Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2260
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24466
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Found at i:565 original size:173 final size:174
Alignment explanation
Indices: 1--1007 Score: 1863
Period size: 173 Copynumber: 5.8 Consensus size: 174
1 CGCATTG-AGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
1 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
*
65 CGCTAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
66 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
130 A-TTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
131 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
173 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
1 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
*
238 CGCTAATGCGTTAAC---ATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
66 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
300 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
131 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
*
344 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCTAGT-CGTCTATCTGTTGTAGATAAC
1 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
408 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
66 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
473 A-TTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
131 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
*
516 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTTCGTCTATCTGTTGTAGATAAC
1 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
*
581 CGCTAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
66 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
646 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
131 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
*
690 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCTAGTCCGTCTATCTGTTGTAGATAAC
1 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
755 CGATAATGCGTTAAC-TAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
66 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
819 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
131 ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
* *
863 CGCATTGAAGGTTTATTTGCCGTGTAGACGGTCTTGCCCTAGTCCGTCTATCTGTTGTAGATAAC
1 CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
928 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTG-AAATGCTATGAGTACACATTCAGGTA
66 CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
992 ATTTTT-TATATATATG
131 ATTTTTCT-TATATATG
1008 AGATGGTTTT
Statistics
Matches: 818, Mismatches: 8, Indels: 17
0.97 0.01 0.02
Matches are distributed among these distances:
170 83 0.10
171 84 0.10
172 92 0.11
173 418 0.51
174 141 0.17
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (174 bp):
CGCATTGAAGGTTTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAAC
CGATAATGCGTTAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTA
ATTTTTCTTATATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
Found at i:4566 original size:1 final size:1
Alignment explanation
Indices: 4562--4595 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
4552 GCACATAAAG
* *
4562 AAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4596 CGTTGCACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:4596 original size:13 final size:12
Alignment explanation
Indices: 4562--4594 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
4552 GCACATAAAG
4562 AAAAAAAAACAA
1 AAAAAAAAACAA
4574 AAAAAAAAACAA
1 AAAAAAAAACAA
4586 AAAAAAAAA
1 AAAAAAAAA
4595 ACGTTGCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:11732 original size:23 final size:23
Alignment explanation
Indices: 11697--11765 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 23
11687 ACAAGAAAAA
*
11697 TATTGTTTATATGAGTACACTTTT
1 TATT-TTTCTATGAGTACACTTTT
11721 TATTTTTCTATGAGTACACTTTTT
1 TATTTTTCTATGAGTACAC-TTTT
*
11745 TTTTTTTCTATGAGTACACTT
1 TATTTTTCTATGAGTACACTT
11766 CTACTTTTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
23 16 0.38
24 26 0.62
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.57
Consensus pattern (23 bp):
TATTTTTCTATGAGTACACTTTT
Found at i:13412 original size:142 final size:143
Alignment explanation
Indices: 12919--13906 Score: 1464
Period size: 142 Copynumber: 6.9 Consensus size: 143
12909 GGTTTAAATT
* *
12919 TTAAATAAATATATAGAACATAGTCAATGATAGGGGGTCATACTTATAAGTTTTAACTCTATTTT
1 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTATTTT
* * *
12984 GAACTGTGTTATGAGAGTTATAATCGTCAAAACCGTTATAAAAAGCGTCAAAACCGCTCGACGGA
66 GAACTGT-TTA--AGAGTTATAAT--TGAAAACCG--CTAAAAAGCGTTAAAACCGCTCGACGGA
*
13049 GTA-ATTTATATAAAAATTG-A
124 GCAGA-TTATATAAAAA-TGAA
* *
13069 TT-AACAAATATATAGAACATAGTTAATGAATGATAGGGGGTCATACTTATAACTTTTGACTCTA
1 TTAAATAAATATATAGAACATAG-T--T-AATGATAGGGGGTCATACTTATAACTTTTAACTCTA
* *
13133 TTTTCAACTGTTTAAGAGTTATAATCGAAAAACCGCTAAAAAGCGTTAAAAACCGCTCGACGGAG
62 TTTTGAACTGTTTAAGAGTTATAATTG-AAAACCGCTAAAAAGCGTT-AAAACCGCTCGACGGAG
13198 CAGATTATATAAAAATGAA
125 CAGATTATATAAAAATGAA
* *
13217 TTGAATAAAT-TATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTAACTCTA-TTT
1 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTATTTT
* *
13280 G-ACTGTTTAAGAGTTATTATTGAAAACCGCTAAAAAGCGTTAAAAACCGCTCGATGGAGCAGAT
66 GAACTGTTTAAGAGTTATAATTGAAAACCGCTAAAAAGCGTT-AAAACCGCTCGACGGAGCAGAT
*
13344 TATACAAAAATGAA
130 TATATAAAAATGAA
*
13358 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAATTTTTAACTCTA-TTT
1 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTATTTT
* *
13422 GAACCGTTTAAGAG-TATAATTG-AAACCGTTAAAAAAGCGTTAAAACCGCTCGACGGAGCAGAT
66 GAACTGTTTAAGAGTTATAATTGAAAACCGCT-AAAAAGCGTTAAAACCGCTCGACGGAGCAGAT
*
13485 TAT-TTAAAATGAA
130 TATATAAAAATGAA
13498 TTAAATAAATATATAGAACATAGTTAATGATTAGGGGGTCATACTTATAACTTTTAACTCTATTT
1 TTAAATAAATATATAGAACATAGTTAATGA-TAGGGGGTCATACTTATAACTTTTAACTCTATTT
*
13563 TGAACCGTTTAAGAGTTATAA-TGAAAACCGCTAAAAAGCGTTAAAACCGCTCGACGGAGCAGAT
65 TGAACTGTTTAAGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGACGGAGCAGAT
13627 TATAT-AAAATGAA
130 TATATAAAAATGAA
* * *
13640 TTGAATAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTAATTCTATTTT
1 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTATTTT
* * *
13705 GAACTGTTTAAGAGTTATTATTGAAAACCGCT-AAAAGCGTTAAAAACGCTCGATGGAGCAGATT
66 GAACTGTTTAAGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGACGGAGCAGATT
*
13769 ATTTAAAAATGAA
131 ATATAAAAATGAA
13782 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTA-TTT
1 TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTATTTT
*
13846 GAACCGTTTAAGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGACGGAGCA
66 GAACTGTTTAAGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGACGGAGCA
13907 ATTTATGTAA
Statistics
Matches: 774, Mismatches: 44, Indels: 48
0.89 0.05 0.06
Matches are distributed among these distances:
140 38 0.05
141 242 0.31
142 281 0.36
143 27 0.03
144 35 0.05
147 13 0.02
148 44 0.06
149 33 0.04
150 14 0.02
152 3 0.00
153 44 0.06
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (143 bp):
TTAAATAAATATATAGAACATAGTTAATGATAGGGGGTCATACTTATAACTTTTAACTCTATTTT
GAACTGTTTAAGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGACGGAGCAGATT
ATATAAAAATGAA
Found at i:14860 original size:143 final size:143
Alignment explanation
Indices: 14205--16365 Score: 2995
Period size: 143 Copynumber: 15.1 Consensus size: 143
14195 CTTGTTTGGA
14205 AGTTATAATCGAAAACCGCTAAAAAGCGTTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATG
1 AGTTATAATCGAAAACCGCTAAAAAGCG-TCAAAACCGCTCGGCGGAGTAATTTATAT-AAAATG
**
14270 AATTAAACAAAATATATAGAACATAAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTAT
64 AATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTAT
14335 TTTGAACCATTTATG
129 TTTGAACCATTTATG
14350 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATA-AAAATGAA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATATAAAATGAA
*
14414 TTAAACAAAATATATAGAACATAGTAAATAATAGGGGGTCATACTTATAACTTTTGACTCTA-TT
66 TTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTT
14478 TGAACCATTTATG
131 TGAACCATTTATG
14491 AGTTATAATCG-AAACCGCTAAAAA-CGTCAAAACCGCTCGGCGGAGTAATTTATA-AAAATGAA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATATAAAATGAA
*
14553 TTAAACAAAATATATAGAACATAGTAAATAATAGGGGGTCATACTTATAACTTTTGACTCTA-TT
66 TTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTT
14617 TGAACCA-TTATG
131 TGAACCATTTATG
14629 AGTTATAATCGAAAACCGCTAAAAA-CGTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATGA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATAT-AAAATGA
* *
14693 ATT-AACAACAAATATATAGAACATAGTAAATAATA-GGGGTCATACTTCTAACTTTTGACTCTA
65 ATTAAAC-A-AAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTA
14756 TTTTG-ACCATTTATG
128 TTTTGAACCATTTATG
*
14771 AGTTATAATTGAAAACCGCTAAAAAGCGTC-AAACACGCTCGGCGGAGTAATTTTTATATAAAAC
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAAC-CGCTCGGCGGAGTAA--TTTATATAAAA-
14835 TGAATT-AACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCT
62 TGAATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCT
*
14899 ATTTTGAACCATATATG
127 ATTTTGAACCATTTATG
* * *
14916 AGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTTATGTAAAAATAA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATAT-AAAATGA
14981 ATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTAT-ACTTTTGACTCTATT
65 ATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATT
15045 TTGAACCATTTATG
130 TTGAACCATTTATG
15059 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA-TTATATAAAAATGA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATAT-AAAATGA
15123 ATTAAACAAAATATATAGAACATAGT-AATGATA-GGGGTCATACTTATAA-TTTTGACTCTATT
65 ATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATT
15185 TTGAACCA-TTATG
130 TTGAACCATTTATG
* *
15198 AGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTTACTGTAAAAATA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTA-TAT-AAAAT-
* * *
15263 AAATTAAACAAAATAT-TAGAACATAGTAAATGATAGGGGTCTTCTTAAACTTATAA-TTTTGAC
63 GAATTAAACAAAATATATAGAACATAGTAAATGATAGGGG--GTC--ATACTTATAACTTTTGAC
15326 TC--TTTTGAACCATTTATG
124 TCTATTTTGAACCATTTATG
15344 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAAGTTATTATATAAAAA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA--T-TTATAT-AAAA
15409 TGAATTAAAC-AAATATATAGAACATAGT-AATGATA-GGGGTCATACTTAATAA-TTTTGACTC
62 TGAATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTT-ATAACTTTTGACTC
15470 TA-TTTGAACCATTTATG
126 TATTTTGAACCATTTATG
*
15487 AGTTATAATCGAAAACCGCTAAAAAAGCGTCAAACCCGCTCCCGGC-G-GTAATTTATATAAAAT
1 AGTTATAATCGAAAACCGCT-AAAAAGCGTCAAAACCGCT--CGGCGGAGTAATTTATATAAAAT
** *
15550 GGAATTAAACAAAATATATAGAACATAAAAAATGATA-GGGGTCATACTTCTTATAATTTTTGAC
63 -GAATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATA---CTTATAACTTTTGAC
15614 TCTATTTTGAACCATTTTATG
124 TCTATTTTGAACCA-TTTATG
*
15635 AGTTATAATC-AAAACCGCTAAAAAGCGTCAGAACCGCTCGGCGGAGTAA-TTATTATAAAATGA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTA-TATAAAATGA
* *
15698 ATTAAACAAAATATATAGAACATA-AAAATAATA-GGGGTCATACTTATAACTTTTTGACTCTAT
65 ATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAAC-TTTTGACTCTAT
*
15761 TTTGAACCATTTAGG
129 TTTGAACCATTTATG
* * **
15776 AGTTATAATTGAAAACCGCTAAAAAGCGTTAAAAACCGCTCGGCGGAGTAATTTATATATAAAAA
1 AGTTATAATCGAAAACCGCTAAAAAGCG-TCAAAACCGCTCGGCGGAGTAATTTATATA-AAATG
* *
15841 AAATAAAC-AAA-ATATAGATA-A-A--AAATGATAGGGGGTCATAC-TATAATTTTTGGACTCT
64 AATTAAACAAAATATATAGA-ACATAGTAAATGATAGGGGGTCATACTTATAACTTTT-GACTCT
*
15899 ATTTTGACCCATTTATG
127 ATTTTGAACCATTTATG
**
15916 AGTTATAATCGAAAACCG-TAAAAAGCGTCCGAACCG-TC-GCGGAGTACATTTATATAAAACTG
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTA-ATTTATATAAAA-TG
* * * * * *
15978 AAATAAACAAAATATATCGAAACATA-AAAACTAATTAGGGGGTCCTACTTATATAATTTTGACT
64 AATTAAACAAAATATATAG-AACATAGTAAA-TGA-TAGGGGGTCATACTTATA-ACTTTTGACT
16042 CTATTTTGAACCATTTATG
125 CTATTTTGAACCATTTATG
* * *
16061 AGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTTTATATAAAA-AA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA-TTTATATAAAATGA
* ** * * *
16125 AATAAACAAAATATATAGAACATAAAAAAGGATTAGGGGGTCCTACTTAT-ATTTTTGACTCTAT
65 ATTAAACAAAATATATAGAACATAGTAAATGA-TAGGGGGTCATACTTATAACTTTTGACTCTAT
16189 TTTGAACCATTTATG
129 TTTGAACCATTTATG
* *
16204 AGTTATAATCGAAAACCGTCT-AAAAGCGTTAAAAACCGCTCGACGGAGTAATTTATATAAAATG
1 AGTTATAATCGAAAACCG-CTAAAAAGCG-TCAAAACCGCTCGGCGGAGTAATTTATATAAAATG
* ** *
16268 AATTAACCAAACAATATATTAGAAC-TAAAAAATAATAGGGGGTCATACTTATAACTTTTGACTC
64 AATTAAAC-AA-AATATA-TAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTC
*
16332 TA-TTTGAACCATTATAAG
126 TATTTTGAACCATT-TATG
16350 AGTTATTAATC-AAAAC
1 AGTTA-TAATCGAAAAC
16366 TAGTATTTGC
Statistics
Matches: 1857, Mismatches: 75, Indels: 167
0.88 0.04 0.08
Matches are distributed among these distances:
136 11 0.01
137 19 0.01
138 25 0.01
139 225 0.12
140 111 0.06
141 148 0.08
142 269 0.14
143 281 0.15
144 210 0.11
145 243 0.13
146 199 0.11
147 69 0.04
148 44 0.02
149 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (143 bp):
AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATATAAAATGAA
TTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTT
TGAACCATTTATG
Found at i:15450 original size:428 final size:425
Alignment explanation
Indices: 14205--16365 Score: 2913
Period size: 428 Copynumber: 5.0 Consensus size: 425
14195 CTTGTTTGGA
14205 AGTTATAATCGAAAACCGCTAAAAAGCGTTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATG
1 AGTTATAATCGAAAACCGCTAAAAAGCG-TCAAAACCGCTCGGCGGAGTAATTTATATAAAAATG
14270 AATTAAACAAAATATATAGAACATAAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTAT
65 AATTAAACAAAATATATAGAACAT-AAAAATGATA-GGGGTCATACTTATAACTTTTGACTCTAT
*
14335 TTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA
128 TTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAA
*
14400 TTTA-TAAAAATGAATTAAACAAAATATATAGAACATAGTAAATAATAGGGGGTCATACTTATAA
193 TTTATTAAAAATGAATTAAACAAAATATATAGAACATAGTAAATGATA-GGGGTCATACTTATAA
*
14464 CTTTTGACTC-TATTTGAACCATTTATGAGTTATAATCG-AAACCGCTAAAAA-CGTCAAAACCG
257 CTTTTGACTCAT-TTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTAAAAACCG
*
14526 CTCGGCGGAGT-A-ATT-TATAAAAATGAATTAAACAAAATATATAGAACATAGTAAATAATAGG
321 CTCGGCGGAGTAATATTATATAAAAATGAATTAAAC-AAATATATAGAACATAGT-AATGATAGG
14588 GGGTCATACTTATAACTTTTGACTCTATTTGAACCA-TTATG
384 GGGTCATACTTATAACTTTTGACTCTATTTGAACCATTTATG
14629 AGTTATAATCGAAAACCGCTAAAAA-CGTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATGA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATGA
* * *
14693 ATT-AACAACAAATATATAGAACATAGTAAATAATAGGGGTCATACTTCTAACTTTTGACTCTAT
66 ATTAAAC-A-AAATATATAGAACATA-AAAATGATAGGGGTCATACTTATAACTTTTGACTCTAT
* *
14757 TTTG-ACCATTTATGAGTTATAATTGAAAACCGCTAAAAAGCG-TCAAACACGCTCGGCGGAGTA
128 TTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAAC-CGCTCGGCGGAGTA
*
14820 ATTTTTATATAAAACTGAATT-AACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTT
192 A--TTTAT-TAAAAATGAATTAAACAAAATATATAGAACATAGTAAATGATA-GGGGTCATACTT
* *
14884 ATAACTTTTGACTCTATTTTGAACCATATATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAA
253 ATAACTTTTGACTC-ATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTAAAA
* *
14949 ACCGCTCGGCGGAGTAAT-TTATGTAAAAATAAATTAAACAAAATATATAGAACATAGTAAATGA
317 ACCGCTCGGCGGAGTAATATTATATAAAAATGAATTAAAC-AAATATATAGAACATAGT-AATGA
15013 TAGGGGGTCATACTTAT-ACTTTTGACTCTATTTTGAACCATTTATG
380 TAGGGGGTCATACTTATAACTTTTGACTCTA-TTTGAACCATTTATG
15059 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA-TTATATAAAAATGA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATGA
**
15123 ATTAAACAAAATATATAGAACATAGTAATGATAGGGGTCATACTTATAA-TTTTGACTCTATTTT
66 ATTAAACAAAATATATAGAACATAAAAATGATAGGGGTCATACTTATAACTTTTGACTCTATTTT
15187 GAACCA-TTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTT
131 GAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTT
* *
15251 ACTGTAAAAATAAAATTAAACAAAATAT-TAGAACATAGTAAATGATAGGGGTCTTCTTAAACTT
196 A-T-TAAAAAT-GAATTAAACAAAATATATAGAACATAGTAAATGATAGGGG---TC--ATACTT
*
15315 ATAA-TTTTGACTC-TTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAA
253 ATAACTTTTGACTCATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTAAAAA
15378 CCGCTCGGCGGAGTAAGTTATTATATAAAAATGAATTAAACAAATATATAGAACATAGTAATGAT
318 CCGCTCGGCGGAGTAA--TATTATATAAAAATGAATTAAACAAATATATAGAACATAGTAATGAT
15443 A-GGGGTCATACTTAATAA-TTTTGACTCTATTTGAACCATTTATG
381 AGGGGGTCATACTT-ATAACTTTTGACTCTATTTGAACCATTTATG
*
15487 AGTTATAATCGAAAACCGCTAAAAAAGCGTCAAACCCGCTCCCGGC-G-GTAATTTATAT-AAAA
1 AGTTATAATCGAAAACCGCT-AAAAAGCGTCAAAACCGCT--CGGCGGAGTAATTTATATAAAAA
*
15549 TGGAATTAAACAAAATATATAGAACATAAAAAATGATAGGGGTCATACTTCTTATAATTTTTGAC
63 T-GAATTAAACAAAATATATAGAACAT-AAAAATGATAGGGGTCATA---CTTATAACTTTTGAC
* *
15614 TCTATTTTGAACCATTTTATGAGTTATAATC-AAAACCGCTAAAAAGCGTCAGAACCGCTCGGCG
123 TCTATTTTGAACCA-TTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCG
* *
15678 GAGTAA-TTATTATAAAATGAATTAAACAAAATATATAGAACATA-AAAATAATAGGGGTCATAC
187 GAGTAATTTATTA-AAAATGAATTAAACAAAATATATAGAACATAGTAAATGATAGGGGTCATAC
* *
15741 TTATAACTTTTTGACTCTATTTTGAACCATTTAGGAGTTATAATTGAAAACCGCTAAAAAGCGTT
251 TTATAAC-TTTTGACTC-ATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCG-T
* * *
15806 AAAAACCGCTCGGCGGAGTAAT-TTATATATAAAA-AAAATAAACAAA-ATATAGATA-A-A-AA
313 AAAAACCGCTCGGCGGAGTAATATTATATA-AAAATGAATTAAACAAATATATAGA-ACATAGTA
* *
15865 ATGATAGGGGGTCATAC-TATAATTTTTGGACTCTATTTTGACCCATTTATG
376 ATGATAGGGGGTCATACTTATAACTTTT-GACTCTA-TTTGAACCATTTATG
** *
15916 AGTTATAATCGAAAACCG-TAAAAAGCGTCCGAACCG-TC-GCGGAGTACATTTATATAAAACTG
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTA-ATTTATATAAAAATG
* * * * *
15978 AAATAAACAAAATATATCGAAACATAAAAACTAATTAGGGGGTCCTACTTATATAATTTTGACTC
65 AATTAAACAAAATATATAG-AACATAAAAA-TGA-TA-GGGGTCATACTTATA-ACTTTTGACTC
*
16043 TATTTTGAACCATTTATGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAG
125 TATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAG
* ** * *
16108 TAATTTTATATAAAAA--AAATAAACAAAATATATAGAACATAAAAAAGGATTAGGGGGTCCTAC
190 TAA-TTTAT-TAAAAATGAATTAAACAAAATATATAGAACATAGTAAATGA-TA-GGGGTCATAC
*
16171 TTAT-ATTTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGTCT-AAAAGCGTT
251 TTATAACTTTTGACTC-ATTTTGAACCATTTATGAGTTATAATCGAAAACCG-CTAAAAAGCG-T
* *
16234 AAAAACCGCTCGACGGAGTAAT-TTATAT-AAAATGAATTAACCAAACAATATATTAGAAC-TAA
313 AAAAACCGCTCGGCGGAGTAATATTATATAAAAATGAATTAA--ACA-AATATA-TAGAACAT-A
** * *
16296 AAAATAATAGGGGGTCATACTTATAACTTTTGACTCTATTTGAACCATTATAAG
373 GTAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTTGAACCATT-TATG
16350 AGTTATTAATC-AAAAC
1 AGTTA-TAATCGAAAAC
16366 TAGTATTTGC
Statistics
Matches: 1578, Mismatches: 70, Indels: 168
0.87 0.04 0.09
Matches are distributed among these distances:
420 4 0.00
421 55 0.03
422 74 0.05
423 30 0.02
424 83 0.05
425 43 0.03
426 86 0.05
427 232 0.15
428 281 0.18
429 194 0.12
430 155 0.10
431 85 0.05
432 46 0.03
433 60 0.04
434 60 0.04
435 38 0.02
436 37 0.02
437 15 0.01
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (425 bp):
AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTATATAAAAATGA
ATTAAACAAAATATATAGAACATAAAAATGATAGGGGTCATACTTATAACTTTTGACTCTATTTT
GAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTT
ATTAAAAATGAATTAAACAAAATATATAGAACATAGTAAATGATAGGGGTCATACTTATAACTTT
TGACTCATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTAAAAACCGCTCGG
CGGAGTAATATTATATAAAAATGAATTAAACAAATATATAGAACATAGTAATGATAGGGGGTCAT
ACTTATAACTTTTGACTCTATTTGAACCATTTATG
Found at i:16051 original size:717 final size:709
Alignment explanation
Indices: 14205--16365 Score: 3006
Period size: 717 Copynumber: 3.0 Consensus size: 709
14195 CTTGTTTGGA
14205 AGTTATAATCGAAAACCGCTAAAAAGCGTTCAAAACCGCTCGGCGGAGTAATT-TATATAAAAAT
1 AGTTATAATCGAAAACCGCTAAAAAGCG-TCAAAACCGCTCGGCGGAGTAATTATATAT-AAAAT
14269 GAATTAAACAAAATATATAGAACATAAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTA
64 GAATTAAACAAAATATATAGAACAT-AAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTA
14334 TTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTA
128 TTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTA
* * *
14399 ATTTATA-AAAATGAATTAAACAAAATATATAGAACATAGTAAATAATAGGGGGTCATACTTATA
193 ATTTATATAAAAAGAATTAAAC-AAA-ATATAGAA-ACA-TAAATGATAGGGGGTCATACTTATA
14463 ACTTTTGACTCTA-TTTGAACCATTTATGAGTTATAATCG-AAACCGCTAAAAA-CGTCAAAACC
254 A-TTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACC
*
14525 GCTCGGCGGAGTAATTTATA-AAAATGAATTAAACAAAATATATAGAACATAGTAAATAATAGGG
318 GCTCGGCGGAGTAATTTATATAAAATGAAATAAACAAAATATATAGAACATAGTAAATAATAGGG
* *
14589 GGTCATACTTATA-ACTTTTGACTCTA-TTTGAACCA-TTATGAGTTATAATCGAAAACCGCTAA
383 GGTCCTACTTATATAATTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAA
14651 AAA-CGTCAAAACCGCTCGGCGGAGTAA-TTTATATAAAAATGAATTAACAACAAATATATAGAA
448 AAAGCGTCAAAACCGCTCGGCGGAGTAATTTTATATAAAAATGAATT-A-AACAAATATATAGAA
* *
14714 CATAGTAAATAATAGGGGTCATACTTCTAACTTTTGACTCTATTTTG-ACCATTTATGAGTTATA
511 CATAGT-AATGATAGGGGTCATACTTATAA-TTTTGACTCTATTTTGAACCATTTATGAGTTATA
* *
14778 ATTGAAAACCGCTAAAAAGCGTCAAACACGCT-CGGCGGAGTAATTTTTATATAAAACTGAATT-
574 ATCGAAAACCGCTAAAAAGCGTCAAACCCGCTCCGGC-G-GTAA--TTTATATAAAA-TGAATTA
**
14841 AACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTTTGA
634 AACAAAATATATAGAACATAAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTTTGA
14906 ACCA-TATATG
699 ACCATTATATG
* * *
14916 AGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGCTCGGCGGAGTAATT-TATGTAAAAATA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTATATAT-AAAATG
*
14980 AATTAAACAAAATATATAGAACATAGTAAATGATAGGGGGTCATACTTAT-ACTTTTGACTCTAT
65 AATTAAACAAAATATATAGAACATA-AAAATGATAGGGGGTCATACTTATAACTTTTGACTCTAT
15044 TTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA
129 TTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA
*
15109 -TTATATAAAAATGAATTAAACAAAATATATAGAACATAGTAATGATA-GGGGTCATACTTATAA
194 TTTATATAAAAA-GAATTAAACAAAATATAGA-AACATA--AATGATAGGGGGTCATACTTATAA
*
15172 TTTTGACTCTATTTTGAACCA-TTATGAGTTATAATCGAAAACCGCTAAAAAGCGTTAAAACCGC
255 TTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGC
* * *
15236 TCGGCGGAGTAATTTACTGTAAAAATAAAATTAAACAAAATAT-TAGAACATAGTAAATGATA-G
320 TCGGCGGAGTAATTTA-TAT-AAAATGAAA-TAAACAAAATATATAGAACATAGTAAATAATAGG
*
15299 GGGT-CTTCTTAAACTTATAATTTTGACTC--TTTTGAACCATTTATGAGTTATAATCGAAAACC
382 GGGTCCTACTT--A--TATAATTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACC
15361 GCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAAGTTATTATATAAAAATGAATTAAACAAATATA
443 GCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAA-TT-TTATATAAAAATGAATTAAACAAATATA
15426 TAGAACATAGTAATGATAGGGGTCATACTTAATAATTTTGACTCTA-TTTGAACCATTTATGAGT
506 TAGAACATAGTAATGATAGGGGTCATACTT-ATAATTTTGACTCTATTTTGAACCATTTATGAGT
15490 TATAATCGAAAACCGCTAAAAAAGCGTCAAACCCGCTCCCGGCGGTAATTTATATAAAATGGAAT
570 TATAATCGAAAACCGCT-AAAAAGCGTCAAACCCGCT-CCGGCGGTAATTTATATAAAAT-GAAT
*
15555 TAAACAAAATATATAGAACATAAAAAATGATA-GGGGTCATACTTCTTATAATTTTTGACTCTAT
632 TAAACAAAATATATAGAACATAAAAAATGATAGGGGGTCATA---CTTATAACTTTTGACTCTAT
*
15619 TTTGAACCATTTTATG
694 TTTGAACCATTATATG
*
15635 AGTTATAATC-AAAACCGCTAAAAAGCGTCAGAACCGCTCGGCGGAGTAATTAT-TATAAAATGA
1 AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTATATATAAAATGA
*
15698 ATTAAACAAAATATATAGAACATAAAAATAATA-GGGGTCATACTTATAACTTTTTGACTCTATT
66 ATTAAACAAAATATATAGAACATAAAAATGATAGGGGGTCATACTTATAAC-TTTTGACTCTATT
* * *
15762 TTGAACCATTTAGGAGTTATAATTGAAAACCGCTAAAAAGCGTTAAAAACCGCTCGGCGGAGTAA
130 TTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCG-TCAAAACCGCTCGGCGGAGTAA
* *
15827 TTTATATATAAAAAAAATAAACAAAATATAGATAA-A-AAATGATAGGGGGTCATAC-TATAATT
194 TTTATATA-AAAAGAATTAAACAAAATATAGA-AACATAAATGATAGGGGGTCATACTTATAA-T
* **
15889 TTTGGACTCTATTTTGACCCATTTATGAGTTATAATCGAAAACCG-TAAAAAGCGTCCGAACCG-
256 TTT-GACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGC
* *
15952 TC-GCGGAGTACATTTATATAAAACTGAAATAAACAAAATATATCGAAACATA-AAAACTAATTA
320 TCGGCGGAGTA-ATTTATATAAAA-TGAAATAAACAAAATATATAG-AACATAGTAAA-TAA-TA
*
16015 GGGGGTCCTACTTATATAATTTTGACTCTATTTTGAACCATTTATGAGTTATAATTGAAAACCGC
380 GGGGGTCCTACTTATATAATTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGC
* *
16080 TAAAAAGCGTTAAAACCGCTCGGCGGAGTAATTTTATATAAAAA--AAATAAACAAAATATATAG
445 TAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTTTATATAAAAATGAATTAAAC-AAATATATAG
** * * *
16143 AACATAAAAAAGGATTAGGGGGTCCTACTTATATTTTTGACTCTATTTTGAACCATTTATGAGTT
509 AACAT-AGTAATGA-TA-GGGGTCATACTTATAATTTTGACTCTATTTTGAACCATTTATGAGTT
* * *
16208 ATAATCGAAAACCGTCT-AAAAGCGTTAAAAACCGCTCGACGG-AGTAATTTATATAAAATGAAT
571 ATAATCGAAAACCG-CTAAAAAGCG-TCAAACCCGCTC--CGGCGGTAATTTATATAAAATGAAT
* *
16271 TAACCAAACAATATATTAGAAC-TAAAAAATAATAGGGGGTCATACTTATAACTTTTGACTCTA-
632 TAAAC-AA-AATATA-TAGAACATAAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTAT
*
16334 TTTGAACCATTATAAG
694 TTTGAACCATTATATG
16350 AGTTATTAATC-AAAAC
1 AGTTA-TAATCGAAAAC
16366 TAGTATTTGC
Statistics
Matches: 1318, Mismatches: 63, Indels: 133
0.87 0.04 0.09
Matches are distributed among these distances:
707 29 0.02
708 51 0.04
709 121 0.09
710 94 0.07
711 33 0.03
712 26 0.02
713 19 0.01
714 43 0.03
715 163 0.12
716 210 0.16
717 299 0.23
718 144 0.11
719 82 0.06
720 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (709 bp):
AGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATTATATATAAAATGA
ATTAAACAAAATATATAGAACATAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTT
TGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCGGAGTAATT
TATATAAAAAGAATTAAACAAAATATAGAAACATAAATGATAGGGGGTCATACTTATAATTTTGA
CTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTCAAAACCGCTCGGCG
GAGTAATTTATATAAAATGAAATAAACAAAATATATAGAACATAGTAAATAATAGGGGGTCCTAC
TTATATAATTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGCTAAAAAGCGTC
AAAACCGCTCGGCGGAGTAATTTTATATAAAAATGAATTAAACAAATATATAGAACATAGTAATG
ATAGGGGTCATACTTATAATTTTGACTCTATTTTGAACCATTTATGAGTTATAATCGAAAACCGC
TAAAAAGCGTCAAACCCGCTCCGGCGGTAATTTATATAAAATGAATTAAACAAAATATATAGAAC
ATAAAAAATGATAGGGGGTCATACTTATAACTTTTGACTCTATTTTGAACCATTATATG
Found at i:17602 original size:269 final size:266
Alignment explanation
Indices: 16465--17858 Score: 2095
Period size: 272 Copynumber: 5.2 Consensus size: 266
16455 TCTTAAAAAC
*
16465 AAATACTATGAGTACACA-TCAGGTAATTTTTCATATATATGGGAGGACTG-GTTACCCCCGACC
1 AAATACTATGAGTAGACATTCAGGTAATTTTTC--ATATAT-GGAGGACTGTG-TA-CCCCGACC
16528 GGG--CATAATTTTCACCCGGAACCGGTGTCGCTGTCCC-GGTAAATGCATGCAAGAGAGGTCGG
61 GGGCACATAATTTTCACCCGGAACC-GTGTCGCTGTCCCGGGTAAATGCATGCAAGAGAGGTCGG
16590 TCTATCTACTGATACGAAGAAAACGTGCGT-TTGC-TGTCTATATAGGCGCAAGAACGTAAAC-A
125 TCTATCTACTGATACGAAGAAAACGTGCGTATTGCGT-TCTATATAGGCGCAAGAACGTAAACAA
* *
16652 AATAATGATATTAGGGTGAGGTCCGAGGCTAGTAATGCGTCTCTACCGCGTGAAGAGAT-CGAGA
189 AAT-A-GATATTAGGGTGA-GTCCGAGGCTTGTAATGCGTCTCTACCGCGTGAAGAGATACAAGA
16716 GAGACCCTTCTTTGGAA
251 GAGACCCTTCTTT-GAA
*
16733 AAATACTATGAGTCGACATTCAGGTAATTTTTCATATATGGAGGACTGTGTACCCCGACCGGGCA
1 AAATACTATGAGTAGACATTCAGGTAATTTTTCATATATGGAGGACTGTGTACCCCGACCGGGCA
*
16798 CATAATTTTCACCCGGAACCGTGTAGCTTGTTGTTGTCCCGGGTAAATGCATGCAAGAGAGGTCG
66 CATAATTTTCACCCGGAACCGTGT--C-----GCTGTCCCGGGTAAATGCATGCAAGAGAGGTCG
16863 GTTTCTATCTACTGATACGAAGAAAACGTGCGTATTGCGTTCTA-ATAGGCGCAAGAACGTAAAA
124 G--TCTATCTACTGATACGAAGAAAACGTGCGTATTGCGTTCTATATAGGCGCAAGAACGT-AAA
*
16927 CAAAATCGATTATTAGGGTGAGTCCGAGGCTTGTTAATGCGTCTCTA-CGCGTGAAGAGATACAA
186 CAAAATAGA-TATTAGGGTGAGTCCGAGGCTTG-TAATGCGTCTCTACCGCGTGAAGAGATACAA
16991 GAGAGACCCTTCTTTGAA
249 GAGAGACCCTTCTTTGAA
17009 AAATACTATGA-TAGACATTCAGGTAATTTTTCATATATATGGAGGACTGTGTACCCCGACCGGG
1 AAATACTATGAGTAGACATTCAGGTAATTTTTC--ATATATGGAGGACTGTGTACCCCGACCGGG
17073 CACATAATTTTTCACCCGGAACCGTGTCGCTG-CCCGGGTAAATGCATGACAAGAGAGGTCGGTC
64 CACATAA-TTTTCACCCGGAACCGTGTCGCTGTCCCGGGTAAATGCATG-CAAGAGAGGTCGGTC
* *
17137 TATCTACTGATACG-AGAAAACGTGCGTATTTGCGTTCTATATCGGCGAAAGAACGTCGTAAACA
127 TATCTACTGATACGAAGAAAACGTGCGTA-TTGCGTTCTATATAGGCGCAAGAA---CGTAAACA
*
17201 AAATAGATATTAGGGGTGAGTCCG-GGCTTATGTAATGCGTCTCTACCGCG-GAAGAGATACGAG
188 AAATAGATATTA-GGGTGAGTCCGAGGC-T-TGTAATGCGTCTCTACCGCGTGAAGAGATACAAG
17264 AGAGACCCTTC-TTGAA
250 AGAGACCCTTCTTTGAA
17280 AAATACTATGAGTAGACATTCAGGTAATTTTTCATATAT-GAGGACTGTGTACCCCCGACCGGGC
1 AAATACTATGAGTAGACATTCAGGTAATTTTTCATATATGGAGGACTGTGTA-CCCCGACCGGGC
*
17344 ACATAATTTTCACCCGGAACCGTGTCGCTTCGTTCCCGGGTAACTGCATGCAAGAGAGGTCGGTC
65 ACATAATTTTCACCCGGAACCGTGTCGC-T-G-TCCCGGGTAAATGCATGCAAGAGAGGTCGGTC
17409 TATCTACTGATACGAAGAAAACGTGCGTATTGCGTTCTATATAGGCGCAAGAACGTAAACAAAAT
127 TATCTACTGATACGAAGAAAACGTGCGTATTGCGTTCTATATAGGCGCAAGAACGTAAACAAAAT
17474 AGATATTAGGGTGAGTCCGAGGCTTGTAATGCGTCTCTACCGCGTG-AGAGATACAAG-GAGACC
192 AGATATTAGGGTGAGTCCGAGGCTTGTAATGCGTCTCTACCGCGTGAAGAGATACAAGAGAGACC
17537 CTTCTTTGAA
257 CTTCTTTGAA
17547 AAATACTATGA-TAGACATTCAGGTAATTTTTCATATATAGGAGGACTGTTGTA-CCCGACCGGG
1 AAATACTATGAGTAGACATTCAGGTAATTTTTCATATAT-GGAGGACTG-TGTACCCCGACCGGG
*
17610 CACATAATTTTCAACCCGGAACCGTGTCGCTGTCCCGGGTAAATGCATGCACGAGAGGTCGGTCT
64 CACATAATTTTC-ACCCGGAACCGTGTCGCTGTCCCGGGTAAATGCATGCAAGAGAGGTCGGTCT
17675 ATCTACTGATACGAAGAAAACGTGCGTATTTGCGTTCTATATAGGCGC-AGAACGTAAA-AAAAT
128 ATCTACTGATACGAAGAAAACGTGCGTA-TTGCGTTCTATATAGGCGCAAGAACGTAAACAAAAT
*
17738 AG-TATTAGGGTGAGTCCGAGGC-TGTAA-GCGTCTCTACCGCGGTGAAGAGATACAAGAGAGGC
192 AGATATTAGGGTGAGTCCGAGGCTTGTAATGCGTCTCTACCGC-GTGAAGAGATACAAGAGAGAC
17800 CCTTCTTTGAA
256 CCTTCTTTGAA
17811 AAATACTATGGAGTAGACATTCAGGTAATTTTTCATATATGGAGGACT
1 AAATACTAT-GAGTAGACATTCAGGTAATTTTTCATATATGGAGGACT
17859 ATGTGACTGG
Statistics
Matches: 1053, Mismatches: 19, Indels: 111
0.89 0.02 0.09
Matches are distributed among these distances:
261 13 0.01
262 8 0.01
263 31 0.03
264 31 0.03
265 90 0.09
266 99 0.09
267 96 0.09
268 69 0.07
269 101 0.10
270 52 0.05
271 41 0.04
272 131 0.12
273 45 0.04
274 25 0.02
275 20 0.02
276 87 0.08
277 90 0.09
278 24 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (266 bp):
AAATACTATGAGTAGACATTCAGGTAATTTTTCATATATGGAGGACTGTGTACCCCGACCGGGCA
CATAATTTTCACCCGGAACCGTGTCGCTGTCCCGGGTAAATGCATGCAAGAGAGGTCGGTCTATC
TACTGATACGAAGAAAACGTGCGTATTGCGTTCTATATAGGCGCAAGAACGTAAACAAAATAGAT
ATTAGGGTGAGTCCGAGGCTTGTAATGCGTCTCTACCGCGTGAAGAGATACAAGAGAGACCCTTC
TTTGAA
Found at i:20747 original size:453 final size:455
Alignment explanation
Indices: 17765--21540 Score: 6529
Period size: 449 Copynumber: 8.4 Consensus size: 455
17755 GAGGCTGTAA
* *
17765 GCGTCTCTACCGCGGTGAAGAGATACAAGAGAGGCCCTTCTTTGAAAAATACTATGGAGTAGACA
1 GCGTCTCTACCGC-GTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTAT-GAGTAGACA
*
17830 TTCAGGTAATTTTTC--ATATATGGAGGACTATG-TGACTGGTCAGTCTTCATGGAG-GT-TATA
64 TTCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATA
17890 TGGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTAC
129 TGGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTAC
*
17955 GGGAACGAA-CTTTCACGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTC
194 GGGAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTC
**
18019 TATGTGTAT-CCCGACCGGGGACTTAATTTTCA-CGGGAACAGTGTGGCTGTCCCGGGTCGTTGC
259 TATGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGC
* * *
18082 ATGCAGAAGAGGTCGGTCTAT-TACTTATGCGAAGAAAACGTCGTGTATTGCTTTCTAT-TAGGG
324 ATGCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGT-GCGTATTGCGTTCTATATAGGG
18145 GCAAGAACGTAAACAAAATAGATATTAGGTTG-GTCCGAGGCTTGTAATAAGGCTTCCACGCGGA
388 GCAAGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGA
18209 AAT
453 AAT
*
18212 GCGTCTCTACCGCAT-AAGAGATTACGAGAGAGGCCCGTCTTTG-AAAATACTATGAGTAGAACA
1 GCGTCTCTACCGCGTGAAGAGA-TACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAG-ACA
18275 TTCAGGTAATTTTTCATATATATGGAGGACTCTG-TGACTGGTCAGTCTTCATGGAGAGTGTATA
64 TTCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATA
*
18339 TGGG-GACTTGGACCGGTGGTTGCTTGGT-TGAGGA-ATTTTAATCTGCGGGGAGACTCCCGTAC
129 TGGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTAC
18401 GGGAACGAACCTTTCAGGCGGAACCAGAGTGG-TGTCCGAGTTAAAGCATGCAAGAGAGACCGGT
194 GGGAACGAACCTTTCAGGCGGAA-CAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGT
* *
18465 CTATGTGTATCCCCGGACCGGGAACTTAATTTTCACCGGGAA-ATTGTGGCTGTCCCGGGTCAAT
258 CTATGTGTATCCCC-GACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAAT
18529 GCATGCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTTCTATAT-G
322 GCATGCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCG-TTCTATATAG
*
18593 GGGCAAGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCG
386 GGGCAAGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCG
18658 GAAAT
451 GAAAT
18663 GCGTCTCTACCGC-TGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGA-TAGACATT
1 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
18726 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAG-GTATATG
66 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
18790 GGAGACTTGGACCGGTGGTTGCTTGG-CTGAGGATA-TTTAAGCTGCGGGG-GACTCCCGTACGG
131 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
18852 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGA-CGGTCTA
196 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
* *
18916 TGTGTATCCCCGACCGGGGACATAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
261 TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
*
18981 GCAGAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTA-TGCGTTCTATAT--GGGCA
326 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
*
19043 AGAACGTAAACAAAATA-ATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCC-GGCGGAAAT
391 AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
*
19106 GCGTCTCTACCGCGTGAAGAGATTCGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
1 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
19171 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
66 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
19236 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
131 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
*
19301 GAACGAACCTTTCAGCCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
196 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
*
19366 TGTGTATCCCCGACC-GGAACTTAATTTTCACC-GGAAC-GTGTGGCTGTCCCGGGTCAATGCAT
261 TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
19428 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
326 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
19493 AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
391 AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
19558 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
1 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
19623 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
66 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
19688 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGG--ATTTTAAGCTGCGGGGAGACT-CCGTACGG
131 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
*
19750 GAACGAACCTTTCAGCCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
196 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
19815 TGTGTATCCCCGACC-GGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
261 TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
*
19879 GCAAAAGAGGTCGGTC--TCTACTTATGCGAAGAAAACGTGGGTATTGCGTTCTATATAGGGGCA
326 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
*
19942 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
391 AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
20007 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
1 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
20072 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
66 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
20137 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
131 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
*
20202 GAACGAACCTTTCAGCCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
196 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
*
20267 TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGTTCAATGCAT
261 TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
*
20332 GC-AAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTACTGCGTTCTATATAGGGGCA
326 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
20396 AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
391 AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
20461 GCGTCTCTAACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACAT
1 GCGTCTCT-ACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACAT
*
20526 TCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGATCAGTCTTCATGGAGAGTGTATAT
65 TCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATAT
20591 GGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGC-GGG-GACTCCCGTACG
130 GGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACG
20654 GGAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCT
195 GGAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCT
20719 ATGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAA-AGTGTGGCTGTCCCGGGTCAATGCA
260 ATGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCA
*
20783 TGCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGGGTATTGCGTTCTAT-TAGGGGC
325 TGCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGC
*
20847 AATGACCGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAA
390 AA-GAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAA
20912 AT
454 AT
*
20914 GCGTCTCTACCGCGTG-AGAGATACGAGAGCGGCCCCGTCTTTGAAAAATACTATGAGTAGACAT
1 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGG-CCCGTCTTTGAAAAATACTATGAGTAGACAT
*
20978 TCA-GTAATTTTTC--ATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGCGTGTATAT
65 TCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATAT
* * * * *
21040 GGGAGAC--GGACCGG-GTGTTGCTTGGTATGAGGATATTTTATAAGC-GGGGAGGATACGTACG
130 GGGAGACTTGGACCGGTG-GTTGCTTGGTCTGAGGATA-TTT-TAAGCTGCGG-GGAGAC-TCCC
* *
21101 GGAAGGGAACGAACCTTTCAGGCGGAACAGAGTGGACTGTCC-AGTTAAAG-ATGCAAGAGAGGA
190 GTACGGGAACGAACCTTTCAGGCGGAACAGAGTGG-CTGTCCGAGTTAAAGCATGCAAGAGA-GA
* * *
21164 CCGGTCTATGTGTATCCCCGAACCGGGGACATCA-TTTCACCTGGAACAGTGTGGCTGTCCCGGG
253 CCGGTCTATGTGTATCCCCG-ACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGG
*
21228 TCAATGCATGCAGAAGAGGTCGGTCTATCTACTTATGCGAAGAAGAAAACGTGCGTATTGCGTTC
317 TCAATGCATGCAAAAGAGGTCGGTCTATCTACTTATGC---GAAGAAAACGTGCGTATTGCGTTC
*
21293 TATATAGGGGCAAGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTT
379 TATATAGGGGCAAGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTT
21358 CCACGCGGAAAT
444 CCACGCGGAAAT
*
21370 GCGTCTCTACCGCGTGAAGAGATTCGAGAGAGGCCCGTC-TTGAAAAATACTATGAGTAGACATT
1 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
21434 CAGGTAATTTTTCATATATATGGAGGACTCTG--GACTGGTCAGTCTTCATGGAGAGTGTATATG
66 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
21497 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGC
131 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGC
21541 AAAAGAGGTC
Statistics
Matches: 3197, Mismatches: 63, Indels: 129
0.94 0.02 0.04
Matches are distributed among these distances:
443 21 0.01
444 83 0.03
445 121 0.04
446 98 0.03
447 242 0.08
448 167 0.05
449 704 0.22
450 229 0.07
451 204 0.06
452 425 0.13
453 358 0.11
454 120 0.04
455 195 0.06
456 161 0.05
457 26 0.01
458 42 0.01
459 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (455 bp):
GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
AGAACGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
Found at i:22232 original size:753 final size:752
Alignment explanation
Indices: 20784--22293 Score: 2625
Period size: 753 Copynumber: 2.0 Consensus size: 752
20774 GTCAATGCAT
*
20784 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGGGTATTGCGTTCTATTAGGGGCAA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATTAGGGGCAA
* *
20849 TGACCGTAAACAAAATAGATATTAGGTTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 TGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
*
20914 GCGTCTCTACCGCGTGAGAGATACGAGAGCGGCCCCGTCTTTGAAAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAGAGATACGAGAGAGGCCCCGTCTTTGAAAAATACTATGAGTAGACATT
*
20979 CAGTAATTTTTCATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGCGTGTATATGGGA
196 CAGTAATTTTTCATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATGGGA
* * *
21044 GACGGACCGGGTGTTGCTTGGTATGAGGATATTTTATAAGCGGGGAGGATACGTACGGGAAGGGA
261 GACGGACCGGGTGTTGCTTGGTATGAGGATATTTTAT-AGCGCGGAGGAGACGTACCGGAAGGGA
21109 ACGAACCTTTCAGGCGGAACAGAGTGGACTGTCCAGTTAAAGATGCAAGAGAGGACCGGTCTATG
325 ACGAACCTTTCAGGCGGAACAGAGTGGACTGTCCAGTTAAAGATGCAAGAGAGGACCGGTCTATG
*
21174 TGTATCCCCGAACCGGGGACATCATTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCATGC
390 TGTATCCCCGAACCGGGGACATAATTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCATGC
*
21239 AGAAGAGGTCGGTCTATCTACTTATGCGAAGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGC
455 AAAAGAGGTCGGTCTATCTACTTATGC--AGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGC
21304 AAGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAA
518 AAGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAA
*
21369 TGCGTCTCTACCGCGTGAAGAGATTCGAGAGAGGCCCGTCTTGAAAAATACTATGAGTAGACATT
583 TGCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTGAAAAATACTATGAGTAGACATT
21434 CAGGTAATTTTTCATATATATGGAGGACTCTGGACTGGTCAGTCTTCATGGAGAGTGTATATGGG
648 CAGGTAATTTTTCATATATATGGAGGACTCTGGACTGGTCAGTCTTCATGGAGAGTGTATATGGG
21499 AGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAA
713 AGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAA
21539 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAG-AAACGTGCGTATTGCGTTCTATATAGGGGCA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTAT-TAGGGGCA
21603 A-GAACGTAAAC-AAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAA
65 ATGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAA
21666 TGCGTCTCTACCGCGTGAAGAGATACGAGAGAGG-CCCGTCTTTG-AAAATACTATGAGTAGACA
130 TGCGTCTCTACCGCGTG-AGAGATACGAGAGAGGCCCCGTCTTTGAAAAATACTATGAGTAGACA
21729 TTCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATA
194 TTCA-GTAATTTTTC--ATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATA
* *
21794 TGGGAGACTTGGACC-GGTGGTTGCTTGGTCTGAGGATATTTTAT-GCTGCGG-GGAGAC-TCCC
256 TGGGAGAC--GGACCGGGT-GTTGCTTGGTATGAGGATATTTTATAGC-GCGGAGGAGACGTACC
* *
21855 GTACGGGAACGAACCTTTCAGGCGGAACAGAGTGG-CTGTCCGAGTTAAAGCATGCAAGAGA-GA
317 GGAAGGGAACGAACCTTTCAGGCGGAACAGAGTGGACTGTCC-AGTTAAAG-ATGCAAGAGAGGA
21918 CCGGTCTATGTGTATCCCCG-A-CGGGGACATAATTTTCACCTGGAACAGTGTGGCTGTCCCGGG
380 CCGGTCTATGTGTATCCCCGAACCGGGGACATAA-TTTCACCTGGAACAGTGTGGCTGTCCCGGG
21981 TCAATGCATGCAAAAGAGGTCGGTCTATCTACTTATGC-GAAGAAAACGTGCGTATTGCGTTCTA
444 TCAATGCATGCAAAAGAGGTCGGTCTATCTACTTATGCAGAAGAAAACGTGCGTATTGCGTTCTA
22045 TATAGGGGCAAGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCC
509 TATAGGGGCAAGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCC
22110 ACGCGGAAATGCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATG
574 ACGCGGAAATGCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTC-TTGAAAAATACTATG
22175 AGTAGACATTCAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAG
638 AGTAGACATTCAGGTAATTTTTCATATATATGGAGGACTCTG--GACTGGTCAGTCTTCATGGAG
22240 AGTGTATATGGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAA
701 AGTGTATATGGGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAA
22292 GC
1 GC
22294 TGCGGGGAGA
Statistics
Matches: 725, Mismatches: 15, Indels: 32
0.94 0.02 0.04
Matches are distributed among these distances:
750 139 0.19
751 57 0.08
752 33 0.05
753 237 0.33
754 110 0.15
755 114 0.16
756 6 0.01
757 29 0.04
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (752 bp):
GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATTAGGGGCAA
TGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
GCGTCTCTACCGCGTGAGAGATACGAGAGAGGCCCCGTCTTTGAAAAATACTATGAGTAGACATT
CAGTAATTTTTCATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATGGGA
GACGGACCGGGTGTTGCTTGGTATGAGGATATTTTATAGCGCGGAGGAGACGTACCGGAAGGGAA
CGAACCTTTCAGGCGGAACAGAGTGGACTGTCCAGTTAAAGATGCAAGAGAGGACCGGTCTATGT
GTATCCCCGAACCGGGGACATAATTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCATGCA
AAAGAGGTCGGTCTATCTACTTATGCAGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCAAG
AACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAATGC
GTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTGAAAAATACTATGAGTAGACATTCAG
GTAATTTTTCATATATATGGAGGACTCTGGACTGGTCAGTCTTCATGGAGAGTGTATATGGGAGA
CTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAA
Found at i:23353 original size:455 final size:455
Alignment explanation
Indices: 21539--24129 Score: 4971
Period size: 454 Copynumber: 5.7 Consensus size: 455
21529 GATATTTTAA
21539 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAG-AAACGTGCGTATTGCGTTCTATATAGGGGCA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
21603 AGAACGTAAAC-AAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
21667 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTG-AAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
21731 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
196 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
*
21796 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTATGCTGCGGGGAGACTCCCGTACGG
261 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
21861 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
326 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
*
21926 TGTGTATCCCCGA-CGGGGACATAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
391 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
21990 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
22055 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
22120 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
22185 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
196 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
22250 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
261 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
22315 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
326 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
* *
22380 TGTGTATCCCCGACCGGGGACTTAATTTTCACCGGGAACAGTGTTGCTGTCCCGGGTCAATGCAT
391 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
22445 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
22510 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
22575 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTG-AAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
22639 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATAT-
196 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
*
22703 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCAGGGAGACTCCCGTACGG
261 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
22768 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
326 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
22833 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
391 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
*
22898 GCAGAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
*
22963 AGAACGTAAACAAAATAGATATTAGGGTTAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
23028 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
23093 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
196 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
*
23158 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTATGCTGCGGGGAGACTCCCGTACGG
261 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
23223 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
326 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
*
23288 TGTGTATCCCCGACCGGGGACATAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
391 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
*
23353 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGTA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
*
23418 AGAACGTAAACAAAATAGATATTAGGGTTAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
23483 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
23548 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
196 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
** *
23613 GGAGACTTGGACCGGTGGTTGCTTGGTCACAGGATATTTTATGCTGCGGGGAGACTCCCGTACGG
261 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
*
23678 GAACGAAACTTTCAGGCGGAACAGAGTGGCTGTCCGAG-TAAAGCATGCAAGAGAGACCGGTCTA
326 GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
23742 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
391 TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
23807 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
1 GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
*
23872 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCCAGGCTTGTAATAAGGCTTCCACGCGGAAAT
66 AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
*
23937 GCGTCTCTTCCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
131 GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
24002 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
196 CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
*
24067 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATTTTTTAAGCTGCGGGGAGACTCCCGTAC
261 GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTAC
24130 TTATTTGCCG
Statistics
Matches: 2108, Mismatches: 26, Indels: 9
0.98 0.01 0.00
Matches are distributed among these distances:
451 33 0.02
452 42 0.02
453 459 0.22
454 803 0.38
455 771 0.37
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (455 bp):
GCAAAAGAGGTCGGTCTATCTACTTATGCGAAGAAAACGTGCGTATTGCGTTCTATATAGGGGCA
AGAACGTAAACAAAATAGATATTAGGGTGAGTCCGAGGCTTGTAATAAGGCTTCCACGCGGAAAT
GCGTCTCTACCGCGTGAAGAGATACGAGAGAGGCCCGTCTTTGAAAAATACTATGAGTAGACATT
CAGGTAATTTTTCATATATATGGAGGACTCTGTTGACTGGTCAGTCTTCATGGAGAGTGTATATG
GGAGACTTGGACCGGTGGTTGCTTGGTCTGAGGATATTTTAAGCTGCGGGGAGACTCCCGTACGG
GAACGAACCTTTCAGGCGGAACAGAGTGGCTGTCCGAGTTAAAGCATGCAAGAGAGACCGGTCTA
TGTGTATCCCCGACCGGGGACTTAATTTTCACCTGGAACAGTGTGGCTGTCCCGGGTCAATGCAT
Found at i:24421 original size:174 final size:175
Alignment explanation
Indices: 24130--24466 Score: 649
Period size: 174 Copynumber: 1.9 Consensus size: 175
24120 ACTCCCGTAC
*
24130 TTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCTGTTGTAGATAACCCGCTAATGCGT
1 TTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCCGTTGTAGATAACCCGCTAATGCGT
*
24195 TAACATAATATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTAATTTTTCTTAT
66 TAACATAACATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTAATTTTTCTTAT
24260 ATATGGAGTGTTGTGTTGGCTCGTCAACCTCCTCGCATTGAAGGT
131 ATATGGAGTGTTGTGTTGGCTCGTCAACCTCCTCGCATTGAAGGT
24305 TTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCCGTTGTAGATAA-CCGCTAATGCGT
1 TTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCCGTTGTAGATAACCCGCTAATGCGT
24369 TAACATAACATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTAATTTTTCTTAT
66 TAACATAACATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTAATTTTTCTTAT
24434 ATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
131 ATATGGAGTGTTGTGTTGGCTCGTCAACCTCCT
Statistics
Matches: 160, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
174 109 0.68
175 51 0.32
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (175 bp):
TTATTTGCCGTGTAGATGGTCTTGCCCCAGTCCGTCTATCCGTTGTAGATAACCCGCTAATGCGT
TAACATAACATCAGAGGTCGGTGTTTGAAAATGCTATGAGTACACATTCAGGTAATTTTTCTTAT
ATATGGAGTGTTGTGTTGGCTCGTCAACCTCCTCGCATTGAAGGT
Done.