Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2279
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21066
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Found at i:847 original size:158 final size:154
Alignment explanation
Indices: 205--4158 Score: 559
Period size: 159 Copynumber: 24.9 Consensus size: 154
195 GAGGAATGCA
* * * *
205 TTTATAGTGGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
1 TTTATGGT-GCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAA
* *
270 GGCACGAAATTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACC-AAGCATCA
63 GGGACGAACTTAGACTTTACAAAAA-TGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
*
334 ATATATTGTATCCTTATGAGAAGACA-AAG
127 ATATATTGTATCCTAATGA-AAGA-ATAAG
*** * * * * *
363 TTTATGGTGCCTAATCGTGAAAGAATG-GGGATTGCATGAC-A-ATTCATGTTTGTCTTACTTAA
1 TTTATGGTGCCTAATCACAAAAGAATGAAGG--T-CATTACTAGAATCATGTTTGTCTCATTTAA
** * * * * * * ** * ** ***
425 GGGATAAACTT-TACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCCCCAAAGCAT
63 GGGACGAACTTAGAC-TTTA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAAACCAAAGCAT
* **
489 CAATGTCGTGTATCCTAATGAAAGGAATAAG
125 CAATATATTGTATCCTAATGAAA-GAATAAG
* * ** * * * *
520 CTTT-TGCTTCCTAATGTTCAAAA-AAGTGGA-GACTATTA-TAAGAATTGATGCTTGTCAT-AT
1 -TTTATGGTGCCTAAT-CACAAAAGAA-TGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
* * * * * * **
580 TTAAGGGAAGAATTTTGA-TATTA-AGGAAAATAGT-GCAAAGAAGAG-ATTTC-AACAGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAGAAG-GCCTTTCTTAC-GAAACC
* **
640 AAA-CAATCAATATCGTT-TATCCTAATGAAGAGAATGCG
118 AAAGC-ATCAATAT-ATTGTATCCTAATGAA-AGAATAAG
* * *
678 TTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
*
743 GCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
64 GGACGAACTTAGACTTTACAAAAA-TGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
*
808 TATATTGTATCCTTATGAGAAGACA-AAG
128 TATATTGTATCCTAATGA-AAGA-ATAAG
** * * * *
836 TTTATGGTGCCTAATCGTGAAAAGAATG--GG-GATTAGCATGACAATTCATGTTTGTCTTACTT
1 TTTATGGTGCCTAATC-ACAAAAGAATGAAGGTCATTA-C-T-AGAA-TCATGTTTGTCTCATTT
** * * * * * * ** * ** ***
898 AAGGGATAAACTT-TACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCCCCAAAGC
61 AAGGGACGAACTTAGAC-TTTA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAAACCAAAGC
* **
962 ATCAATGTCGTGTATCCTAATGAAAGGAATAAG
123 ATCAATATATTGTATCCTAATGAAA-GAATAAG
* * ** * * * * *
995 CTTT-TGCTTCCTAATGTTCAAAA-AAGTGGA-GACTTTTA-TAAGAATTGATGCTTGTCAT-AT
1 -TTTATGGTGCCTAAT-CACAAAAGAA-TGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
* * * * * * * **
1055 TTAAGGGAAGAATTTTGA-TATTA-AGGAAAATAGT-GCAAAGAAAAG-ATTTC-AACAGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAACC
* * **
1115 AAAACAATCAATATCGTT-TATCCTAATGAAGAGAATGCG
118 AAAGC-ATCAATAT-ATTGTATCCTAATGAA-AGAATAAG
* * *
1154 TTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
*
1219 GCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
64 GGACGAACTTAGACTTTACAAAAA-TGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
*
1284 TATATTGTATCCTTATGAGAAGACA-AAG
128 TATATTGTATCCTAATGA-AAGA-ATAAG
** * * * *
1312 TTTATGGTGCCTAATCGTGAAAAGAATG--GG-GATTAGCATGACAATTCATGTTTGTCTTACTT
1 TTTATGGTGCCTAATC-ACAAAAGAATGAAGGTCATTA-C-T-AGAA-TCATGTTTGTCTCATTT
** * * * * * * ** * ** ***
1374 AAGGGATAAACTT-TACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCCCCAAAGC
61 AAGGGACGAACTTAGAC-TTTA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAAACCAAAGC
** * *
1438 ATCAATGCCA-TGTATCCTAACGAAAGGAATATG
123 ATCAAT-ATATTGTATCCTAATGAAA-GAATAAG
* * * * * * * *
1471 CTTT-TGCTTCCTAATCTCGAAGAA-AATGGA-GACTTTTA-TGAGAATTGATGCTTGTCGT-AT
1 -TTTATGGTGCCTAATCAC-AA-AAGAATGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
* * * ** * * * **
1531 TTAAGGGAAGAATTTTGA-TATTA-AGGAAAACAGT-GCAAAGAAAAG-ATTTC-AACAGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAACC
* * * *
1591 AAAACAATTAATATCGTT-TATCCTAATGAAGAGAATGCA-
118 AAAGC-ATCAATAT-ATTGTATCCTAATGAA-AGAAT-AAG
* * * *
1630 TTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
* ** * *
1695 GCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCATTAA
64 GGACGAACTTAGACTTTAC-AAAAATGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
* *
1760 TATAGTGTATCCTTATGAGAAGACA-AAG
128 TATATTGTATCCTAATGA-AAGA-ATAAG
* * * * *
1788 TTTATGGTGCCTAATCATGAAAAGAATG--GG-GATTAGCATGACAATTCTTGTTTGTCTTATTT
1 TTTATGGTGCCTAATCA-CAAAAGAATGAAGGTCATTA-C-T-AGAA-TCATGTTTGTCTCATTT
* * * * * * ** * *
1850 AAGAGACAAACTT-TATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGC-AACACCAAAG
61 AAGGGACGAACTTAGACTT-TA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAA-ACCAAAG
** * *
1913 CATCAATGCCA-TGTATCCTAACGAAAGGAATATG
122 CATCAAT-ATATTGTATCCTAATGAAA-GAATAAG
* * * * * * * *
1947 CTTT-TGCTTCCTAATCTCGAAGAA-AATGGA-GACTTTTA-TGAGAATTGATGCTTGTCGT-AT
1 -TTTATGGTGCCTAATCAC-AA-AAGAATGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
* * * ** * * * **
2007 TTAAGGGAAGAATTTTGA-TATTA-AGGAAAACAGT-GCAAAGAAAAG-ATTTC-AACGGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAACC
* * * *
2067 AAAACAATTAATAT-TGTTTATCCTAATGAAGAGAATGCA-
118 AAAGC-ATCAATATAT-TGTATCCTAATGAA-AGAAT-AAG
* * * * * *
2106 TTTATAGTGCCTAATCACAAAATAAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
* ** * *
2171 GCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCATTAA
64 GGACGAACTTAGACTTTAC-AAAAATGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
* *
2236 TATAGTGTATCCTTATGAGAAGACA-AAG
128 TATATTGTATCCTAATGA-AAGA-ATAAG
* * * * *
2264 TTTATGGTGCCTAATCATGAAAAGAATG--GG-GATTAGCATGACAATTCTTGTTTGTCTTATTT
1 TTTATGGTGCCTAATCA-CAAAAGAATGAAGGTCATTA-C-T-AGAA-TCATGTTTGTCTCATTT
* * * * * * ** * *
2326 AAGAGACAAACTT-TATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGC-AACACCAAAG
61 AAGGGACGAACTTAGACTT-TA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAA-ACCAAAG
** *
2389 CATCAATGCCA-TGTATCCT-ATCGAAAGGAATATG
122 CATCAAT-ATATTGTATCCTAAT-GAAA-GAATAAG
* * * * * * *
2423 CTTT-TGCTTG-CTAATCTCGAAGAA-AATGGA-GACTTTTA-TAAGAATTGATGCTTGTCAT-A
1 -TTTATG-GTGCCTAATCAC-AA-AAGAATGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCA
* * * ** * * * *
2482 TTTAAGGGAAGAATTTTGA-TATTA-AGGAAAACAGT-GCAAAGAAAAG-ATTTC-AACAGAAAA
58 TTTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAAC
* * * * ** **
2542 GAAAACAATCAATATCGTT-TATCCTAGTGAGGGGAATGTG
117 CAAAGC-ATCAATAT-ATTGTATCCTAATGA-AAGAATAAG
* * * * *
2582 TTTTTAGTGCCTAATCATAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
*
2647 GCACGAACTTAGACTTTACAAAAATCGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
64 GGACGAACTTAGACTTTACAAAAAT-GGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
*
2712 TATATTGTATCCTTATGAGAAGACA-AAG
128 TATATTGTATCCTAATGA-AAGA-ATAAG
** * * * *
2740 TTTATGGTGCCCTAATCGTGAAAAGAATG--GG-GATTAGCATGACAATTCATGTTTGTCTTACT
1 TTTATGGTG-CCTAATC-ACAAAAGAATGAAGGTCATTA-C-T-AGAA-TCATGTTTGTCTCATT
** * * * * * * ** * ** ***
2802 TAAGGGATAAACTT-TACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCCCCAAAG
60 TAAGGGACGAACTTAGAC-TTTA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAAACCAAAG
** * *
2866 CATCAATGCCA-TGTATCCTAACGAAAGGAATATG
122 CATCAAT-ATATTGTATCCTAATGAAA-GAATAAG
* * * * * * * *
2900 CTTT-TGCTTCCTAATCTCGAAGAA-AATGGA-GACTTTTA-TGAGAATTGATGCTTGTCGT-AT
1 -TTTATGGTGCCTAATCAC-AA-AAGAATGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
* * * ** * * * **
2960 TTAAGGGAAGAATTTTGA-TATTA-AGGAAAACAGT-GCAAAGAAAAG-ATTTC-AACAGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAACC
* * * *
3020 AAAACAATTAATATCGTT-TATCCTAATGAAGAGAATGCA-
118 AAAGC-ATCAATAT-ATTGTATCCTAATGAA-AGAAT-AAG
* * * * *
3059 TTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
* * ** * *
3124 GCATGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCATTAA
64 GGACGAACTTAGACTTTAC-AAAAATGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
* *
3189 TATAGTGTATCCTTATGAGAAGACA-AAG
128 TATATTGTATCCTAATGA-AAGA-ATAAG
* * * * * *
3217 TTTATGGTGCCTAATCATGAAAAGAATG--GG-GATTAGCAAGACAATTCTTGGTTGTCTTATTT
1 TTTATGGTGCCTAATCA-CAAAAGAATGAAGGTCATTA-CTAG--AA-TCATGTTTGTCTCATTT
* * * * * * ** * *
3279 AAGAGACAAACTT-TATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGC-AACACCAAAG
61 AAGGGACGAACTTAGACTT-TA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAA-ACCAAAG
** ** *
3342 CATCAATGCCA-TGTATCCTACCGAAAGGAATATG
122 CATCAAT-ATATTGTATCCTAATGAAA-GAATAAG
* * * * * * * *
3376 CTTT-TGCTTCCTAATCTCGAAGAA-AATGGA-GACTTTTA-TAAGAATTGATGCTTGTCAT-AT
1 -TTTATGGTGCCTAATCAC-AA-AAGAATGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
** * * ** * * * **
3436 TTAAGGGAAAAATTTTGA-TATTA-AGGAAAACAGT-GCAAAGAAAAG-ATTTC-AACAGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAACC
* * * **
3496 AAAACAATCAATATCGTT-TATCCTAATGAGAGGAATGTG
118 AAAGC-ATCAATAT-ATTGTATCCTAATGA-AAGAATAAG
* * * *
3535 TTTATTGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTAGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAAAA-GAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
* * * * *
3600 GCACGAACTTAGACTTTACAAAAAATGGTAGCAAG-AGAACCTTTCTTACGAAACGAAAGCATTA
64 GGACGAACTTAGACTTTAC-AAAAATGGTGGCAAGAAG-GCCTTTCTTACGAAACCAAAGCATCA
* * *
3664 ATATAGTGTATACTTATGAGAAGACA-AAG
127 ATATATTGTATCCTAATGA-AAGA-ATAAG
* * * * *
3693 TTTATGGTGCCTAATCATGAAAAGAATG--GG-GATTAGCATGACAATTCTTGTTTGTCTTATTT
1 TTTATGGTGCCTAATCA-CAAAAGAATGAAGGTCATTA-C-T-AGAA-TCATGTTTGTCTCATTT
* * * * * * ** * *
3755 AAGAGACAAACTT-TATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGC-AACACCAAAG
61 AAGGGACGAACTTAGACTT-TA-CAAAAATGGTGGCAAGAAGGC-CTTTCTTACGAA-ACCAAAG
** ** *
3818 CATCAATGCCA-TGTATCCTACCGAAAGGAATATG
122 CATCAAT-ATATTGTATCCTAATGAAA-GAATAAG
* * * * * * * * *
3852 CTTT-TGCTTCCTAATCTCGAAGAA-ATTGGA-GACTTTTA-TAAGAATTGATGCTTGTCGT-AT
1 -TTTATGGTGCCTAATCAC-AA-AAGAATGAAGGTC-ATTACT-AGAA-TCATGTTTGTC-TCAT
* * * ** * * * **
3912 TTAAGGGAAGAATTTTGA-TATTA-AGGAAAACAGT-GCAAAGAAAAG-ATTTC-AACGGAAAAG
59 TTAAGGGACGAACTTAGACT-TTACA--AAAATGGTGGC-AAG-AAGGCCTTTCTTAC-GAAACC
* * * **
3972 AAAACAATCAATATCGTT-TATCCTAATGAAGACAATGTG
118 AAAGC-ATCAATAT-ATTGTATCCTAATGAA-AGAATAAG
* ** * * *
4011 TTTATAGTGCCTAATCACAATATTAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGAG
1 TTTATGGTGCCTAATCACAA-AAGAATGAAGGTCATTACTAGAATCAT-GTTTGTCTCATTTAAG
* *
4076 GCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCAA
64 GGACGAACTTAGACTTTACAAAAA-TGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAA
* *
4141 TATATTTTATCCTTATGA
128 TATATTGTATCCTAATGA
4159 GAAGTGATGA
Statistics
Matches: 2677, Mismatches: 736, Indels: 766
0.64 0.18 0.18
Matches are distributed among these distances:
154 2 0.00
155 58 0.02
156 50 0.02
157 131 0.05
158 853 0.32
159 1351 0.50
160 201 0.08
161 10 0.00
162 21 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (154 bp):
TTTATGGTGCCTAATCACAAAAGAATGAAGGTCATTACTAGAATCATGTTTGTCTCATTTAAGGG
ACGAACTTAGACTTTACAAAAATGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCAATAT
ATTGTATCCTAATGAAAGAATAAG
Found at i:1360 original size:476 final size:476
Alignment explanation
Indices: 8--4162 Score: 6690
Period size: 476 Copynumber: 8.7 Consensus size: 476
1 CCCCCAC
* * *
8 AAGCATCAATGCCAATGTATCC-GACGAAAATGAATGTATGCGTTTTTGGCTTCCT-ATATCGAA
1 AAGCATCAATGCC-ATGTATCCTAACG-AAAGGAA--TATGC--TTTT-GCTTCCTAATCTCGAA
71 G-AAATGGA-ACTTTTAT-AGAATTGATGCTTGTCGTATTTAAAGGGAAGAATTTTGATATT-AG
59 GAAAATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTT-AAGGGAAGAATTTTGATATTAAG
*
132 GAAAACAGTGCAAAG-AAAGATTTCAACAGAAAAGAAAACAATTAATATCGTTTAT-CTAATGAA
123 GAAAACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAA
*
195 GAGGAATGCATTTATAGTGGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTG
188 GA-GAATGCGTTTATAGT-GCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTG
*
260 TCTCATTTGAGGCACGAAATTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAAC
251 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAAC
*
325 C-AAGCATCAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTG-AAAGAA
316 CAAAGCATCAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAA
* * *
388 TGGGGATT-GCATGACAATTCATGTTTGTCTTACTTAAGGGATAAACTTTACATCTATCAAGAAC
381 TGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAAC
*** *
452 GGCGGAAAGAAAACATTTTCTTGTGCCCCCA
446 GGCGGAAAGAAAACATTTTCTTGCAACACCA
* * * * *
483 AAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AAAAG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAAAA-
* * *
546 TGGAGACTATTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAAT
64 TGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAAC
*
611 AGTGCAAAGAAGAGATTTCAACAGAAAAG-AAACAATCAATATCGTTTATCCTAATGAAGAGAAT
129 AGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAAT
*
675 GCGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATTT
194 GCGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTT
740 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCAT
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCAT
*
805 CAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATT
324 CAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATT
* * *
870 AGCATGACAATTCATGTTTGTCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAA
389 AGCATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAA
*** *
935 GAAAACATTTTCTTGTGCCCCCA
454 GAAAACATTTTCTTGCAACACCA
* * * * *
958 AAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AAAAG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAAAA-
* *
1021 TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAAT
64 TGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAAC
1086 AGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAAT
129 AGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAAT
*
1151 GCGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATTT
194 GCGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTT
1216 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCAT
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCAT
*
1281 CAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATT
324 CAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATT
* * *
1346 AGCATGACAATTCATGTTTGTCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAA
389 AGCATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAA
*** *
1411 GAAAACATTTTCTTGTGCCCCCA
454 GAAAACATTTTCTTGCAACACCA
1434 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
*
1499 GAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
66 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
*
1564 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATTAATATCGTTTATCCTAATGAAGAGAATGC
131 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGC
*
1629 ATTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
* ** * *
1694 GGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCATTA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
*
1759 ATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
326 ATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
* * ** *
1824 CATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGA
391 CATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAAGA
*
1889 ACACATTTTCTTGCAACACCA
456 AAACATTTTCTTGCAACACCA
1910 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
*
1975 GAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
66 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
* * *
2040 TGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATTAATATTGTTTATCCTAATGAAGAGAATGC
131 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGC
* * *
2105 ATTTATAGTGCCTAATCACAAAATAAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
* ** * *
2170 GGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCATTA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
*
2235 ATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
326 ATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
* * ** *
2300 CATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGA
391 CATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAAGA
*
2365 ACACATTTTCTTGCAACACCA
456 AAACATTTTCTTGCAACACCA
* *
2386 AAGCATCAATGCCATGTATCCTATCGAAAGGAATATGCTTTTGCTTGCTAATCTCGAAGAAAATG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
*
2451 GAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
66 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
* * * *
2516 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAGTGAGGGGAATGT
131 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGC
* * *
2581 GTTTTTAGTGCCTAATCATAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
*
2646 GGCACGAACTTAGACTTTACAAAAATCGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
*
2711 ATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCCTAATCGTGAAAAGAATGGGGATTA
326 ATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTG-CCTAATCATGAAAAGAATGGGGATTA
* * *
2776 GCATGACAATTCATGTTTGTCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAG
390 GCATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAAG
*** *
2841 AAAACATTTTCTTGTGCCCCCA
455 AAAACATTTTCTTGCAACACCA
2863 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
*
2928 GAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
66 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
*
2993 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATTAATATCGTTTATCCTAATGAAGAGAATGC
131 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGC
* *
3058 ATTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
* * ** * *
3123 GGCATGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCATTA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
*
3188 ATATAGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
326 ATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
* * * * ** *
3253 CAAGACAATTCTTGGTTGTCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGA
391 CATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAAGA
*
3318 ACACATTTTCTTGCAACACCA
456 AAACATTTTCTTGCAACACCA
*
3339 AAGCATCAATGCCATGTATCCTACCGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
* *
3404 GAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAAAATTTTGATATTAAGGAAAACAG
66 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
3469 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATG-AGAGGAATG
131 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGA-GAATG
* * * *
3533 TGTTTATTGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTAGTCTCATTTG
195 CGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTG
* * * *
3598 AGGCACGAACTTAGACTTTACAAAAAATGGTAGCAAG-AGAACCTTTCTTACGAAACGAAAGCAT
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAG-GCCTTTCTTACGAAACCAAAGCAT
* * *
3662 TAATATAGTGTATACTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATT
324 CAATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATT
* * ** *
3727 AGCATGACAATTCTTGTTTGTCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAA
389 AGCATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAA
*
3792 GAACACATTTTCTTGCAACACCA
454 GAAAACATTTTCTTGCAACACCA
* *
3815 AAGCATCAATGCCATGTATCCTACCGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAATTG
1 AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
3880 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
66 GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
* * *
3945 TGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGACAATGT
131 TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGC
* *
4010 GTTTATAGTGCCTAATCACAATATTAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
*
4075 GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
*
4140 ATATATTTTATCCTTATGAGAAG
326 ATATATTGTATCCTTATGAGAAG
4163 TGATGACAAC
Statistics
Matches: 3497, Mismatches: 162, Indels: 41
0.95 0.04 0.01
Matches are distributed among these distances:
469 7 0.00
470 11 0.00
471 6 0.00
472 141 0.04
473 126 0.04
474 55 0.02
475 262 0.07
476 2441 0.70
477 448 0.13
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
AAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAAATG
GAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAACAG
TGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAATGC
GTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATTTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCATCA
ATATATTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAG
CATGACAATTCATGTTTGTCTTACTTAAGAGACAAACTTTACATCTATCAAAAACGGCGGAAAGA
AAACATTTTCTTGCAACACCA
Found at i:9193 original size:42 final size:42
Alignment explanation
Indices: 9138--9247 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
9128 TTCTTCTCTC
* *
9138 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCCCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
* *
9180 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
9222 CTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
9248 TCTTTCTCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
Found at i:11762 original size:476 final size:476
Alignment explanation
Indices: 10870--20800 Score: 16799
Period size: 476 Copynumber: 20.9 Consensus size: 476
10860 GTTTTCATCA
*
10870 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
10935 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * *
11000 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
* *
11065 AAGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* * *
11130 CAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATTAATATTGTTTATCCTAATGAAGAGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
* * *
11195 TGCGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
* * * *
11260 TGAGGCACGAACTTAGACTTTACAAAAAATGGTAGCAAG-AGAACCTTTCTTACGAAACGAAAGC
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAG-GCCTTTCTTACGAAACCAAAGC
* * *
11324 ATTAATATAGTGTATACTTATG
455 ATCAATATATTGTATCCTTATG
*
11346 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
11411 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
*
11476 CCAAAGCATCAATGCCATGTATCCTAACGAAAGCAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
11541 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* * *
11606 TAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
11671 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
*
11736 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACTAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
11801 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
11822 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
11887 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
11952 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAA
12015 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
195 AA-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
*
12080 AATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
259 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
*
12145 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
* ** *
12210 TTTGAGGCACGAAATTAGACTTTACAAAAATTGGTGGCAAGAAAACCTTTCTTACGAAACGAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
* *
12275 CATTAATATAGTGTATCCTTATG
454 CATCAATATATTGTATCCTTATG
*
12298 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
12363 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
*
12428 CCAAAGCATCAATGCCATGTATCCTAACGAAAGCAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
12493 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
12558 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
12623 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
12688 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
12753 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
12774 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
12839 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
12904 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAA
*
12967 AAGTGGAGACTTTTACAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
195 AA-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
*
13032 AATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
259 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
* * * *
13097 AATGCGTTTATAGTGCCTAATCCCAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
* * * * *
13162 TTTGAGGCATGAACTTAGACTTTACAAAAAATGGTAGCAAG-AGAACCTTTCTTACGAAACGAAA
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAG-GCCTTTCTTACGAAACCAAA
* * *
13226 GCATTAATATAGTGTATACTTATG
453 GCATCAATATATTGTATCCTTATG
*
13250 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
13315 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
*
13380 CCAAAGCATCAATGCCATGTATCCTATCGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
*
13445 ATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
13510 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
* *
13575 TGTGTTTTTAGTGCCTAATCATAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
13640 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
13705 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
13726 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
13791 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
13856 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
* *
13921 ATGGAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
*
13986 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATTAATATCGTTTATCCTAATGAAGAGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
** *
14051 TGCATTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
14116 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
14181 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
14202 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
14267 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
14332 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAA
14395 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
195 AA-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
* *
14460 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGG
259 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
14525 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
14590 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
*
14655 CATCAATATATTTTATCCTTATG
454 CATCAATATATTGTATCCTTATG
*
14678 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
*
14743 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAATGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
14808 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAA
14871 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
195 AA-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
*
14936 AATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
259 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
*
15001 AATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
15066 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
15131 CATCAATATATTGTATCCTTATG
454 CATCAATATATTGTATCCTTATG
*
15154 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
15219 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
15284 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
* *
15349 ATGGAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
15414 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATTAATATTGTTTATCCTAATGAAGAGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
** * *
15479 TGCATTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
* ** *
15544 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
* *
15609 TTAATATAGTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
15630 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
15695 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
*
15760 CCAAAGCATCAATGCCATGTATCCTACCGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
15825 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
15890 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
*
15955 TGTGTTTATAGTGCCTAATCATAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
16020 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
16085 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
16106 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
16171 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * *
16236 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
*
16301 ATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* * *
16366 CAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATTAATATTGTTTATCCTAATGAAGAGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
* * *
16431 TGCGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
* * *
16496 TGAGGCACGAACTTAGACTTTACAAAAA-TGGTAGCAAG-AGAACCTTTCTTACGAAACGAAAGC
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAG-GCCTTTCTTACGAAACCAAAGC
* * *
16559 ATTAATATAGTGTATACTTATG
455 ATCAATATATTGTATCCTTATG
*
16581 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
16646 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
16711 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
16776 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
16841 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
16906 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
** *
16971 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAACCTTTCTTACGAAACGAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
* *
17036 TTAATATAGTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
17057 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
17122 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
17187 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
17252 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
17317 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
17382 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
17447 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
17512 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
17533 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
17598 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
17663 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAA
17726 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
195 AA-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
*
17791 AATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
259 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
*
17856 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTCGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
** *
17921 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAACCTTTCTTACGAAACGAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
* *
17986 CATTAATATAGTGTATCCTTATG
454 CATCAATATATTGTATCCTTATG
*
18009 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * * *** *
18074 TCTTATTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
*
18139 CCAAAGCATCAATGCCATGTATCCTATCGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
18204 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
18269 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
18334 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
18399 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
18464 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
18485 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
18550 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
18615 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTCGAA-AAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
18679 AGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
196 A-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
*
18744 ATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGA
260 ACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGA
18809 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCAT
325 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCAT
18874 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA-GCCTTTCTTACGAAACCAAAGC
390 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGC
*
18938 ATTAATATATTGTATCCTTATG
455 ATCAATATATTGTATCCTTATG
18960 AGAAGACAAAGTTTATGGTGCCTAATCAGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTT
1 AGAAGACAAAGTTTATGGTGCCTAATCA-TGAAAAGAATGGGGATTAGCATGACAATTCATGTTT
* *
19025 GTCTTACTTAAGAGATAAACTTTAATTCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCC
65 GTCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCC
* * *
19090 CCCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAA
130 CCCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAA
*
19155 AATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAA
195 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
* * *
19220 ACAGTGCAAAGAAAAGATTTCAACGGAAAAGAAAACAATTAATATTGTTTATCCTAATGAAGAGA
260 ACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGA
* * *
19285 ATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTAGTCTCAT
325 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCAT
* *
19350 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTACGAAACGAAAGC
390 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGC
* *
19415 ATTAATATAGTGTATCCTTATG
455 ATCAATATATTGTATCCTTATG
*
19437 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCTTGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * * *** *
19502 TCTTACTTAAGAGACAAACTTTATTTCTATCAAAAACGGTGGAAAGAACACATTTTCTTGCAACA
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
*
19567 CCAAAGCATCAATGCCATGTATCCTAACGAAAGCAATATGCTTTTGCTTCCTAATCTCGAAGAAA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
19632 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
196 ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
* *
19697 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAGGGGAA
261 CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
19762 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
326 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
19827 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
391 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
19892 TCAATATATTGTATCCTTATG
456 TCAATATATTGTATCCTTATG
*
19913 AGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* ** *
19978 TCTTACTTAAGGGATAAACTTTACATCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCCC
66 TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
* * * * *
20043 CCAAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTTTGCTTCCTAATGTTC-AA-AA
131 CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAAT-CTCGAAGAA
20106 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
195 AA-TGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
*
20171 AATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
259 AACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAG
* *
20236 AATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCTCGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCA
20301 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAA-GCCTTTCTTACGAAACCAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAG
*
20365 CATCAATATAGTGTATCCTTATG
454 CATCAATATATTGTATCCTTATG
* *
20388 AGAAGACAAAGTTCATGGTGCCTAATCGTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
1 AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
* * *
20453 TCTTACTTAAGGGATAAACTTTACATTCTATCAAGAACGGCGGAAAGAAAACATTTTCTTGTGCC
66 TCTTACTTAAGAGATAAACTTTA-TTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCC
20518 CCCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAA
130 CCCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAA
* * *
20583 AATGGAGACCTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAA-TTTGATATTAAGGAAA
195 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
* *
20647 ATAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATTAATATCGTTTATCCTAATGAAGAGA
260 ACAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGA
**
20712 ATGCATTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCG-TTGTCCTCA
325 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGT-CTCA
20776 TTTGAGGCAAACGAACTTAGACTTT
389 TTTGAGGC--ACGAACTTAGACTTT
20801 TTTTCTTCGA
Statistics
Matches: 8926, Mismatches: 495, Indels: 67
0.94 0.05 0.01
Matches are distributed among these distances:
474 6 0.00
475 825 0.09
476 7971 0.89
477 124 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (476 bp):
AGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACAATTCATGTTTG
TCTTACTTAAGAGATAAACTTTATTTCTATCAAAAACGGCGGAAAGAAAACATTTTCTTGTGCCC
CCAAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTTTGCTTCCTAATCTCGAAGAAA
ATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAAA
CAGTGCAAAGAAAAGATTTCAACAGAAAAGAAAACAATCAATATCGTTTATCCTAATGAAGAGAA
TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCTCGTTTGTCTCATT
TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAGGCCTTTCTTACGAAACCAAAGCA
TCAATATATTGTATCCTTATG
Found at i:16923 original size:159 final size:158
Alignment explanation
Indices: 11002--20732 Score: 2671
Period size: 159 Copynumber: 61.3 Consensus size: 158
10992 TTGTGCCCCC
* * *
11002 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * * * *
11064 AAAGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * * *
11129 ACAGTGCAAAGAAAAGATTTC-AACGGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * ** *
11160 AAAACAATTAATATTGTTTATCCTAATGA-AGAGAATGCGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * *
11223 AATGAAG-TTCATTACT-AGAA-TCCTCGTTAGTC-TCATTTGAGGCACGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* * * *
11283 A-AAAAATGGTAGC-AAGAGAACCTTTCTTAC-GAAACG
121 AGGAAAACGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * * *
11319 AAAGCATTAATATAGTGTATACTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
11382 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
11445 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * * *
11478 AAAGCATCAATGCCATGTATCCTAACGAAAGCAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * *
11540 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
** * * *
11605 ATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
11636 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
11700 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* ** * * *
11760 -AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-TAAACC
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
11795 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
11858 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
11920 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
11954 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTTC-AAAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAAT-CTCGAAAAG
* * *
12015 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
63 AA-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
** * * *
12080 AATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * *
12112 AAAACAATCAATATCGTTTATCCTAATGA-AGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * * *
12175 AATGAAGATCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAAATTAGACT-TTACA
63 AATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-A
* *
12236 --AAAATTGGTGGC-AAGAAAACCTTTCTTAC-GAAACG
122 GGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * *
12271 AAAGCATTAATATAGTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
12334 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
12397 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * * *
12430 AAAGCATCAATGCCATGTATCCTAACGAAAGCAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * *
12492 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
12557 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
12588 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
12652 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* ** * *
12712 -AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
12747 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
12810 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
12872 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
12906 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTTC-AAAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAAT-CTCGAAAAG
* * * *
12967 AAGTGGAGACTTTTACAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
63 AA-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
** * * *
13032 AATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * ** *
13064 AAAACAATCAATATCGTTTATCCTAATGA-AGAGAATGCGTTTATAGTGCCTAATC-CCAAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * *
13127 AATGAAG-TTCATTACT-AGAA-TCCTCGTTAGTC-TCATTTGAGGCATGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* * * *
13187 A-AAAAATGGTAGC-AAGAGAACCTTTCTTAC-GAAACG
121 AGGAAAACGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * * *
13223 AAAGCATTAATATAGTGTATACTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
13286 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
13349 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * *
13382 AAAGCATCAATGCCATGTATCCT-ATCGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA
1 AAAGCATCAATATCGTGTATCCTAAT-GAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AA
* * * *
13444 -AATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAA
62 GAATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
* * * *
13508 AACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
13540 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTTTAGTGCCTAATCAT--AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATC-TCGAAAA-G
* * * * * * * *
13603 AATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA
63 AATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-A
* ** * *
13664 --AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
122 GGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
13699 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
13762 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
13824 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * *
13858 AAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * * * *
13920 AATGGAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
13985 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * *** *
14016 AAAACAATTAATATCGTTTATCCTAATGA-AGAGAATGCATTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * *
14079 AATGAAG-TTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* ** * *
14139 A--AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
121 AGGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
14175 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
14238 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
14300 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
14334 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTTC-AAAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAAT-CTCGAAAAG
* * *
14395 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
63 AA-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
* * * *
14460 AACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
14492 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
14556 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* ** * *
14616 -AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * * *
14651 AAAGCATCAATATATTTTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
14714 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * ** *** *
14777 AATGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
14810 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTTC-AAAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAAT-CTCGAAAAG
* * *
14871 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
63 AA-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
** * * *
14936 AATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * ** *
14968 AAAACAATCAATATCGTTTATCCTAATGA-AGAGAATGCGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * * *
15031 AATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA
63 AATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-A
* ** * *
15092 --AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
122 GGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
15127 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
15190 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
15252 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * *
15286 AAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * * * *
15348 AATGGAGACTTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
15413 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *** *
15444 AAAACAATTAATATTGTTTATCCTAATGA-AGAGAATGCATTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * *
15507 AATGAAG-TTCATTACT-AGAA-TCCTCGTTAGTC-TCATTTGAGGCACGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* * *
15567 A-AAAAATGGTGGC-AAGAAAACCTTTCTTAC-GAAACG
121 AGGAAAACGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * *
15603 AAAGCATTAATATAGTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
15666 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
15729 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * ** * *
15762 AAAGCATCAATGCCATGTATCCTACCGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * *
15824 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
15889 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * *
15920 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAT--AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATC-TCGAAAA-G
* * * * * * * *
15983 AATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA
63 AATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-A
* ** * *
16044 --AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
122 GGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
16079 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
16142 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
16205 AACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * *
16238 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * * *
16300 AATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * * *
16365 ACAGTGCAAAGAAAAGATTTC-AACGGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * ** *
16396 AAAACAATTAATATTGTTTATCCTAATGA-AGAGAATGCGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * *
16459 AATGAAG-TTCATTACT-AGAA-TCCTCGTTAGTC-TCATTTGAGGCACGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* * *
16519 A--AAAATGGTAGC-AAGAGAACCTTTCTTAC-GAAACG
121 AGGAAAACGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * * *
16554 AAAGCATTAATATAGTGTATACTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
16617 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
16680 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * *
16713 AAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * *
16775 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
16840 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
16871 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
16935 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* *
16995 -AAAATTGGTGGC-AAGAAAACCTTTCTTAC-GAAACG
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * *
17030 AAAGCATTAATATAGTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
17093 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
17156 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * *
17189 AAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * *
17251 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
17316 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
17347 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
17411 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* ** * *
17471 -AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
17506 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
17569 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
17631 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
17665 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTTC-AAAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAAT-CTCGAAAAG
* * *
17726 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
63 AA-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
** * * *
17791 AATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * *
17823 AAAACAATCAATATCGTTTATCCTAATGA-AGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * *
17886 AATGAAGATCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA
63 AATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-A
* *
17947 --AAAATTGGTGGC-AAGAAAACCTTTCTTAC-GAAACG
122 GGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * *
17982 AAAGCATTAATATAGTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * ***
18045 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTATTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
18108 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * *
18141 AAAGCATCAATGCCATGTATCCT-ATCGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA
1 AAAGCATCAATATCGTGTATCCTAAT-GAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AA
* * *
18203 -AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
62 GAATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
* * * *
18267 AACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
18299 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
18363 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* ** * *
18423 -AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
18458 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
18521 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
18583 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
18617 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTCGAAAA-A
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAAAAGA
* * *
18679 AGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
64 A-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
** * * *
18744 ATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * *
18775 AAAACAATCAATATCGTTTATCCTAATGA-AGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * * *
18838 AATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA
63 AATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-A
* * * *
18899 --AAAATTGGTGGC-AAG-AAGCCTTTCTTAC-GAAACC
122 GGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
* ** * * * *
18933 AAAGCATTAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAGT-GAAAAG
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC--TCGAAAAG
* ** * * * * * * **
18996 AATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGAGATA-AACTTT-A-ATTCTATCA
63 AATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATATT-AAGGA
* * ** *** *
19058 AGAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
125 A-AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * *
19093 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * * *
19155 AATGGAGACTTTTATAAGAATTGATGCTTGTCGTATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * * *
19220 ACAGTGCAAAGAAAAGATTTC-AACGGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * ** *
19251 AAAACAATTAATATTGTTTATCCTAATGA-AGAGAATGCGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * * *
19314 AATGAAG-TTCATTACT-AGAA-TCCTCGTTAGTC-TCATTTGAGGCACGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* * *
19374 A--AAAATTGGTGGC-AAGAAAGCCTTTCTTAC-GAAACG
121 AGGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * *
19410 AAAGCATTAATATAGTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCAT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * * ***
19473 ATGGGGATTAGCATGACAATTCTTGTTTGTCTTACTTAAGAGACA-AACTTT-ATTTCTATCAAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * * * *
19536 AACGGTGGAAAGAACACATTTTCTTGCA-ACACC
126 AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * * *
19569 AAAGCATCAATGCCATGTATCCTAACGAAAGCAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * *
19631 AATGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
* * * *
19696 ACAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * * *
19727 AAAACAATCAATATCGTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAA-GA
* * * * * * * *
19791 ATGAAGGTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTACA-
64 ATGGAGAT-TTTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-AG
* ** * *
19851 -AAAATTGGTGGC-AAGAAGGCCTTTCTTAC-GAAACC
123 GAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
** * * * *
19886 AAAGCATCAATATATTGTATCCTTATGAGAAGACA-AAGTTTATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * **
19949 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATCT-ATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATAT-TAAGGAA
* * ** *** *
20011 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
* * * * *
20045 AAAGCATCAATGTCGTGTATCCTAATGAAAGGAATAAGCTTT-T-GCTTCCTAATGTTC-AAAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAAT-CTCGAAAAG
* * *
20106 AAGTGGAGACTTTTATAAGAATTGATGCTTGTCATATTTAAGGGAAGAATTTTGATATTAAGGAA
63 AA-TGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAA
** * * *
20171 AATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
126 AACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * ** *
20203 AAAACAATCAATATCGTTTATCCTAATGA-AGAGAATGCGTTTATAGTGCCTAATCAC-AAAATG
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATCTCGAAAA-G
* * * * * *
20266 AATGAAG-TTCATTACT-AGAA-TCCTCGTTTGTC-TCATTTGAGGCACGAACTTAGACT-TTAC
63 AATGGAGATT--TTA-TAAGAATTCAT-GTTTGTCAT-ATTTAAGGGAAGAACTTTGA-TATTA-
* * * *
20326 A--AAAATTGGTGGC-AAG-AAGCCTTTCTTAC-GAAACC
121 AGGAAAA-CGGT-GCAAAGAAAACATTTCTTACAGAAACG
* * * * * *
20361 AAAGCATCAATATAGTGTATCCTTATGAGAAGACA-AAGTTCATGGTGCCTAATCGT-GAAAAGA
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGA-ATATGTTTATAGTGCCTAATC-TCGAAAAGA
* ** * * * * * * **
20424 ATGGGGATTAGCATGACAATTCATGTTTGTCTTACTTAAGGGATA-AACTTT-ACATTCTATCAA
64 ATGGAGATT-TTATAAGAATTCATGTTTGTCATATTTAAGGGA-AGAACTTTGATATT-AAGGAA
* * ** *** *
20487 GAACGGCGGAAAGAAAACATTTTCTT-GTGCCCCC
126 -AACGGTGCAAAGAAAACA-TTTCTTACAGAAACG
** * * * *
20521 AAAGCATCAATGCCATGTATCCTAACGAAAGGAATATGCTTT-T-GCTTCCTAATCTCGAAGAA-
1 AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATG-TTTATAG-TGCCTAATCTCGAA-AAG
* * * * *
20583 AATGGAGACCTTTATGAGAATTGATGCTTGTCGTATTTAAGGGAAGAA-TTTGATATTAAGGAAA
63 AATGGAGA-TTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAA
** * * *
20647 ATAGTGCAAAGAAAAGATTTC-AACAGAAAAG
127 ACGGTGCAAAGAAAACATTTCTTACAGAAACG
* * * ***
20678 AAAACAATTAATATCGTTTATCCTAATGA-AGAGAATGCATTTATAGTGCCTAATC
1 AAAGC-ATCAATATCGTGTATCCTAATGAGAG-GAATATGTTTATAGTGCCTAATC
20733 ACAAAATGAA
Statistics
Matches: 6815, Mismatches: 1939, Indels: 1638
0.66 0.19 0.16
Matches are distributed among these distances:
155 1 0.00
156 28 0.00
157 315 0.05
158 2072 0.30
159 3886 0.57
160 502 0.07
161 11 0.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (158 bp):
AAAGCATCAATATCGTGTATCCTAATGAGAGGAATATGTTTATAGTGCCTAATCTCGAAAAGAAT
GGAGATTTTATAAGAATTCATGTTTGTCATATTTAAGGGAAGAACTTTGATATTAAGGAAAACGG
TGCAAAGAAAACATTTCTTACAGAAACG
Done.