genome.fa.s2272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2272
Parameters: 2 7 7 80 10 50 1000
Length:  48182

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3326	474	7.1	473	81	6	3602	36	14	17	30	1.90
306--1914	159	10.2	159	65	14	550	36	13	18	30	1.90
3610--3683	20	3.8	19	85	7	87	29	14	16	39	1.88
11706--11749	21	2.0	23	86	8	65	34	4	20	40	1.73
12327--12376	20	2.6	19	90	3	73	32	16	18	34	1.92
13212--14744	474	3.2	473	86	3	1978	37	13	18	30	1.90
13212--14696	158	9.4	156	66	13	450	36	13	18	30	1.90
14776--17273	944	2.6	941	85	4	3172	36	14	17	31	1.90
14776--17287	474	5.3	472	83	4	2952	36	14	17	31	1.90
18006--18058	20	2.7	20	91	5	81	32	18	13	35	1.90
18088--18141	19	2.8	20	80	5	65	37	18	14	29	1.91
18717--18775	20	3.1	19	70	15	59	37	22	3	37	1.71
20806--20847	19	2.2	19	87	8	59	50	19	2	28	1.60
26833--26885	20	2.7	20	91	5	81	32	18	13	35	1.90
26916--26967	19	2.7	20	90	3	79	36	17	15	30	1.91
28323--28381	32	1.9	30	83	13	75	59	10	10	20	1.58
28662--28719	13	4.0	13	76	23	62	29	15	15	39	1.88
28675--28737	19	3.6	19	76	24	84	28	15	15	39	1.89
28658--28737	32	2.5	32	100	0	160	27	15	16	41	1.88
30803--30845	20	2.1	20	83	12	52	9	30	41	18	1.82
33738--33782	21	2.1	21	84	8	56	22	20	4	53	1.63
35663--35721	32	1.9	30	83	13	75	59	10	10	20	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35908--35946	20	1.9	21	89	5	62	33	10	10	46	1.72
36391--37362	474	2.1	473	86	3	1328	36	14	18	31	1.90
37365--39444	474	4.4	471	81	5	2178	37	13	18	31	1.89
37368--39444	948	2.2	940	83	3	2526	37	13	18	31	1.89
39446--42686	951	3.4	947	83	5	3939	36	13	18	30	1.90
40876--42496	159	10.2	160	68	11	562	36	14	18	30	1.90
40478--42561	159	13.1	156	66	14	468	36	14	18	30	1.91
40469--42704	477	4.7	476	84	3	2668	36	14	18	30	1.91
43529--43567	20	1.9	21	94	5	71	33	17	12	35	1.88
43548--43573	13	2.0	13	100	0	52	38	15	15	30	1.88
45547--45574	13	2.2	13	100	0	56	42	14	14	28	1.84
45529--45593	33	2.0	32	87	3	94	43	12	15	29	1.83
48119--48159	13	3.2	13	85	0	55	36	12	17	34	1.87

Tables:   1

The End!