Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2273
Parameters: 2 7 7 80 10 50 1000
Length:  65352

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1770--1804
18
1.9
18
100
0
70
34
8
0
57
1.29
2279--2317
18
2.2
18
86
9
53
46
0
2
51
1.14
2091--3977
948
2.0
952
85
5
2567
41
11
13
33
1.81
7977--8006
12
2.6
12
94
5
53
0
50
6
43
1.28
10964--11146
40
4.6
41
67
20
111
44
0
0
55
0.99
10964--11020
21
2.8
21
78
7
64
47
0
0
52
1.00
11078--11148
6
12.2
6
71
16
51
38
0
0
61
0.96
10977--11147
11
15.1
11
69
15
82
42
0
0
57
0.98
11010--11147
29
5.0
29
69
21
100
42
0
0
57
0.98
11372--11418
23
2.0
23
87
0
67
0
51
8
40
1.33
13529--13791
24
10.8
24
80
11
295
30
30
26
12
1.92
13532--13791
72
3.6
73
85
8
327
30
30
26
11
1.92
13529--13791
51
5.4
50
82
11
316
30
30
26
12
1.92
14358--14393
2
18.0
2
100
0
72
50
0
0
50
1.00
18126--18189
25
2.6
22
73
20
56
54
0
0
45
0.99
18131--18174
22
2.2
19
88
12
61
56
0
0
43
0.99
18133--18188
21
2.5
22
80
5
69
53
0
0
46
1.00
18795--18831
18
2.0
20
89
10
60
40
2
2
54
1.29
18800--18840
18
2.3
18
82
0
55
41
2
2
53
1.27
18968--19008
14
2.9
15
78
10
50
48
0
0
51
1.00
18998--19041
15
3.0
14
80
9
52
59
4
0
36
1.18
18982--19101
61
2.0
60
82
11
147
57
1
0
40
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19062--19103
17
2.5
17
80
7
50
64
0
0
35
0.94
19297--19343
20
2.4
19
86
10
60
21
6
0
72
1.07
19353--19391
10
3.7
10
80
12
51
43
25
0
30
1.55
27330--27375
18
2.7
18
86
6
69
56
0
0
43
0.99
40218--40246
2
14.5
2
100
0
58
48
0
0
51
1.00
42798--42848
6
8.3
6
80
4
57
21
1
0
76
0.88
43931--43972
3
14.0
3
100
0
84
66
0
0
33
0.92
44010--44061
14
3.6
14
75
15
52
30
1
0
67
1.02
44011--44070
15
4.1
15
77
14
54
33
1
1
63
1.14
44102--44156
27
2.0
29
86
13
80
45
5
1
47
1.36
45149--45180
2
16.0
2
100
0
64
50
0
0
50
1.00
46768--46806
20
2.0
20
100
0
78
20
41
5
33
1.74
51222--51282
28
2.2
28
94
5
106
18
4
21
55
1.60
51392--51448
20
2.8
20
89
0
87
15
43
5
35
1.70
54091--54152
18
3.3
18
80
10
72
64
3
3
29
1.25
54091--54160
19
3.6
19
79
12
81
64
4
2
28
1.27
63640--63715
13
6.1
13
74
22
56
65
2
3
27
1.23
63639--63714
38
2.0
39
86
2
109
64
2
5
27
1.28

Tables:   1

The End!