Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2278
Parameters: 2 7 7 80 10 50 1000
Length:  29444

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4287--4356
15
4.5
15
74
11
61
42
0
1
55
1.08
4289--4325
17
2.1
19
85
10
51
40
0
2
56
1.13
4308--4356
13
3.5
13
79
17
53
46
0
0
53
1.00
4321--4355
16
2.2
16
90
10
54
48
0
0
51
1.00
4762--5062
147
2.1
146
95
0
539
44
4
4
46
1.44
7806--8064
132
2.0
132
94
0
455
29
23
22
24
1.99
8187--8269
42
2.0
42
100
0
166
38
25
16
19
1.92
10705--10747
18
2.4
18
85
11
54
27
9
4
58
1.49
11023--11095
11
7.0
11
74
12
57
31
1
4
63
1.22
11168--11214
19
2.6
18
83
6
51
61
0
0
38
0.96
11593--11635
20
2.1
21
82
4
52
32
2
0
65
1.06
12247--12334
32
2.8
32
87
3
124
50
5
2
42
1.38
12283--12334
16
3.2
16
73
10
52
51
1
1
44
1.23
13571--13609
20
2.0
20
89
0
60
76
2
5
15
1.06
17270--17309
2
20.0
2
100
0
80
50
0
0
50
1.00
18014--18057
23
2.0
23
90
4
72
29
25
4
40
1.75
19402--19444
2
21.5
2
95
0
77
48
48
2
0
1.14
22304--22329
4
6.5
4
100
0
52
50
23
0
26
1.50
23084--23204
63
1.9
62
88
5
181
39
9
9
40
1.72
24741--24771
14
2.1
15
94
5
55
45
0
0
54
0.99

Tables:   1

The End!