Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2261
Parameters: 2 7 7 80 10 50 1000
Length:  63841

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--84
22
2.2
22
85
3
64
66
4
0
30
1.10
35--84
23
2.2
22
85
3
64
66
4
0
30
1.10
4200--4262
2
31.5
2
100
0
126
50
0
0
49
1.00
6496--6825
164
2.0
164
98
0
633
38
9
23
29
1.86
7723--7780
20
2.9
21
89
5
93
44
10
13
31
1.78
7675--7830
71
2.2
71
88
2
224
45
10
14
29
1.78
7743--7841
51
1.9
51
89
0
153
48
11
14
26
1.76
10416--10461
11
4.2
11
82
0
56
34
0
2
63
1.07
10416--10524
22
4.9
22
67
14
62
39
2
2
55
1.29
17077--17110
2
17.5
2
93
6
61
50
0
0
50
1.00
19526--19565
3
13.3
3
94
0
71
65
2
0
32
1.06
20897--20927
2
16.0
2
93
6
55
48
0
0
51
1.00
21706--21735
3
10.0
3
100
0
60
33
0
0
66
0.92
23399--23442
21
2.2
20
88
12
63
47
0
0
52
1.00
24982--25034
25
2.1
25
100
0
106
49
9
11
30
1.70
25206--25242
2
18.5
2
100
0
74
51
0
0
48
1.00
25850--25889
2
20.0
2
100
0
80
50
0
0
50
1.00
26043--26076
15
2.2
16
89
5
52
41
0
23
35
1.55
26111--26151
3
13.7
3
100
0
82
65
0
0
34
0.93
29162--29204
16
2.5
18
77
7
54
55
4
0
39
1.20
30213--30253
3
13.7
3
100
0
82
34
0
0
65
0.93
31981--32012
8
3.9
8
92
8
55
87
0
0
12
0.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31981--32012
17
1.9
16
93
6
55
87
0
0
12
0.54
33172--33202
8
3.9
8
95
0
53
58
0
0
41
0.98
33806--33840
1
35.0
1
100
0
70
100
0
0
0
0.00
35448--35503
3
19.0
3
96
3
105
67
0
0
32
0.91
36075--36113
2
19.5
2
94
0
69
48
0
2
48
1.15
36366--36403
2
19.5
2
83
5
51
52
0
5
42
1.24
44007--44036
2
15.0
2
92
0
51
50
3
0
46
1.18
44259--44308
3
16.7
3
95
0
91
34
2
0
64
1.05
46650--46676
2
13.5
2
100
0
54
48
0
0
51
1.00
47193--47246
18
2.9
18
86
8
65
44
0
0
55
0.99
47391--47417
2
13.5
2
100
0
54
51
0
0
48
1.00
47986--48043
24
2.4
24
85
5
73
63
0
0
36
0.94
47977--48094
63
1.9
63
84
8
163
58
0
0
40
1.04
49286--49470
34
5.5
34
86
3
248
40
25
7
26
1.82
53884--54066
34
5.4
34
86
0
242
40
25
7
27
1.81
54804--54829
13
2.0
13
100
0
52
53
0
0
46
1.00
55038--55088
21
2.4
22
76
6
59
54
5
3
35
1.43
56248--56327
22
3.5
22
75
16
65
51
0
0
48
1.00
56237--56344
48
2.3
46
78
12
112
53
0
0
46
1.00
56748--57038
147
2.0
147
92
2
487
38
7
4
49
1.50
57078--57103
3
8.7
3
100
0
52
34
0
0
65
0.93
58305--58339
2
17.5
2
93
0
61
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58552--58595
3
14.7
3
100
0
88
68
0
0
31
0.90
58591--58616
4
6.5
4
100
0
52
76
0
0
23
0.78
59162--59344
34
5.4
34
81
7
187
25
7
26
40
1.82
59178--59344
67
2.5
68
91
1
255
24
8
26
40
1.84
59162--59343
101
1.8
100
86
5
269
25
7
26
40
1.82

Tables:   1

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