGAA-ACCT
1156851 CGAAACCTCG-
58 CGAAACC-CGA
* * * **
1156861 AATCTTCCGATAATCCAGAAAATACGAAATCCCG-AACCTCG-AAACCCGAAACTCCGTTAAACC
1 AAAC--CCGA-CA-CCCGAAAACCCGAAA-CCCGAAACC-CGAAAACCCGAAAC-CCG--AAACC
1156924 -CTGAAACCCGA
57 TC-GAAACCCGA
*
1156935 TACACCTCGA-A-CCGAAAA-CCGAAAACCCGAAACTCCG-AAACCCGAAAACCCGAAATCC-CG
1 -AAACC-CGACACCCGAAAACCCG-AAACCCGAAAC-CCGAAAACCCG-AAACCCGAAA-CCTCG
*
1156995 AAAACCCGT
60 -AAACCCGA
* * * *
1157004 AAA-CCGAAACCCGGAAAACCCCGAAAACCTCGAACGCCCGAAATATCCCGAAAAACCG-CACC-
1 AAACCCGACACCC-GAAAA-CCCG-AAACC-CGAA-ACCCGAAA-A-CCCG-AAACCCGAAACCT
* *
1157066 CGATACCCGG
58 CGAAACCCGA
** * *
1157076 AAACCCGA-A--TTAGAACCCGAGACCCG--A--C--AAACCCGAAACCCCGAAACC-CGGAAAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAA-CCCGAAACCTC-GAAAC
1157131 CCGCA
64 CCG-A
* * * * *
1157136 ATAAACCGAAACCCGGGAATACCCGAAACCCGTAAACCCG-AAACCCTGAAA-CCGAACCGCTAA
1 A-AACCCGACACCC--GAAAACCCGAAACCCG-AAACCCGAAAACCC-GAAACCCGAAAC-CT-C
* *
1157199 TATAACCCGCTG
59 GA-AACCCG--A
* * *
1157211 AAACCCGAAACCCGTAAACCCGTAAAACCCGAAA---GACAACCGTCGAAACCCGATAACC-CGA
1 AAACCCGACACCCGAAAACCCG--AAACCCGAAACCCGAAAACC--CGAAACCCGA-AACCTCGA
1157272 AACCCGGA
61 AACCC-GA
* * * * *
1157280 ATACCCGAAAAACCTCG-AAACCCGAAACCCGAATCCCCG--AACCCGAAATCCCG-CACCCCG-
1 AAACCCG--ACACC-CGAAAACCCGAAACCCGAA-ACCCGAAAACCCGAAA-CCCGAAACCTCGA
1157340 AACCCGA
61 AACCCGA
* * * *
1157347 ATACCCTGAATACCCG-AAACCCGAAACCCGCAACCCGACAAACCCGAAACTCCGAAACCCGCGA
1 AAACCC-G-ACACCCGAAAACCCGAAACCCGAAACCCGA-AAACCCGAAAC-CCGAAA-CCTCGA
1157411 AACCCGA
61 AACCCGA
* * * **
1157418 ATACCCGGGAAAACCCG-AAACCCGGAAACTCCGCAGCACCCGCTAACCCGAAACCCGAAACC-C
1 AAACCC--G-ACACCCGAAAACCC-GAAAC-CCG-A-AACCCGAAAACCCGAAACCCGAAACCTC
1157481 GGAAACCCG-
59 -GAAACCCGA
* *
1157490 AACCCCGAAACCCG-AAACCCGGAAACCCGTAAACCCG-AAACCCG-AACCCGAAACC-CGAAAC
1 AAACCCGACACCCGAAAACCC-GAAACCCG-AAACCCGAAAACCCGAAACCCGAAACCTCGAAAC
1157551 CGCG-
64 C-CGA
* * * * * *
1157555 AATCCCGA-AACCGAATACCTGAAACCCTGTAAAAACCTCGAAACACCCGAACCCCGATAA-CAC
1 AAACCCGACACCCGAAAACCCGAAACCC-G---AAACC-CGAAA-ACCCGAAACCCGA-AACCTC
1157618 GAAACCCGA
59 GAAACCCGA
* **
1157627 AAACCCG-CAACCCG-AAACCCGAAACCCCGAAACCCTAGGAAACAGGAAAACCCTGAAACC-CG
1 AAACCCGAC-ACCCGAAAACCCGAAA-CCCGAAACCC--GAAAACCCG-AAACCC-GAAACCTCG
*
1157689 AAAAACGCGAA
60 --AAACCCG-A
* * * *
1157700 TAAACCCTGAAACCCGATAACTCTGAAAATCCGAAACCCTGAAAA-CCGAAACCCGAAACC-CGA
1 -AAACCC-GACACCCGAAAAC-CCG-AAACCCGAAACCC-GAAAACCCGAAACCCGAAACCTCGA
*
1157763 AACCCGG
61 AACCCGA
* * *
1157770 AAACCCGTAAACCTCGGGAAACCCGAAACCCGACGAAATCCCGAAATTCCCGAAACTCCGAAA-C
1 AAACCCG-ACACC-C-GAAAACCCGAAA-CC--CGAAA-CCCGAAA-ACCCGAAAC-CCGAAACC
1157834 TCCTGAAAACCCGA
57 T-C-G-AAACCCGA
* *
1157848 TATAATCCTCGAAACCCGGAAAACCCGAAACCCGTGAAACCTCG-AAACCCGCAA-CCG-AACC-
1 -A-AA-CC-CGACACCC-GAAAACCCGAAACCC--GAAACC-CGAAAACCCGAAACCCGAAACCT
1157909 CG-AACCCGA
58 CGAAACCCGA
**
1157918 AAACCCG-CAACCCG-AAACCCGAAACCCGGGAAACCGCGATTACCCGGAAATACTCCAGAAACC
1 AAACCCGAC-ACCCGAAAACCCGAAACCC--GAAACC-CGAAAACCC-G-AA-AC-CC-GAAACC
*
1157981 CCG-AACCCG-
57 TCGAAACCCGA
* * * * *
1157990 AAACCCGAAAACCTCG-GAACCCGAAACACGGAACCCCGAAAACCCGAAACCGGAAAAACC-CGA
1 AAACCCG-ACACC-CGAAAACCCGAAAC-CCGAAACCCGAAAACCCGAAACCCG--AAACCTCGA
1158053 AACCCGA
61 AACCCGA
*
1158060 AAACCCCGAAACCCG-AAA-CCGAAACCCCGCATATAACCCG--AACCTGCGAAACCCGGAAAAC
1 AAA-CCCGACACCCGAAAACCCGAAA-CCCG---A-AACCCGAAAACC--CGAAACCC-G-AAAC
1158121 C-CGTAATATATATCCCTCGGA
56 CTCG----A-A-A--CC-C-GA
* * *
1158142 AAACTCGAAAACCCGAAAGCCCTGAAAACTCCCTGAAACCCTG-AAACCCGAAA-CCGAAAACC-
1 AAACCCG-ACACCCGAAAACCC-G-AAA--CCC-GAAACCC-GAAAACCCGAAACCCG-AAACCT
*
1158204 CGAAACCCTGGG
58 CGAAACCC--GA
*
1158216 AAACCCGA-ACCCG-AAACCTCGGAAACCCTTAGAACCCTGAAAACCCGAAACCCGGAAACC-CG
1 AAACCCGACACCCGAAAACC-C-GAAACCC-GA-AACCC-GAAAACCCGAAACCC-GAAACCTC-
1158278 GAAAACCCGA
59 G-AAACCCGA
* * * * * *
1158288 TGGAAACCCGAAACTCTCGGACACCCGAAACCCGCAA-CCG--AACCTGAAACCCTAAA-C-CGA
1 ---AAACCCGACAC-C-CGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGA
1158348 AA-CCGA
61 AACCCGA
*
1158354 AAACCCG------G-AAACCCGGAACCCCTGAAACCCGAATAACTCCGAAACCCGAATACC-CGG
1 AAACCCGACACCCGAAAACCC-GAAACCC-GAAACCCGAA-AAC-CCGAAACCCGAA-ACCTC--
*
1158411 GTAAACCCGG
59 G-AAACCCGA
* * * *
1158421 AACCCCGCATACCCGATTATACCCGGAACCC-AAACCCG-AAACCCGAAACCCGATAATACCAT-
1 AAACCCG-ACACCCGA--AAACCCGAAACCCGAAACCCGAAAACCCGAAACCCG--AA-ACC-TC
* * *
1158483 G-GA--GGG
59 GAAACCCGA
* ** *
1158489 AAACCCGA-AACCGAGAAA-CCGTCAAACCCGCTACCTCCCG-AAACCGCGAAACCCGCAAA--A
1 AAACCCGACACCCGA-AAACCCG--AAACCCG--A-AACCCGAAAACC-CGAAACCCG-AAACCT
** *
1158549 AAAAACCCGT
58 CGAAACCCGA
* * *
1158559 AAACCCGAAACCC-TAAACCCGATAAACCCGAAACCCG-AAA-CCGAAACCTCGAAACCCCGGCA
1 AAACCCGACACCCGAAAACCCG--AAACCCGAAACCCGAAAACCCGAAACC-CGAAACCTC-G-A
1158621 AACCC-A
61 AACCCGA
* * * * *
1158627 AAA-CCGAAACCAG-AAACCAGAAACTCTCGGAACCCCG-AAACCCGAATACACGAAACGC-CGG
1 AAACCCGACACCCGAAAACCCGAAAC-C-C-GAAACCCGAAAACCCGAA-ACCCGAAAC-CTC-G
1158688 AAACCCGA
60 AAACCCGA
* * * *
1158696 TAACCCGAAACCCG-AAACCCTGAAACCCGAAA-CCG-AAACCCGAAACCGAGAGGAAAC-CGAA
1 AAACCCGACACCCGAAAACCC-GAAACCCGAAACCCGAAAACCCGAAACC-CGA--AACCTCG-A
1158757 AACCCGA
61 AACCCGA
* * * *
1158764 AACCCCGAAACCCGAAAA-CCG-AACCCGAAACCCTAAAACCCGAAACCCGTACAACC-CTAAAA
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCG-A-AACCTC-GAAA
1158826 CCCGTAA
63 CCCG--A
* * *
1158833 AAACCCGTAAACCCGAAACCCGCACCGAAACCCGAAA-CCG-AAACCCGGATAACCC-TAACC-C
1 AAACCCG-ACACCCGAAA---AC-CCGAAACCCGAAACCCGAAAACCC-GA-AACCCGAAACCTC
1158894 GAAA-CCG-
59 GAAACCCGA
* *
1158901 AAACCCGA-ACCCG--AACCCGAAACACG-AACCCGGAAACCCCG-AACCCTGAAACC-CGAAAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCC-GAAAACCCGAAACCC-GAAACCTCGAAAC
1158960 CCGA
64 CCGA
* * *
1158964 AAACCCGAAACCCG-AAACCTCGCAAATCCGGAAACCCGAAACCCCAGGAAACCCTGATAA-CTC
1 AAACCCGACACCCGAAAACC-CG-AAA-CCCGAAACCCGAAAACCC--GAAACCC-GA-AACCT-
1159027 CGAAACCCG-
58 CGAAACCCGA
*
1159036 AAACTCCGAAACCCTGAAAACCCGAAACCCGAAACCCG--AACCCGAATACTCCGAAACC-CGAA
1 AAAC-CCGACACCC-GAAAACCCGAAACCCGAAACCCGAAAACCCGAA-AC-CCGAAACCTCGAA
1159098 ATCCCGA
62 A-CCCGA
* * * * * *
1159105 AAACCTCGAAACCCGAAGACCCG-AA-CCGAAACCTGAAAGCCCGCAATCCCGATAACC-CTATA
1 AAACC-CGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCG-AAACCCGA-AACCTCGA-A
1159167 ATCCCG-
62 A-CCCGA
*
1159173 --A---GTA-ACCGGATAAACCCGAGAACCCGAAACCCGGAAAATCCCGAAACCCGAAACC-CGG
1 AAACCCG-ACACCCGA-AAACCCGA-AACCCGAAACCC-GAAAA-CCCGAAACCCGAAACCTC-G
1159231 AAACTACCGA
60 AAAC--CCGA
*
1159241 TAAACCCGAAACCCGAAAACCCGAAAATCCCGAAACTCTCGGGAAAACCCGCGAAACCCGAATAC
1 -AAACCCGACACCCGAAAACCCG-AAA-CCCGAAAC-C-C--GAAAA-CC-CGAAACCCGAA-AC
1159306 C-CG-AA-CCG-
56 CTCGAAACCCGA
* * * * *
1159314 AACCTCCGAAATCCCGAAAACCCGAAACCTCGAAACCCGAATACTCC-AATTCTC--AA-C-CGA
1 AAAC-CCGACA-CCCGAAAACCCGAAACC-CGAAACCCGAAAAC-CCGAA-ACCCGAAACCTCGA
1159374 AACCCCG-
61 AA-CCCGA
* * * *
1159381 AAACCCGAAACCCGCAAACCTGAAACCCGAAACCCCGAATACTCCGTAATACCCGAATACC-CGG
1 AAACCCGACACCCGAAAACCCGAAACCCGAAA-CCCGAAAAC-CCG-AA-ACCCGAA-ACCTC-G
1159445 ATAACCCGA
60 A-AACCCGA
* * * * * *
1159454 AAACCGGAAACTCCGAAAGA-CCGAAACCCGAAACCCCGAAAA----ACACGCGAACCCTGGAAA
1 AAACCCGACAC-CCGAAA-ACCCGAAACCCGAAA-CCCGAAAACCCGAAACCCGAAACCTCGAAA
1159514 CTCCG-
63 C-CCGA
* *
1159519 AAACCCGAAACTCCGAAAGAAACCGAAATCCCGAAACCCAAGAAATACCCGAAACCCTGGCAAAC
1 AAACCCGACAC-CCG-AA-AACCCGAAA-CCCGAAACCC--GAAA-ACCCGAAACCC--G-AAAC
1159584 C-CGAAACCCGA
56 CTCGAAACCCGA
* * * *
1159595 ACACCCGAAACCCGATAACCCG-AACCCGAATA-CCGAAATCCCGAAACCCGCAAA-CTCCGTAA
1 AAACCCGACACCCGAAAACCCGAAACCCGAA-ACCCGAAAACCCGAAACCCG-AAACCT-CG-AA
1159657 ACCCGA
62 ACCCGA
1159663 AATGACTCCGGGAC-CCCG--AACCCGTGAACACCC-AAACCCG-AAACCCGGAAACCCGAAACC
1 AA--AC-CC--GACACCCGAAAACCC--GAA-ACCCGAAACCCGAAAACCC-GAAACCCGAAACC
1159723 TCGAAACCCG-
57 TCGAAACCCGA
* * * *
1159733 AAACCCGAAACCCGTAAACCCGAATACCCGAAACACG-AAACCGGAATAACCCG-AACC-CGAAA
1 AAACCCGACACCCGAAAACCCGAA-ACCCGAAACCCGAAAACCCG-A-AACCCGAAACCTCGAAA
1159795 CTCCGAA
63 C-CCG-A
* *
1159802 AAACCCGAC-CCGGAAATCCCGAATACCCG--ACCCGTGGAAAACCCGAAACCCCGAAACC-CGA
1 AAACCCGACACCCGAAAACCCGAA-ACCCGAAACCC---GAAAACCCGAAA-CCCGAAACCTC--
1159863 TGTAAACCC--
59 -G-AAACCCGA
* * * *
1159872 AAA-CCGAAAACCCG-AAACCCGAAACCCGAAACCCGATAAACCCGAAAACCGCAACC-CGCAAC
1 AAACCCG-ACACCCGAAAACCCGAAACCCGAAACCCGA-AAACCCGAAACCCGAAACCTCGAAAC
1159934 CCG-
64 CCGA
* * *
1159937 AAACCCGGAAAACCCG-CAA-CCGAAACCCGGAGTAACCCG-AAACCAGAAACCCG-AA-C-CGA
1 AAACCC-G-ACACCCGAAAACCCGAAACCC-GA--AACCCGAAAACCCGAAACCCGAAACCTCGA
*
1159996 AACCTG-
61 AACCCGA
* * * * *
1160002 AAACCCGAAACCCG-AATCCCGAAACCCGCAACCC-TAACCTCCGAAACCCGAAACC-CGAAACC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAAC-CCGAAACCCGAAACCTCGAAACC
1160064 CGA
65 CGA
* * *
1160067 TTAAACCCGAAACCCGGAAACCCGAAAAACCCGTGAAAACCCG-AAACCCGTAAACCCGCGAACC
1 --AAACCCGACACCCGAAAACCCG--AAACCC--G-AAACCCGAAAACCCG-AAACCCG-AAACC
1160131 -CGAAACCCGTA
57 TCGAAACCCG-A
* * * * * *
1160142 ATACTCCGCCACCCTGGACACCCCTTTG-AACCCGAAACCCGCAAACCCGAAACCCTTAAACC-C
1 AAAC-CCGACACCC--GAAAACCC---GAAACCCGAAACCCGAAAACCCGAAACCC-GAAACCTC
1160205 GAAACCCG-
59 GAAACCCGA
* * * *
1160213 AAACCTCTTAAACCCG-AAAGCCGACACCCGATTAATCCCG-AAA-CCGAAACCCGAAACC-CGG
1 AAACC-C-GACACCCGAAAACCCGAAACCCGA--AA-CCCGAAAACCCGAAACCCGAAACCTC-G
1160274 AAA--CG-
60 AAACCCGA
* * * *
1160279 AAACCCGAAACCCGAAGAAACCGGAAATCCCGGAAAACC-AGAACCCCGAAACCCGGAATACCTC
1 AAACCCGACACCCG-A-AAACCCGAAA-CCC-GAAACCCGA-AAACCCGAAACCC-GAA-ACCTC
1160343 GAAAAGCCTCG-
59 G-AAA-CC-CGA
* * *
1160354 AAACCCGGAAACCCG--AACCCGAAAACTCCGAAA-CCG-AAA-CCGAAACCCGAAACCCCTAAA
1 AAACCC-GACACCCGAAAACCCG-AAAC-CCGAAACCCGAAAACCCGAAACCCGAAACCTC-GAA
1160414 ACCCG-
62 ACCCGA
* ** * * *
1160419 AAACCCGAAACCCG-AAACCCTGTAAATACGAAACCGGATGAACCCGAGAACCCGAAACCTGGGG
1 AAACCCGACACCCGAAAACCC-G-AAACCCGAAACCCGA-AAACCCGA-AACCCGAAACCT--CG
1160483 AAACCCGA
60 AAACCCGA
* * *
1160491 TAA-CCGAAACCCG-AAACCCG-AACCCGAAACCCG-AATCCCGAAA-CCGAAA-C-CGAAA-CC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAACCC
1160548 G-
66 GA
* * * *
1160549 AAACCCGAAACCCCGATAACCCGGAATCCAGTAAATTCCCCGGAAAACCCGGAAAACCCGAAACC
1 AAACCCGACA-CCCGAAAACCC-GAAACCCG-AAA---CCC-GAAAACCC-G-AAACCCGAAACC
1160614 TCGAAACCC--
57 TCGAAACCCGA
* * *
1160623 AAACCCTCAAACCCGAGAAACCCGAAA-CCGAAACCCG-AAACCCGATAACCCGGAAACCCCGAA
1 AAACCC-GACACCCGA-AAACCCGAAACCCGAAACCCGAAAACCCGA-AACCC-GAAACCTCGAA
*
1160686 ACCGGA
62 ACCCGA
* * * *
1160692 CAACCCGAGAACCCGATCAACCCGAAACCCGAAAACC--AAACCCGATAACTCCGAAACC-CGAT
1 AAACCCGA-CACCCGA-AAACCCGAAACCCGAAACCCGAAAACCCGA-AAC-CCGAAACCTCGA-
1160754 AACCCG-
61 AACCCGA
* * *
1160760 AAACCCGAAAACCCGAATACCCGGGGAAACCCCGAAACCTCG-AAACCCGAAACTCGAATACCGT
1 AAACCCG-ACACCCGAAAACCC---GAAA-CCCGAAACC-CGAAAACCCGAAACCCGAA-ACC-T
*
1160824 CGAAACCCGT
58 CGAAACCCGA
* * * * * *
1160834 AAACCAGATAACCCG-AAACCCGAACAAACCCGTACCCCGGGAAACCCTGAAACCTTCGAAAACT
1 AAACCCGA-CACCCGAAAACCCG---AAACCCGAAACCC-GAAAACCC-GAAACC--CGAAACCT
1160898 CCGGATAAACCCGTAA
58 -C-G--AAACCCG--A
* * *
1160914 AAACCCGGGATAAACCCG-ATA-CCGATTTAAACCCG-AACCCGAAAACCCTGAAGAGAAACCTC
1 AAACCC--G--ACACCCGAAAACCCG----AAACCCGAAACCCGAAAACCC----GA-AACCC--
1160976 G-AACCTCAGAAACTCCG-
51 GAAACCTC-GAAAC-CCGA
* *
1160993 AAACCCGAAACCCGAAAACCCG-AACCCTAAACCTC--AAACCCGAAACCCGAAACC-CGGAAA-
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACC-CGAAAACCCGAAACCCGAAACCTC-GAAAC
1161053 CCGA
64 CCGA
* * *
1161057 CAATCCCGAAACCCGAAAAACCCGAAATAAACTCGAAAACCCG--AACCCGATAACCCGAAACC-
1 -AAACCCGACACCCG-AAAACCCG----AAACCCG-AAACCCGAAAACCCGA-AACCCGAAACCT
1161119 CGAAACCCGA
58 CGAAACCCGA
*
1161129 AAACCCGACTGAAACACCG-ACACTCCGAAACCCGAAACCCGAAAACCCGAATACCCGACAACCT
1 AAACCCGAC----AC-CCGAAAAC-CCGAAACCCGAAACCCGAAAACCCGAA-ACCCGA-AACCT
1161193 -GAAACCCGA
58 CGAAACCCGA
*
1161202 AAACCCGA-ACCCG-AAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCCGAACGAAA
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAA-CC--TCGAAA
1161265 CCCGA
63 CCCGA
* * * * * *
1161270 AACCCCGAAACCCG-AAACCCGAACACCCGAAATCCGATAACCCGAAATCCTGAGAAACCCGCGG
1 AAACCCGACACCCGAAAACCCGAA-ACCCGAAACCCGAAAACCCGAAA-CC--CGAAA-CCTC-G
1161334 AAATACCCTAGA
60 -AA-ACCC--GA
* * *
1161346 AAACCCGAAACCCG-AAACGCTGAAACCCGACACCCG--AA-CCGATAACCCGAAAACC-CGAAA
1 AAACCCGACACCCGAAAAC-CCGAAACCCGAAACCCGAAAACCCGA-AACCCG-AAACCTCGAAA
1161406 CCCGA
63 CCCGA
* * *
1161411 GAAACCCGATAACCCGAAAACCCGAAACCCGAAACCCG-AAACCCGATAAACCG-AACCCCGAAA
1 -AAACCCGA-CACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGA-AACCCGAAACCTCGAAA
1161474 CCCG-
63 CCCGA
* * * *
1161478 AAACCCGAAACCAGAACACTCGAAACCCGGAAACCCG-AAA-CCGAAACCCGAATACC-CGTAAA
1 AAACCCGACACCCGAAAACCCGAAACCC-GAAACCCGAAAACCCGAAACCCGAA-ACCTCG--AA
1161540 ACCCGAA
62 ACCCG-A
* * *
1161547 AAATGCCCGAAACCCG-AAA-CCGAAA-CCGAAACCCG-AAACCCGAAACCCGAAACCCCGAGAC
1 AAA--CCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAAC
*
1161608 CCTA
64 CCGA
* * *
1161612 AACCCCGAAAACCTCGGAGAAACCCGAAACCGGAAACCCG-AAACCCGAAACCCGAAACC-C-AA
1 AAACCCG-ACACC-C-GA-AAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAA
1161674 A-CCGA
62 ACCCGA
*
1161679 GAATGCACCCGAAACCCG-AAACCCGAGAACCCGAAACCCGAAAACCCGGGAAAACCCGAAACC-
1 -AA---ACCCGACACCCGAAAACCCGA-AACCCGAAACCCGAAAACCC--G-AAACCCGAAACCT
1161742 CGAAACCCGA
58 CGAAACCCGA
* *
1161752 GAA-CCGAAATCCTCG-AAACCCGAAATCCTCGACAACCCG-AAA-CCG-AACCCGAAACC-CGG
1 AAACCCGACA-CC-CGAAAACCCGAAA-CC-CGA-AACCCGAAAACCCGAAACCCGAAACCTC-G
*
1161811 AAACCCGG
60 AAACCCGA
*
1161819 AAACCCGAAATCCCGAAAACCCG-AA--CGAAACCGCG-AAACCCGACAACCCCGGAAAACC-CG
1 AAACCCGACA-CCCGAAAACCCGAAACCCGAAACC-CGAAAACCCGA-AA-CCC-G-AAACCTCG
1161879 AAACCCGA
60 AAACCCGA
* * ** * * * *
1161887 ACA-CC-AAACCCGTGAACCCGAAAACCGAAACCCG-AAA-CCGAAATCCGAAACCCCCGCATAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAA-CCTCG-A-AA
1161948 CCCG-
63 CCCGA
* * *
1161952 AAACCCGAAACCCG-AAACCCGAAACCCGAAAACCCGAAACCCCGAACCCCGAAA-CTCCGATAA
1 AAACCCGACACCCGAAAACCCGAAACCCG-AAACCCGAAAACCCGAAACCCGAAACCT-CGA-AA
1162015 CCCGGA
63 CCC-GA
* * * * *
1162021 AAACCTATGGTCACCC-----CCTGAAAACCCGTAAACTCGTAAACCCG-AA-CCGAAAACC-CG
1 AAACC---CGACACCCGAAAACCCG-AAACCCG-AAACCCGAAAACCCGAAACCCG-AAACCTCG
1162078 AAAACCCG-
60 -AAACCCGA
* *
1162086 AAACCCGAAACCCG-AAACCCTGAAACCCGAAACCCG-AAACCCGATAACCC-TAACC-CGTAAA
1 AAACCCGACACCCGAAAACCC-GAAACCCGAAACCCGAAAACCCGA-AACCCGAAACCTCG-AAA
1162147 CCCGA
63 CCCGA
*
1162152 AAACCCGACACCCG-AAACCCG-AACCCGAAACCCG-AACCCCGAAACCCGAGAA-C-CGAAAAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGA-AACCTCG-AAA-
1162212 CCCGA
63 CCCGA
*
1162217 ATACCC-A-ACCCTGATCAAACCCGAAACCCGAAACCCG-AAACCTCGAAACCCGGAAACC-CGA
1 AAACCCGACACCC-GA--AAACCCGAAACCCGAAACCCGAAAACC-CGAAACCC-GAAACCTCGA
1162278 AACCCG-
61 AACCCGA
* *
1162284 -AACTCCGATACCCGAACACCCGAAA-CCGAAACCC-AAAACCCGCGAAACCCGAAAACC-CGTA
1 AAAC-CCGACACCCGAAAACCCGAAACCCGAAACCCGAAAA-CC-CGAAACCCG-AAACCTCG-A
1162345 AACCCGA
61 AACCCGA
** * * **
1162352 ACTCCTGAAACCCGAAAACCTCGAAACCCGAAACCCGAAAACCCGTAAAACCCGAGAACCAGGGA
1 AAACCCGACACCCGAAAACC-CGAAACCCGAAACCCGAAAACCCG--AAACCCGA-AACC-TCGA
1162417 AACCCG-
61 AACCCGA
*
1162423 AAACCCGAAACCCG-AAA-CCGAAACCCGAAACCCG-AAACCCGAAACCCGAAACC-CGAAACCC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAACCC
1162484 GA
66 GA
* * * *
1162486 GTAACCCCTGAAACCTCGAAATCCCGAAACCCCGTGAATACTCCGGAAACCCGAACACCCGAAAC
1 --AAACCC-GACACC-CGAAAACCCGAAA-CCC--GAA-AC-CCGAAAACCCGAA-ACCCGAAAC
1162551 C-CGAAACCCG-
56 CTCGAAACCCGA
* * *
1162561 AAACCCGAATACCGGAAAACCCGAAAACCCGAAACCCCG-AAACCCGGAACCCGAAACC-CGAAA
1 AAACCCG-ACACCCGAAAACCCG-AAACCCGAAA-CCCGAAAACCCGAAACCCGAAACCTCGAAA
1162624 CCCGA
63 CCCGA
* * * * * *
1162629 AAA-CCGAAACCCGAATACCCTGCAACCCGCTAACCCG-AATCCCTG--A---GAAACCTAGAAA
1 AAACCCGACACCCGAAAACCC-GAAACCCG-AAACCCGAAAACCC-GAAACCCGAAACCTCGAAA
1162687 CCCGA
63 CCCGA
* *
1162692 AAA-CCG-CACCTC--AAACCCGAAACCGGAAA-CCG-AAACTCTCGTAAAAACCGAAAAAAACC
1 AAACCCGACACC-CGAAAACCCGAAACCCGAAACCCGAAAAC-C-CG--AAACCCG----AAACC
1162751 -CGAAACCCGA
57 TCGAAACCCGA
* * * * **
1162761 AAACCCGAAACCCGAAAACCCGAAACACGAAATACCCGGAAACCCTAAACCCGAAA-C-CGACCC
1 AAACCCGACACCCGAAAACCCGAAACCCG-AA-ACCCGAAAACCCGAAACCCGAAACCTCGAAAC
*
1162824 CCGT
64 CCGA
* * * * *
1162828 AAACCGTTCGAAACCC-TAAACCCGAACCCCGAAACCCGGAAACCTGAAATACTCCGAAACC-CG
1 AAACC---CGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCG-AA-AC-CCGAAACCTCG
1162891 AAAACCCG-
60 -AAACCCGA
* * *
1162899 AAACCCGGTAAAACCCGAGATACCCGGAACCCGGAAACTCCCTGGAAAACCCGAAAACCCCGAAA
1 AAACCC-G--ACACCCGA-AAACCCGAAACCC-GAAA--CCC--GAAAACCCG-AAA-CCCGAAA
1162964 -C-CGAAACCCG-
55 CCTCGAAACCCGA
* *
1162974 -AACCCGCAAACCCG-AAACCCGAAACCCGAAACCCG-AAA-CCGCAAACCCGAGAAATCCCCGG
1 AAACCCG-ACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCG-AAACCC--GAAA-CCTC-G
*
1163035 AAACCCGG
60 AAACCCGA
* *
1163043 AAA--CGACTACCGCGCGGAAAACCCGAAACCCGAAAACCCG-AAACCCGGAAA-CCGGAACCCC
1 AAACCCGAC-A-C-C-C-GAAAACCCGAAACCCG-AAACCCGAAAACCC-GAAACCCGAAACCTC
1163104 GAAACCCGA
59 GAAACCCGA
* * *
1163113 TAACCCGGAC-CCCG-AAACCCGAAACCCCGAAAATCCCG-AAATCTGAAACCCGAAATCC-C-A
1 AAACCC-GACACCCGAAAACCCGAAA-CCCG-AAA-CCCGAAAACCCGAAACCCGAAA-CCTCGA
1163173 AACCCGA
61 AACCCGA
* * *
1163180 ATACCCGTAAACTCCG-AAACCCGAAACCCGAAACCCGAAATCATCCCGAAATCCCCGTACCACC
1 AAACCCG-ACAC-CCGAAAACCCGAAACCCGAAACCCGAAA--A-CCCGAAA--CCCG-A-AACC
1163244 -CGAAACCCGGA
57 TCGAAACCC-GA
* * *
1163255 TACCCCGAAACCCG-AAACCCGAAACCCGAAACCCG-AAA-CCGAAAGCCCG-AA-C-CGTAAAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAA-CCCGAAACCTCG-AAAC
1163314 CCG-
64 CCGA
*
1163317 AAACCCGACATACCCGAGGAAA-CCGAAAACCCCGAAACCTCCCG-AAACCCGATAA-TCGAAAA
1 AAACCCGAC--ACCCGA--AAACCCG-AAA-CCCGAAA---CCCGAAAACCCGA-AACCCG--AA
1163379 ACC-CGAAACCCGA
54 ACCTCGAAACCCGA
* *
1163392 AAACCCGAAACCCG-AAACCCGAACCCCGAAACCC-AAAACCCGAGAAAACCCG-AACC-CGGAA
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCC--G-AAACCCGAAACCTC-GAA
*
1163453 ACCC-T
62 ACCCGA
*
1163458 AAACCCG-CACCCG-AAACCCGGAAACCCGAAACCCG-AAACCCGAAA-CCGAAAACTCCGAAA-
1 AAACCCGACACCCGAAAACCC-GAAACCCGAAACCCGAAAACCCGAAACCCGAAACCT-CGAAAC
1163518 CCG-
64 CCGA
* * *
1163521 AAACCCGAAACCCG-AAACCCGAAACCCGAAAACCCGTAAGAGCCCTAAA-CCGACAAACC-CGA
1 AAACCCGACACCCGAAAACCCGAAACCCG-AAACCCG-AA-AACCCGAAACCCG--AAACCTCGA
1163583 AACCCGA
61 AACCCGA
* * * ** *
1163590 TAACCCGAAACCCGATAACCCGAAAACCCGAAACCCGATCACCCGAAACCCGAAACCCCG-AACC
1 AAACCCGACACCCGAAAACCCG-AAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAACC
*
1163654 CGG
65 CGA
* * * *
1163657 AAACCCGAAACTCCGAAATCCCCAAACCCGAAACCCGAAAACCGTGAAGAAACCCGAAACC-CGA
1 AAACCCGACAC-CCGAAAACCCGAAACCCGAAACCCGAAAACC----CGAAACCCGAAACCTCGA
1163721 AATCCCG-
61 AA-CCCGA
* **
1163728 AAACCCGGAAACCCG-AAACCCGAAACCCGAAATCCCGAAAACCTTAAACCCG-AA-CTCCG-AA
1 AAACCC-GACACCCGAAAACCCGAAACCCGAAA-CCCGAAAACCCGAAACCCGAAACCT-CGAAA
1163789 CCCG-
63 CCCGA
* * *
1163793 AAACCCGAAACCCGCAACCCCGAAACCCGAAACCCG-AAACCCGCAAAACCCGAAACC-CG-AAC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCG--AAACCCGAAACCTCGAAAC
1163855 CCGA
64 CCGA
* * * * * * * * *
1163859 CAAACCCGAAACCCCGGAAACCCCTAACCCCGAACCCTCG-AACCCCGAACCCCGAACCCCCGAA
1 -AAACCCGACA-CCC-GAAAACCCGAAACCCGAAACC-CGAAAACCCGAAACCCGAAACCTCGAA
1163923 ACCCG-
62 ACCCGA
* * **
1163928 AAACCCGAAACCCG-AAA-CCGAACCCCG-AACCCCTAAACCCGAAACCCGAAACC-CGAAACCC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAACCC
**
1163989 TT
66 GA
* * * * * *
1163991 AAA-CGGAAATCC-AGAAA-CCGAAAACCCGAAAACACG--AACACGAAACCCTGAAAACC-CTA
1 AAACCCGACACCCGA-AAACCCG-AAACCCG-AAACCCGAAAACCCGAAACCC-G-AAACCTC-G
*
1164050 AAACACGA
60 AAACCCGA
* * * ** *
1164058 AAA-CCGAAACCGGAAAACCCGAAACCAGTAAAACCCCTAAACCTCGAAAAACCG-AACC-CGAA
1 AAACCCGACACCCGAAAACCCGAAACCCG--AAACCCGAAAACC-CG-AAACCCGAAACCTCGAA
**
1164120 ACAAGA
62 ACCCGA
* * * * * * * * * *
1164126 AAACTCGAAACACG-ACA-CCTAAACGCCTACA-CCGAAAACCCGAAATCCTAAACC-CGGAACC
1 AAACCCGACACCCGAAAACCCGAAAC-CCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAACC
1164187 CGA
65 CGA
* ** * *
1164190 AAACCCGAAACCCG--AACCCGAAACCTTAAACCAG-ATACCCGAAACCCGAAACC-CTGATAAA
1 AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTC-G---AA
1164251 ACCCG-
62 ACCCGA
* * *
1164256 AAACCCGAAACCCGGAAACCCGAAACCCGAAAACCCGATAAA-CCGAAA-CCTAAACC-CGAAA-
1 AAACCCGACACCCGAAAACCCGAAACCCG-AAACCCGA-AAACCCGAAACCCGAAACCTCGAAAC
1164317 CC-A
64 CCGA
* * * * * * *
1164320 TAAATCCGAAAACC-TAAACACCGAACAACAG-AACCCGAAAAACCCGAAACACAGAAA-C-CG-
1 -AAACCCGACACCCGAAAAC-CCGAA-ACCCGAAACCCG-AAAACCCGAAAC-CCGAAACCTCGA
**
1164380 AACCATA
61 AACCCGA
* * * * * *
1164387 AAACCTGAAACCC-TAAACCCTAAACCCGAAACCCCTAAAACCCTAAACCCGAAACC
1 AAACCCGACACCCGAAAACCCGAAACCCGAAA-CCCGAAAACCCGAAACCCGAAACC
1164443 CTTAAACCCG
Statistics
Matches: 7765, Mismatches: 815, Indels: 2360
0.71 0.07 0.22
Matches are distributed among these distances:
54 5 0.00
55 7 0.00
56 6 0.00
57 10 0.00
58 13 0.00
59 29 0.00
60 30 0.00
61 67 0.01
62 141 0.02
63 221 0.03
64 349 0.04
65 447 0.06
66 608 0.08
67 775 0.10
68 826 0.11
69 726 0.09
70 585 0.08
71 573 0.07
72 576 0.07
73 525 0.07
74 387 0.05
75 206 0.03
76 232 0.03
77 110 0.01
78 76 0.01
79 62 0.01
80 40 0.01
81 35 0.00
82 37 0.00
83 24 0.00
84 19 0.00
85 7 0.00
86 7 0.00
87 3 0.00
88 1 0.00
ACGTcount: A:0.40, C:0.39, G:0.15, T:0.06
Consensus pattern (67 bp):
AAACCCGACACCCGAAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCGAAACCTCGAAACCC
GA
Found at i:1156351 original size:46 final size:39
Alignment explanation
Indices: 1154615--1163988 Score: 2470
Period size: 37 Copynumber: 242.6 Consensus size: 39
1154605 GAAACCCGAA
* *
1154615 CCGAAACCGGAAACCCGAAAACCCG-AAA-CCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1154650 CCGAAACCCG-AACTCCGAAACTCCG-ACACCCTGAAACT-
1 CCGAAACCCGAAAC-CCGAAACCCCGAAAACCC-GAAAATC
* * *
1154688 CCGAACCCCGAAACCTCGTAAACCCCG-ACACCCGTAAA--
1 CCGAAACCCGAAACC-CG-AAACCCCGAAAACCCGAAAATC
* * ** * *
1154726 CCGAAAACCGCAACCC-AGCCCCCGAGAACCCGCAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * * *
1154763 CCGAAACTCCGAAACCCGAAACCCTGGAAACACG-TAA-C
1 CCGAAAC-CCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1154801 CCGAAA--CGAAACCCGGAAAAACCCTGAAAACCCCG-AAACC
1 CCGAAACCCGAAACCC-G--AAACCCCGAAAA-CCCGAAAATC
1154841 CCGAAACCCGAAACCCGAAA-CCCG-AAACCCG--AA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1154875 CCGAAACCCGGAGAAATACCCGAAACCCGGGAAACCCG-AAA-C
1 CCGAAACCC---G-AA-ACCCGAAACCCCGAAAACCCGAAAATC
*
1154917 CCGGAACCCCGAAACCCGGAAA-CCCG-AAACCCG-AAA--
1 CC-GAAACCCGAAACCC-GAAACCCCGAAAACCCGAAAATC
* **
1154953 CCGACAACCCGCCACACCCGAAAAACCCCGAATCCGCCG-AAA-C
1 CCGA-AACCCG--AAACCCG--AAACCCCGAAAAC-CCGAAAATC
*
1154996 CTCGAAAACCCGAAACCCTGAAATCTCC-AAAATTCCCGGAAAA-C
1 C-CG-AAACCCGAAACCC-GAAA-CCCCGAAAA--CCC-GAAAATC
* * *
1155040 CCGACAACCTCGAAACCCGAATAAACACGAAACCTCCG-AAA-C
1 CCGA-AACC-CGAAACCCG-A-AACCCCGAAAAC-CCGAAAATC
**
1155082 CCGAAACCCGAATACCCTTG-AACCCTTAAAA-CCGAAAA-C
1 CCGAAACCCGAA-ACCC--GAAACCCCGAAAACCCGAAAATC
* *
1155121 CCGAAACCCGAAACCCGAAA--CCG-AAACCCGGAAACC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1155157 CGCGGAAACCCGAAA-CCG-AA-CCCG--CACCCG-AAA-C
1 C-C-GAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1155191 CCGAAACCTCGACACCCGAAA-CCCGAAAACCCG-AAA-C
1 CCGAAACC-CGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1155228 CCGAAACACGAAACCCGGGCATAA-CCCGAAAA---G-AAA-C
1 CCGAAACCCGAAACCC--G-A-AACCCCGAAAACCCGAAAATC
*
1155265 CCGGAAACCTCGAAACCCCGAAACCCGGATGAAACCCG-AAA-C
1 CC-GAAACC-CGAAA-CCCGAAACCCCGA--AAACCCGAAAATC
* * * *
1155307 CCGCAACCCGAACACACGAAA-CCCG-CAACCCG-AAACC
1 CCGAAACCCGAA-ACCCGAAACCCCGAAAACCCGAAAATC
* * * * * *
1155344 CTCAACAACACGAAAACCCGGAGGAAACCCGAAAAACCG-CAACC
1 C-CGA-AACCCG-AAACCC-GA--AACCCCGAAAACCCGAAAATC
*
1155388 CCGGATAACCCGAAACTCCGAAA-CCCG-AAACCTCGAATATC
1 CC-GA-AACCCGAAAC-CCGAAACCCCGAAAACC-CGAAAATC
1155429 CCGAAACCCGAAACTCCGAATACCCCGAAAACCCG-AAA-C
1 CCGAAACCCGAAAC-CCGAA-ACCCCGAAAACCCGAAAATC
* * *
1155468 CCGAAAACCTCAAAACCCGCTAA-CCCG--AACCCGGAAA--
1 CCG-AAACC-CGAAACCCG-AAACCCCGAAAACCCGAAAATC
*
1155505 CCGAAAACCGAACACCTCGAAA-CCCGAAAAACTCCG-AAA-C
1 CCGAAACCCGAA-ACC-CGAAACCCCG-AAAAC-CCGAAAATC
*
1155545 CCGAAACCCGAAACCCG-AA-CCCGAAAACCCGTAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1155581 CCGAAACCCGGAAACCCGGAAA-CCCGCAACCCCGGAAA-C
1 CCGAAACCC-GAAACCC-GAAACCCCGAAAACCCGAAAATC
*
1155620 CCGAAACCCGAAA-CCGAAACCCTG-AAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1155655 CCGAAACCCG-AA-CCGGAA-CCCGAAAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
***** * *
1155689 CCGAAACCCG-AGGGAAAAACCCGGCAAACCCGAAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1155726 CCGTAAACCCGAAAACCCTGAAAATCCCGAAAACCCGGGGAAA-C
1 CCG-AAACCCG-AAACCC-G-AAACCCCGAAAACCC--GAAAATC
1155770 CCG-AACCCGAAACCCGAAA-CCCG-AAA-CCGATAAAATC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCG--AAAATC
*
1155807 CTGTAAACCCGTAACACCCG-AA----G-AAACCCG-AAA-C
1 CCG-AAACCCG-AA-ACCCGAAACCCCGAAAACCCGAAAATC
* * *
1155841 CCG-ACCCCGAAATCCCG-AACTCCGAGAAACCCGAAAAAAC
1 CCGAAACCCGAAA-CCCGAAACCCCGA-AAACCCG-AAAATC
*
1155881 CCGAAACCCG-AACCCGTGAAA-CCCG-AAACCCGGTAAA-C
1 CCGAAACCCGAAACCC--GAAACCCCGAAAACCC-GAAAATC
* * * *
1155919 CCGAAA--CGAAAACCCCCGAAAAGACCCG-ATACCGGTATAA-C
1 CCGAAACCCG-AAA--CCCG-AAA-CCCCGAAAACCCG-AAAATC
* * *
1155960 CCGAAACCCGATAACCCGGTAA--CCGAATACCCG--AATA
1 CCGAAACCCGA-AACCC-GAAACCCCGAAAACCCGAAAATC
1155997 CCGAATAACTCCGAAACCCGAAA-CCCG--AACCCG-AAA--
1 CCG-A-AAC-CCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1156033 CCGCAACCCGAAACCCG-AA-CCCGAAAATCCCG--AA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAA-CCCGAAAATC
* *
1156068 CCGACATCCCGAAACCTCCGAAA-CCCGAAAACCCGAAGGTAAAC
1 CCGA-AACCCGAAA-C-CCGAAACCCCGAAAACCCGAA---AATC
*
1156112 CCGAAACCCGAAAACCCGCAA-CCCGAGATAACCCG-AAA-C
1 CCGAAACCCG-AAACCCGAAACCCCGA-A-AACCCGAAAATC
* * * *
1156151 CCGTAAACCAGAATACCGCTAAAACCCG-AAACCCTGGAAA-C
1 CCG-AAACCCGAA-ACC-CGAAACCCCGAAAACCC-GAAAATC
** * *
1156192 CCGAAA---GAAACCCGAATAAACCGATAA-CCGAAAA-A
1 CCGAAACCCGAAACCCGAA-ACCCCGAAAACCCGAAAATC
* * *
1156227 CCGAAAAACCGAAACTCG-AA-CCCGAAAACCCGAAACT-
1 CCG-AAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1156264 CCGAAACCTGCGAGAACCCGAAAACCCGACACCGAACACCCGAAATATC
1 CCGAAACC--CGA-AACCCG-AAA--C--C-CCGAAAACCCGAAA-ATC
1156313 CCGAAATTGCCCGCAATACCCGAAACCTCCGAAAACCCG-AAATC
1 CCGAAA---CCCG-AA-ACCCGAAACC-CCGAAAACCCGAAAATC
* *
1156357 CCGACACCCGAAACCCGAAACCCGGAAAACCCGAAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1156395 CCGAAACCCGAAACCCGAAA-CCCG-AAACTCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAAC-CCGAAAATC
*
1156431 CCGAAAACCCGAAAACCCGAATA-CCCGAGAACCCG-AAATC
1 CCG-AAACCCG-AAACCCGAA-ACCCCGAAAACCCGAAAATC
* * *
1156471 CCGAAAAACCGTCTTAATCCCGAAA-CCCG-AGACCC-AAAA-C
1 CCG--AAACC--C-GAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1156511 CCG-AACCCGAGCAACCCGAAATCCCG-AAACCCG-ATACC
1 CCGAAACCCGA--AACCCGAAACCCCGAAAACCCGAAAATC
** *
1156549 CCGACAATCCTAAAATTAATCCCGAAA-CCCGAAAAACCCGGGAAA-C
1 CCGA-AA-CC--CGA--AA-CCCGAAACCCCG-AAAACCC-GAAAATC
* * *
1156595 CCGAAAACCCGAAACCCGAAATACCCG-AACCCCG-AAACC
1 CCG-AAACCCGAAACCCGAAA-CCCCGAAAACCCGAAAATC
* * *
1156634 CCGAAACGCCGGGAAA-CCGTAAACCTCGGAATGACCCTGAAACCGGACC
1 CCGAAAC-CC--GAAACCCG-AAACC-CCGAA-AACCC-GAAA----ATC
* * * *
1156683 CCGCAACCCGTACCCCGAAAACCCG-AAACTCTCG-AAATC
1 CCGAAACCCGAAACCCGAAACCCCGAAAAC-C-CGAAAATC
* *
1156722 CAGAAACCC-AATACGTCCGAAACTCCG-AAACCCGGATAAA-C
1 CCGAAACCCGAA-AC--CCGAAACCCCGAAAACCC-GA-AAATC
1156763 CCGAAACCCGAAACCCGAAA-CCCGACAAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGA-AAACCCGAAAATC
* * *
1156800 CCGAAAACCTCGAAACTCCGAATCCCCGTAAACCCGGAAAACC
1 CCG-AAACC-CGAAAC-CCGAAACCCCGAAAACCC-GAAAATC
* * * *
1156843 CCGAATA-CCGAAACCTCGAATCTTCCGATAATCCAGAAAAT-
1 CCGAA-ACCCGAAACC-CGAAAC-CCCGA-AAACCCGAAAATC
* *
1156884 ACGAAATCCCG-AACCTCGAAA-CCCG-AAACTCCGTTAAA-C
1 CCGAAA-CCCGAAACC-CGAAACCCCGAAAAC-CCG-AAAATC
*
1156923 CCTGAAACCCGATACACCTCG-AACCGAAAACCGAAAACCCGAAACT-
1 CC-GAAACCCGA-A-ACC-CGAAACC-----CCGAAAACCCGAAAATC
* *
1156969 CCGAAACCCGAAAACCCGAAATCCCGAAAACCCGTAAA--
1 CCGAAACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
* **
1157007 CCGAAACCCGGAAAACCCCGAAAACCTCGAACGCCCGAAATATC
1 CCGAAACCC-G-AAA-CCCG-AAACCCCGAAAACCCGAAA-ATC
* * * * *
1157051 CCGAAAAACCG-CACCCGATA-CCCGGAAACCCGAATTAGAAC
1 CCG-AAACCCGAAACCCGAAACCCCGAAAACCCGAA--A-ATC
* *
1157092 CCGAGACCCGACAAACCCGAAACCCCG-AAACCCGGAAA-C
1 CCGAAACCCG--AAACCCGAAACCCCGAAAACCCGAAAATC
* * * *
1157131 CCGCAA---TAAA-CCGAAACCCGGGAATACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCC-CGAAAACCCGAAAATC
* *
1157165 CCGTAAACCCGAAACCCTGAAA--CCG--AACCGCTAATATAACC
1 CCG-AAACCCGAAACCC-GAAACCCCGAAAACC-C-GA-A-AATC
*
1157206 CGCTGAAACCCGAAACCCGTAAA-CCCGTAAAACCCGAAAGACAAC
1 C-C-GAAACCCGAAACCCG-AAACCCCG-AAAACCCG-AA-A-ATC
* * *
1157251 CGTCGAAACCCGATAACCCGAAACCCGGAATACCCGAAAAAC
1 C--CGAAACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
*
1157293 CTCGAAACCCGAAACCCGAATCCCCG--AACCCG-AAATC
1 C-CGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * * *
1157330 CCGCACCCCG-AACCCGAATACCCTGAATACCCG-AAA-C
1 CCGAAACCCGAAACCCGAA-ACCCCGAAAACCCGAAAATC
* * *
1157367 CCGAAACCCGCAACCCGACAAACCCG-AAACTCCG-AAACC
1 CCGAAACCCGAAACCCGA-AACCCCGAAAAC-CCGAAAATC
* *
1157406 CGCGAAACCCGAATACCCGGGAAAACCCG-AAACCCGGAAA-C
1 C-CGAAACCCGAA-ACCC--GAAACCCCGAAAACCCGAAAATC
* * *
1157447 TCCGCAGCACCCGCTAACCCGAAA-CCCG-AAACCCGGAAA-C
1 -CCG-A-AACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1157487 CCGAACCCCGAAACCCGAAA-CCCGGAAACCCGTAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1157524 CCGAAACCCG-AACCCGAAA-CCCG-AAACCGCG--AATC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACC-CGAAAATC
* *
1157559 CCGAAA-CCGAATACCTGAAACCCTGTAAAAACCTCGAAACA-C
1 CCGAAACCCGAA-ACCCGAAACCCCG--AAAACC-CGAAA-ATC
* * *
1157601 CCGAACCCCGATAACACGAAA-CCCGAAAACCCG-CAA-C
1 CCGAAACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
* * **
1157638 CCGAAACCCGAAACCCCGAAACCCTAGGAAACAGGAAAA-C
1 CCGAAACCCGAAA-CCCGAAACCC-CGAAAACCCGAAAATC
* * *
1157678 CCTGAAACCCGAAAAACGCGAATAAACCCTG-AAACCCGATAA-C
1 CC-GAAACCCG--AAACCCG---AAACCCCGAAAACCCGAAAATC
* * *
1157721 TCTGAAAATCCGAAACCCTGAAA-ACCG-AAACCCG-AAA-C
1 -CCG-AAACCCGAAACCC-GAAACCCCGAAAACCCGAAAATC
* * *
1157759 CCGAAACCCGGAAACCCGTAAACCTCGGGAAACCCG-AAACC
1 CCGAAACCC-GAAACCCG-AAACC-CCGAAAACCCGAAAATC
*
1157800 CGACGAAATCCCGAAATTCCCGAAACTCCG-AAACTCCTGAAAA-C
1 C--CGAAA-CCCGAAA--CCCGAAACCCCGAAAAC-CC-GAAAATC
* *
1157844 CCGATATAATCCTCGAAACCCGGAAAACCCG-AAACCCGTGAAA-C
1 CCG--A-AA-CC-CGAAACCC-GAAACCCCGAAAACCCG-AAAATC
*
1157888 CTCGAAACCCGCAACCGAACCCG-AA-CCCGAAAACCCG-CAA-C
1 C-CGAAACCCG--A---AACCCGAAACCCCGAAAACCCGAAAATC
* **
1157929 CCGAAACCCGAAACCCGGGAAACCGCGATTACCCGGAAATACTC
1 CCGAAACCCGAAACCC--GAAACCCCGAAAACCC-GAAA-A-TC
* *
1157973 CAGAAACCCCG-AACCCGAAA-CCCGAAAACCTCG-GAA-C
1 CCGAAA-CCCGAAACCCGAAACCCCGAAAACC-CGAAAATC
* * * * *
1158010 CCGAAACACGGAACCCCGAAAACCCG-AAACCGGAAAAAC
1 CCGAAAC-CCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1158049 CCGAAACCCGAAAACCCCGAAA-CCCG-AAA-CCG-AAACC
1 CCGAAACCCG-AAA-CCCGAAACCCCGAAAACCCGAAAATC
* *
1158086 CCGCATATAACCCG-AACCTGCGAAACCCGGAAAACCCGTAATAT-
1 CCG---A-AACCCGAAACC--CGAAACCCCGAAAACCCG-AAAATC
** ** * * *
1158130 -ATATCCCTCGGAAAACTCGAAAACCCGAAAGCCCTGAAAACTC
1 CCGAAACC-C-G-AAACCCGAAACCCCGAAAACCC-GAAAA-TC
1158173 CCTGAAACCCTGAAACCCGAAA--CCGAAAACCCG-AAA-C
1 CC-GAAACCC-GAAACCCGAAACCCCGAAAACCCGAAAATC
* * * *
1158210 CCTGGGAAACCCG-AACCCGAAACCTCGGAAACCCTTAGAA-C
1 CC---GAAACCCGAAACCCGAAACCCCGAAAACCC-GAAAATC
*
1158251 CCTGAAAACCCGAAACCCGGAAACCCGGAAAACCCGATGGAAA-C
1 CC-G-AAACCCGAAACCC-GAAACCCCGAAAACCCGA---AAATC
* *
1158295 CCGAAACTCTCGGACACCCGAAA-CCCG-CAA-CCG--AA-C
1 CCGAAAC-C-C-GAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1158331 CTGAAACCCTAAA-CCGAAA--CCGAAAACCCGGAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1158366 CCGGAA-CC----CCTGAAA-CCCGAATAACTCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAA-AAC-CCGAAAATC
* * * **
1158399 CCGAATACCCGGGTAAACCCGGAACCCCGCATACCCGATTATAC
1 CCGAA-ACCC--G-AAACCCGAAACCCCGAAAACCCGAAAAT-C
* * *
1158443 CCGGAACCC-AAACCCGAAA-CCCG-AAACCCGATAATA
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* ** *
1158479 CC-ATGGA-GGGAAACCCGAAA--CCGAGAAA-CCGTCAAA-C
1 CCGA--AACCCGAAACCCGAAACCCCGA-AAACCCG-AAAATC
** *
1158516 CCGCTACCTCCCGAAACCGCGAAA-CCCGCAAAA----AAAAAC
1 CCG--A-AACCCGAAACC-CGAAACCCCG-AAAACCCGAAAATC
*
1158555 CCGTAAACCCGAAACCCTAAA-CCCGATAAACCCG-AAA-C
1 CCG-AAACCCGAAACCCGAAACCCCGA-AAACCCGAAAATC
*
1158593 CCGAAA-CCGAAACCTCGAAACCCCGGCAAACCC-AAAA--
1 CCGAAACCCGAAACC-CGAAACCCC-GAAAACCCGAAAATC
* * * * *
1158630 CCGAAACCAGAAACCAGAAACTCTCGGAACCCCG-AAA-C
1 CCGAAACCCGAAACCCGAAAC-CCCGAAAACCCGAAAATC
* *
1158668 CCGAATACACGAAACGCCGGAAA-CCCGATAACCCG-AAA-C
1 CCGAA-ACCCGAAAC-CC-GAAACCCCGAAAACCCGAAAATC
1158707 CCGAAACCCTGAAACCCGAAA--CCG-AAACCCG-AAA-C
1 CCGAAACCC-GAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1158742 CGAGAGGAAACCGAAAACCCGAAACCCCG-AAACCCGAAAA--
1 C-CGA--AACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1158782 CCG-AACCCGAAACCCTAAAACCCG-AAACCCGTACAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCG-AAAATC
* *
1158819 CCTAAAACCCGTAAAAACCCGTAAA-CCCG-AAACCCG--CA--
1 CC-GAAACCCG---AAACCCG-AAACCCCGAAAACCCGAAAATC
* * *
1158857 CCGAAACCCGAAA-CCGAAACCCGGATAACCC--TAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1158892 CCGAAA-CCGAAACCCG-AA-CCCG--AACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1158924 ACG-AACCCGGAAACCCCG-AACCCTG-AAACCCG-AAA-C
1 CCGAAACCC-GAAA-CCCGAAACCCCGAAAACCCGAAAATC
* * * *
1158960 CCGAAAACCCGAAACCCGAAACCTCGCAAATCCGGAAA-C
1 CCG-AAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1158999 CCGAAACCCCAGGAAACCCTGATAACTCCG-AAACCCGAAACT-
1 CCGAAA-CCC--GAAACCC-GA-AACCCCGAAAACCCGAAAATC
1159041 CCGAAACCCTGAAAACCCGAAA-CCCG-AAACCCG--AA-C
1 CCGAAACCC-G-AAACCCGAAACCCCGAAAACCCGAAAATC
*
1159077 CCGAATACTCCGAAACCCGAAATCCCGAAAACCTCG-AAA-C
1 CCGAA-AC-CCGAAACCCGAAACCCCGAAAACC-CGAAAATC
* * *
1159117 CCGAAGACCCG-AA-CCGAAA-CCTGAAAGCCCG-CAATC
1 CCGAA-ACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1159153 CCGATAACCCTATAATCCCGAGTAA-CCGGATAAACCCGAGAA-C
1 CCGA-AACCCGA-AA-CCCGA--AACCCCGA-AAACCCGAAAATC
* *
1159196 CCGAAACCCGGAAAATCCCGAAA-CCCG-AAACCCGGAAACTA
1 CCGAAACCC-G-AAA-CCCGAAACCCCGAAAACCC-GAAAATC
* *
1159237 CCGATAAACCCGAAACCCGAAAACCCGAAAATCCCGAAACTC
1 CCG--AAACCCGAAACCCGAAACCCCGAAAA-CCCGAAAATC
*
1159279 TCGGGAAAACCCGCGAAACCCGAATA-CCCGAACCGAACCTCCG-AAATC
1 -C-CG-AAA-CC-CGAAACCCGAA-ACCCCGAA---AA-C-CCGAAAATC
* *
1159327 CCGAAAACCCGAAACCTCGAAA-CCCGAATACTCC--AATTC
1 CCG-AAACCCGAAACC-CGAAACCCCGAAAAC-CCGAAAATC
* *
1159366 TC--AA-CCGAAACCCCGAAA-CCCG-AAACCCGCAAA-C
1 CCGAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
* * * *
1159400 CTGAAACCCGAAACCCCGAATACTCCGTAATACCCGAATA-C
1 CCGAAACCCGAAA-CCCGAA-ACCCCG-AAAACCCGAAAATC
* *
1159441 CCGGATAACCCGAAAACCGGAAACTCCGAAAGA-CCG-AAA-C
1 CC-GA-AACCCG-AAACCCGAAACCCCGAAA-ACCCGAAAATC
* *
1159481 CCGAAACCCCGAAAAACACGCG-AACCCTGGAAACTCCG-AAA-C
1 CCGAAA-CCCG--AAAC-C-CGAAACCCCGAAAAC-CCGAAAATC
*
1159523 CCGAAACTCCGAAA---GAAA--CCGAAATCCCG-AAA-C
1 CCGAAAC-CCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1159556 CCAAGAAATACCCGAAACCCTGGCAAA-CCCG-AAACCCGAACA-C
1 CC--G-AA-ACCCGAAACCC--G-AAACCCCGAAAACCCGAAAATC
*
1159599 CCGAAACCCGATAACCCG-AA-CCCGAATA-CCG-AAATC
1 CCGAAACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
** *
1159635 CCGAAACCCGCAAACTCCGTAAA-CCCGAAATGACTCCG-GGACC
1 CCGAAACCCG-AAAC-CCG-AAACCCCGAAA--AC-CCGAAAATC
*
1159678 CCG-AACCCGTGAACACCC-AAA-CCCG-AAACCCGGAAA-C
1 CCGAAACCC--GAA-ACCCGAAACCCCGAAAACCCGAAAATC
*
1159715 CCGAAACCTCGAAACCCGAAA-CCCG-AAACCCGTAAA-C
1 CCGAAACC-CGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1159752 CCGAATACCCGAAACACGAAA-CCGGAATAACCCG--AA-C
1 CCGAA-ACCCGAAACCCGAAACCCCGAA-AACCCGAAAATC
* * *
1159789 CCGAAACTCCGAAAAACCCG--ACCCGGAAATCCCGAATA-C
1 CCGAAAC-CCG--AAACCCGAAACCCCGAAAACCCGAAAATC
*
1159828 CCG--ACCCGTGGAAAACCCGAAACCCCG-AAACCCGATGTAAACCC
1 CCGAAACCC---G-AAACCCGAAACCCCGAAAACCCGA---AAA-TC
1159872 AAACCGAAAACCCGAAACCCGAAA-CCCG-AAACCCGATAAA-C
1 ---CCG-AAACCCGAAACCCGAAACCCCGAAAACCCGA-AAATC
* * *
1159913 CCGAAAACCGCAACCCGCAA-CCCG-AAACCCGGAAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCC-GAAAATC
* *
1159950 CCGCAA-CCGAAACCCGGAGTAA-CCCG-AAACCAG-AAA-C
1 CCGAAACCCGAAACCC-GA--AACCCCGAAAACCCGAAAATC
*
1159987 CCG-AA-CCGAAACCTGAAA-CCCG-AAACCCG--AATC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1160020 CCGAAACCCGCAACCC-TAACCTCCG-AAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACC-CCGAAAACCCGAAAATC
* *
1160056 CCGAAACCCGATTAAACCCGAAA-CCCGGAAACCCGAAAAAC
1 CCGAAACCCG---AAACCCGAAACCCCGAAAACCCGAAAATC
** * **
1160097 CCGTGA----AAACCCGAAA-CCCGTAAACCCGCGAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
** * * * ***
1160130 CCGAAACCCGTAATACTCCGCCACCCTGGACACCCCTTTGAA-C
1 CCGAAACCCG-AA-AC-CCGAAACCC-CGAAAACCC-GAAAATC
**
1160173 CCGAAACCCGCAAACCCGAAA-CCCTTAAACCCG-AAA-C
1 CCGAAACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
* * * *
1160210 CCGAAACCTCTTAAACCCGAAA-GCCG-ACACCCGATTAATC
1 CCGAAACC-C-GAAACCCGAAACCCCGAAAACCCGA-AAATC
*
1160250 CCGAAA-CCGAAACCCGAAA-CCCGGAAA--CG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1160283 CCGAAACCCG-AA---GAAA-CCGGAAATCCCGGAAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCC-GAAAATC
* * *
1160317 CAGAACCCCGAAACCCGGAATACCTCGAAAAGCCTCG-AAA-C
1 CCGAAACCCGAAACCC-GAA-ACCCCGAAAA-CC-CGAAAATC
*
1160358 CCGGAAACCCG-AACCCGAAAACTCCG-AAA-CCG-AAA--
1 CC-GAAACCCGAAACCCG-AAACCCCGAAAACCCGAAAATC
* *
1160393 CCGAAACCCGAAACCCCTAAAACCCG-AAACCCG-AAA-C
1 CCGAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
** * * *
1160430 CCGAAACCCTGTAAATACGAAA-CCGGATGAACCCGAGAA-C
1 CCGAAACCC-G-AAACCCGAAACCCCGA-AAACCCGAAAATC
*
1160470 CCGAAACCTGGGGAAACCCGATAA--CCG-AAACCCG-AAA-C
1 CCGAAACC---CGAAACCCGA-AACCCCGAAAACCCGAAAATC
*
1160508 CCG-AACCCGAAACCCG-AATCCCG-AAA-CCG-AAA--
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1160540 CCGAAA-CCGAAACCCGAAACCCCGATAACCCG-GAATC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1160577 CAGTAAATTCCCCGGAAAACCCGGAAAACCCG-AAACCTCG-AAA-C
1 CCG-AAA---CCC-G-AAACCC-GAAACCCCGAAAACC-CGAAAATC
* *
1160621 CC-AAACCCTCAAACCCGAGAAACCCG-AAA-CCG-AAA-C
1 CCGAAACCC-GAAACCCGA-AACCCCGAAAACCCGAAAATC
* *
1160657 CCGAAACCCGATAACCCGGAAACCCCG-AAACCGGACAA-C
1 CCGAAACCCGA-AACCC-GAAACCCCGAAAACCCGAAAATC
1160696 CCGAGAACCCGATCAACCCGAAA-CCCGAAAA-CC--AAA-C
1 CCGA-AACCCGA--AACCCGAAACCCCGAAAACCCGAAAATC
1160733 CCGATAACTCCGAAACCCGATAA-CCCG-AAACCCGAAAA-C
1 CCGA-AAC-CCGAAACCCGA-AACCCCGAAAACCCGAAAATC
*
1160772 CCGAATACCCGGGGAAACCCCGAAACCTCG-AAACCCG-AAA-C
1 CCGAA-ACCC---GAAA-CCCGAAACCCCGAAAACCCGAAAATC
* * *
1160813 TCGAATACCGTCGAAACCCGTAAA-CCAGATAACCCG-AAA-C
1 CCGAA-ACC--CGAAACCCG-AAACCCCGAAAACCCGAAAATC
* * *
1160853 CCGAACAAACCCGTACCCCGGGAAACCCTG-AAACCTTCGAAAACTC
1 CCG---AAACCCGAAACCC--GAAACCCCGAAAACC--CGAAAA-TC
* * *
1160899 CGGATAAACCCGTAAAAACCCGGGATAAACCCG-ATA-CCGATTTAAA-C
1 CCG--AAACCCG---AAACCC--GA-AACCCCGAAAACCCGA---AAATC
**
1160946 CCG-AACCCGAAAACCCTG-AA----GAGAAACCTCGAACCT-
1 CCGAAACCCG-AAACCC-GAAACCCCGA-AAACC-CGAAAATC
*
1160982 CAGAAACTCCGAAACCCGAAA-CCCGAAAACCCG--AA-C
1 CCGAAAC-CCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1161018 CCTAAACCTC-AAACCCGAAA-CCCG-AAACCCGGAAA--
1 CCGAAACC-CGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1161053 CCGACAATCCCGAAACCCGAAAAACCCGAAATAAACTCGAAAA-C
1 CCGA-AA-CCCGAAACCCG-AAACCCCG--A-AAACCCGAAAATC
*
1161097 CCG-AACCCGATAACCCGAAA-CCCG-AAACCCGAAAACC
1 CCGAAACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
*
1161134 CGACTGAAACACCGACACTCCGAAA-CCCG-AAACCCGAAAA-C
1 C--C-GAAAC-CCGAAAC-CCGAAACCCCGAAAACCCGAAAATC
*
1161175 CCGAATACCCGACAACCTGAAA-CCCGAAAACCCG--AA-C
1 CCGAA-ACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
1161212 CCGAAACCCGAAACCCGAAA-CCCGAAAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1161248 CCGAAACCCG-AA--CGAAA-CCCGAAACCCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1161281 CCGAAACCCGAACACCCGAAA-TCCGATAACCCG-AAATC
1 CCGAAACCCGAA-ACCCGAAACCCCGAAAACCCGAAAATC
* *
1161319 CTGAGAAACCCGCGGAAATACCCTAGAAAACCCG-AAACCCG-AAA-C
1 C--CGAAA-CC-C-G-AA-ACCC--GAAACCCCGAAAACCCGAAAATC
* * *
1161364 GCTGAAACCCGACACCCG-AA--CCGATAACCCGAAAA-C
1 -CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1161400 CCGAAACCCGAGAAACCCGATAA-CCCGAAAACCCG-AAA-C
1 CCGAAACCC--GAAACCCGA-AACCCCGAAAACCCGAAAATC
* *
1161439 CCGAAACCCGAAACCCGATAA-ACCG-AACCCCG-AAA-C
1 CCGAAACCCGAAACCCGA-AACCCCGAAAACCCGAAAATC
* * *
1161475 CCGAAACCCGAAACCAG-AACACTCG-AAACCCGGAAA-C
1 CCGAAACCCGAAACCCGAAAC-CCCGAAAACCCGAAAATC
1161512 CCGAAA-CCGAAACCCGAATA-CCCGTAAAACCCGAAAAATGC
1 CCGAAACCCGAAACCCGAA-ACCCCG-AAAACCCG-AAAAT-C
1161553 CCGAAACCCGAAA-CCGAAA--CCG-AAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1161586 CCGAAACCCGAAACCCCGAGA-CCCTAAACCCCGAAAA-C
1 CCGAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
*
1161624 CTCGGAGAAACCCGAAACCGGAAA-CCCG-AAACCCG-AAA-C
1 C-C---GAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1161663 CCGAAACCC-AAA-CCGAGAATGCACCCG-AAACCCG-AAA-C
1 CCGAAACCCGAAACCCGA-AA--C-CCCGAAAACCCGAAAATC
*
1161701 CCGAGAACCCGAAACCCGAAAACCCGGGAAAACCCG-AAA-C
1 CCGA-AACCCGAAACCCG-AAACCC-CGAAAACCCGAAAATC
*
1161741 CCGAAACCCGAGAA-CCGAAATCCTCG-AAACCCG-AAATC
1 CCGAAACCCGA-AACCCGAAA-CCCCGAAAACCCGAAAATC
*
1161779 CTCGACAACCCGAAA-CCG-AA-CCCG-AAACCCGGAAA-C
1 C-CGA-AACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1161815 CCGGAAACCCGAAATCCCGAAAACCCG--AA--CG-AAA-C
1 CC-GAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
* *
1161850 CGCGAAACCCGACAACCCCGGAAAACCCG-AAACCCGAACA--
1 C-CGAAACCCGA-AA-CCC-GAAACCCCGAAAACCCGAAAATC
* *
1161890 CC-AAACCCGTGAACCCGAAA-ACCG-AAACCCG-AAA--
1 CCGAAACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
* *
1161924 CCGAAATCCGAAACCCCCGCATACCCCG-AAACCCG-AAA-C
1 CCGAAACCCGAAA--CCCG-AAACCCCGAAAACCCGAAAATC
* * *
1161963 CCGAAACCCGAAACCCGAAAACCCGAAACCCCG--AACC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
** * **
1162000 CCGAAACTCCGATAACCCGGAAAACCTATGGTCACCCCCTGAAAA-C
1 CCGAAAC-CCGA-AACCC-G-AAACC--CCG-AAAACCC-GAAAATC
*
1162046 CCGTAAACTCGTAAACCCG-AA--CCGAAAACCCGAAAA-C
1 CCG-AAACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
*
1162083 CCGAAACCCGAAACCCGAAACCCTG-AAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1162119 CCGAAACCCGATAACCC-TAA-CCCGTAAACCCGAAAA-C
1 CCGAAACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
* *
1162156 CCGACACCCGAAACCCG-AA-CCCG-AAACCCG--AACC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1162190 CCGAAACCCGAGAA-CCGAAAACCCCGAATACCC---AA-C
1 CCGAAACCCGA-AACCCG-AAACCCCGAAAACCCGAAAATC
1162226 CCTGATCAAACCCGAAACCCGAAA-CCCG-AAACCTCG-AAA-C
1 CC-G---AAACCCGAAACCCGAAACCCCGAAAACC-CGAAAATC
* * *
1162266 CCGGAAACCCGAAACCCG-AACTCCG-ATACCCGAACA-C
1 CC-GAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1162303 CCGAAA-CCGAAACCCAAAACCCGCG-AAACCCGAAAA-C
1 CCGAAACCCGAAACCCGAAACCC-CGAAAACCCGAAAATC
1162340 CCGTAAACCCG-AACTCCTGAAA-CCCGAAAACCTCG-AAA-C
1 CCG-AAACCCGAAAC-CC-GAAACCCCGAAAACC-CGAAAATC
* * * *
1162379 CCGAAACCCGAAAACCCGTAAAACCCGAGAACCAGGGAAA-C
1 CCGAAACCCG-AAACCCG-AAACCCCGAAAACC-CGAAAATC
1162420 CCGAAACCCGAAACCCGAAA--CCG-AAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1162454 CCGAAACCCGAAACCCGAAA-CCCG-AAACCCGAGTAACC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGA-AAATC
* *
1162492 CCTGAAACCTCGAAATCCCGAAACCCCGTGAATACTCCGGAAA-C
1 CC-GAAACC-CGAAA-CCCGAAACCCC--GAAAAC-CCGAAAATC
*
1162536 CCGAACACCCGAAACCCGAAA-CCCG-AAACCCGAATA-C
1 CCGAA-ACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1162573 CGGAAAACCCGAAAACCCGAAACCCCG-AAACCCG-GAA-C
1 CCG-AAACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
* *
1162611 CCGAAACCCGAAACCCGAAA-ACCG-AAACCCGAATA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * * * *
1162647 CCTGCAACCCGCTAACCCGAATCCCTGAGAAA-CCTAGAAA-C
1 CC-GAAACCCG-AAACCCGAAACCCCGA-AAACCCGA-AAATC
* * *
1162688 CCGAAAACCG-CACCTC-AAA-CCCG-AAA-CCGGAAA--
1 CCGAAACCCGAAACC-CGAAACCCCGAAAACCCGAAAATC
* *
1162721 CCGAAACTCTCGTAAAAACCGAAAAAAACCCG-AAACCCGAAAA-C
1 CCGAAAC-C-CG--AAACCCG---AAACCCCGAAAACCCGAAAATC
* *
1162765 CCGAAACCCGAAAACCCGAAA-CACGAAATACCCGGAAA-C
1 CCGAAACCCG-AAACCCGAAACCCCGAAA-ACCCGAAAATC
* * *
1162804 CCTAAACCCGAAA-CCG-ACCCCCGTAAA-CCG----T-
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1162835 TCGAAACCCTAAACCCG-AACCCCG-AAACCCGGAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* *
1162871 CTGAAATACTCCGAAACCCGAAAACCCG-AAACCCGGTAAAA-C
1 CCG-AA-AC-CCGAAACCCGAAACCCCGAAAACCC-G-AAAATC
* *
1162913 CCGAGATACCCGGAACCCGGAAACTCCCTGGAAAACCCGAAAACC
1 CCGA-A-ACCCGAAACCC-GAAAC-CCC--GAAAACCCGAAAATC
*
1162958 CCGAAA-CCGAAACCCG-AA-CCCGCAAACCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1162992 CCGAAACCCGAAACCCGAAA--CCGCAAACCCGAGAAATCC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGA-AAAT-C
*
1163031 CCGGAAACCCGGAAA--CGACTACCGCGCGGAAAACCCG-AAA-C
1 CC-GAAACCC-GAAACCCGA-AACC-C-C-GAAAACCCGAAAATC
* *
1163072 CCGAAAACCCGAAACCCGGAAA--CCGGAACCCCG-AAA-C
1 CCG-AAACCCGAAACCC-GAAACCCCGAAAACCCGAAAATC
* * *
1163109 CCGATAACCCGGACCCCGAAA-CCCGAAACCCCGAAAATC
1 CCGA-AACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * * *
1163148 CCGAAATCTGAAACCCGAAATCCC--AAACCCGAATA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1163184 CCGTAAACTCCGAAACCCGAAA-CCCG-AAACCCGAAATCATC
1 CCG-AAAC-CCGAAACCCGAAACCCCGAAAACCCGAAA--ATC
* * * *
1163225 CCGAAATCCCCGTACCACCCGAAACCCGGATACCCCG-AAA-C
1 CCGAAA--CCCG-A-AACCCGAAACCCCGAAAACCCGAAAATC
*
1163266 CCGAAACCCGAAACCCGAAA-CCCG-AAA-CCG-AAAGC
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1163301 CCG-AA-CCGTAAACCCGAAA-CCCGACATACCCGAGGAAA--
1 CCGAAACCCG-AAACCCGAAACCCCGA-AAACCCGA--AAATC
* * *
1163339 CCGAAAACCCCGAAACCTCCCGAAA-CCCGATAA-TCGAAAAAC
1 CCG-AAA-CCCGAAA---CCCGAAACCCCGAAAACCCGAAAATC
*
1163381 CCGAAACCCGAAAACCCGAAA-CCCG-AAACCCG--AACC
1 CCGAAACCCG-AAACCCGAAACCCCGAAAACCCGAAAATC
*
1163417 CCGAAACCCAAAACCCG--A----GAAAACCCG--AA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1163447 CCGGAAACCCTAAACCCG-CA-CCCG-AAACCCGGAAA-C
1 CC-GAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1163483 CCGAAACCCGAAACCCGAAA--CCGAAAACTCCG-AAA--
1 CCGAAACCCGAAACCCGAAACCCCGAAAAC-CCGAAAATC
1163518 CCGAAACCCGAAACCCGAAA-CCCG-AAACCCGAAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
* * *
1163554 CCGTAAGAGCCCTAAA-CCGACAAACCCG-AAACCCGATAA-C
1 CCG-AA-A-CCCGAAACCCGA-AACCCCGAAAACCCGAAAATC
* **
1163594 CCGAAACCCGATAACCCGAAAACCCG-AAACCCGATCA-C
1 CCGAAACCCGA-AACCCGAAACCCCGAAAACCCGAAAATC
* *
1163632 CCGAAACCCGAAACCCCG-AA-CCCGGAAACCCGAAACT-
1 CCGAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
* * *
1163669 CCGAAATCCCCAAACCCGAAA-CCCGAAAACCGTGAAGAAAC
1 CCGAAA-CCCGAAACCCGAAACCCCGAAAACC-CGAA-AATC
*
1163710 CCGAAACCCGAAATCCCGAAA-CCCGGAAACCCG-AAA-C
1 CCGAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
* ** *
1163747 CCGAAACCCGAAATCCCGAAA-ACCTTAAACCCG-AACT-
1 CCGAAACCCGAAA-CCCGAAACCCCGAAAACCCGAAAATC
* *
1163784 CCG-AACCCGAAACCCGAAA-CCCGCAACCCCG-AAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
*
1163819 CCGAAACCCGAAACCCGCAAAACCCG-AAACCCG--AA-C
1 CCGAAACCCGAAACCCG-AAACCCCGAAAACCCGAAAATC
* * *
1163855 CCGACAAACCCGAAACCCCGGAAACCCC-TAACCCCG--AACC
1 CCG--AAACCCGAAA-CCC-GAAACCCCGAAAACCCGAAAATC
* * *
1163895 CTCGAACCCCGAACCCCGAACCCCCG-AAACCCG-AAA-C
1 C-CGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
**
1163932 CCGAAACCCGAAA-CCG-AACCCCG--AACCCCTAAA-C
1 CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
1163966 CCGAAACCCGAAACCCGAAACCC
1 CCGAAACCCGAAACCCGAAACCC
1163989 TTAAACGGAA
Statistics
Matches: 7401, Mismatches: 825, Indels: 2225
0.71 0.08 0.21
Matches are distributed among these distances:
30 14 0.00
31 59 0.01
32 71 0.01
33 176 0.02
34 313 0.04
35 521 0.07
36 754 0.10
37 1036 0.14
38 799 0.11
39 864 0.12
40 655 0.09
41 627 0.08
42 499 0.07
43 337 0.05
44 265 0.04
45 193 0.03
46 105 0.01
47 43 0.01
48 24 0.00
49 28 0.00
50 10 0.00
51 6 0.00
52 2 0.00
ACGTcount: A:0.40, C:0.39, G:0.15, T:0.06
Consensus pattern (39 bp):
CCGAAACCCGAAACCCGAAACCCCGAAAACCCGAAAATC
Found at i:1158355 original size:19 final size:18
Alignment explanation
Indices: 1158312--1158366 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 18
1158302 TCTCGGACAC
*
1158312 CCGAAACCCGCAACCGAA
1 CCGAAACCCGAAACCGAA
*
1158330 CCTGAAACCCTAAACCGAAA
1 CC-GAAACCCGAAACCG-AA
1158350 CCGAAAACCCGGAAACC
1 CCG-AAACCC-GAAACC
1158367 CGGAACCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 2 0.07
19 13 0.43
20 10 0.33
21 5 0.17
ACGTcount: A:0.42, C:0.40, G:0.15, T:0.04
Consensus pattern (18 bp):
CCGAAACCCGAAACCGAA
Found at i:1158434 original size:26 final size:26
Alignment explanation
Indices: 1158350--1158451 Score: 88
Period size: 26 Copynumber: 4.0 Consensus size: 26
1158340 TAAACCGAAA
*
1158350 CCGAAAACCCG-G-AAACCCGGAACC
1 CCGAATACCCGAGTAAACCCGGAACC
* *
1158374 CCTGAA-ACCCGAAT-AACTCC-GAAAC
1 CC-GAATACCCGAGTAAAC-CCGGAACC
*
1158399 CCGAATACCCGGGTAAACCCGGAACC
1 CCGAATACCCGAGTAAACCCGGAACC
* * *
1158425 CCGCATACCCGATTATACCCGGAACC
1 CCGAATACCCGAGTAAACCCGGAACC
1158451 C
1 C
1158452 AAACCCGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
24 10 0.16
25 20 0.32
26 32 0.52
ACGTcount: A:0.33, C:0.40, G:0.18, T:0.09
Consensus pattern (26 bp):
CCGAATACCCGAGTAAACCCGGAACC
Found at i:1158837 original size:10 final size:9
Alignment explanation
Indices: 1158791--1158847 Score: 61
Period size: 8 Copynumber: 6.8 Consensus size: 9
1158781 ACCGAACCCG
1158791 AAACCC-TA
1 AAACCCGTA
1158799 AAACCCG--
1 AAACCCGTA
1158806 AAACCCGTA
1 AAACCCGTA
*
1158815 CAACCC-TA
1 AAACCCGTA
1158823 AAACCCGTAA
1 AAACCCGT-A
1158833 AAACCCGT-
1 AAACCCGTA
1158841 AAACCCG
1 AAACCCG
1158848 AAACCCGCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
7 7 0.17
8 20 0.48
9 6 0.14
10 9 0.21
ACGTcount: A:0.44, C:0.39, G:0.09, T:0.09
Consensus pattern (9 bp):
AAACCCGTA
Found at i:1159936 original size:123 final size:115
Alignment explanation
Indices: 1159866--1163838 Score: 479
Period size: 123 Copynumber: 32.8 Consensus size: 115
1159856 AACCCGATGT
1159866 AAACCCAAACCGAAAACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAACCGCAACCCGC
1 AAACCCAAACCG-AAACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAACCGCAACCCGC
1159931 AACCCGAAACCCGGAAAACCCGCAACCGAAACCCGGAGTAACCCGAAACCAG
65 AACCCGAAACCCGGAAAACCCGCAACCGAAACCCGGAG-AACCCGAAACCAG
* * * *
1159983 AAACCCGAACCGAAACCTGAAACCCGAAACCCGAATCCCG--AAACCCG-CAACC-CTAACCTCC
1 AAACCCAAACCGAAACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAACCGC-AA-C-CC
* * *
1160044 GAAACCCGAAACCC-G-AAACCCGATTAAACCCGAAACCCGGA-AACCCGAAAAACCCG
63 GCAACCCGAAACCCGGAAAACCCG---CAA-CCGAAACCCGGAGAACCCG--AAACCAG
* * * ** * *
1160100 TGAA---AACCCGAAACCCGTAAACCCGCGAACCCGAAACCCG-TAATACTCCGCCACCCTGGAC
1 -AAACCCAAACCGAAACCCG-AAACCCG-AAACCCGAAACCCGATAA-AC-CCGAAAACC-GCA-
* * * **
1160161 ACCC-CTTTGAACCCGAAACCC-GCAAACCCGAAACCCTTAAACCC-GA-AACCCGAAACCTCTT
59 ACCCGC----AACCCGAAACCCGGAAAACCCGCAA-CC-GAAACCCGGAGAACCCGAAA-C-CAG
* * *
1160222 AAACCCGAAAGCCGACACCCGATTAATCCCGAAA-CCGAAACCCG--AAACCCGGAAA-CGAAAC
1 AAACCC-AAA-CCGAAACCCGA--AA-CCCGAAACCCGAAACCCGATAAACCCGAAAACCGCAAC
* * * * * *
1160283 CCGAAACCCGAAGAAACCGGAAATCCCGGAAAACC-AGAACCCCGA-AACCCGGAATACCTCG
61 CCGCAACCCG-A-AACCCGGAAAACCC-G-CAACCGA-AACCCGGAGAACCC-GAA-ACC-AG
* *
1160344 AAAAGCCTCGAAACCCGGAAACCCG-AACCCGAAAACTCCGAAA-CCG--AAA-CCGAAACCCGA
1 -AAA-CC-C-AAA-CC-GAAACCCGAAACCCG-AAAC-CCGAAACCCGATAAACCCGAAAACCGC
* ** * *
1160404 AACCC-CTAAAACCCGAAACCC-G-AAACCCGAAACCCTGTAAATAC-GA-AACCGGATGAACCC
58 AACCCGC---AACCCGAAACCCGGAAAACCCGCAA-CC-G-AAACCCGGAGAACCCGA--AACCA
1160464 G
115 G
*
1160465 AGAACCCGAAACCTGGGGAAACCCGATAA-CCGAAACCCGAAACCCG---AACCCGAAACCCG-A
1 A-AACCC-AAACC----GAAACCCGA-AACCCGAAACCCGAAACCCGATAAACCCGAAAACCGCA
* * * * *
1160525 ATCCCG-AAACCGAAA-CC-G-AAA-CCGAAACCCGAAACCCCGATAACCCGGAATCCAG
59 A-CCCGCAACCCGAAACCCGGAAAACCCGCAA-CCGAAACCCGGAGAACCC-GAAACCAG
* *
1160580 TAAATTCCC---CGGAAAACCCGGAAAACCCGAAACCTCGAAACCCAAACCCTCAAACCCGAGAA
1 -AAA--CCCAAACCG-AAACCC-G-AAACCCGAAACC-CGAAACCC-GA---T-AAACCCGA-AA
* * * * *
1160642 ACC-CGAAACCGAAACCCGAAACCC-GATAACCCGGAAACCCCGAAA-CCGGACAACCCGAGAAC
53 ACCGC-AACCCGCAACCCGAAACCCGGAAAACCC-GCAA--CCGAAACCCGGAGAACCCGA-AAC
*
1160704 CCG
113 CAG
* *
1160707 ATCAACCCGAAACCCGAAAACC-AAACCCGATAACTCCGAAACCCGAT-AACCCGAAACCCG-AA
1 A--AACCC-AAA-CCGAAACCCGAAACCCGA-AAC-CCGAAACCCGATAAACCCGAAAACCGCAA
* * * *
1160769 -----AACCCGAATACCCGGGGAAACCCCGAAACCTCGAAACCC-GA-AACTCGAATACCGTCG
60 CCCGCAACCCGAA-ACCC--GGAAAACCCGCAA-C-CGAAACCCGGAGAACCCGAA-ACC--AG
* * ** *
1160826 AAACCCGTAAACCAGATAACCCGAAACCCGAACAAACCCGTACCCCGGGAAACCCTGAAACCTTC
1 AAACCC--AAACC-GA-AACCCGAAACCCG---AAACCCGAAACCCGATAAACCC-GAAAAC--C
* *
1160891 GAAAACTCCGGATAAACCCGTAAAAACCCGGGATAAACCCG-ATACCGATTTAAACCC---GAAC
56 G-CAAC-CC-G--CAACCCG---AAACCC-GGA-AAACCCGCA-ACCG----AAACCCGGAGAAC
*
1160952 CCGAAAACCCTG
106 CCG-AAA-CCAG
*
1160964 AAGA--GAAACCTCG-AACCTCAGAAACTCCGAAACCCGAAACCCGA-AAACCCGAACCCTAAAC
1 AA-ACCCAAA-C-CGAAACC-C-GAAAC-CCGAAACCCGAAACCCGATAAACCCG-A----AAAC
* * * * *
1161025 CTCAAACCCGAAACCCGAAACCCGG-AAA-CCGACAATCCCGAAACCCGAAAAACCCG-AA--AT
55 CGC-AACCCGCAACCCGAAACCCGGAAAACCCG-CAA--CCGAAACCCGGAGAACCCGAAACCAG
*
1161085 AAACTCGAAAACCCG-AACCCGATAACCCGAAACCCGAAACCCGA-AAACCCGACTGAAACAC-C
1 AAAC-C-CAAA-CCGAAACCCGA-AACCCGAAACCCGAAACCCGATAAACCCGA---AAAC-CGC
* * * *
1161147 GACACTCCGAAACCCGAAACCC-GAAAACCCGAATACCCGACAA-CCTGA-AACCCGAAAACCCG
58 -A-AC-CCGCAACCCGAAACCCGGAAAACCCGCA-A-CCGA-AACCCGGAGAACCCG-AAACCAG
*
1161209 -AACCCGAAACCCGAAACCCGAAACCCGAAAACCCGAAACCCG--AAACCCG--AA-CGAAACCC
1 AAACCC-AAA-CCGAAACCCGAAACCCG-AAACCCGAAACCCGATAAACCCGAAAACCGCAACCC
* * * *
1161268 GAAACCCCGAAACCC-G-AAACCCGAACACCCGAAATCC-GATAACCCGAAATCCTGAG
63 GCAA-CCCGAAACCCGGAAAACCCG--CAACCGAAACCCGGAGAACCCGAAA-CC--AG
* *
1161324 AAACCCGCGGAAATACCCTAGAAAACCCGAAACCCGAAACGCTGAAACCCG--ACACCCG--AAC
1 AAA-CC-C---AA-A-CC--G-AAACCCGAAACCCGAAAC-CCGAAACCCGATAAACCCGAAAAC
* * *
1161385 CGATAACCCGAAAACCCGAAACCC-GAGAAACCCGATAACCCGAAAACCC-GA-AACCCGAAACC
55 CG-CAACCCG-CAACCCGAAACCCGGA-AAACCCG-CAA-CCG-AAACCCGGAGAACCCGAAACC
*
1161447 CG
114 AG
* * * * * *
1161449 AAACCCGATAAACCGAACCCCGAAACCCGAAACCCGAAACCAGA-ACACTCGAAACCCGGAAACC
1 AAACCC---AAACCGAAACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAACC-GCAACC
* * *
1161513 CG-AAACCGAAACCC-GAATACCCGTAAAACCCGAAAAATGCCC-GA-AACCCGAAACC-G
62 CGCAACCCGAAACCCGGAAAACCCG--CAA-CCG--AAA--CCCGGAGAACCCGAAACCAG
* * * *
1161569 AAACCGAAACCCGAAACCCGAAACCCGAAACCCCGAGACCC--TAAACCCCGAAAACCTCGGA--
1 AAACCCAAA-CCGAAACCCGAAACCCGAAA-CCCGAAACCCGATAAA-CCCGAAAACCGC-AACC
* *
1161630 -GAAACCCGAAA-CCGG-AAACCCGAAACCCGAAACCC-GA-AACCC-AAACC-G
62 CGCAACCCGAAACCCGGAAAACCCGCAA-CCGAAACCCGGAGAACCCGAAACCAG
** * **
1161678 AGAATGC-ACCCGAAACCCGAAACCCGAGAACCCGAAACCCGA-AAACCCGGGAA----AACCCG
1 A-AACCCAAACCGAAACCCGAAACCCGA-AACCCGAAACCCGATAAACCCGAAAACCGCAACCCG
* * * *
1161737 AAACCCGAAACCC-GAGAA-CCGAAATCCTCGAAACCC-GA-AATCCTCGACAACCCG
64 CAACCCGAAACCCGGAAAACCCGCAA--C-CGAAACCCGGAGAA-CC-CGA-AACCAG
* *
1161791 AAACCGAACCCGAAACCCGGAAACCCGGAAACCCGAAATCCCGA-AAACCCGAACGAAACCGCGA
1 AAACCCAAACCGAAACCC-GAAACCC-GAAACCCGAAA-CCCGATAAACCCG-A--AAACCGC--
* *
1161855 AACCCGACAACCCCGGAAAACCC-G-AAACCCG-AACACCAAACCC-GTGAACCCGAAAACC-G
58 AACCCG-CAA-CCC-G-AAACCCGGAAAACCCGCAAC-CGAAACCCGGAGAACCCG-AAACCAG
* * * *
1161914 AAACCCGAAACCGAAATCCGAAACCCCCGCATACCCCGAAACCCG--AAACCCGAAACCCGAAAC
1 AAACCC-AAACCGAAACCCGAAA--CCCG-A-AACCCGAAACCCGATAAACCCGAAAACCGCAAC
* * * * * * ** *
1161977 CCGAAAACCCGAAACCCCG-AACCCCGAAACTCCGATAACCCGGAAAACCTATGGTCACCCCCTG
61 CCG-CAACCCGAAACCCGGAAAACCCGCAA--CCGA-AACCCGGAGAACC---CG--A-AACCAG
*
1162041 AAAACCCGTAAACTCGTAAACCCGAACCGAAAACCCGAAAACCCGAAACCCG--AAACCCGAAAC
1 -AAACCC--AAAC-CG-AAA--C---CCG-AAACCCG-AAACCCGAAACCCGATAAACCCGAAAA
* * * * * * *
1162104 CCTGAAACCCGAAACCCGAAACCC-GATAACCC-TAACCCGTAAACCC-GAAAACCCGACACCCG
54 CC-GCAACCCGCAACCCGAAACCCGGAAAACCCGCAA-CCG-AAACCCGGAGAACCCGAAACCAG
* * *
1162166 AAACCCGAACCCGAAACCCGAACCCCGAAACCCGAGAA-CCGA-AAACCCCGAATACC-CAACCC
1 AAACCC-AAACCGAAACCCGAAACCCGAAACCCGA-AACCCGATAAA-CCCGAAAACCGCAACCC
* *
1162228 TGATCAAACCCGAAACCC-G-AAACCCGAAACCTCGAAACCCGGA-AACCCGAAACCCG
63 -G--C-AACCCGAAACCCGGAAAACCCGCAA-C-CGAAACCCGGAGAACCCGAAACCAG
* * ** *
1162284 -AACTCCGATACCCGAACACCCGAAA-CCGAAACCCAAAACCCGCGAAACCCGAAAACCCGTAAA
1 AAAC-CC-A-AACCGAA-ACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAA-CCG-CAA
* * *
1162347 CCCG-AACTCCTGAAACCC-GAAAACCTCGAAACCCGAAACCC-GAAAACCCGTAAAACCCG
60 CCCGCAAC-CC-GAAACCCGGAAAACC-CGCAA-CCGAAACCCGGAGAACCCG--AAACCAG
* * *
1162406 AGAACCAGGGAAACCCGAAACCCGAAACCCGAAA-CCGAAACCCG--AAACCCGAAACCCGAAAC
1 A-AACC---CAAA-CCGAAACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAACCGCAAC
* * * * *
1162468 CCGAAACCCGAAACCCGAGTAACCCCTGAAACCTCGAAATCCC-GA-AACCCCGTGAATACTCCG
61 CCGCAACCCGAAACCCG-GAAAACCC-GCAA-C-CGAAA-CCCGGAGAA-CCC--GAA-A--CCA
1162531 G
115 G
* *
1162532 AAACCCGAACACCCGAAACCCGAAACCCGAAACCCGAATACCGGA-AAACCCGAAAACCCGAAAC
1 AAACCC-AA-A-CCGAAACCCGAAACCCGAAACCCGAA-ACCCGATAAACCCGAAAA-CCGCAA-
* * * * *
1162596 CCCGAAACCCGGAACCC-G-AAACCCGAAACCCGAAAACC-GA-AACCCGAATACCCTG
60 CCCGCAACCCGAAACCCGGAAAACCCGCAA-CCGAAACCCGGAGAACCCGAA-A-CCAG
* * * * *
1162651 CAACCCGCTAACCCGAATCCCTGAGAAACCTAGAAACCCGAAAACCGCACCTCAAACCCG-AAAC
1 -AAACC-C-AAACCGAAACCC---GAAACC-CGAAACCCGAAACCCG-A--T-AAACCCGAAAAC
* * * * * *
1162715 CGGAAACCGAAACTCTCGTAAAAACCGAAAAAAACCCGAAACCCGAAAACCC-GA-AACCCGAAA
55 CGCAACCCGCAAC-C-CG--AAACCCG--GAAAACCCGCAA-CCG-AAACCCGGAGAACCCG-AA
*
1162778 ACCCG
111 ACCAG
* * ** * **
1162783 AAACACGAAATACCCGGAAACCCTAAACCCGAAA-CCGACCCCCG-TAAACCGTTCGAAACCCTA
1 AAAC-C-CAA-A-CC-GAAACCCGAAACCCGAAACCCGAAACCCGATAAACC---CGAAAACCGC
* * * *
1162846 AACCCG-AACCCCGAAACCCGG-AAACCTGAAATACTCCGAAACCC-GAAAACCCGAAACCCGG
58 AACCCGCAA-CCCGAAACCCGGAAAACCCG-CA-A--CCGAAACCCGGAGAACCCGAAA-CCAG
* * *
1162907 TAAAACCC-GA--GATACCCGGAACCCGGAAACTCCCTGGAAAACCCGA-AAACCCCG-AAACCG
1 --AAACCCAAACCGAAACCCGAAACCC-GAAA--CCC--G-AAACCCGATAAA-CCCGAAAACCG
* *
1162967 AAACCCG-AACCCGCAAACCC-G-AAACCCGAAACCCGAAACCC-GA-AA-CCGCAAACCCGAG
57 CAACCCGCAACCCG-AAACCCGGAAAACCCGCAA-CCGAAACCCGGAGAACCCG-AAA-CC-AG
* *
1163025 AAATCCCCGGAAACCCGGAAA--CGACTACCGCGCGGAAAACCCGAAACCCGA-AAACCCGAAAC
1 AAA--CCC--AAA-CC-GAAACCCGA--AAC-C-C-G-AAACCCGAAACCCGATAAACCCGAAAA
* * * * * *
1163087 CCGGAAACCGGAACCCCGAAACCC-GATAACCCGGACCCCGAAACCC-GA-AACCCCG--A--A-
54 CCGCAACCCGCAA-CCCGAAACCCGGAAAACCCGCA-ACCGAAACCCGGAGAA-CCCGAAACCAG
* * * *
1163144 AATCCCGAAATCTGAAACCCGAAATCCC-AAACCCGAATACCCG-TAAACTCCGAAACCCGAAAC
1 AAACCC-AAA-CCGAAACCCGAAA-CCCGAAACCCGAA-ACCCGATAAAC-CCGAAAACCGCAAC
* * * * * * *
1163207 CCGAAACCCGAAATCATCCCGAAATCCCCGTACCACCCGAAACCCGGATACCCCGAAACCCG
61 CCGCAACCCGAAA-C--CCGGAAA-ACCCG---CAACCGAAACCCGGAGAACCCGAAACCAG
*
1163269 AAACCCGAAACCCGAAACCCGAAA-CCGAAAGCCCG-AA-CCG-TAAACCCGAAACCCGACATAC
1 AAACCC-AAA-CCGAAACCCGAAACCCGAAA-CCCGAAACCCGATAAACCCGAAAACCG-CA-AC
* * * * * * * * *
1163330 CCGAGGAAACCGAAAACCCCGAAACCTCCCGAAACCCGATAA-TCGAAAAACCCGAAACCCG
61 CC--GCAACCCG-AAACCCGGAAA--ACCCGCAA-CCGA-AACCCGGAGAACCCGAAACCAG
* * * * *
1163391 AAAACCCGAAACCCGAAACCCGAACCCCGAAACCCAAAACCCGAGAAAACCCG-AACCCGGAAAC
1 -AAACCC-AAA-CCGAAACCCGAAACCCGAAACCCGAAACCCGA-TAAACCCGAAAACC-GCAAC
** * *
1163455 CCTAAACCCG-CACCC-G-AAACCCGGAAACCCGAAACCC-GA-AACCCGAAACC-G
61 CCGCAACCCGAAACCCGGAAAACCC-GCAA-CCGAAACCCGGAGAACCCGAAACCAG
*
1163506 AAAACTCCGAAACCGAAACCCGAAACCCGAAACCCGAAACCCGA-AAACCCGTAAGAGCC-CTAA
1 -AAAC-CC-AAACCGAAACCCGAAACCCGAAACCCGAAACCCGATAAACCCG-AA-AACCGC-AA
* * * * *
1163569 ACCGACAAACCCGAAACCC-GATAACCCGAAACCCGATAACCC-GAAAACCCGAAACCCG
60 CCCG-C-AACCCGAAACCCGGAAAACCCGCAA-CCGA-AACCCGGAGAACCCGAAACCAG
* * * * *
1163627 ATCACCCGAAACCCGAAACCCCG-AACCCGGAAACCCGAAACTCCGA-AATCCCCAAACCCGAAA
1 A-AACCC-AAA-CCGAAA-CCCGAAACCC-GAAACCCGAAAC-CCGATAAACCCGAAAACCGCAA
* * * *
1163690 CCCGAAAACCGTGAAGAAACCC-G-AAACCCGAAATCCCGAAACCCGGA-AACCCGAAACCCG
60 CCCG-CAACC----CGAAACCCGGAAAACCCGCAA--CCGAAACCCGGAGAACCCGAAACCAG
** *
1163750 AAACCCGAAATCCCGAAAACCTTAAACCCG-AACTCCG-AACCCG--AAACCCGAAACCCGCAAC
1 AAACCC-AAA--CCG-AAACCCGAAACCCGAAAC-CCGAAACCCGATAAACCCGAAAACCGCAA-
*
1163811 CCCGAAACCCGAAACCC-G-AAACCCGCAA
60 CCCGCAACCCGAAACCCGGAAAACCCGCAA
1163839 AACCCGAAAC
Statistics
Matches: 3044, Mismatches: 322, Indels: 981
0.70 0.07 0.23
Matches are distributed among these distances:
103 1 0.00
106 18 0.01
107 6 0.00
108 45 0.01
109 16 0.01
110 19 0.01
111 13 0.00
112 42 0.01
113 87 0.03
114 66 0.02
115 127 0.04
116 134 0.04
117 155 0.05
118 196 0.06
119 158 0.05
120 183 0.06
121 264 0.09
122 234 0.08
123 269 0.09
124 250 0.08
125 179 0.06
126 119 0.04
127 87 0.03
128 89 0.03
129 35 0.01
130 11 0.00
131 29 0.01
132 28 0.01
133 28 0.01
134 68 0.02
135 21 0.01
136 18 0.01
137 16 0.01
138 14 0.00
139 9 0.00
140 10 0.00
ACGTcount: A:0.41, C:0.39, G:0.15, T:0.05
Consensus pattern (115 bp):
AAACCCAAACCGAAACCCGAAACCCGAAACCCGAAACCCGATAAACCCGAAAACCGCAACCCGCA
ACCCGAAACCCGGAAAACCCGCAACCGAAACCCGGAGAACCCGAAACCAG
Found at i:1160797 original size:26 final size:26
Alignment explanation
Indices: 1160759--1160832 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 26
1160749 CCGATAACCC
1160759 GAAACCCGAAAACC-CGAATACCCGGG
1 GAAACCCGAAAACCTCGAA-ACCCGGG
1160785 GAAACCCCG-AAACCTCGAAACCC---
1 GAAA-CCCGAAAACCTCGAAACCCGGG
* *
1160808 GAAACTCGAATACCGTCGAAACCCG
1 GAAACCCGAAAACC-TCGAAACCCG
1160833 TAAACCAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
22 3 0.07
23 8 0.20
24 9 0.22
26 13 0.32
27 8 0.20
ACGTcount: A:0.38, C:0.36, G:0.19, T:0.07
Consensus pattern (26 bp):
GAAACCCGAAAACCTCGAAACCCGGG
Found at i:1164312 original size:21 final size:21
Alignment explanation
Indices: 1154605--1165703 Score: 5375
Period size: 22 Copynumber: 487.3 Consensus size: 21
1154595 AGGAGAGACA
*
1154605 GAAACCCG-AA-CCGAAACCG
1 GAAACCCGAAACCCGAAACCC
1154624 GAAACCCGAAAACCCGAAA-CC
1 GAAACCCG-AAACCCGAAACCC
1154645 GAAACCCGAAACCCG-AACTCC
1 GAAACCCGAAACCCGAAAC-CC
*
1154666 GAAACTCCGACACCCTGAAACTCC
1 GAAAC-CCGAAACCC-GAAAC-CC
*
1154690 GAACCCCGAAACCTCGTAAACCCC
1 GAAACCCGAAACC-CG-AAA-CCC
* *
1154714 GACACCCGTAAA-CCGAAAACC
1 GAAACCCG-AAACCCGAAACCC
* **
1154735 GCAACCC-AGCCCCCGAGAACCC
1 GAAACCCGA-AACCCGA-AACCC
1154757 GCAAACCCGAAACTCCGAAACCC
1 G-AAACCCGAAAC-CCGAAACCC
* *
1154780 GAAACCCTGGAAACACGTAACCC
1 GAAACCC--GAAACCCGAAACCC
1154803 GAAA--CGAAACCCGGAAAAACCC
1 GAAACCCGAAACCC-G--AAACCC
1154825 TGAAAACCCCGAAACCCCGAAACCC
1 -G-AAA-CCCGAAA-CCCGAAACCC
1154850 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1154871 G-AACCCGAAACCCGGAGAAATACCC
1 GAAACCCGAAACCC---G-AA-ACCC
1154896 GAAACCCGGGAAACCCGAAACCC
1 GAAACCC--GAAACCCGAAACCC
*
1154919 GGAACCCCGAAACCCGGAAACCC
1 -GAAACCCGAAACCC-GAAACCC
1154942 GAAACCCGAAA-CCGACAACCC
1 GAAACCCGAAACCCGA-AACCC
* *
1154963 GCCACACCCGAAAAACCCCGAATCCGCC
1 G--AAACCCG--AAA-CCCGAA-AC-CC
1154991 GAAACCTCGAAAACCCGAAACCC
1 GAAACC-CG-AAACCCGAAACCC
*
1155014 TGAAATCTCCAAAATTCCCGGAAAACCC
1 -GAAA-C-CCGAAA--CCC-G-AAACCC
*
1155042 GACAACCTCGAAACCCGAATAAACAC
1 GA-AACC-CGAAACCCG---AAACCC
1155068 GAAACCTCCGAAACCCGAAACCC
1 GAAA-C-CCGAAACCCGAAACCC
* *
1155091 GAATACCCTTG-AACCCTTAAAACC
1 GAA-ACCC--GAAACCC-GAAACCC
1155115 GAAAACCCGAAACCCGAAACCC
1 G-AAACCCGAAACCCGAAACCC
1155137 GAAA-CCGAAACCCGGAAACCCGC
1 GAAACCCGAAACCC-GAAA-CC-C
1155160 GGAAACCCGAAA-CCG-AACCC
1 -GAAACCCGAAACCCGAAACCC
*
1155180 G-CACCCGAAACCCGAAACCTC
1 GAAACCCGAAACCCGAAACC-C
*
1155201 GACACCCGAAACCCGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
*
1155223 GAAACCCGAAACACGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1155244 GGGCATAACCCGAAA--AGAAACCC
1 --G-A-AACCCGAAACCCGAAACCC
1155267 GGAAACCTCGAAACCCCGAAACCC
1 -GAAACC-CGAAA-CCCGAAACCC
*
1155291 GGATGAAACCCGAAACCCGCAACCC
1 ----GAAACCCGAAACCCGAAACCC
* *
1155316 GAACACACGAAACCCGCAACCC
1 GAA-ACCCGAAACCCGAAACCC
* *
1155338 GAAACCCTCAACAACACGAAAACCC
1 GAAA-CC-CGA-AACCCG-AAACCC
* *
1155363 GGAGGAAACCCGAAAAACCGCAACCCC
1 ----GAAACCCG-AAACCCG-AAACCC
1155390 GGATAACCCGAAACTCCGAAACCC
1 -GA-AACCCGAAAC-CCGAAACCC
1155414 GAAACCTCGAATATCCCGAAACCC
1 GAAACC-CGAA-A-CCCGAAACCC
1155438 GAAACTCCGAATACCCCGAAAACCC
1 GAAAC-CCGAA-A-CCCG-AAACCC
*
1155463 GAAACCCGAAAACCTCAAAACCC
1 GAAACCCG-AAACC-CGAAACCC
*
1155486 GCTAACCCG-AACCCGGAAA-CC
1 G-AAACCCGAAACCC-GAAACCC
*
1155507 GAAAACCGAACACCTCGAAACCC
1 GAAACCCGAA-ACC-CGAAACCC
1155530 GAAAAACTCCGAAACCCGAAACCC
1 G--AAAC-CCGAAACCCGAAACCC
1155554 GAAACCCG-AACCCGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
1155575 GTAAACCCGAAACCCGGAAACCC
1 G-AAACCCGAAACCC-GAAACCC
*
1155598 GGAAACCCGCAACCCCGGAAACCC
1 -GAAACCCG-AAACCC-GAAACCC
1155622 GAAACCCGAAA-CCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1155642 TGAAACCCGAAACCCGAAACCC
1 -GAAACCCGAAACCCGAAACCC
*
1155664 G-AA-CCGGAACCCGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
****
1155684 GAAACCCGAAACCCG-AGGGA
1 GAAACCCGAAACCCGAAACCC
*
1155704 AAAACCCGGCAAACCCGAAAACCC
1 GAAACCC-G-AAACCCG-AAACCC
1155728 GTAAACCCGAAAACCCTGAAAATCCC
1 G-AAACCCG-AAACCC-G-AAA-CCC
1155754 GAAAACCCGGGGAAACCCG-AACCC
1 G-AAACCC---GAAACCCGAAACCC
1155778 GAAACCCGAAACCCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
*
1155798 GATAAAATCCTGTAAACCCGTAACACCC
1 G---AAA-CCCG-AAACCCG-AA-ACCC
*
1155826 GAAGAAACCCGAAACCCG-ACCCC
1 ---GAAACCCGAAACCCGAAACCC
1155849 GAAATCCCG-AACTCCGAGAAACCC
1 GAAA-CCCGAAAC-CC--GAAACCC
1155873 GAAAAAACCCGAAACCCG-AACCC
1 G---AAACCCGAAACCCGAAACCC
1155896 GTGAAACCCGAAACCCGGTAAACCC
1 --GAAACCCGAAACCC-G-AAACCC
1155921 GAAA--CGAAAACCCCCGAAAAGACCC
1 GAAACCCG-AAA--CCCG--AA-ACCC
* *
1155946 GATACCGGTATAACCCGAAACCC
1 GAAACCCG-A-AACCCGAAACCC
*
1155969 GATAACCCGGTAA-CCGAATACCC
1 GA-AACCC-GAAACCCGAA-ACCC
1155992 GAATA-CCGAATAACTCCGAAACCC
1 GAA-ACCCG-A-AAC-CCGAAACCC
1156016 GAAACCCG-AACCCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
*
1156035 GCAACCCGAAACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
*
1156055 GAAAATCCCG-AACCCGACATCCC
1 G-AAA-CCCGAAACCCGA-AACCC
1156078 GAAACCTCCGAAACCCGAAAACCC
1 GAAA-C-CCGAAACCCG-AAACCC
*
1156102 G-AA--GGTAAACCCGAAACCC
1 GAAACCCG-AAACCCGAAACCC
*
1156121 GAAAACCCGCAACCCGAGATAACCC
1 G-AAACCCGAAACCC--GA-AACCC
*
1156146 GAAACCCGTAAACCAGAATACCGC
1 GAAACCCG-AAACCCGAA-ACC-C
*
1156170 TAAAACCCGAAACCCTGGAAACCC
1 -GAAACCCGAAACCC--GAAACCC
*
1156194 GAAA---GAAACCCGAATAAACC
1 GAAACCCGAAACCCG-A-AACCC
* *
1156214 GATAA-CCGAAAAACCGAAAAACC
1 GA-AACCCG-AAACCCG-AAACCC
*
1156237 GAAACTCG-AACCCGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
1156258 GAAACTCCGAAACCTGCGAGAACCC
1 GAAAC-CCGAAACC--CGA-AACCC
*
1156283 GAAAACCCGACA-CCGAACACCC
1 G-AAACCCGAAACCCGAA-ACCC
1156305 GAAATATCCCGAAATTGCCCGCAATACCC
1 G-AA-A-CCCGAAA---CCCG-AA-ACCC
1156334 GAAACCTCCGAAAACCCGAAATCCC
1 GAAA-C-CCG-AAACCCGAAA-CCC
*
1156359 GACACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1156380 GGAAAACCCGAAAACCCGAAACCC
1 -G-AAACCCG-AAACCCGAAACCC
1156404 GAAACCCGAAACCCGAAACTCC
1 GAAACCCGAAACCCGAAAC-CC
1156426 GAAACCCGAAAACCCGAAAACCC
1 GAAACCCG-AAACCCG-AAACCC
1156449 GAATACCCGAGAACCCGAAATCCC
1 GAA-ACCCGA-AACCCGAAA-CCC
* *
1156473 GAAAAACCGTCTTAATCCCGAAACCC
1 G--AAACC--C-GAAACCCGAAACCC
* *
1156499 GAGACCCAAAACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
1156519 GAGCAACCCGAAATCCCGAAACCC
1 GA--AACCCGAAA-CCCGAAACCC
* * * **
1156543 GATACCCCGACAATCCTAAA-AT
1 GA-AACCCGA-AACCCGAAACCC
* *
1156565 TAATCCCGAAACCCGAAAAACCC
1 GAAACCCGAAACCCG--AAACCC
1156588 GGGAAACCCGAAAACCCGAAACCC
1 --GAAACCCG-AAACCCGAAACCC
*
1156612 GAAATACCCGAACCCCGAAACCCC
1 G-AA-ACCCGAAACCCGAAA-CCC
1156636 GAAACGCCGGGAAA-CCGTAAACCTC
1 GAAAC-CC--GAAACCCG-AAACC-C
* *
1156661 GGAATGACCCTGAAA-CCGGACCCC
1 -GAA--ACCC-GAAACCCGAAACCC
* * *
1156685 GCAACCCGTACCCCGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
*
1156707 GAAACTCTCGAAATCCAGAAACCC
1 GAAAC-C-CGAAA-CCCGAAACCC
1156731 -AATACGTCCGAAACTCCGAAACCC
1 GAA-AC--CCGAAAC-CCGAAACCC
1156755 GGATAAACCCGAAACCCGAAACCC
1 -G--AAACCCGAAACCCGAAACCC
1156779 GAAACCCGACAAACCCGAAACCC
1 GAAACCCG--AAACCCGAAACCC
*
1156802 GAAAACCTCGAAACTCCGAATCCCC
1 G-AAACC-CGAAAC-CCGAA-ACCC
1156827 GTAAACCCGGAAAACCCCGAATA-CC
1 G-AAACCC-G-AAA-CCCGAA-ACCC
* *
1156852 GAAACCTCGAATCTTCCGATAATCCA
1 GAAACC-CGAAAC--CCGA-AA-CCC
**
1156878 GAAAATACGAAATCCCG-AACCTC
1 G-AAACCCGAAA-CCCGAAACC-C
1156901 GAAACCCGAAACTCCGTTAAACCC
1 GAAACCCGAAAC-CCG--AAACCC
1156925 TGAAACCCGATACACCTCG-AA-CC
1 -GAAACCCGA-A-ACC-CGAAACCC
*
1156948 GAAAACCGAAAACCCGAAACTCC
1 GAAACCCG-AAACCCGAAAC-CC
1156971 GAAACCCGAAAACCCGAAATCCC
1 GAAACCCG-AAACCCGAAA-CCC
1156994 GAAAACCCGTAAA-CCGAAACCC
1 G-AAACCCG-AAACCCGAAACCC
*
1157016 GGAAAACCCCGAAAACCTCGAACGCCC
1 -G-AAA-CCCG-AAACC-CGAA-ACCC
* *
1157043 GAAATATCCCGAAAAACCG-CACCC
1 G-AA-A-CCCG-AAACCCGAAACCC
* ***
1157067 GATACCCGGAAACCCG-AATTA
1 GAAACCC-GAAACCCGAAACCC
*
1157088 G-AACCCGAGACCCGACAAACCC
1 GAAACCCGAAACCCG--AAACCC
1157110 GAAACCCCGAAACCCGGAAACCC
1 GAAA-CCCGAAACCC-GAAACCC
*
1157133 GCAATAAACCGAAACCCGGGAATACCC
1 G--A-AACCCGAAACCC--GAA-ACCC
1157160 GAAACCCGTAAACCCGAAACCC
1 GAAACCCG-AAACCCGAAACCC
*
1157182 TGAAA-CCG-AACCGCTAATATAACCCGC
1 -GAAACCCGAAACC-C---GA-AA-CC-C
1157209 TGAAACCCGAAACCCGTAAACCC
1 -GAAACCCGAAACCCG-AAACCC
1157232 GTAAAACCCGAAA---GACAACCGTC
1 G--AAACCCGAAACCCGA-AACC--C
1157255 GAAACCCGATAACCCGAAACCC
1 GAAACCCGA-AACCCGAAACCC
1157277 GGAATACCCGAAAAACCTCGAAACCC
1 -GAA-ACCCG--AAACC-CGAAACCC
*
1157303 GAAACCCGAATCCCCG-AACCC
1 GAAACCCGAA-ACCCGAAACCC
* *
1157324 GAAATCCCGCACCCCG-AACCC
1 GAAA-CCCGAAACCCGAAACCC
1157345 GAATACCCTGAATACCCGAAACCC
1 GAA-ACCC-GAA-ACCCGAAACCC
*
1157369 GAAACCCGCAACCCGACAAACCC
1 GAAACCCGAAACCCG--AAACCC
1157392 GAAACTCCGAAACCCGCGAAACCC
1 GAAAC-CCGAAA-CC-CGAAACCC
1157416 GAATACCCGGGAAAACCCGAAACCC
1 GAA-ACCC--G-AAACCCGAAACCC
* *
1157441 GGAAACTCCGCAGCACCCGCTAACCC
1 -GAAAC-CCG-A-AACCCG-AAACCC
1157467 GAAACCCGAAACCCGGAAACCC
1 GAAACCCGAAACCC-GAAACCC
*
1157489 GAACCCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1157510 GGAAACCCGTAAACCCGAAACCC
1 -GAAACCCG-AAACCCGAAACCC
1157533 G-AACCCGAAACCCGAAACCGC
1 GAAACCCGAAACCCGAAACC-C
* *
1157554 GAATCCCGAAA-CCGAATACCT
1 GAAACCCGAAACCCGAA-ACCC
1157575 GAAACCCTGTAAAAACCTCGAAACACCC
1 GAAACCC-G---AAACC-CG-AA-ACCC
* *
1157603 GAACCCCGATAACACGAAACCC
1 GAAACCCGA-AACCCGAAACCC
*
1157625 GAAAACCCGCAACCCGAAACCC
1 G-AAACCCGAAACCCGAAACCC
**
1157647 GAAACCCCGAAACCCTAGGAAACAG
1 GAAA-CCCGAAACCC---GAAACCC
*
1157672 GAAAACCCTGAAACCCGAAAAACGC
1 G-AAACCC-GAAACCCG--AAACCC
*
1157697 GAATAAACCCTGAAACCCGATAACTCT
1 G---AAACCC-GAAACCCGA-AAC-CC
* *
1157724 GAAAATCCGAAACCCTGAAAACC
1 G-AAACCCGAAACCC-GAAACCC
1157747 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1157768 GGAAACCCGTAAACCTCGGGAAACCC
1 -GAAACCCG-AAACC-C--GAAACCC
1157794 GAAACCCGACGAAATCCCGAAATTCCC
1 GAAA-CC--CGAAA-CCCGAAA--CCC
1157821 GAAACTCCGAAACTCCTGAAAACCC
1 GAAAC-CCGAAAC-CC-G-AAACCC
1157846 GATATAATCCTCGAAACCCGGAAAACCC
1 G--A-AA-CC-CGAAACCC-G-AAACCC
1157874 GAAACCCGTGAAACCTCGAAACCC
1 GAAACCC--GAAACC-CGAAACCC
*
1157898 GCAA-CCG-AACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
*
1157916 GAAAACCCGCAACCCGAAACCC
1 G-AAACCCGAAACCCGAAACCC
*
1157938 GAAACCCGGGAAACCGCGATTACCC
1 GAAACCC--GAAACC-CGA-AACCC
1157963 GGAAATACTCCAGAAACCCCG-AACCC
1 -G-AA-AC-CC-GAAA-CCCGAAACCC
*
1157989 GAAACCCGAAAACCTCGGAACCC
1 GAAACCCG-AAACC-CGAAACCC
* *
1158012 GAAACACGGAACCCCGAAAACCC
1 GAAAC-CCGAAACCCG-AAACCC
*
1158035 GAAACCGGAAAAACCCGAAACCC
1 GAAACCCG--AAACCCGAAACCC
1158058 GAAAACCCCGAAACCCGAAA-CC
1 G-AAA-CCCGAAACCCGAAACCC
1158080 GAAACCCCGCATATAACCCG-AACCTGC
1 GAAA-CCCG---A-AACCCGAAACC--C
**
1158107 GAAACCCGGAAAACCCGTAATA-TA
1 GAAACCC-G-AAACCCG-AA-ACCC
* ** *
1158131 TATCCCTCGGAAAACTCGAAAACCC
1 GAAACC-C-G-AAACCCG-AAACCC
1158156 GAAAGCCCTGAAAACTCCCTGAAACCC
1 GAAA-CCC-G-AAA--CCC-GAAACCC
1158183 TGAAACCCGAAA-CCGAAAACCC
1 -GAAACCCGAAACCCG-AAACCC
1158205 GAAACCCTGGGAAACCCG-AACCC
1 GAAACCC---GAAACCCGAAACCC
*
1158228 GAAACCTCGGAAACCCTTAGAACCC
1 GAAACC-C-GAAACCC-GA-AACCC
1158253 TGAAAACCCGAAACCCGGAAACCC
1 -G-AAACCCGAAACCC-GAAACCC
1158277 GGAAAACCCGATGGAAACCCGAAACTCTC
1 -G-AAACCC----GAAACCCGAAAC-C-C
* *
1158306 GGACACCCGAAACCCGCAA-CC
1 -GAAACCCGAAACCCGAAACCC
* *
1158327 G-AACCTGAAACCCTAAA-CC
1 GAAACCCGAAACCCGAAACCC
1158346 GAAA-CCGAAAACCCGGAAACCC
1 GAAACCCG-AAACCC-GAAACCC
*
1158368 GGAACCCCTGAAACCCGAATAACTCC
1 -GAAACCC-GAAACCCG-A-AAC-CC
1158394 GAAACCCGAATACCCGGGTAAACCC
1 GAAACCCGAA-ACCC--G-AAACCC
* *
1158419 GGAACCCCGCATACCCGATTATACCC
1 -GAAACCCG-AAACCCGA--A-ACCC
*
1158445 GGAACCC-AAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
* * **
1158465 GAAACCCGATAATACC-ATGGA-GG
1 GAAACCCGA-AA-CCCGA--AACCC
*
1158488 GAAACCCGAAA-CCGAGAAACC
1 GAAACCCGAAACCCGA-AACCC
**
1158509 GTCAAACCCGCTACCTCCCGAAACCGC
1 G--AAACCCG--A-AACCCGAAACC-C
***
1158536 GAAACCCGCAAA-AAAAAACCC
1 GAAACCCG-AAACCCGAAACCC
*
1158557 GTAAACCCGAAACCCTAAACCC
1 G-AAACCCGAAACCCGAAACCC
1158579 GATAAACCCGAAACCCGAAA-CC
1 G--AAACCCGAAACCCGAAACCC
1158601 GAAACCTCGAAACCCCGGCAAACCC
1 GAAACC-CGAAA-CCC-G-AAACCC
* * *
1158626 -AAAACCGAAACCAGAAACCA
1 GAAACCCGAAACCCGAAACCC
*
1158646 GAAACTCTCGGAACCCCGAAACCC
1 GAAAC-C-C-GAAACCCGAAACCC
*
1158670 GAATACACGAAACGCCGGAAACCC
1 GAA-ACCCGAAAC-CC-GAAACCC
1158694 GATAACCCGAAACCCGAAACCC
1 GA-AACCCGAAACCCGAAACCC
1158716 TGAAACCCGAAA-CCGAAACCC
1 -GAAACCCGAAACCCGAAACCC
* *
1158737 GAAACCGAGAGGAAACCGAAAACCC
1 GAAACC-CGA--AACCCG-AAACCC
*
1158762 GAAACCCCGAAACCCGAAAACC
1 GAAA-CCCGAAACCCGAAACCC
*
1158784 G-AACCCGAAACCCTAAAACCC
1 GAAACCCGAAACCC-GAAACCC
*
1158805 GAAACCCGTACAACCCTAAAACCC
1 GAAACCCG-A-AACCC-GAAACCC
1158829 GTAAAAACCCGTAAACCCGAAACCC
1 G---AAACCCG-AAACCCGAAACCC
*
1158854 G-CA-CCGAAACCCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
*
1158872 GAAACCCGGATAACCC-TAACCC
1 GAAACCC-GA-AACCCGAAACCC
1158894 GAAA-CCGAAACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
*
1158913 G-AACCCGAAACACG-AACCC
1 GAAACCCGAAACCCGAAACCC
1158932 GGAAACCCCG-AACCCTGAAACCC
1 -GAAA-CCCGAAACCC-GAAACCC
1158955 GAAACCCGAAAACCCGAAACCC
1 GAAACCCG-AAACCCGAAACCC
*
1158977 GAAACCTCGCAAATCCGGAAACCC
1 GAAACC-CG-AAA-CCCGAAACCC
1159001 GAAACCCCAGGAAACCCTGATAACTCC
1 GAAA-CCC--GAAACCC-GA-AAC-CC
1159028 GAAACCCGAAACTCCGAAACCC
1 GAAACCCGAAAC-CCGAAACCC
1159050 TGAAAACCCGAAACCCGAAACCC
1 -G-AAACCCGAAACCCGAAACCC
1159073 G-AACCCGAATACTCCGAAACCC
1 GAAACCCGAA-AC-CCGAAACCC
1159095 GAAATCCCGAAAACCTCGAAACCC
1 GAAA-CCCG-AAACC-CGAAACCC
*
1159119 GAAGACCCG-AA-CCGAAACCT
1 GAA-ACCCGAAACCCGAAACCC
*
1159139 GAAAGCCCGCAATCCCGATAACCC
1 GAAA-CCCG-AAACCCGA-AACCC
* *
1159163 TATAATCCCGAGTAACCGGATAAACCC
1 GA-AA-CCCGA--AACCCG--AAACCC
1159190 GAGAACCCGAAACCCGGAAAATCCC
1 GA-AACCCGAAACCC-G-AAA-CCC
1159215 GAAACCCGAAACCCGGAAACTACC
1 GAAACCCGAAACCC-GAAAC--CC
1159239 GATAAACCCGAAACCCGAAAACCC
1 G--AAACCCGAAACCCG-AAACCC
1159263 GAAAATCCCGAAACTCTCGGGAAAACCCGC
1 G-AAA-CCCGAAAC-C-C--G-AAA-CC-C
1159293 GAAACCCGAATACCCG-AA-CC
1 GAAACCCGAA-ACCCGAAACCC
*
1159313 GAACCTCCGAAATCCCGAAAACCC
1 GAAAC-CCGAAA-CCCG-AAACCC
1159337 GAAACCTCGAAACCCGAATACTCC
1 GAAACC-CGAAACCCGAA-AC-CC
* *
1159361 -AATTCTC--AA-CCGAAACCCC
1 GAA-ACCCGAAACCCGAAA-CCC
*
1159380 GAAACCCGAAACCCGCAAACCT
1 GAAACCCGAAACCCG-AAACCC
1159402 GAAACCCGAAACCCCGAATACTCC
1 GAAACCCGAAA-CCCGAA-AC-CC
1159426 GTAATACCCGAATACCCGGATAACCC
1 G-AA-ACCCGAA-ACCC-GA-AACCC
* *
1159452 GAAAACCGGAAACTCCGAAAGACC
1 G-AAACCCGAAAC-CCGAAA-CCC
1159476 GAAACCCGAAACCCCGAAAAACACGC
1 GAAACCCGAAA-CCCG--AAAC-C-C
1159502 G-AACCCTGGAAACTCCGAAACCC
1 GAAACCC--GAAAC-CCGAAACCC
1159525 GAAACTCCGAAA---GAAA-CC
1 GAAAC-CCGAAACCCGAAACCC
1159543 GAAATCCCGAAACCCAAGAAATACCC
1 GAAA-CCCGAAACCC--G-AA-ACCC
1159569 GAAACCCTGGCAAACCCGAAACCC
1 GAAACCC--G-AAACCCGAAACCC
1159593 GAACACCCGAAACCCGATAACCC
1 GAA-ACCCGAAACCCGA-AACCC
1159616 G-AACCCGAATA-CCGAAATCCC
1 GAAACCCGAA-ACCCGAAA-CCC
1159637 GAAACCCGCAAACTCCGTAAACCC
1 GAAACCCG-AAAC-CCG-AAACCC
* *
1159661 GAAATGACTCCGGGACCCCG-AACCC
1 G-AA--AC-CC-GAAACCCGAAACCC
1159686 GTGAACACCC-AAACCCGAAACCC
1 --GAA-ACCCGAAACCCGAAACCC
1159709 GGAAACCCGAAACCTCGAAACCC
1 -GAAACCCGAAACC-CGAAACCC
1159732 GAAACCCGAAACCCGTAAACCC
1 GAAACCCGAAACCCG-AAACCC
* *
1159754 GAATACCCGAAACACGAAACCG
1 GAA-ACCCGAAACCCGAAACCC
1159776 GAATAACCCG-AACCCGAAACTCC
1 G-A-AACCCGAAACCCGAAAC-CC
1159799 GAAAAACCCG--ACCCGGAAATCCC
1 G--AAACCCGAAACCC-GAAA-CCC
1159822 GAATACCCG--ACCCGTGGAAAACCC
1 GAA-ACCCGAAACCC---G-AAACCC
1159846 GAAACCCCGAAACCCGATGTAAACCC
1 GAAA-CCCGAAACCC---G-AAACCC
1159872 -AAA-CCGAAAACCCGAAACCC
1 GAAACCCG-AAACCCGAAACCC
1159892 GAAACCCGAAACCCGATAAACCC
1 GAAACCCGAAACCCG--AAACCC
* * *
1159915 GAAAACCGCAACCCGCAACCC
1 GAAACCCGAAACCCGAAACCC
*
1159936 GAAACCCGGAAAACCCGCAA-CC
1 GAAACCC-G-AAACCCGAAACCC
*
1159958 GAAACCCGGAGTAACCCGAAACCA
1 GAAACCC-GA--AACCCGAAACCC
*
1159982 GAAACCCG-AA-CCGAAACCT
1 GAAACCCGAAACCCGAAACCC
*
1160001 GAAACCCGAAACCCGAATCCC
1 GAAACCCGAAACCCGAAACCC
* * *
1160022 GAAACCCGCAACCCTAACCTCC
1 GAAACCCGAAACCCGAAAC-CC
1160044 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1160065 GATTAAACCCGAAACCCGGAAACCC
1 G---AAACCCGAAACCC-GAAACCC
1160090 G-AA----AAACCCGTGAAAACCC
1 GAAACCCGAAACCC--G-AAACCC
*
1160109 GAAACCCGTAAACCCGCGAACCC
1 GAAACCCG-AAACCCG-AAACCC
**
1160132 GAAACCCGTAATACTCCGCCACCC
1 GAAACCCG-AA-AC-CCGAAACCC
*
1160156 TGGACACCCCTTTG-AACCCGAAACCC
1 --GA-AACCC---GAAACCCGAAACCC
*
1160182 GCAAACCCGAAACCCTTAAACCC
1 G-AAACCCGAAACCC-GAAACCC
*
1160205 GAAACCCGAAACCTCTTAAACCC
1 GAAACCCGAAACC-C-GAAACCC
* *
1160228 GAAAGCCGACACCCGATTAATCCC
1 GAAACCCGAAACCCGA--AA-CCC
1160252 GAAA-CCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1160272 GGAAA--CGAAACCCGAAACCC
1 -GAAACCCGAAACCCGAAACCC
* *
1160292 GAAGAAACCGGAAATCCCGGAAAACCA
1 ---GAAACCCGAAA-CCC-G-AAACCC
*
1160319 GAACCCCGAAACCCGGAATACCTC
1 GAAACCCGAAACCC-GAA-ACC-C
1160343 GAAAAGCCTCGAAACCCGGAAACCC
1 G-AAA-CC-CGAAACCC-GAAACCC
1160368 G-AACCCGAAAACTCCGAAA-CC
1 GAAACCCG-AAAC-CCGAAACCC
1160389 GAAA-CCGAAACCCGAAACCCC
1 GAAACCCGAAACCCGAAA-CCC
*
1160410 TAAAACCCGAAACCCGAAACCC
1 -GAAACCCGAAACCCGAAACCC
** *
1160432 GAAACCCTGTAAATACGAAACCG
1 GAAACCC-G-AAACCCGAAACCC
*
1160455 GATGAACCCGAGAACCCGAAACCTGGG
1 GA--AACCCGA-AACCCGAAACC---C
1160482 GAAACCCGATAA-CCGAAACCC
1 GAAACCCGA-AACCCGAAACCC
1160503 GAAACCCG-AACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1160523 GAATCCCGAAA-CCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
1160542 GAAA-CCGAAACCCGAAACCCC
1 GAAACCCGAAACCCGAAA-CCC
* *
1160563 GATAACCCGGAATCCAGTAAATTCCCC
1 GA-AACCC-GAAACCCG-AAA---CCC
1160590 GGAAAACCCGGAAAACCCGAAACCTC
1 -G-AAACCC-G-AAACCCGAAACC-C
*
1160616 GAAACCC-AAACCCTCAAACCC
1 GAAACCCGAAACCC-GAAACCC
1160637 GAGAAACCCGAAA-CCGAAACCC
1 --GAAACCCGAAACCCGAAACCC
1160659 GAAACCCGATAACCCGGAAACCCC
1 GAAACCCGA-AACCC-GAAA-CCC
*
1160683 GAAACCGGACAACCCGAGAACCC
1 GAAACCCGA-AACCCGA-AACCC
*
1160706 GATCAACCCGAAACCCGAAAACC
1 GA--AACCCGAAACCCGAAACCC
1160729 -AAACCCGATAACTCCGAAACCC
1 GAAACCCGA-AAC-CCGAAACCC
1160751 GATAACCCGAAACCCGAAAACCC
1 GA-AACCCGAAACCCG-AAACCC
1160774 GAATACCCGGGGAAACCCCGAAACCTC
1 GAA-ACCC---GAAA-CCCGAAACC-C
*
1160801 GAAACCCGAAACTCGAATACCGTC
1 GAAACCCGAAACCCGAA-ACC--C
*
1160825 GAAACCCGTAAACCAGATAACCC
1 GAAACCCG-AAACCCGA-AACCC
* *
1160848 GAAACCCGAACAAACCCGTACCCC
1 GAAACCCG---AAACCCGAAACCC
1160872 GGGAAACCCTGAAACCTTCGAAAACTCC
1 --GAAACCC-GAAACC--CG-AAAC-CC
1160900 GGATAAACCCGTAAAAACCCGGGATAAACCC
1 -G--AAACCCG---AAACCC--G--AAACCC
*
1160931 GATA-CCGATTTAAACCCG-AACCC
1 GAAACCCG----AAACCCGAAACCC
1160954 GAAAACCCTGAAGA---GAAACCTC
1 G-AAACCC-GAA-ACCCGAAACC-C
1160976 G-AACCTCAGAAACTCCGAAACCC
1 GAAACC-C-GAAAC-CCGAAACCC
1160999 GAAACCCGAAAACCCG-AACCC
1 GAAACCCG-AAACCCGAAACCC
*
1161020 TAAACCTC-AAACCCGAAACCC
1 GAAACC-CGAAACCCGAAACCC
1161041 GAAACCCGGAAA-CCGACAATCCC
1 GAAACCC-GAAACCCGA-AA-CCC
1161064 GAAACCCGAAAAACCCGAAA---
1 GAAACCCG--AAACCCGAAACCC
* *
1161084 TAAACTCGAAAACCCG-AACCC
1 GAAACCCG-AAACCCGAAACCC
1161105 GATAACCCGAAACCCGAAACCC
1 GA-AACCCGAAACCCGAAACCC
*
1161127 GAAAACCCG--A-CTGAAACACC
1 G-AAACCCGAAACCCGAAAC-CC
*
1161147 GACACTCCGAAACCCGAAACCC
1 GAAAC-CCGAAACCCGAAACCC
*
1161169 GAAAACCCGAATACCCGACAACCT
1 G-AAACCCGAA-ACCCGA-AACCC
1161193 GAAACCCGAAAACCCG-AACCC
1 GAAACCCG-AAACCCGAAACCC
1161214 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1161235 GAAAACCCGAAACCCGAAACCC
1 G-AAACCCGAAACCCGAAACCC
1161257 G-AA--CGAAACCCGAAACCCC
1 GAAACCCGAAACCCGAAA-CCC
1161276 GAAACCCGAAACCCGAACACCC
1 GAAACCCGAAACCCGAA-ACCC
* *
1161298 GAAATCCGATAACCCGAAATCCTGA
1 GAAACCCGA-AACCCGAAA-CC--C
1161323 GAAACCCGCGGAAATACCCTAGAAAACCC
1 GAAA-CC-C-G-AA-ACCC--G-AAACCC
*
1161352 GAAACCCGAAACGCTGAAACCC
1 GAAACCCGAAAC-CCGAAACCC
*
1161374 GACACCCG-AA-CCGATAACCC
1 GAAACCCGAAACCCGA-AACCC
1161394 GAAAACCCGAAACCCGAGAAACCC
1 G-AAACCCGAAACCC--GAAACCC
1161418 GATAACCCGAAAACCCGAAACCC
1 GA-AACCCG-AAACCCGAAACCC
*
1161441 GAAACCCGAAACCCGATAAACC
1 GAAACCCGAAACCCGA-AACCC
*
1161463 GAACCCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
* *
1161484 GAAACCAGAACACTCGAAACCC
1 GAAACCCGAA-ACCCGAAACCC
1161506 GGAAACCCGAAA-CCGAAACCC
1 -GAAACCCGAAACCCGAAACCC
1161527 GAATACCCGTAAAACCCGAAAAATGCCC
1 GAA-ACCCG--AAACCCG--AAA--CCC
1161555 GAAACCCGAAA-CCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
1161574 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
* *
1161595 GAAACCCCGAGACCCTAAACCCC
1 GAAA-CCCGAAACCCGAAA-CCC
*
1161618 GAAAACCTCGGAGAAACCCGAAACCG
1 G-AAACC-C---GAAACCCGAAACCC
1161644 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1161665 GAAACCC-AAACCGAGAATGCACCC
1 GAAACCCGAAACC-CGAA---ACCC
1161689 GAAACCCGAAACCCGAGAACCC
1 GAAACCCGAAACCCGA-AACCC
1161711 GAAACCCGAAAACCCGGGAAAACCC
1 GAAACCCG-AAACCC--G-AAACCC
1161736 GAAACCCGAAACCCGAGAA-CC
1 GAAACCCGAAACCCGA-AACCC
1161757 GAAATCCTCGAAACCCGAAATCCTC
1 GAAA-CC-CGAAACCCGAAA-CC-C
1161782 GACAACCCGAAA-CCG-AACCC
1 GA-AACCCGAAACCCGAAACCC
1161802 GAAACCCGGAAACCCGGAAACCC
1 GAAACCC-GAAACCC-GAAACCC
1161825 GAAATCCCGAAAACCCG-AA--C
1 GAAA-CCCG-AAACCCGAAACCC
1161845 GAAACCGCGAAACCCGACAACCCC
1 GAAACC-CGAAACCCGA-AA-CCC
1161869 GGAAAACCCGAAACCCG-AACACC
1 -G-AAACCCGAAACCCGAAAC-CC
* *
1161892 -AAACCCGTGAACCCGAAAACC
1 GAAACCCG-AAACCCGAAACCC
*
1161913 GAAACCCGAAA-CCGAAATCC
1 GAAACCCGAAACCCGAAACCC
*
1161933 GAAACCCCCGCATACCCCGAAACCC
1 GAAA--CCCG-A-AACCCGAAACCC
1161958 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1161979 GAAAACCCGAAACCCCGAACCCC
1 G-AAACCCGAAA-CCCGAAACCC
*
1162002 GAAACTCCGATAACCCGGAAAACC
1 GAAAC-CCGA-AACCC-GAAACCC
* **** **
1162026 TATGGTC-ACCCCCTGAAAACCC
1 GAAACCCGAAACCC-G-AAACCC
*
1162048 GTAAACTCGTAAACCCG-AA-CC
1 G-AAACCCG-AAACCCGAAACCC
1162069 GAAAACCCGAAAACCCGAAACCC
1 G-AAACCCG-AAACCCGAAACCC
1162092 GAAACCCGAAACCCTGAAACCC
1 GAAACCCGAAACCC-GAAACCC
1162114 GAAACCCGAAACCCGATAACCC
1 GAAACCCGAAACCCGA-AACCC
*
1162136 -TAACCCGTAAACCCGAAAACCC
1 GAAACCCG-AAACCCG-AAACCC
*
1162158 GACACCCGAAACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
*
1162178 GAAACCCGAACCCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1162199 GAGAA-CCGAAAACCCCGAATACCC
1 GA-AACCCG-AAA-CCCGAA-ACCC
1162223 --AACCCTGATCAAACCCGAAACCC
1 GAAACCC-G---AAACCCGAAACCC
1162246 GAAACCCGAAACCTCGAAACCC
1 GAAACCCGAAACC-CGAAACCC
1162268 GGAAACCCGAAACCCG-AACTCC
1 -GAAACCCGAAACCCGAAAC-CC
*
1162290 GATACCCGAACACCCGAAA-CC
1 GAAACCCGAA-ACCCGAAACCC
*
1162311 GAAACCCAAAACCCGCGAAACCC
1 GAAACCCGAAA-CC-CGAAACCC
1162334 GAAAACCCGTAAACCCG-AACTCC
1 G-AAACCCG-AAACCCGAAAC-CC
1162357 TGAAACCCGAAAACCTCGAAACCC
1 -GAAACCCG-AAACC-CGAAACCC
1162381 GAAACCCGAAAACCCGTAAAACCC
1 GAAACCCG-AAACCCG--AAACCC
*
1162405 GAGAACCAGGGAAACCCGAAACCC
1 GA-AACC--CGAAACCCGAAACCC
1162429 GAAACCCGAAA-CCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1162449 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1162470 GAAACCCGAAACCCGAGTAACCCC
1 GAAACCCGAAACCCGA--AA-CCC
1162494 TGAAACCTCGAAATCCCGAAACCCC
1 -GAAACC-CGAAA-CCCGAAA-CCC
1162519 GTGAATACTCCGGAAACCCGAACACCC
1 --GAA-AC-CC-GAAACCCGAA-ACCC
1162546 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1162567 GAATACCGGAAAACCCGAAAACCC
1 GAA-ACCCG-AAACCCG-AAACCC
*
1162591 GAAACCCCGAAACCCGGAACCC
1 GAAA-CCCGAAACCCGAAACCC
*
1162613 GAAACCCGAAACCCGAAAACC
1 GAAACCCGAAACCCGAAACCC
*
1162634 GAAACCCGAATACCCTGCAACCC
1 GAAACCCGAA-ACCC-GAAACCC
* * *
1162657 GCTAACCCGAATCCCTGAGAAACCTA
1 G-AAACCCGAAACCC---GAAACC-C
* *
1162683 GAAACCCGAAAACCG-CACCTC
1 GAAACCCGAAACCCGAAACC-C
*
1162704 -AAACCCGAAACCGGAAA-CC
1 GAAACCCGAAACCCGAAACCC
*
1162723 GAAACTCTCGTAAAAACCGAAA---
1 GAAAC-C-CG--AAACCCGAAACCC
*
1162745 AAAACCCGAAACCCGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
*
1162767 GAAACCCGAAAACCCGAAACAC
1 GAAACCCG-AAACCCGAAACCC
*
1162789 GAAATACCCGGAAACCCTAAACCC
1 G-AA-ACCC-GAAACCCGAAACCC
**
1162813 GAAA-CCGACCCCCGTAAACCGTTC
1 GAAACCCGAAACCCG-AAACC---C
* *
1162837 GAAACCCTAAACCCGAACCCC
1 GAAACCCGAAACCCGAAACCC
*
1162858 GAAACCCGGAAACCTGAAATACTCC
1 GAAACCC-GAAACCCG-AA-AC-CC
1162883 GAAACCCGAAAACCCGAAACCC
1 GAAACCCG-AAACCCGAAACCC
*
1162905 GGTAAAACCCGAGATACCCGGAACCC
1 -G--AAACCCGA-A-ACCCGAAACCC
1162931 GGAAACTCCCTGGAAAACCCGAAAACCCC
1 -GAAA--CCC--G-AAACCCG-AAA-CCC
1162960 GAAA-CCGAAACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
1162979 GCAAACCCGAAACCCGAAACCC
1 G-AAACCCGAAACCCGAAACCC
1163001 GAAACCCGAAA-CCGCAAACCC
1 GAAACCCGAAACCCG-AAACCC
1163022 GAGAAATCCCCGGAAACCCGGAAA--C
1 --GAAA--CCC-GAAACCC-GAAACCC
*
1163047 GACTACCGCGCGGAAAACCCGAAACCC
1 GA--AAC-C-C-G-AAACCCGAAACCC
*
1163074 GAAAACCCGAAACCCGGAAACCG
1 G-AAACCCGAAACCC-GAAACCC
*
1163097 GAACCCCGAAACCCGATAACCC
1 GAAACCCGAAACCCGA-AACCC
* *
1163119 GGACCCCGAAACCCGAAACCCC
1 GAAACCCGAAACCCGAAA-CCC
* *
1163141 GAAAATCCCGAAATCTGAAACCC
1 G-AAA-CCCGAAACCCGAAACCC
1163164 GAAATCCC-AAACCCGAATACCC
1 GAAA-CCCGAAACCCGAA-ACCC
1163186 GTAAACTCCGAAACCCGAAACCC
1 G-AAAC-CCGAAACCCGAAACCC
1163209 GAAACCCGAAATCATCCCGAAATCCCC
1 GAAACCCG-AA--A-CCCGAAA--CCC
* *
1163236 GTACCACCCGAAACCCGGATACCCC
1 G-A-AACCCGAAACCC-GA-AACCC
1163261 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1163282 GAAACCCGAAA-CCGAAAGCCC
1 GAAACCCGAAACCCGAAA-CCC
1163303 G-AA-CCGTAAACCCGAAACCC
1 GAAACCCG-AAACCCGAAACCC
*
1163323 GACATACCCGAGGAAACCGAAAACCCC
1 GA-A-ACCCGA--AACCCG-AAA-CCC
*
1163350 GAAACCTCCCGAAACCCGATAA-TC
1 GAAA---CCCGAAACCCGA-AACCC
1163374 GAAAAACCCGAAACCCGAAAACCC
1 G--AAACCCGAAACCCG-AAACCC
*
1163398 GAAACCCGAAACCCGAACCCC
1 GAAACCCGAAACCCGAAACCC
*
1163419 GAAACCCAAAACCCGAGAAAACCC
1 GAAACCCGAAACCC--G-AAACCC
*
1163443 G-AACCCGGAAACCCTAAACCC
1 GAAACCC-GAAACCCGAAACCC
*
1163464 G-CACCCGAAACCCGGAAACCC
1 GAAACCCGAAACCC-GAAACCC
1163485 GAAACCCGAAACCCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
1163505 GAAAACTCCGAAA-CCGAAACCC
1 G-AAAC-CCGAAACCCGAAACCC
1163527 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1163548 GAAAACCCGTAAGAGCCCTAAA-CC
1 G-AAACCCG-AA-A-CCCGAAACCC
1163572 GACAAACCCGAAACCCGATAACCC
1 G--AAACCCGAAACCCGA-AACCC
1163596 GAAACCCGATAACCCGAAAACCC
1 GAAACCCGA-AACCCG-AAACCC
*
1163619 GAAACCCGATCACCCGAAACCC
1 GAAACCCGA-AACCCGAAACCC
1163641 GAAACCCCG-AACCCGGAAACCC
1 GAAA-CCCGAAACCC-GAAACCC
*
1163663 GAAACTCCGAAATCCCCAAACCC
1 GAAAC-CCGAAA-CCCGAAACCC
* *
1163686 GAAACCCGAAAACCGTGAA---
1 GAAACCCGAAACCCG-AAACCC
1163705 GAAACCCGAAACCCGAAATCCC
1 GAAACCCGAAACCCGAAA-CCC
1163727 GAAACCCGGAAACCCGAAACCC
1 GAAACCC-GAAACCCGAAACCC
*
1163749 GAAACCCGAAATCCCGAAAACCT
1 GAAACCCGAAA-CCCG-AAACCC
*
1163772 TAAACCCG-AACTCCG-AACCC
1 GAAACCCGAAAC-CCGAAACCC
*
1163792 GAAACCCGAAACCCGCAACCCC
1 GAAACCCGAAACCCG-AAACCC
1163814 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1163835 GCAAAACCCGAAACCCG-AACCC
1 G--AAACCCGAAACCCGAAACCC
1163857 GACAAACCCGAAACCCCGGAAACCCC
1 G--AAACCCGAAA-CCC-GAAA-CCC
* * * *
1163883 TAACCCCGAACCCTCGAACCCC
1 GAAACCCGAAACC-CGAAACCC
* *
1163905 GAACCCCGAACCCCCGAAACCC
1 GAAACCCGAA-ACCCGAAACCC
1163927 GAAACCCGAAACCCGAAA-CC
1 GAAACCCGAAACCCGAAACCC
* * *
1163947 GAACCCCGAACCCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
1163968 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1163989 TTAAA-CGGAAATCCAGAAA-CC
1 -GAAACCCGAAA-CCCGAAACCC
* *
1164010 GAAAACCCGAAAACACG-AACAC
1 G-AAACCCG-AAACCCGAAACCC
* *
1164032 GAAACCCTGAAAACCCTAAAACAC
1 GAAACCC-G-AAACCC-GAAACCC
* *
1164056 GAAAACCGAAACCGGAAAACCC
1 GAAACCCGAAACCCG-AAACCC
* *
1164078 GAAACCAGTAAAACCCCTAAACCTC
1 GAAACCCG--AAA-CCCGAAACC-C
* **
1164103 GAAAAACCG-AACCCGAAACAA
1 G-AAACCCGAAACCCGAAACCC
* * *
1164124 GAAAACTCGAAACACGACA-CC
1 G-AAACCCGAAACCCGAAACCC
* * *
1164145 TAAACGCCTACA-CCGAAAACCC
1 GAAAC-CCGAAACCCG-AAACCC
* * *
1164167 GAAATCCTAAACCCGGAACCC
1 GAAACCCGAAACCCGAAACCC
1164188 GAAAACCCGAAACCCG-AACCC
1 G-AAACCCGAAACCCGAAACCC
** * *
1164209 GAAACCTTAAACCAGATACCC
1 GAAACCCGAAACCCGAAACCC
1164230 GAAACCCGAAACCCTGATAAAACCC
1 GAAACCCGAAACCC-G---AAACCC
1164255 GAAACCCGAAACCCGGAAACCC
1 GAAACCCGAAACCC-GAAACCC
*
1164277 GAAACCCGAAAACCCGATAAACC
1 GAAACCCG-AAACCCGA-AACCC
* *
1164300 GAAA-CCTAAACCCGAAACCA
1 GAAACCCGAAACCCGAAACCC
* * * *
1164320 TAAATCCGAAAACCTAAACACC
1 GAAACCCGAAACCCGAAAC-CC
* *
1164342 GAACAACAG-AACCCGAAAAACCC
1 GAA-ACCCGAAACCCG--AAACCC
* *
1164365 GAAACACAGAAA-CCG-AACCAT
1 GAAAC-CCGAAACCCGAAACC-C
* * *
1164386 AAAACCTGAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* *
1164407 TAAACCCGAAACCCCTAAAACCC
1 GAAACCCGAAA-CCC-GAAACCC
* *
1164430 TAAACCCGAAACCCTTAAACCC
1 GAAACCCGAAACCC-GAAACCC
* **
1164452 GTTAA-CCGATAACCCTTAACCC
1 G-AAACCCGA-AACCCGAAACCC
* * * *
1164474 TTAATAACCCTAAACCCTAAACCT
1 --GA-AACCCGAAACCCGAAACCC
* ** * *
1164498 TAAACCCCTTAACCCTAAATCCT
1 GAAA-CCCGAAACCCGAAA-CCC
* * *
1164521 TAAACCCTAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * * *
1164542 TAAACGCC-TAACCCTAAAACC
1 GAAAC-CCGAAACCCGAAACCC
* ** ** **
1164563 TAAACCTACCTTAACCTTACCCCTAC
1 GAAA-C--CCGAAACCCGAAACC--C
* * *
1164589 TAAACCCTAAA-CC-TAACCTTAC
1 GAAACCCGAAACCCGAAACC---C
* * *
1164611 AAAACCCTAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1164632 TAAACCCTAAAACCCTAAACCCC
1 GAAACCC-GAAACCCGAAA-CCC
* *
1164655 TTAAACCCGAAACCCTAAACCC
1 -GAAACCCGAAACCCGAAACCC
* * *
1164677 TAAACCCTAAACCCTAAAACCC
1 GAAACCCGAAACCC-GAAACCC
** ** *
1164699 CTAACCCTCAACCCTAAAAACCC
1 GAAACCCGAAACCC--GAAACCC
* * *
1164722 TAAAACCCTAAACCCTAAACCC
1 -GAAACCCGAAACCCGAAACCC
* * *
1164744 TTAAACCCTAAAACCCTAAACCC
1 -GAAACCC-GAAACCCGAAACCC
* * *
1164767 TAAACCC-TAACCCTAAAACCC
1 GAAACCCGAAACCC-GAAACCC
* * *
1164788 TAAACCCTTAAACCCTAAAACCC
1 GAAACCC-GAAACCC-GAAACCC
* * *
1164811 TAAACCCTAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1164832 TAATAAACCCTAAACCCCTTAAACCC
1 ---GAAACCCGAAA-CCC-GAAACCC
* * *
1164858 CAAACCCCAAAACCCACCAAAACCCC
1 GAAA-CCCGAAA--C-CCGAAA-CCC
* * *
1164884 AAAACCCCAAACCCCAAACCC
1 GAAACCCGAAACCCGAAACCC
* *
1164905 -AAACCCAAAACCC-TAACCC
1 GAAACCCGAAACCCGAAACCC
* * * * *
1164924 TAACCCCTAACCCCTAAACCTC
1 GAAACCCGAAACCCGAAACC-C
* *
1164946 --AACCCTAAACCCCTAAACCC
1 GAAACCCGAAA-CCCGAAACCC
* ** * *
1164966 -TAACCCCTAACCCTAACCCC
1 GAAACCCGAAACCCGAAACCC
* * *
1164986 TAAACCCTAAACCCCTAAACCC
1 GAAACCCGAAA-CCCGAAACCC
* * *
1165008 TAAACCCTAAAACCCTAAACCC
1 GAAACCC-GAAACCCGAAACCC
* * *
1165030 TAAACCCTAAACCCTAAAACCCC
1 GAAACCCGAAACCC-GAAA-CCC
* * *
1165053 TAAACCCTAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165074 -TAACCCTAAAACCC-TAACCC
1 GAAACCC-GAAACCCGAAACCC
* *
1165094 TAAACCCGTAAACCCTAAACCC
1 GAAACCCG-AAACCCGAAACCC
* * *
1165116 TAAACCCTAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* ** *
1165137 -TAACCCCTAACCCCAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165157 -TAACCCTAAACCCTAAAACCC
1 GAAACCCGAAACCC-GAAACCC
* **
1165178 -TAACCC-ATAACCCCTAACCC
1 GAAACCCGA-AACCCGAAACCC
** * *
1165198 -CCACCC-TAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* *
1165217 -AAACCC-TAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165236 TAAACCCTAAACCCTAAACCCC
1 GAAACCCGAAACCCGAAA-CCC
* ** *
1165258 TAAACCCCTAACCCTAAAACCC
1 GAAACCCGAAACCC-GAAACCC
* * *
1165280 TAAACCCTAAACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * * * *
1165301 TAAACCCTAGACCCTAGACCC
1 GAAACCCGAAACCCGAAACCC
* * * * * *
1165322 TAGACCCTAGACCCTAGACCC
1 GAAACCCGAAACCCGAAACCC
* * * * * *
1165343 TAGACCCTAGACCCTAGACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165364 CAAACCCCAAACCCCAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165385 CAAACCCCAAACCCCAAACCC
1 GAAACCCGAAACCCGAAACCC
* * * * * *
1165406 CAGACCCCAGACCCCAGACCC
1 GAAACCCGAAACCCGAAACCC
* * * * * *
1165427 CAGACCCCAGACCCCAGACCC
1 GAAACCCGAAACCCGAAACCC
* * * * * *
1165448 CAGACCCTAACCCCTCAACCCC
1 GAAACCCGAAACCC-GAAACCC
** ** **
1165470 TCAACCCTCAACCCTCAACCC
1 GAAACCCGAAACCCGAAACCC
** ** **
1165491 TCAACCCTCAACCCTCAACCC
1 GAAACCCGAAACCCGAAACCC
** ** **
1165512 TCAACCCTCAACCCTCAACCC
1 GAAACCCGAAACCCGAAACCC
1165533 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
1165554 GAAACCCGAAACCCGAAACCC
1 GAAACCCGAAACCCGAAACCC
*
1165575 GAACCCCG-AACCCG-AACCC
1 GAAACCCGAAACCCGAAACCC
*
1165594 G-AACCCG-AACCCTAAACCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165613 TAAACCCTAAACCCGAACCCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165634 GAACCCCGAACCCCGAACCCC
1 GAAACCCGAAACCCGAAACCC
* * *
1165655 GAACCCCGAACCCCGAACCCC
1 GAAACCCGAAACCCGAAACCC
* *
1165676 GAACCCCG-AACCCTAAAACCC
1 GAAACCCGAAACCC-GAAACCC
*
1165697 TAAACCC
1 GAAACCC
1165704 TAATCTTGAA
Statistics
Matches: 9014, Mismatches: 828, Indels: 2474
0.73 0.07 0.20
Matches are distributed among these distances:
17 6 0.00
18 71 0.01
19 286 0.03
20 705 0.08
21 1579 0.18
22 1720 0.19
23 1459 0.16
24 1266 0.14
25 856 0.09
26 459 0.05
27 321 0.04
28 191 0.02
29 72 0.01
30 4 0.00
31 12 0.00
32 7 0.00
ACGTcount: A:0.40, C:0.40, G:0.14, T:0.06
Consensus pattern (21 bp):
GAAACCCGAAACCCGAAACCC
Found at i:1164366 original size:23 final size:24
Alignment explanation
Indices: 1164335--1164381 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1164325 CCGAAAACCT
*
1164335 AAACACCG-AACAACAGAACCCGAA
1 AAACACCGAAAC-ACAGAAACCGAA
1164359 AAAC-CCGAAACACAGAAACCGAA
1 AAACACCGAAACACAGAAACCGAA
1164382 CCATAAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.55, C:0.32, G:0.13, T:0.00
Consensus pattern (24 bp):
AAACACCGAAACACAGAAACCGAA
Found at i:1165791 original size:21 final size:21
Alignment explanation
Indices: 1165475--1165796 Score: 87
Period size: 21 Copynumber: 15.3 Consensus size: 21
1165465 ACCCCTCAAC
*
1165475 CCTC-AACCCTCAACCCTCAAC
1 CCTCGAACCCTCAACCC-CAAA
*
1165496 CCTC-AACCCTCAACCCTCAAC
1 CCTCGAACCCTCAACCC-CAAA
*
1165517 CCTC-AACCCTCAACCCGAAA
1 CCTCGAACCCTCAACCCCAAA
** *
1165537 CC-CGAAACCCGAAACCCGAAA
1 CCTCG-AACCCTCAACCCCAAA
* * *
1165558 CC-CGAAACCC-GAAACCCGAA
1 CCTCG-AACCCTCAACCCCAAA
* * *
1165578 CCCCGAACCC-GAA-CCCGAA
1 CCTCGAACCCTCAACCCCAAA
* *
1165597 CC-CGAACCCTAAACCCTAAA
1 CCTCGAACCCTCAACCCCAAA
* * *
1165617 CC-CTAAACCC-GAACCCCGAA
1 CCTC-GAACCCTCAACCCCAAA
* *
1165637 CCCCGAACCC-CGAACCCCGAA
1 CCTCGAACCCTC-AACCCCAAA
* *
1165658 CCCCGAACCC-CGAACCCCGAA
1 CCTCGAACCCTC-AACCCCAAA
* * *
1165679 CCCCGAACCCTAAAACCCTAAA
1 CCTCGAACCCT-CAACCCCAAA
** * * *
1165701 CCCTAATCTTGAATACTAAAAGCCCGAA
1 -CC---TC--GAACCCT-CAACCCCAAA
** *
1165729 CCTCGAA-CCGAAAACCCAAA
1 CCTCGAACCCTCAACCCCAAA
* * * *
1165749 ACTAGAACCTTGAACCCCAAA
1 CCTCGAACCCTCAACCCCAAA
1165770 CCTCGAACCCTCAACCCCAAA
1 CCTCGAACCCTCAACCCCAAA
1165791 CCTCGA
1 CCTCGA
1165797 TCCTCGATCC
Statistics
Matches: 244, Mismatches: 40, Indels: 34
0.77 0.13 0.11
Matches are distributed among these distances:
18 7 0.03
19 11 0.05
20 54 0.22
21 142 0.58
22 10 0.04
23 2 0.01
24 2 0.01
26 1 0.00
27 2 0.01
28 13 0.05
ACGTcount: A:0.36, C:0.47, G:0.09, T:0.08
Consensus pattern (21 bp):
CCTCGAACCCTCAACCCCAAA
Found at i:1165801 original size:7 final size:7
Alignment explanation
Indices: 1165791--1165859 Score: 70
Period size: 7 Copynumber: 9.9 Consensus size: 7
1165781 CAACCCCAAA
1165791 CCTCGAT
1 CCTCGAT
1165798 CCTCGAT
1 CCTCGAT
*
1165805 CCCCGAT
1 CCTCGAT
*
1165812 CCCCGAT
1 CCTCGAT
1165819 CCTCGAT
1 CCTCGAT
*
1165826 CC-CAAAT
1 CCTC-GAT
*
1165833 CCCCGAT
1 CCTCGAT
1165840 CCT-GAAT
1 CCTCG-AT
1165847 CCTCGAT
1 CCTCGAT
1165854 CCTCGA
1 CCTCGA
1165860 ACCCCGAATC
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
6 2 0.04
7 49 0.92
8 2 0.04
ACGTcount: A:0.19, C:0.46, G:0.13, T:0.22
Consensus pattern (7 bp):
CCTCGAT
Found at i:1165811 original size:14 final size:14
Alignment explanation
Indices: 1165794--1165871 Score: 70
Period size: 14 Copynumber: 5.5 Consensus size: 14
1165784 CCCCAAACCT
1165794 CGATCCTCGATCCC
1 CGATCCTCGATCCC
* *
1165808 CGATCCCCGATCCT
1 CGATCCTCGATCCC
*
1165822 CGATCC-CAAATCCC
1 CGATCCTC-GATCCC
*
1165836 CGATCCT-GAATCCT
1 CGATCCTCG-ATCCC
*
1165850 CGATCCTCGAACCC
1 CGATCCTCGATCCC
1165864 CGAATCCT
1 CG-ATCCT
1165872 AAACCCTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 1 0.02
14 44 0.86
15 6 0.12
ACGTcount: A:0.21, C:0.46, G:0.13, T:0.21
Consensus pattern (14 bp):
CGATCCTCGATCCC
Found at i:1165848 original size:21 final size:21
Alignment explanation
Indices: 1165785--1165842 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
1165775 AACCCTCAAC
*
1165785 CCCAAA-CCTCGATCCTCGAT
1 CCCAAATCCCCGATCCTCGAT
**
1165805 CCCCGATCCCCGATCCTCGAT
1 CCCAAATCCCCGATCCTCGAT
1165826 CCCAAATCCCCGATCCT
1 CCCAAATCCCCGATCCT
1165843 GAATCCTCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 4 0.12
21 28 0.88
ACGTcount: A:0.21, C:0.50, G:0.10, T:0.19
Consensus pattern (21 bp):
CCCAAATCCCCGATCCTCGAT
Found at i:1165904 original size:15 final size:14
Alignment explanation
Indices: 1165866--1165905 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
1165856 TCGAACCCCG
1165866 AATCCTAAACCCTA
1 AATCCTAAACCCTA
1165880 AATCCTAAACTCCTA
1 AATCCTAAAC-CCTA
1165895 AA-CCTGAAACC
1 AATCCT-AAACC
1165906 TCAAACTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.42, C:0.35, G:0.03, T:0.20
Consensus pattern (14 bp):
AATCCTAAACCCTA
Found at i:1165918 original size:14 final size:14
Alignment explanation
Indices: 1165901--1165964 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
1165891 CCTAAACCTG
1165901 AAACCTCAAACTCA
1 AAACCTCAAACTCA
* *
1165915 AAACC-CGAAACACG
1 AAACCTC-AAACTCA
*
1165929 AAA-CTCAAAACTTA
1 AAACCTC-AAACTCA
*
1165943 AAACC-CAAACTCT
1 AAACCTCAAACTCA
1165956 AAACCTCAA
1 AAACCTCAA
1165965 GCCTCAAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
13 12 0.32
14 25 0.66
15 1 0.03
ACGTcount: A:0.52, C:0.33, G:0.03, T:0.12
Consensus pattern (14 bp):
AAACCTCAAACTCA
Found at i:1165924 original size:21 final size:21
Alignment explanation
Indices: 1165872--1165980 Score: 64
Period size: 21 Copynumber: 5.2 Consensus size: 21
1165862 CCCGAATCCT
* *
1165872 AAACCCTAAATCCT-AAACTCCT
1 AAACCCGAAA-CCTCAAACT-CA
*
1165894 AAACCTGAAACCTCAAACTCA
1 AAACCCGAAACCTCAAACTCA
*
1165915 AAACCCGAAACAC-GAAACTCA
1 AAACCCGAAAC-CTCAAACTCA
*** *
1165936 AAACTTAAAACC-CAAACTCT
1 AAACCCGAAACCTCAAACTCA
* *
1165956 AAACCTC-AAGCCTCAAACTCC
1 AAACC-CGAAACCTCAAACTCA
1165977 AAAC
1 AAAC
1165981 TCTAAACTCG
Statistics
Matches: 69, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
20 15 0.22
21 40 0.58
22 14 0.20
ACGTcount: A:0.47, C:0.35, G:0.04, T:0.15
Consensus pattern (21 bp):
AAACCCGAAACCTCAAACTCA
Done.