Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2266
Parameters: 2 7 7 80 10 50 1000
Length:  57398

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5104--5129
2
13.0
2
100
0
52
50
0
50
0
1.00
5225--5278
17
3.1
17
76
15
56
44
0
3
51
1.19
5560--5614
14
3.4
16
74
20
60
54
1
1
41
1.21
6112--6155
17
2.5
18
78
14
56
59
4
4
31
1.38
6296--6322
2
13.5
2
100
0
54
51
0
0
48
1.00
7344--7416
25
3.0
25
80
13
80
61
0
0
38
0.96
9150--9196
21
2.2
21
88
11
78
40
0
0
59
0.97
9149--9191
11
3.9
11
84
9
61
39
0
0
60
0.97
9587--9611
12
2.1
12
100
0
50
52
40
0
8
1.31
10144--10210
27
2.4
27
80
2
62
52
0
0
47
1.00
10346--10457
34
3.3
34
84
2
136
29
5
22
42
1.75
14906--15056
34
4.4
34
89
0
212
22
7
27
43
1.79
16657--16707
17
3.0
17
72
16
52
56
0
0
43
0.99
17557--17584
3
9.3
3
100
0
56
35
0
0
64
0.94
20559--20609
24
2.2
22
86
6
66
60
0
1
37
1.08
20884--20925
13
3.3
13
81
15
52
40
0
0
59
0.97
22214--22312
29
3.3
29
74
12
92
39
0
0
60
0.97
22225--22273
16
3.1
15
77
8
53
32
0
0
67
0.91
22221--22290
15
4.7
15
72
17
58
38
0
0
61
0.96
22269--22313
16
3.0
16
78
12
51
37
0
0
62
0.96
23521--23570
25
1.9
25
84
8
64
30
12
6
52
1.62
25158--25186
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25211--25245
17
2.1
17
100
0
70
45
22
0
31
1.53
27032--27074
22
2.0
22
100
0
86
30
9
13
46
1.75
28133--28165
17
2.0
17
88
5
50
42
0
6
51
1.26
29759--29799
20
2.0
21
95
4
75
41
0
0
58
0.98
30780--30816
19
2.0
18
89
5
56
35
2
0
62
1.10
31072--31112
11
3.9
11
84
9
50
60
0
0
39
0.96
31228--31259
16
2.0
16
93
0
55
46
0
0
53
1.00
31404--31458
27
2.1
26
86
3
74
0
20
1
78
0.85
32518--32623
35
2.8
38
82
16
114
59
0
0
39
1.04
32605--32666
28
2.3
27
86
5
88
61
0
0
38
0.96
34408--34434
11
2.5
11
100
0
54
48
18
7
25
1.74
35263--35289
2
13.5
2
100
0
54
48
0
0
51
1.00
37685--37727
18
2.3
19
84
4
52
65
0
4
30
1.13
40329--40370
13
3.3
13
81
15
52
50
2
0
47
1.14
41374--41409
16
2.2
17
95
5
65
61
0
0
38
0.96
46388--46443
18
3.0
18
79
10
60
64
0
1
33
1.04
47937--47985
22
2.2
22
85
0
62
34
10
12
42
1.76
47991--48039
22
2.2
22
77
0
53
40
2
10
46
1.49
48150--48216
22
3.0
22
76
4
64
31
2
5
59
1.36
48609--48656
22
2.2
22
85
7
62
37
18
4
39
1.70
48976--49030
22
2.5
22
87
0
74
38
3
9
49
1.52
49000--49047
22
2.2
22
81
7
53
33
10
12
43
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49186--49236
22
2.3
22
82
0
66
33
5
13
47
1.67
49198--49242
22
2.0
22
86
0
63
35
8
11
44
1.71
51497--51544
24
2.0
24
100
0
96
25
12
20
41
1.87
54978--55021
22
2.0
22
86
0
61
40
15
9
34
1.79
56704--56761
30
1.9
30
86
6
82
65
0
1
32
1.03
56906--56957
24
2.3
22
86
6
68
69
0
0
30
0.89

Tables:   1

The End!