Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold228
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4123243
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
File 6 of 27
Found at i:800309 original size:52 final size:52
Alignment explanation
Indices: 800177--800316 Score: 185
Period size: 52 Copynumber: 2.7 Consensus size: 52
800167 AAAAGTTACT
* *
800177 TGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAGATTTGCC
1 TGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
*** *
800229 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
*
800281 TGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 TGCATGTATCGATACATAAGAT-AGTGTATCGATACA
800317 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCC
Found at i:800323 original size:13 final size:13
Alignment explanation
Indices: 800305--800329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
800295 CAAAGATCGG
800305 TGTATCGATACAA
1 TGTATCGATACAA
800318 TGTATCGATACA
1 TGTATCGATACA
800330 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:802493 original size:13 final size:13
Alignment explanation
Indices: 802475--802499 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
802465 ATTACTCAAA
802475 TGTATCGATACAT
1 TGTATCGATACAT
802488 TGTATCGATACA
1 TGTATCGATACA
802500 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:802564 original size:52 final size:52
Alignment explanation
Indices: 802508--802632 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
802498 CACCGATCTT
* *
802508 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATAAAA
*
802560 TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATAAAA
*
802612 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
802633 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATCTGCCCAGATGTATCGATACACTATAAAA
Found at i:810927 original size:31 final size:31
Alignment explanation
Indices: 810889--811033 Score: 199
Period size: 31 Copynumber: 4.7 Consensus size: 31
810879 AAAAAAAAAA
810889 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
810920 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
810951 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
810980 TTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 ---AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
811013 AAAGTCCACGACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
811034 TTTTTTCTTT
Statistics
Matches: 103, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
29 5 0.05
30 23 0.22
31 49 0.48
32 22 0.21
33 4 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:811034 original size:62 final size:63
Alignment explanation
Indices: 810889--811057 Score: 215
Period size: 62 Copynumber: 2.7 Consensus size: 63
810879 AAAAAAAAAA
810889 AAAGTCCACGACTCAGTGGCAATCTCTTCTC---AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGC-ATC-CTTCTCTTTAAAGTCCACGACTCAGTGGCAATCTCTGCTC
* *
810951 AAAGTCCACGACGCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCAATCTCTG-CTC
* * * *
811013 AAAGTCCACGACTCAGTGGCAT-TTTTTCTTTAAAGCCCACAACTC
1 AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTC
811058 CATGGCACCA
Statistics
Matches: 96, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
60 6 0.06
61 25 0.26
62 45 0.47
63 20 0.21
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (63 bp):
AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCAATCTCTGCTC
Found at i:811079 original size:34 final size:34
Alignment explanation
Indices: 811041--811637 Score: 391
Period size: 34 Copynumber: 18.4 Consensus size: 34
811031 GCATTTTTTC
* * *
811041 TTTAAAGCCCACAACTCCATGGCACCATGTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
811075 TTT-AAGTCCACAACGCCGTGGCA-C-----CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * * *
811102 TTTAAAGCCCACAATTTCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
811136 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
811164 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
811198 CTTT-AAGTCCACAACTCTGTGGCA-C-----CCG
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
811226 TTT-AAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
811258 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
811292 TTTCAAAGCCTACAACTCCGTGGCACCTTCTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
**
811326 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCT
811362 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* ****
811396 TTTAAAGCCCACAACTCTGTGGCACC-TACAACT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * **
811429 TTGT---G-GCAC-TCT-C-TTTC-CC-TTTT--T
1 TT-TAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
811453 A---AAGCCCACAACTTCGTGACACCTTTTT-CT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
811483 GTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
811520 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
811554 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* * *
811590 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-TTCCT
*
811624 TCCTAAAGCCCACA
1 T-TTAAAGCCCACA
811638 CAAGTCGGTG
Statistics
Matches: 449, Mismatches: 61, Indels: 104
0.73 0.10 0.17
Matches are distributed among these distances:
23 1 0.00
24 4 0.01
25 2 0.00
26 4 0.01
27 34 0.08
28 40 0.09
29 6 0.01
30 4 0.01
31 1 0.00
32 6 0.01
33 83 0.18
34 145 0.32
35 54 0.12
36 22 0.05
37 43 0.10
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.32
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
Found at i:811106 original size:61 final size:62
Alignment explanation
Indices: 811041--811612 Score: 349
Period size: 70 Copynumber: 8.9 Consensus size: 62
811031 GCATTTTTTC
* * * * *
811041 TTTAAAGCCCACAACTCCATGGCACCATGTTCCT-TTTAAGTCCACAACGCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
* * *
811102 TTTAAAGCCCACAATTTCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
* * * *
811164 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCTGTGGCACCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
* *
811226 TTT-AAGCCCACAACTCCGTGGCACCTTCTTC-T-TTTCAAAGCCCACAACTCCGTGGCACCTTC
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCATCTTT--AAGTCCACAACTCCGTGGCA-C--C
811288 TTCT
61 --CT
* * * **
811292 TTTCAAAGCCTACAACTCCGTGGCACCTTCTTC-T-TTTAAAGCCCACAACTTTGTGGCACTCTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCATCTTT-AAGTCCACAACTCCGTGGCA--C--
811355 TTTTCCT
60 ----CCT
* *
811362 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTC-T-TTTAAAGCCCACAACTCTGTGGCA-CC-
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCATCTTT-AAGTCCACAACTCCGTGGCACCCT
** * * * * * *
811422 --T-------ACAACTTTGTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTTCGTGACACCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CT-TTTTCATCTTT-AAGTCCACAACTCCGTGGCACC--
811478 TTTCT
61 ---CT
* *
811483 GTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-CCTTTTCAAAGCCCACAACTCCGTGGCACT
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCATC-TTT--AAGTCCACAACTCCGTGGCAC-
*
811547 TTTTTCT
60 ----CCT
*
811554 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-CCTTTTAAGTCCACAACTCCGTGGCA
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCATC-TTTAAGTCCACAACTCCGTGGCA
811613 TCTTTCTCCC
Statistics
Matches: 429, Mismatches: 39, Indels: 79
0.78 0.07 0.14
Matches are distributed among these distances:
50 13 0.03
51 2 0.00
52 4 0.01
53 1 0.00
54 21 0.05
55 1 0.00
58 1 0.00
59 3 0.01
60 2 0.00
61 72 0.17
62 89 0.21
64 2 0.00
66 4 0.01
67 19 0.04
68 51 0.12
70 103 0.24
71 38 0.09
72 3 0.01
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (62 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
Found at i:811157 original size:62 final size:62
Alignment explanation
Indices: 811041--811284 Score: 316
Period size: 62 Copynumber: 4.0 Consensus size: 62
811031 GCATTTTTTC
* * ** * * *
811041 TTTAAAGCCCACAACTCCATGGCACCATGTTCCT-TTTAAGTCCACAACGCCGTGGCACCCT
1 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
*
811102 TTTAAAGCCCACAATTTCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
* *
811164 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCTGTGGCACCCG
1 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
* * * *
811226 TTT-AAGCCCACAACTCCGTGGCACCTTCTTC-T-TTTCAAAGCCCACAACTCCGTGGCACC
1 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT--AAGTCCACAACTCCGTGGCACC
811285 TTCTTCTTTT
Statistics
Matches: 164, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
59 3 0.02
60 1 0.01
61 72 0.44
62 88 0.54
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (62 bp):
TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
Found at i:811386 original size:70 final size:70
Alignment explanation
Indices: 811229--811617 Score: 437
Period size: 70 Copynumber: 5.4 Consensus size: 70
811219 GCACCCGTTT
* *
811229 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TTCTT-C
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTTCC
811291 TTTTCA
65 TTTTCA
* * **
811297 AAGCCTACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCT
811362 TTTCA
66 TTTCA
*
811367 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACCTACAACTTTG
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA-CT----C----
*
811432 TGGCACTCTCTTTCCCTTTTTA
57 T-----T-T-TTT-CCTTTTCA
* * *
811454 AAGCCCACAACTTCGTGACACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCC
811519 TTTTCA
65 TTTTCA
* *
811525 AAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCT
811590 TTT--
66 TTTCA
* *
811593 AAGTCCACAACTCCGTGGCATCTTT
1 AAGCCCACAACTCCGTGGCACCTTT
811618 CTCCCTTCCT
Statistics
Matches: 281, Mismatches: 19, Indels: 42
0.82 0.06 0.12
Matches are distributed among these distances:
67 20 0.07
68 54 0.19
69 4 0.01
70 96 0.34
71 35 0.12
72 2 0.01
73 1 0.00
74 1 0.00
75 1 0.00
79 2 0.01
83 1 0.00
84 1 0.00
85 1 0.00
86 3 0.01
87 36 0.13
88 23 0.08
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (70 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCT
TTTCA
Found at i:811482 original size:87 final size:88
Alignment explanation
Indices: 811336--811508 Score: 285
Period size: 87 Copynumber: 2.0 Consensus size: 88
811326 TTTAAAGCCC
* * *
811336 ACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTA
1 ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGACACCTTTTTCTGTTTA
*
811400 AAGCCCACAACTCTGTGGCACCT
66 AAGCCCACAACTCCGTGGCACCT
* *
811423 ACAACTTTGTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTTCGTGACACCTTTTTCTGTTTA
1 ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGACACCTTTTTCTGTTTA
811488 AAGCCCACAACTCCGTGGCAC
66 AAGCCCACAACTCCGTGGCAC
811509 TCTTTTTCCC
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 55 0.70
88 24 0.30
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (88 bp):
ACAACTTTGTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGACACCTTTTTCTGTTTA
AAGCCCACAACTCCGTGGCACCT
Found at i:811508 original size:158 final size:157
Alignment explanation
Indices: 811290--811578 Score: 479
Period size: 158 Copynumber: 1.8 Consensus size: 157
811280 GCACCTTCTT
* * **
811290 CTTTTCAAAGCCTACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTT
1 CTTTTCAAAGCCCACAACTCCGTGACACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT
* *
811355 TTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
66 TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
811420 CCTACAACTTTGTGGCACTCTCTTTCC
131 CCTACAACTTTGTGGCACTCTCTTTCC
* * *
811447 CTTTTTAAAGCCCACAACTTCGTGACACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCT
1 CTTTTCAAAGCCCACAACTCCGTGACACCTTCTTCT-TTTAAAGCCCACAACTCCGTGGCACTCT
*
811512 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGC
65 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGC
811577 AC
130 AC
811579 TCTTTTTCCC
Statistics
Matches: 121, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
157 31 0.26
158 90 0.74
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (157 bp):
CTTTTCAAAGCCCACAACTCCGTGACACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT
TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
CCTACAACTTTGTGGCACTCTCTTTCC
Found at i:811658 original size:104 final size:102
Alignment explanation
Indices: 811449--811637 Score: 247
Period size: 104 Copynumber: 1.8 Consensus size: 102
811439 CTCTTTCCCT
* **
811449 TTTTAAAGCCCACAACTTCGTGACACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGACACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTT
* * *
811514 TTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC
66 CTCCCTTCTCAAAGCCCACAACTCCGTGGCAC--TCTTC
* * *
811553 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTT
1 TTTTAAAGCCCACAACTCCGTGACAC-CTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTT
811617 TCTCCCTTC-CTAAAGCCCACA
65 TCTCCCTTCTC-AAAGCCCACA
811638 CAAGTCGGTG
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
103 1 0.01
104 45 0.60
105 29 0.39
ACGTcount: A:0.21, C:0.34, G:0.11, T:0.33
Consensus pattern (102 bp):
TTTTAAAGCCCACAACTCCGTGACACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTT
CTCCCTTCTCAAAGCCCACAACTCCGTGGCACTCTTC
Found at i:811665 original size:33 final size:35
Alignment explanation
Indices: 811622--811691 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
811612 ATCTTTCTCC
811622 CTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
811656 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
811690 CT
1 CT
811692 AAGCCCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (35 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:811665 original size:104 final size:102
Alignment explanation
Indices: 811453--811670 Score: 235
Period size: 104 Copynumber: 2.1 Consensus size: 102
811443 TTCCCTTTTT
* ** *
811453 AAAGCCCACAACTTCGTGACACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAAGCCCACAACTCCGTGACACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTCTCC
* * **
811518 CTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTT
66 CTTCTCAAAGCCCACAACTCCGTGGCAC--TCTTCTTCC
* * *
811557 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTCTC
1 AAAGCCCACAACTCCGTGACAC-CTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTCTC
* *
811621 CCTTC-CTAAAGCCCACACAAGTCGGTGGCAAC-CTTCTTCC
65 CCTTCTC-AAAG-CC-CACAACTCCGTGGC-ACTCTTCTTCC
811661 AAAGCCCACA
1 AAAGCCCACA
811671 CAAGTCGGTG
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
103 1 0.01
104 50 0.52
105 31 0.32
106 12 0.12
107 2 0.02
ACGTcount: A:0.22, C:0.35, G:0.12, T:0.30
Consensus pattern (102 bp):
AAAGCCCACAACTCCGTGACACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTCTCC
CTTCTCAAAGCCCACAACTCCGTGGCACTCTTCTTCC
Found at i:811813 original size:49 final size:49
Alignment explanation
Indices: 811691--813136 Score: 1782
Period size: 49 Copynumber: 30.7 Consensus size: 49
811681 GCAACCCTTC
* *
811691 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * *
811743 TAAGTCTAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
811792 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
811835 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
811884 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
811927 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
811976 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-T-TT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812019 TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812068 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
812117 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812166 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
812215 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812258 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
812307 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
812350 TAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
812399 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-T-TT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812442 TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812491 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
812540 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812589 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
812638 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812681 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
812730 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-T-TT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
812773 TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
812822 TAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
812865 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
812914 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
812957 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
813006 TAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
813049 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* *
813101 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
813137 ACATCCTTTT
Statistics
Matches: 1213, Mismatches: 112, Indels: 138
0.83 0.08 0.09
Matches are distributed among these distances:
43 423 0.35
44 3 0.00
45 8 0.01
47 10 0.01
48 3 0.00
49 691 0.57
50 3 0.00
52 72 0.06
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:811897 original size:92 final size:92
Alignment explanation
Indices: 811740--813145 Score: 1840
Period size: 92 Copynumber: 15.0 Consensus size: 92
811730 CCTTTTCCAT
* * * * *
811740 CTTTAAGTCTAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
811805 GCTAGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
811832 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
811897 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
811924 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
811989 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
812016 TTTTAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
812081 GCTGGCCTTGAATCAGCATATTGGCACC
66 GCTGGCCTTGAATCAGCACATTGGCA-C
* * * * *
812109 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCA
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCA
* *
812174 ATATAGCTGGCCTTGAATCAGCATATTGGCACC
61 ATGTAGCTGGCCTTGAATCAGCACATTGGCA-C
* * *
812207 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGCCCA
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCA
* *
812266 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
61 ATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
812302 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCTAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
* *
812361 TCGCTGGCCTTGAATCAGCATATTGGCATCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* * *
812394 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-T-TTTAAGTCCAATC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
* *
812453 TCGCTGGCCTTGAATCAGCATATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
*
812486 ATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
*
812551 TAGCTGGCCTTGACTCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
*
812580 CTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCC
1 C-T-----TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
812645 AATGTAGCTGGCCTTGAATCAGCACATTGGCAC
60 AATGTAGCTGGCCTTGAATCAGCACATTGGCAC
*
812678 CTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
812743 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
812770 TTTTAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
812835 GCTGGCCTTGAATCAGTACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
812862 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
812927 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
812954 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAACGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
813019 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
813046 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAAT
*
813111 GTAGCTGGCCTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
813142 CTTT
1 CTTT
813146 TTCTCATCAT
Statistics
Matches: 1232, Mismatches: 56, Indels: 48
0.92 0.04 0.04
Matches are distributed among these distances:
92 917 0.74
93 2 0.00
94 4 0.00
95 43 0.03
96 5 0.00
97 2 0.00
98 259 0.21
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:812528 original size:423 final size:423
Alignment explanation
Indices: 811691--813092 Score: 2378
Period size: 423 Copynumber: 3.3 Consensus size: 423
811681 GCAACCCTTC
* * * * * *
811691 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCTAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CACCATTAAGTCCAATATA
* *
811756 GCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAG
63 GCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
* * *
811821 CACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTA
128 CACATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTA
811886 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGA
193 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGA
811951 ATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
258 ATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
812016 TTTTAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
323 TTTTAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATA
812081 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
388 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
812117 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
*
812182 GGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
812247 ATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
131 ATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
*
812312 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATCGCTGGCCTTGAATC
196 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATC
812377 AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTT
261 AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTT
812442 TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
326 TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
812507 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
391 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
812540 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
*
812605 GGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
812670 ATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
131 ATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
* *
812735 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCCAATCTCGCTGGCCTTGAATC
196 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATC
* *
812800 AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCACCTT
261 AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTT
* * *
812865 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
326 TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
*
812930 GGCCTTGAATCAGCACATTGGCA-C-----CTT
391 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * * **
812957 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAACGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
* *
813022 GGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
813081 ATTGGCACCTTT
131 ATTGGCACCTTT
813093 TCCATCTTTA
Statistics
Matches: 940, Mismatches: 36, Indels: 15
0.95 0.04 0.02
Matches are distributed among these distances:
411 45 0.05
416 1 0.00
417 81 0.09
422 1 0.00
423 773 0.82
424 2 0.00
426 37 0.04
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (423 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
ATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATC
AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTT
TAAGTCCAATCTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
GGCCTTGAATCAGCATATTGGCACCTTTATCTT
Found at i:813124 original size:52 final size:53
Alignment explanation
Indices: 813046--813199 Score: 184
Period size: 52 Copynumber: 2.9 Consensus size: 53
813036 ACATTGGCAC
813046 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * *
813098 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * * * *
813153 CATTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
813200 ATCACTTTTC
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
52 38 0.45
53 5 0.06
54 6 0.07
55 35 0.42
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:813257 original size:67 final size:68
Alignment explanation
Indices: 813149--813275 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
813139 ATCCTTTTTC
* * *
813149 TCATCATTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
813213 TCT
66 TCT
* * * *
813216 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAACATATTGGCACCTTCATCATCTTT
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
813276 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (68 bp):
TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:818645 original size:20 final size:20
Alignment explanation
Indices: 818620--818659 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
818610 TCTAGGCAGT
* *
818620 CACTTCTAGGTCGCAATCGG
1 CACTTCCAGGTCACAATCGG
818640 CACTTCCAGGTCACAATCGG
1 CACTTCCAGGTCACAATCGG
818660 GCAGCACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.23
Consensus pattern (20 bp):
CACTTCCAGGTCACAATCGG
Found at i:820671 original size:20 final size:20
Alignment explanation
Indices: 820627--820680 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
820617 AACCCTAGAA
820627 AGTATCGATACA-TATCCAG
1 AGTATCGATACATTATCCAG
*
820646 ATGTATCGATACATTATGCC-T
1 A-GTATCGATACATTAT-CCAG
820667 AGTATCGATACATT
1 AGTATCGATACATT
820681 GTATCAATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 1 0.03
20 24 0.77
21 4 0.13
22 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (20 bp):
AGTATCGATACATTATCCAG
Found at i:820701 original size:19 final size:19
Alignment explanation
Indices: 820677--820732 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
820667 AGTATCGATA
*
820677 CATTGTATCAATACATGCT
1 CATTGTATCGATACATGCT
*
820696 CATTGTATCGATACATACT
1 CATTGTATCGATACATGCT
820715 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
820733 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:820813 original size:33 final size:33
Alignment explanation
Indices: 820763--820840 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
820753 AAGTGAAATA
* *
820763 TATCGATTCATGGGACATTATATCGATACATTG
1 TATCGATACATGGGACATTATATCAATACATTG
* *
820796 TATTGATACATGGGACATTGTATCAATACATTG
1 TATCGATACATGGGACATTATATCAATACATTG
820829 TATCGATACATG
1 TATCGATACATG
820841 AAGTATTGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (33 bp):
TATCGATACATGGGACATTATATCAATACATTG
Found at i:820828 original size:13 final size:13
Alignment explanation
Indices: 820810--820839 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
820800 GATACATGGG
820810 ACATTGTATCAAT
1 ACATTGTATCAAT
*
820823 ACATTGTATCGAT
1 ACATTGTATCAAT
820836 ACAT
1 ACAT
820840 GAAGTATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
ACATTGTATCAAT
Found at i:820849 original size:33 final size:33
Alignment explanation
Indices: 820763--820860 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
820753 AAGTGAAATA
* * *
820763 TATCGATTCATGGGACATTATATCGATACATTG
1 TATCGATACATGAGACATTGTATCGATACATTG
* * *
820796 TATTGATACATGGGACATTGTATCAATACATTG
1 TATCGATACATGAGACATTGTATCGATACATTG
*
820829 TATCGATACATGA-AGTATTGTATCGATACATT
1 TATCGATACATGAGA-CATTGTATCGATACATT
820861 ATGCCCAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 1 0.02
33 55 0.98
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (33 bp):
TATCGATACATGAGACATTGTATCGATACATTG
Found at i:820907 original size:52 final size:52
Alignment explanation
Indices: 820847--820966 Score: 231
Period size: 52 Copynumber: 2.3 Consensus size: 52
820837 CATGAAGTAT
*
820847 TGTATCGATACATTATGCCCAATAGCTATAAACGGCTTTAATTTCAAATGCA
1 TGTATCGATACATTATGCCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
820899 TGTATCGATACATTATGCCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
1 TGTATCGATACATTATGCCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
820951 TGTATCGATACATTAT
1 TGTATCGATACATTAT
820967 AAATTGTATC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.33
Consensus pattern (52 bp):
TGTATCGATACATTATGCCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
Found at i:823765 original size:23 final size:23
Alignment explanation
Indices: 823737--823782 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
823727 TTAATGAACA
*
823737 ATTGACATGTGGCACCACATAAT
1 ATTGACACGTGGCACCACATAAT
* *
823760 ATTGACACGTGGCATCACCTAAT
1 ATTGACACGTGGCACCACATAAT
823783 GCTAACATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (23 bp):
ATTGACACGTGGCACCACATAAT
Found at i:824210 original size:18 final size:17
Alignment explanation
Indices: 824155--824215 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 17
824145 ATATGAATAC
824155 ATAAAT-TAAAATTTAT
1 ATAAATATAAAATTTAT
824171 AT-AATAT-AAA-TTAT
1 ATAAATATAAAATTTAT
824185 A-AACATATCAAAATTTAT
1 ATAA-ATAT-AAAATTTAT
824203 ATAAATATAAAAT
1 ATAAATATAAAAT
824216 ATCTTAAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
14 6 0.16
15 10 0.26
16 3 0.08
17 8 0.21
18 9 0.24
19 2 0.05
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAAATATAAAATTTAT
Found at i:825668 original size:26 final size:26
Alignment explanation
Indices: 825632--825681 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
825622 AAAATGCAAT
825632 AAAAATCAAAATATGACTTTTTAATA
1 AAAAATCAAAATATGACTTTTTAATA
* * *
825658 AAAAATTAAAATTTGATTTTTTAA
1 AAAAATCAAAATATGACTTTTTAA
825682 AATACAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (26 bp):
AAAAATCAAAATATGACTTTTTAATA
Found at i:825713 original size:21 final size:22
Alignment explanation
Indices: 825687--825741 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
825677 TTTAAAATAC
* *
825687 AAAAAATAAGATTTTG-TTTTT
1 AAAAAATAAAATTTAGATTTTT
825708 AAAAAATAAAATTTAGATTTTT
1 AAAAAATAAAATTTAGATTTTT
825730 AAAAAATAAAAT
1 AAAAAATAAAAT
825742 CTAAAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 14 0.45
22 17 0.55
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (22 bp):
AAAAAATAAAATTTAGATTTTT
Found at i:825749 original size:16 final size:16
Alignment explanation
Indices: 825730--825763 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
825720 TTAGATTTTT
825730 AAAAAATAAAATCTAA
1 AAAAAATAAAATCTAA
* *
825746 AAAAATTAAAATTTAA
1 AAAAAATAAAATCTAA
825762 AA
1 AA
825764 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAAATAAAATCTAA
Found at i:825754 original size:23 final size:23
Alignment explanation
Indices: 825728--825782 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
825718 ATTTAGATTT
825728 TTAAAAAATAAAATCTAAAAAAA
1 TTAAAAAATAAAATCTAAAAAAA
** *
825751 TTAAAATTTAAAATTTAAAAAAA
1 TTAAAAAATAAAATCTAAAAAAA
825774 -TAAATAAAT
1 TTAAA-AAAT
825783 TCTCTAGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
TTAAAAAATAAAATCTAAAAAAA
Found at i:831284 original size:18 final size:18
Alignment explanation
Indices: 831261--831295 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
831251 AATATATCAA
831261 ATAATT-TTTATTATTTAT
1 ATAATTATTTATT-TTTAT
831279 ATAATTATTTATTTTTA
1 ATAATTATTTATTTTTA
831296 ATTAACTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
ATAATTATTTATTTTTAT
Found at i:835417 original size:22 final size:21
Alignment explanation
Indices: 835392--835449 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
835382 TTTTGTTTTC
*
835392 AAAAAATAAAATTTTAATATTA
1 AAAAAATAAAATTCT-ATATTA
*
835414 AAAAAAGTAAAA-TCTATATTT
1 AAAAAA-TAAAATTCTATATTA
*
835435 AAAAAATTAAATTCT
1 AAAAAATAAAATTCT
835450 CTATAACAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.13
21 14 0.45
22 8 0.26
23 5 0.16
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (21 bp):
AAAAAATAAAATTCTATATTA
Found at i:836526 original size:19 final size:19
Alignment explanation
Indices: 836470--836526 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 19
836460 AATTAAAATC
836470 TATATAAT-ATTAACATG-A
1 TATATAATCA-TAACATGAA
* *
836488 T-TATGA-CATAACA-AAA
1 TATATAATCATAACATGAA
836504 TATATAATCATAACATGAA
1 TATATAATCATAACATGAA
836523 TATA
1 TATA
836527 CAAATTGTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 9
0.70 0.09 0.21
Matches are distributed among these distances:
16 7 0.23
17 9 0.30
18 8 0.27
19 6 0.20
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (19 bp):
TATATAATCATAACATGAA
Found at i:838601 original size:50 final size:50
Alignment explanation
Indices: 838542--838658 Score: 144
Period size: 52 Copynumber: 2.3 Consensus size: 50
838532 ATAAAGCCAA
* * *
838542 GGTTAGAGTATCCCCTCGGAGGAAAATTGGTGTTTTAAAAATAAAACCGG
1 GGTTGGAGTATCCCCTCGGAGAAAAATTAGTGTTTTAAAAATAAAACCGG
* * * **
838592 GGTTGGAGTATTCCCGATTGTAGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTA-TCCC-CTCGGAGAAAAATTAGTGTTTTAAAAATAAAACCGG
838644 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
838659 GATTATGAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 9 0.16
51 8 0.14
52 39 0.70
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (50 bp):
GGTTGGAGTATCCCCTCGGAGAAAAATTAGTGTTTTAAAAATAAAACCGG
Found at i:838628 original size:52 final size:51
Alignment explanation
Indices: 838564--838709 Score: 166
Period size: 52 Copynumber: 2.8 Consensus size: 51
838554 CCCTCGGAGG
* * *
838564 AAAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTATTCCCGATTGTAGA
1 AAAATTAGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCCCGATTAT-GA
**
838616 AAAATTAGTGTTTTAGCAATAAAACCGGGGTTGGAGTATCCCCGATTATGA
1 AAAATTAGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGA
* * * ** ** *
838667 AAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAATATCCCC
1 AAAATTAGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCCC
838710 TCGGAAATAA
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
51 37 0.46
52 44 0.54
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAATTAGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGA
Found at i:838696 original size:51 final size:52
Alignment explanation
Indices: 838574--838709 Score: 166
Period size: 51 Copynumber: 2.6 Consensus size: 52
838564 AAAATTGGTG
* * * * * *
838574 TTTTAAAAATAAAACCGGGGTTGGAGTATTCCCGATTGTAGAAAAATTAGTG
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATTATAGAAAAATCAATA
*
838626 TTTTAGCAATAAAACCGGGGTTGGAGTATCCCCGATTAT-GAAAAATCAATA
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATTATAGAAAAATCAATA
* ** *
838677 TTTTGGAAATAAAGTCGGGGTTGGAATATCCCC
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
838710 TCGGAAATAA
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
51 37 0.51
52 35 0.49
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (52 bp):
TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGATTATAGAAAAATCAATA
Found at i:841222 original size:13 final size:13
Alignment explanation
Indices: 841204--841229 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
841194 ACAAAGATCC
841204 ATGTATCGATACA
1 ATGTATCGATACA
841217 ATGTATCGATACA
1 ATGTATCGATACA
841230 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:841225 original size:33 final size:33
Alignment explanation
Indices: 841183--841249 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
841173 AAAATTTCCA
***
841183 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
841216 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
841249 A
1 A
841250 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:841309 original size:13 final size:13
Alignment explanation
Indices: 841291--841315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
841281 ACATTACTTA
841291 TGTATCGATACAT
1 TGTATCGATACAT
841304 TGTATCGATACA
1 TGTATCGATACA
841316 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:841313 original size:32 final size:32
Alignment explanation
Indices: 841272--841334 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
841262 TAGCAAATTA
**
841272 TGTATCGATACATTACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
841304 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
841335 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:841328 original size:19 final size:19
Alignment explanation
Indices: 841269--841336 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
841259 CAATAGCAAA
**
841269 TTATGTATCGATACATTAC
1 TTATGTATCGATACAAAAC
841288 TTATGTATCGATAC---A-
1 TTATGTATCGATACAAAAC
841303 -T-TGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
841320 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
841337 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 1 0.02
19 28 0.65
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:841398 original size:21 final size:22
Alignment explanation
Indices: 841372--841428 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
841362 GTTGGGACCC
** *
841372 TGTATCGATACATTTTTA-GAA
1 TGTATCGATACATTTCCACAAA
841393 TGTATCGATACA-TTCCACAAA
1 TGTATCGATACATTTCCACAAA
841414 TGTATCGATACATTT
1 TGTATCGATACATTT
841429 GAATTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.10
21 26 0.84
22 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (22 bp):
TGTATCGATACATTTCCACAAA
Found at i:842137 original size:24 final size:24
Alignment explanation
Indices: 842095--842145 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
842085 AAATGCAATG
842095 AAAATCAAAATATGAATTTTTTATA
1 AAAATCAAAATATGAATTTTTT-TA
* *
842120 AAAATTAAAATTTG-ATTTTTTTA
1 AAAATCAAAATATGAATTTTTTTA
842143 AAA
1 AAA
842146 TACAAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.21
24 7 0.29
25 12 0.50
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (24 bp):
AAAATCAAAATATGAATTTTTTTA
Found at i:842153 original size:30 final size:30
Alignment explanation
Indices: 842119--842177 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
842109 AATTTTTTAT
* *
842119 AAAAATTAA-AATTTGATTTTTTTAAAATAC
1 AAAAACTAAGAATTTG-TTTTTTAAAAATAC
*
842149 AAAAACTAAGATTTTGTTTTTTAAAAATA
1 AAAAACTAAGAATTTGTTTTTTAAAAATA
842178 AAATTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.42
Consensus pattern (30 bp):
AAAAACTAAGAATTTGTTTTTTAAAAATAC
Found at i:842212 original size:21 final size:21
Alignment explanation
Indices: 842171--842244 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
842161 TTTGTTTTTT
* *
842171 AAAAATAAAATTTATATTTTA
1 AAAAATAAAATCTATAATTTA
842192 AAAAAGTAAAATCTA-AATTTA
1 AAAAA-TAAAATCTATAATTTA
* * * *
842213 AAAATATTAAATTTTTAAATTAA
1 AAAA-ATAAAATCTAT-AATTTA
842236 AAAAATAAA
1 AAAAATAAA
842245 TTCTCTACAA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
21 20 0.48
22 13 0.31
23 9 0.21
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (21 bp):
AAAAATAAAATCTATAATTTA
Found at i:843777 original size:25 final size:25
Alignment explanation
Indices: 843740--843800 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
843730 TAATTTGGAC
*
843740 TTAAATTACAATTT-ATAAATAAAATT
1 TTAATTTA-AATTTAAT-AATAAAATT
* *
843766 TTTATTTAAATTTAATCATAAAATT
1 TTAATTTAAATTTAATAATAAAATT
843791 TTAATTTAAA
1 TTAATTTAAA
843801 AATATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 22 0.73
26 8 0.27
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (25 bp):
TTAATTTAAATTTAATAATAAAATT
Found at i:844911 original size:2 final size:2
Alignment explanation
Indices: 844904--844938 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
844894 TAGATTTATT
844904 TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
844939 ACACAAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:846270 original size:43 final size:43
Alignment explanation
Indices: 846211--846313 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
846201 CTTATATACA
846211 AAAAGAAAGAATAGATAAAATCAAATCGTCAAGTCTATGAAAC
1 AAAAGAAAGAATAGATAAAATCAAATCGTCAAGTCTATGAAAC
* * * *
846254 AAAAGAAAGAATAGATAAAGTCAGATCGTCAAGTCTGTGAAAT
1 AAAAGAAAGAATAGATAAAATCAAATCGTCAAGTCTATGAAAC
846297 AAATA-AAAGAATAGATA
1 AAA-AGAAAGAATAGATA
846314 CGAAATAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 54 0.98
44 1 0.02
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (43 bp):
AAAAGAAAGAATAGATAAAATCAAATCGTCAAGTCTATGAAAC
Found at i:846513 original size:17 final size:17
Alignment explanation
Indices: 846487--846521 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
846477 TAATATAACT
846487 ATTAACAGACAGGTGCA
1 ATTAACAGACAGGTGCA
*
846504 ATTAAGAGACAGGTGCA
1 ATTAACAGACAGGTGCA
846521 A
1 A
846522 CAATTTCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.26, T:0.17
Consensus pattern (17 bp):
ATTAACAGACAGGTGCA
Found at i:857549 original size:34 final size:34
Alignment explanation
Indices: 857506--857573 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
857496 ATGCTAAACT
857506 GGTTAGAGCAAGTAAGAACACTTTTTGAGGTTAA
1 GGTTAGAGCAAGTAAGAACACTTTTTGAGGTTAA
857540 GGTTAGAGCAAGTAAGAACACTTTTTGAGGTTAA
1 GGTTAGAGCAAGTAAGAACACTTTTTGAGGTTAA
857574 TCTTCATCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (34 bp):
GGTTAGAGCAAGTAAGAACACTTTTTGAGGTTAA
Found at i:865358 original size:27 final size:27
Alignment explanation
Indices: 865318--865391 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
865308 TTTGGTTGAA
* *
865318 AATGGAGTTGGAGTGTCCCCTCGGAGG
1 AATGGGGTTAGAGTGTCCCCTCGGAGG
865345 AATGGGGTTAGAGTGTCCCCTCGGAGG
1 AATGGGGTTAGAGTGTCCCCTCGGAGG
*
865372 AATGGGGTTTGAGTGTCCCC
1 AATGGGGTTAGAGTGTCCCC
865392 GATGAATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.18, C:0.19, G:0.39, T:0.24
Consensus pattern (27 bp):
AATGGGGTTAGAGTGTCCCCTCGGAGG
Found at i:868605 original size:35 final size:35
Alignment explanation
Indices: 868557--868628 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
868547 AATGAAAGAA
* *
868557 TTAGGTTTTATGGATGTTATGTTAGAAATCAAGTT
1 TTAGGTGTCATGGATGTTATGTTAGAAATCAAGTT
868592 TTAGGTGTCATGGATGTTATGTTAGAAATCAAGTT
1 TTAGGTGTCATGGATGTTATGTTAGAAATCAAGTT
868627 TT
1 TT
868629 TTAGGACACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.04, G:0.24, T:0.44
Consensus pattern (35 bp):
TTAGGTGTCATGGATGTTATGTTAGAAATCAAGTT
Found at i:870036 original size:21 final size:21
Alignment explanation
Indices: 870010--870049 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
870000 AAAGGTATAT
870010 TTGGATGAAATGA-TGCATTGG
1 TTGGATGAAA-GATTGCATTGG
870031 TTGGATGAAAGATTGCATT
1 TTGGATGAAAGATTGCATT
870050 TTTTGGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (21 bp):
TTGGATGAAAGATTGCATTGG
Found at i:870055 original size:21 final size:21
Alignment explanation
Indices: 870009--870061 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
869999 AAAAGGTATA
870009 TTTGGATGAAATGATGCATTG
1 TTTGGATGAAATGATGCATTG
* *
870030 GTTGGATGAAA-GATTGCATTT
1 TTTGGATGAAATGA-TGCATTG
*
870051 TTTGGGTGAAA
1 TTTGGATGAAA
870062 AAATATTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.28, C:0.04, G:0.30, T:0.38
Consensus pattern (21 bp):
TTTGGATGAAATGATGCATTG
Found at i:874633 original size:155 final size:155
Alignment explanation
Indices: 874379--875093 Score: 599
Period size: 156 Copynumber: 4.6 Consensus size: 155
874369 CTAAGTTTAA
** * * * * *
874379 AAAAATTACAAAAATGCCCCTAGGGGATACCTTCGAGGTAGAAGTACCCGA-TAACCTTAAAGGA
1 AAAAATTACAAAAATGCCTTTAGGGGATACCTTCGACGTAAAAGTATCCTAGTAACCCTAAAGGA
* * *
874443 CTTAAAAAGGATAGAAATGCGATGGACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGA-TC
66 CTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCGGACTC
* *
874507 TGGTGATAACCTAGGACTTAGTTCTG
131 -GGTGACAACCTAGGACTTGGTTCTG
** * * *
874533 AAAAATTATGAAAATGCCTTTAGGGGATACTTTCGACATAAAAGTATCCTAGTAACCCCAAAGGA
1 AAAAATTACAAAAATGCCTTTAGGGGATACCTTCGACGTAAAAGTATCCTAGTAACCCTAAAGGA
* * * *
874598 CTTAAAAATGATAGAAATAGGATGAACCTATCCTAAATGCCCACCGTT-GGCATAAAAGCAGAC-
66 CTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATGCCCACC-TTCAGCATAAAAGCGGACT
* * * * *
874661 CGGTGACGACCAAAGAGTTGGTTTTG
130 CGGTGACAACCTAGGACTTGGTTCTG
* * * * * *
874687 -AAAATCACAAAAATACCTTTACGGGTATACCTTCGATGTAAAAGTAT-CTCGGTAGCCCTAAAG
1 AAAAATTACAAAAATGCCTTTA-GGGGATACCTTCGACGTAAAAGTATCCT-AGTAACCCTAAAG
* * * *
874750 GACTT-AAAACGACTCATAAAAGGGATGAACCTATCCTAAATGACCACCTTCAGCATAAAATG-G
64 GACTTAAAAAGGA-T-AGAAATGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAAAA-GCG
* *
874813 GACTCGGTGACGACCTAGGAGTTGGTTCT-
126 GACTCGGTGACAACCTAGGACTTGGTTCTG
* * ** * * * *
874842 CAAAATTATGAAAATACCCCTTT-GGGTATACCTTCGACGTATAAGTATCTCAAGTAATCCTAAA
1 AAAAATTA-CAAAA-ATGCCTTTAGGGGATACCTTCGACGTAAAAGTATC-CTAGTAACCCTAAA
* * * * * *
874906 GGACTTAAAAAGGATATAGATGGGATGAACCTATCCTAAATACCCACGTTTAGCATAAAACCGGA
63 GGACTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCGGA
* * * * *
874971 CTCGGTGATAACTTAGGACTCGATTCTAA
128 CTCGGTGACAACCTAGGACTTGGTTCT-G
* ** ** * * * *
875000 ATAAAATTAGAAAAATGCCCCTAGGGGATACCTTTAACGTAGAAA-TACCCGA-CAACCCTAAAA
1 A-AAAATTACAAAAATGCCTTTAGGGGATACCTTCGACGTA-AAAGTATCCTAGTAACCCTAAAG
* * * *
875063 GACTTAAAAATGATATAGATGGGATGGACCT
64 GACTTAAAAAGGATAGAAATGGGATGAACCT
875094 TTTGGCATAA
Statistics
Matches: 454, Mismatches: 85, Indels: 42
0.78 0.15 0.07
Matches are distributed among these distances:
153 25 0.06
154 98 0.22
155 106 0.23
156 154 0.34
157 26 0.06
158 36 0.08
159 9 0.02
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (155 bp):
AAAAATTACAAAAATGCCTTTAGGGGATACCTTCGACGTAAAAGTATCCTAGTAACCCTAAAGGA
CTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCGGACTC
GGTGACAACCTAGGACTTGGTTCTG
Found at i:874988 original size:156 final size:155
Alignment explanation
Indices: 874379--875873 Score: 899
Period size: 155 Copynumber: 9.7 Consensus size: 155
874369 CTAAGTTTAA
** * * * * * * * *
874379 AAAAATTACAAAAATGCCCC-TAGGGGATACCTTCGAGGTAGAAGTA-CCCGATAACCTTAAAGG
1 AAAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAAGG
* * * **
874442 ACTTAAAAAGGATAGAAATGCGATGGACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGA-T
66 ACTTAAAAAGGATATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCGGACT
* *
874506 CTGGTGATAACCTAGGACTTAGTTCT
131 C-GGTGATAACCTAGGAGTTGGTTCT
* * * * * *
874532 GAAAAATTATGAAAAT--GCCTTTAGGGGATACTTTCGACATAAAAGTATC-CTAGTAACCCCAA
1 -AAAAATTATGAAAATACCCCTTT-GGGTATACCTTCGACGTAAAAGTATCTC-AATAACCCTAA
* * * * * *
874594 AGGACTTAAAAATGATAGAAATAGGATGAACCTATCCTAAATGCCCACCGTTGGCATAAAAGCAG
63 AGGACTTAAAAAGGATATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCGG
** * * *
874659 AC-CGGTGACGACCAAAGAGTTGGTTTT
128 ACTCGGTGATAACCTAGGAGTTGGTTCT
* * ** * ** *
874686 GAAAATCACAAAAATA--CCTTTACGGGTATACCTTCGATGTAAAAGTATCTCGGTAGCCCTAAA
1 AAAAATTATGAAAATACCCCTTT--GGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAA
* * * *
874749 GGACTT-AAAACGACTCATAAAAGGGATGAACCTATCCTAAATGACCACCTTCAGCATAAAATG-
64 GGACTTAAAAAGGA-T-ATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAA-GC
**
874812 GGACTCGGTGACGACCTAGGAGTTGGTTCT
126 GGACTCGGTGATAACCTAGGAGTTGGTTCT
* * *
874842 CAAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTATAAGTATCTCAAGTAATCCTAAAG
1 AAAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTAAAAGTATCTCAA-TAACCCTAAAG
* * * *
874907 GACTTAAAAAGGATATAGATGGGATGAACCTATCCTAAATACCCACGTTTAGCATAAAACCGGAC
65 GACTTAAAAAGGATATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCGGAC
* * * *
874972 TCGGTGATAACTTAGGACTCGATTCT
130 TCGGTGATAACCTAGGAGTTGGTTCT
* * * ** * * *
874998 AAATAAAATTA-GAAAAATGCCCC-TAGGGGATACCTTTAACGTAGAAA-TA-CCCGACAACCCT
1 --A-AAAATTATG-AAAATACCCCTTTGGGTATACCTTCGACGTA-AAAGTATCTCAATAACCCT
* * * * * * * ** *
875059 AAAAGACTTAAAAATGATATAGATGGGATGGACCTTTTGGCATAAAAGCGAACC--CAG--T---
61 AAAGGACTTAAAAAGGATATAAATGGGATGAACC-TAT--CCTAAATGCCCACCTTTAGCATAAA
** * * * *
875117 -GATGAC-C--T-A-AGA-GT-TG-GTT--CT-A
123 AGCGGACTCGGTGATA-ACCTAGGAGTTGGTTCT
* * * * * * * * *
875139 GAAAATTACGAAAATGCCTCTATGAGTATACCTTCGATGT-AAAGTATCCCGATAACCCTAAAGG
1 AAAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAAGG
* * * *
875203 ACTTAAAAAGGACTTTAACTGGGATGAACCTATCCTAAATGCCCACC-TTCGACATAAAGGCGGA
66 ACTTAAAAAGGA-TATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAG-CATAAAAGCGGA
** *
875267 C-CTGGTGACGACCTAGGAGTTAGTTCT
129 CTC-GGTGATAACCTAGGAGTTGGTTCT
* * ****
875294 AAAAATTA-CAAAAGTA-CCCTTATAGGTATACCTTCGACGTAAAAGTATCTTGGCAA-CCTAAA
1 AAAAATTATGAAAA-TACCCCTT-TGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAA
* * * * * *
875356 GGACTT-AAAACGACTCATAAAGGGGATAAACCTATCCTAAATGCCCACTTTTGGCATAAAAGCA
64 GGACTTAAAAAGGA-T-ATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCG
*
875420 GACTCGGTGATGACCTAGGAGTTGGTTCT
127 GACTCGGTGATAACCTAGGAGTTGGTTCT
* * * ** * * *
875449 TAAAATTATGAAAATGCCTCTAGGGGTATACTTTCAACGTAAAAGTATC-CTAA-CACCCTAAAG
1 AAAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTAAAAGTATCTC-AATAACCCTAAAG
* * * * *
875512 GACTTAAAAAAGATATAGATGGGATGAACCTATCCTAAATACCCACCTTAAGCATAAAAACGGAC
65 GACTTAAAAAGGATATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCGGAC
* * * *
875577 TCAGTGATAACCTAGGACTCGATTCT
130 TCGGTGATAACCTAGGAGTTGGTTCT
* * * * * * *
875603 AAACAAAATTATGAAAATACCCCATAGAGG-ATACCTTTGACGTAGAAGTACCT-AACAACCCCA
1 --A-AAAATTATGAAAATACCCCTTTG-GGTATACCTTCGACGTAAAAGTATCTCAATAACCCTA
* * **
875666 AAGGACTTAAAAAGGATATAGATGGGATGAACCTATCGTAAATGCCCACCTTCGGCAT-AAAGCG
62 AAGGACTTAAAAAGGATATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCG
* ** * * *
875730 GACCCAATGATGACCTAGGAGTT-ATTTT
127 GACTCGGTGATAACCTAGGAGTTGGTTCT
* * * *** * * *
875758 AGAAAATTACGAAAATGCCTCTACAGGTATACCTTTGACGTAAAAGTATCTCGACAACCCTAAAG
1 A-AAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAAG
* * * * * *
875823 GACTTAAAAAAGATTTTAACTGGGATAAATCC-ACCCTAAATACCCACCTTT
65 GACTTAAAAAGGA-TATAAATGGGATGAA-CCTATCCTAAATGCCCACCTTT
875874 GACACTGAAG
Statistics
Matches: 1038, Mismatches: 232, Indels: 141
0.74 0.16 0.10
Matches are distributed among these distances:
137 13 0.01
138 19 0.02
139 41 0.04
140 13 0.01
141 1 0.00
142 1 0.00
144 1 0.00
145 6 0.01
146 2 0.00
147 2 0.00
148 2 0.00
149 2 0.00
150 2 0.00
151 4 0.00
152 7 0.01
153 61 0.06
154 192 0.18
155 281 0.27
156 215 0.21
157 115 0.11
158 32 0.03
159 26 0.03
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (155 bp):
AAAAATTATGAAAATACCCCTTTGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAAGG
ACTTAAAAAGGATATAAATGGGATGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCGGACT
CGGTGATAACCTAGGAGTTGGTTCT
Found at i:876564 original size:126 final size:128
Alignment explanation
Indices: 876427--876661 Score: 325
Period size: 126 Copynumber: 1.8 Consensus size: 128
876417 TCAAAAAGTG
* * *
876427 TCATTTCGTACCTTGATGGAAAC-CCACCAAGATACGAAAA-ATTTGAAATCTTTTAATACCCCA
1 TCATTTCGTACCTTAATGGAAACTCCA-AAAGATACGAAAAGATTTGAAATCTTTT-ATACCACA
876490 ACGGATACCCAT-AGAATATAAAAGA-TTAAAAATGATTAATATTTATTTATTTTTGGAAAAAAA
64 ACGGATACCCATAAGAATATAAAAGATTTAAAAATGATTAATATTTATTTATTTTTGGAAAAAAA
* ** * **
876553 TCATTTCGTACCTTAATGGATACTTGAAAAGATACGAAAAGTTTTTGAAATCTTTTATACCATTA
1 TCATTTCGTACCTTAATGGAAACTCCAAAAGATACGAAAAG-ATTTGAAATCTTTTATACCACAA
*
876618 CGGATACCCATAAGTATATAAAAGATTTAAAAATGATTAATATT
65 CGGATACCCATAAGAATATAAAAGATTTAAAAATGATTAATATT
876662 AAAATATATT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
126 33 0.35
127 18 0.19
128 25 0.27
129 18 0.19
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (128 bp):
TCATTTCGTACCTTAATGGAAACTCCAAAAGATACGAAAAGATTTGAAATCTTTTATACCACAAC
GGATACCCATAAGAATATAAAAGATTTAAAAATGATTAATATTTATTTATTTTTGGAAAAAAA
Found at i:877864 original size:18 final size:19
Alignment explanation
Indices: 877833--877881 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
877823 CGATATATAC
* *
877833 AAAA-AAATAAAAATTTAA
1 AAAATAAATTAAATTTTAA
*
877851 AAAATAAATTAAATTTTCA
1 AAAATAAATTAAATTTTAA
*
877870 AAACTAAATTAA
1 AAAATAAATTAA
877882 TGGGAGTTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATAAATTAAATTTTAA
Found at i:878101 original size:166 final size:165
Alignment explanation
Indices: 877929--878468 Score: 619
Period size: 166 Copynumber: 3.3 Consensus size: 165
877919 TTTTAGACAG
*
877929 AGAAAAATCCCCCTAAAAAAATTTACGGAGAAGAAAATATCATATTTCAGAAAAAGGAAAATTTC
1 AGAAAAAT-CCCCTAAAAAAATTTACGGAGAAGAAAATATCGTATTTCAGAAAAAGGAAAATTTC
* * * *
877994 AAGGAAAAAATCCAAAACTCATGAAAATGAATTTATTTTTTAAAACTGAAATAATATGAAATAAA
65 AAGGAAAAAATCAAAAACTCATGAAAATGAATTTATTTTTAAAAAATGAAATAAAATGAAATAAA
* *
878059 TAATGATGTTTGATGAATTTTAAAAATTGAAACCCA
130 TAATAATGTTTGATGAATTTTAAAAATTGAAAACCA
** * * ** * *
878095 AGAAAAATCCCGAAGAAAAAATTTACAGAGTAGAAAACGTCGTATTTTAAAAAAAAAGG-AAATT
1 AGAAAAATCCCCTA-AAAAAATTTACGGAGAAGAAAATATCGTA-TTT-CAGAAAAAGGAAAATT
* * * * *
878159 TCAAGGAAAAAATAAAAAACTAATGAAAATG-A-TT-TTTTTAAAAATTGAATTAACATGAAATA
63 TCAAGGAAAAAATCAAAAACTCATGAAAATGAATTTATTTTTAAAAAATGAAATAAAATGAAATA
* *
878221 AATAATAATGTTTAATGAATTTTAAAAATTGAAAAGC-
128 AATAATAATGTTTGATGAATTTTAAAAATTGAAAACCA
* * * *
878258 AGAAAAATCCCCTCGAAAAAATTTACGAAGTAGAAAATACCGTATTTCAGAAAAA-GAAGAATTT
1 AGAAAAATCCCCT-AAAAAAATTTACGGAGAAGAAAATATCGTATTTCAGAAAAAGGAA-AATTT
* ** *
878322 CAAGAAAAAAATTCAAAAACTCATGAAAATGAATGAATTTTTAAAAAAT-AAATTAAAATAAAAT
64 CAAGGAAAAAA-TCAAAAACTCATGAAAATGAATTTATTTTTAAAAAATGAAA-TAAAATGAAAT
* **
878386 AAATAATAATATTTGATGAATTTTAAAAATT-AAATATTA
127 AAATAATAATGTTTGATGAATTTTAAAAATTGAAA-ACCA
* *
878425 AGAAAAATCCTCCTAAAAAAATTTACGGATAAGAAAATCTCGTA
1 AGAAAAATCC-CCTAAAAAAATTTACGGAGAAGAAAATATCGTA
878469 ATTTGAAAAT
Statistics
Matches: 311, Mismatches: 49, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
160 1 0.00
161 7 0.02
162 18 0.06
163 52 0.17
164 58 0.19
165 11 0.04
166 83 0.27
167 70 0.23
168 11 0.04
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.27
Consensus pattern (165 bp):
AGAAAAATCCCCTAAAAAAATTTACGGAGAAGAAAATATCGTATTTCAGAAAAAGGAAAATTTCA
AGGAAAAAATCAAAAACTCATGAAAATGAATTTATTTTTAAAAAATGAAATAAAATGAAATAAAT
AATAATGTTTGATGAATTTTAAAAATTGAAAACCA
Found at i:881457 original size:19 final size:20
Alignment explanation
Indices: 881433--881484 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
881423 ACATTTGTTC
*
881433 ATGTATCGATACAATGAAT-
1 ATGTATCGATACAAAGAATA
*
881452 ATGTATCGATACAAAGCATA
1 ATGTATCGATACAAAGAATA
881472 ATGTATCGATACA
1 ATGTATCGATACA
881485 TCTAAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACAAAGAATA
Found at i:882429 original size:33 final size:33
Alignment explanation
Indices: 882392--882458 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
882382 AAAAGAACTA
* *
882392 AAGTGCTCATCCATGCACTGCGAGAGTGAAGTG
1 AAGTGCTCATCCATGCACTGCAAAAGTGAAGTG
* **
882425 AAGTGCTCATTCATGTGCTGCAAAAGTGAAGTG
1 AAGTGCTCATCCATGCACTGCAAAAGTGAAGTG
882458 A
1 A
882459 TCAACTCTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (33 bp):
AAGTGCTCATCCATGCACTGCAAAAGTGAAGTG
Found at i:885732 original size:34 final size:35
Alignment explanation
Indices: 885694--885760 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
885684 CCTTACAACA
885694 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
885728 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
885761 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:886241 original size:20 final size:21
Alignment explanation
Indices: 886216--886255 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
886206 GTGTGAACAG
886216 TGATGTATCGATACA-ATTTT
1 TGATGTATCGATACATATTTT
886236 TGATGTATCGATACATATTT
1 TGATGTATCGATACATATTT
886256 GAAAATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (21 bp):
TGATGTATCGATACATATTTT
Found at i:886241 original size:91 final size:91
Alignment explanation
Indices: 886127--886341 Score: 412
Period size: 91 Copynumber: 2.4 Consensus size: 91
886117 TCCCGTGTAA
886127 ATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAG
1 ATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAG
886192 GCTTTGATTAAATGGTGTGAACAGTG
66 GCTTTGATTAAATGGTGTGAACAGTG
886218 ATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAG
1 ATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAG
886283 GCTTTGATTAAATGGTGTGAACAGTG
66 GCTTTGATTAAATGGTGTGAACAGTG
* *
886309 ATGTATCGATACTATTTATGATGTATCGATACA
1 ATGTATCGATACAATTTTTGATGTATCGATACA
886342 CTGTATCGAT
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 122 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (91 bp):
ATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGCCGTTAG
GCTTTGATTAAATGGTGTGAACAGTG
Found at i:886348 original size:13 final size:13
Alignment explanation
Indices: 886330--886355 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
886320 CTATTTATGA
886330 TGTATCGATACAC
1 TGTATCGATACAC
886343 TGTATCGATACAC
1 TGTATCGATACAC
886356 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:886427 original size:10 final size:10
Alignment explanation
Indices: 886408--886438 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
886398 TTAACGATAC
886408 ATGAACAGTG
1 ATGAACAGTG
*
886418 ATGAATAGTG
1 ATGAACAGTG
886428 ATGAACAGTG
1 ATGAACAGTG
886438 A
1 A
886439 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:886578 original size:20 final size:20
Alignment explanation
Indices: 886515--886585 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
886505 GCCAATGACC
**
886515 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
886535 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
886555 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
886575 TGTATCGATAC
1 TGTATCGATAC
886586 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:886651 original size:21 final size:21
Alignment explanation
Indices: 886625--886665 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
886615 GTCAACCTTG
886625 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
886646 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
886666 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:890368 original size:13 final size:13
Alignment explanation
Indices: 890350--890375 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
890340 ATAATCCCCC
890350 TGTATCGATACAA
1 TGTATCGATACAA
890363 TGTATCGATACAA
1 TGTATCGATACAA
890376 AGAATGATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:894320 original size:21 final size:21
Alignment explanation
Indices: 894291--894335 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
894281 AAGTTTTTAT
*
894291 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
894311 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
894333 TTT
1 TTT
894336 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:894335 original size:22 final size:21
Alignment explanation
Indices: 894280--894335 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
894270 ATGAATCATG
894280 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
894301 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
894322 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
894336 CAACTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:896585 original size:13 final size:13
Alignment explanation
Indices: 896567--896591 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
896557 CATTTTATGG
896567 TGTATCGATACAA
1 TGTATCGATACAA
896580 TGTATCGATACA
1 TGTATCGATACA
896592 TACTTTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:896607 original size:32 final size:33
Alignment explanation
Indices: 896544--896611 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
896534 CATTACAAGC
*
896544 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATCTTATGGTGTATCGATA
896577 CAATGTATCGATACATACTT-T-GTGTATCGATA
1 CAATGTATCGATACAT-CTTATGGTGTATCGATA
896609 CAA
1 CAA
896612 GTTTGGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 17 0.52
34 2 0.06
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATCTTATGGTGTATCGATA
Found at i:901554 original size:13 final size:13
Alignment explanation
Indices: 901536--901562 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
901526 CAATTCTTCA
901536 TGTATCGATACAT
1 TGTATCGATACAT
901549 TGTATCGATACAT
1 TGTATCGATACAT
901562 T
1 T
901563 ATGCCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:901649 original size:13 final size:13
Alignment explanation
Indices: 901631--901655 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
901621 ACAATGAACA
901631 TGTATCGATACAT
1 TGTATCGATACAT
901644 TGTATCGATACA
1 TGTATCGATACA
901656 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:901672 original size:33 final size:32
Alignment explanation
Indices: 901612--901676 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
901602 GCCAGTTTCA
*
901612 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
901644 TGTATCGATACAAAGCATA-ATGTATCGATACAT
1 TGTATCGATACAAAG-A-ACATGTATCGATACAT
901677 CTAAAAGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:907297 original size:25 final size:25
Alignment explanation
Indices: 907269--907319 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
907259 CTTACTGCAT
*
907269 ACCTACTCTCTAATTTACCTCTATA
1 ACCTACACTCTAATTTACCTCTATA
907294 ACCTACACTCTAATTTACCTCTATA
1 ACCTACACTCTAATTTACCTCTATA
907319 A
1 A
907320 GTCTTTGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (25 bp):
ACCTACACTCTAATTTACCTCTATA
Found at i:910862 original size:20 final size:20
Alignment explanation
Indices: 910839--910876 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
910829 ACAATGAGAA
910839 ATGTATCGATACAATTTCTT
1 ATGTATCGATACAATTTCTT
910859 ATGTATCGATACAATTTC
1 ATGTATCGATACAATTTC
910877 CTTCTAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACAATTTCTT
Found at i:910924 original size:21 final size:20
Alignment explanation
Indices: 910899--910953 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
910889 CATACGATCT
910899 TGTATCAATACATTTCAGGCA
1 TGTATCAATACATTT-AGGCA
* **
910920 TGTATCAATAAATTTAGTTA
1 TGTATCAATACATTTAGGCA
*
910940 TGTATCGATACATT
1 TGTATCAATACATT
910954 GCCTTATTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (20 bp):
TGTATCAATACATTTAGGCA
Found at i:911743 original size:61 final size:61
Alignment explanation
Indices: 911637--911966 Score: 216
Period size: 61 Copynumber: 5.7 Consensus size: 61
911627 ACTTAAAAAC
* * * * * *
911637 GATAAAGGTG-TCAATGTGCTGATTCACGACCAGTGATATTGGGCTTGAAGATGAGAAGAAT
1 GATAAAGGTGCT-AATATGTTGATTCAAGGCCAGCGATATTAGGCTTGAAGATGAGAAGAAT
*
911698 GATAAAAGTGCTAATATGTTGATTCAAGGCCAGCGATATTAGGC-T-----T-A-AAG-AT
1 GATAAAGGTGCTAATATGTTGATTCAAGGCCAGCGATATTAGGCTTGAAGATGAGAAGAAT
* * * * * * *
911750 GACAAAGGTGCCAATATGTTGATTCAAGGCTAGCGACATTAGACTTGAAGAAGAGAAAAAT
1 GATAAAGGTGCTAATATGTTGATTCAAGGCCAGCGATATTAGGCTTGAAGATGAGAAGAAT
* * * *
911811 GATAAAGGTGTTAATATGCTGATTCAAGGCCAGCAATATTGGGCTT-----T-A-AAG-AT
1 GATAAAGGTGCTAATATGTTGATTCAAGGCCAGCGATATTAGGCTTGAAGATGAGAAGAAT
* * * * * * *
911864 GACAAAGGTG-TCAATGTGCTAATTCAAGGCTAGCGACATT-GGACTTGAAGATGAGAAAAAT
1 GATAAAGGTGCT-AATATGTTGATTCAAGGCCAGCGATATTAGG-CTTGAAGATGAGAAGAAT
* * * *
911925 GATAAAGGT-ATCGATATGCTGATTCAAGGCCAACGATATTAG
1 GATAAAGGTGCT-AATATGTTGATTCAAGGCCAGCGATATTAG
911967 ATTTAAAGAT
Statistics
Matches: 207, Mismatches: 40, Indels: 43
0.71 0.14 0.15
Matches are distributed among these distances:
52 43 0.21
53 41 0.20
54 3 0.01
55 2 0.01
58 1 0.00
59 2 0.01
60 5 0.02
61 108 0.52
62 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.26
Consensus pattern (61 bp):
GATAAAGGTGCTAATATGTTGATTCAAGGCCAGCGATATTAGGCTTGAAGATGAGAAGAAT
Found at i:911791 original size:52 final size:52
Alignment explanation
Indices: 911696--912127 Score: 249
Period size: 52 Copynumber: 8.0 Consensus size: 52
911686 GATGAGAAGA
* * * * *
911696 ATGATAAAAGTGCTAATATGTTGATTCAAGGCCAGCGATATTAGGCTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAG
* * *
911748 ATGACAAAGGTGCCAATATGTTGATTCAAGGCTAGCGACATTAGACTTGAAGAAGAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTT----AA-AG
** * * * *
911805 AAAAATGATAAAGGTGTTAATATGCTGATTCAAGGCCAGCAATATTGGGCTTTAAAG
1 ----ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGAC-TTAAAG
* * * * * *
911862 ATGACAAAGGTGTCAATGTGCTAATTCAAGGCTAGCGACATTGGACTTGAAGATGAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTT--A-A--AG
** * * * *
911919 AAAAATGATAAAGGTATCGATATGCTGATTCAAGGCCAACGATATTAGATTTAAAG
1 ----ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAG
* * * * ** * * * *
911975 ATGACAAAAGTGCCAGTATGCTAATTCAAGGTTAGTGATAAT-GAAATTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAG-ACTTAAAG
* *
912027 ATGATAAAGGTGCCAATGTGCTGATTTAAGGCCAGCGACATTAGACTT-AAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAG
* * * * * * * *
912078 A-AAAAAAGATGCCAATGTGCTAATTCAAGGCTAGTGACATTGGACTTAAA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAA
912128 AAGAAATGGT
Statistics
Matches: 292, Mismatches: 66, Indels: 45
0.72 0.16 0.11
Matches are distributed among these distances:
50 38 0.13
51 7 0.02
52 115 0.39
53 39 0.13
54 1 0.00
55 1 0.00
56 4 0.01
57 6 0.02
58 3 0.01
59 1 0.00
61 75 0.26
62 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.26
Consensus pattern (52 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTAGACTTAAAG
Found at i:912117 original size:50 final size:50
Alignment explanation
Indices: 912032--912126 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
912022 TAAAGATGAT
* * *
912032 AAAGGTGCCAATGTGCTGATTTAAGGCCAGCGACATTAGACTTAAGAAAA
1 AAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTAGACTTAAGAAAA
* * *
912082 AAAGATGCCAATGTGCTAATTCAAGGCTAGTGACATTGGACTTAA
1 AAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTAGACTTAA
912127 AAAGAAATGG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTAGACTTAAGAAAA
Found at i:912229 original size:32 final size:32
Alignment explanation
Indices: 912193--912517 Score: 419
Period size: 32 Copynumber: 10.2 Consensus size: 32
912183 TAGAAGGAAA
* * *
912193 TGCCACCGACTTGTGTGGGCTTTTGAGAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
*
912225 TGCCACCGACTTATGTGGGCCTTT-GAAGAGGGT
1 TGCCACCGACTTGTGTGGG-CTTTAGAA-AGGGT
*
912258 TGCCACCGACTTATGTGGGCTTTAGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
*
912290 TGCCACCGACTTCTGTGGGCTTTAGAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGA-AAGGGT
** *
912323 TGCCATTGACTTGTGTAGGCTTT-GAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
*
912354 TGCCACCGACTTGTGTGGGCTTTAAAGAAGGG-
1 TGCCACCGACTTGTGTGGGCTTTAGA-AAGGGT
*
912386 TGCCACCGACTTGTGTGGGCTTTAGAAGGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
* *
912418 TGCCACCAACTTGTGTGGGTTTTAGAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAG-AAAGGGT
*
912451 TGCCACCGACTTGTATGGGCTTTAGAAA-GGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
* *
912482 TTCCACCAACTTGTGTGGGCTTTA-AAAGGG-
1 TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
912512 TGCCAC
1 TGCCAC
912518 GGAGTTATGG
Statistics
Matches: 260, Mismatches: 24, Indels: 20
0.86 0.08 0.07
Matches are distributed among these distances:
30 8 0.03
31 56 0.22
32 108 0.42
33 88 0.34
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTAGAAAGGGT
Found at i:912547 original size:32 final size:32
Alignment explanation
Indices: 912505--912878 Score: 247
Period size: 32 Copynumber: 11.8 Consensus size: 32
912495 TGTGGGCTTT
* *
912505 AAAAGGGTGCCACGGAGTTATGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
* * * *
912537 GAAAAGGTGCCATGGAGTTGTAGATTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
*
912570 AAAAAGGATGCC-CTGGAGTTATGGACTTAAAAG
1 AAAAAGG-TGCCAC-GGAGTTGTGGACTTAAAAG
* * *
912603 GAAAAGGTGCCGCGAAGTTGTGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
* *
912635 -----GGTGCCACGAAGTTGTGAACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
* * * *
912663 AAAAAGGGTACCACAGAGTTATAGACTT--AA-
1 AAAAA-GGTGCCACGGAGTTGTGGACTTAAAAG
* * *
912693 AAAGA-GTGCCACGAAGTTGTAGACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
** *
912725 AAAAAGGGTGCCATAGAGTTGTAGACTT-----
1 AAAAA-GGTGCCACGGAGTTGTGGACTTAAAAG
** *
912753 AAAAAGGTGCCACGGAACTATGGACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
* * * * *
912786 AAAAATGAGCGATGGAGTTGTGGACTTAAAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
* *
912818 AAAAAGATGCCATGGAGTTGTGGACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
* *
912851 AAAAAGGGTGCCATGGAGTCGTGGACTT
1 AAAAA-GGTGCCACGGAGTTGTGGACTT
912879 TGAGAAGAGA
Statistics
Matches: 265, Mismatches: 52, Indels: 48
0.73 0.14 0.13
Matches are distributed among these distances:
27 36 0.14
28 27 0.10
30 4 0.02
31 4 0.02
32 73 0.28
33 52 0.20
34 69 0.26
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.21
Consensus pattern (32 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAG
Found at i:912600 original size:34 final size:33
Alignment explanation
Indices: 912505--912878 Score: 268
Period size: 34 Copynumber: 11.8 Consensus size: 33
912495 TGTGGGCTTT
* *
912505 AAAAGGGTGCCACGGAGTTATGGACTT-AAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * *
912537 GAAAAGGTGCCATGGAGTTGTAGATTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
*
912570 AAAAAGGATGCC-CTGGAGTTATGGACTT-AAAAG
1 AAAAAGG-TGCCAC-GGAGTTGTGGACTTAAAAAG
* * *
912603 GAAAAGGTGCCGCGAAGTTGTGGACTT-AAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
912635 -----GGTGCCACGAAGTTGTGAACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * *
912663 AAAAAGGGTACCACAGAGTTATAGACTTAAAAAG
1 AAAAA-GGTGCCACGGAGTTGTGGACTTAAAAAG
* *
912697 ----A-GTGCCACGAAGTTGTAGACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
** *
912725 AAAAAGGGTGCCATAGAGTTGTAGACTT------
1 AAAAA-GGTGCCACGGAGTTGTGGACTTAAAAAG
** *
912753 AAAAAGGTGCCACGGAACTATGGACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * *
912786 AAAAATGAGCGATGGAGTTGTGGACTTAAAAA-
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
912818 AAAAAGATGCCATGGAGTTGTGGACTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
912851 AAAAAGGGTGCCATGGAGTCGTGGACTT
1 AAAAA-GGTGCCACGGAGTTGTGGACTT
912879 TGAGAAGAGA
Statistics
Matches: 269, Mismatches: 48, Indels: 48
0.74 0.13 0.13
Matches are distributed among these distances:
27 36 0.13
28 33 0.12
30 1 0.00
32 71 0.26
33 53 0.20
34 75 0.28
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.21
Consensus pattern (33 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
Found at i:912601 original size:93 final size:93
Alignment explanation
Indices: 912503--912758 Score: 247
Period size: 93 Copynumber: 2.7 Consensus size: 93
912493 TGTGTGGGCT
* * *
912503 TTAAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAGGTGCCATGGAGTTGTAGATTTAAAA
1 TTAAAAGGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCATGGAGTTGTAGACTTAAAA
* * *
912568 AGAAAAAGGATGCC-CTGGAGTTATGGAC
66 AGAAAAAGGATACCAC-AGAGTTATAGAC
* * *
912596 TTAAAAGGAAAAGGTGCCGCGAAGTTGTGGACTTAAAA-G----GGTGCCACGAAGTTGT-GAAC
1 TTAAAA-G----GGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCATGGAGTTGTAG-AC
*
912655 TTAAAAAGAAAAAGGGTACCACAGAGTTATAGAC
60 TTAAAAAGAAAAAGGATACCACAGAGTTATAGAC
* * * *
912689 TTAAAAAGAGTGCCACGAAGTTGTAGACTTAAAAAGAAAAAGGGTGCCATAGAGTTGTAGACTTA
1 TT-AAAAGGGTGCCACGAAGTTGTGGACTT-AAAAGGAAAA-GGTGCCATGGAGTTGTAGACTTA
912754 AAAAG
63 AAAAG
912759 GTGCCACGGA
Statistics
Matches: 130, Mismatches: 17, Indels: 29
0.74 0.10 0.16
Matches are distributed among these distances:
89 19 0.15
90 4 0.03
92 1 0.01
93 52 0.40
94 6 0.05
96 23 0.18
97 2 0.02
98 23 0.18
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.21
Consensus pattern (93 bp):
TTAAAAGGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCATGGAGTTGTAGACTTAAAA
AGAAAAAGGATACCACAGAGTTATAGAC
Found at i:912622 original size:66 final size:66
Alignment explanation
Indices: 912505--912863 Score: 192
Period size: 62 Copynumber: 5.7 Consensus size: 66
912495 TGTGGGCTTT
* * * *
912505 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAGGTGCCATGGAGTTGTAGATTTAAAAAG
1 AAAAGGATGCCACGGAGTTATGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTAGACTTAAAAAG
912570 A
66 A
* *
912571 AAAAGGATGCC-CTGGAGTTATGGACTTAAAAGGAAAAGGTGCCGCGAAGTTGTGGACTT-AAAA
1 AAAAGGATGCCAC-GGAGTTATGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTAGACTTAAAAA
912634 G-
65 GA
* * * * * *
912635 ----GG-TGCCACGAAGTTGTGAACTTAAAAAGAAAAAGGGTACCAC-AGAGTTATAGACTTAAA
1 AAAAGGATGCCACGGAGTTATGGACTT-AAAAGGAAAA-GGTGCCACGA-AGTTGTAGACTTAAA
912694 AAG-
63 AAGA
* * * * *
912697 ---A-G-TGCCACGAAGTTGTAGACTTAAAAAGAAAAAGGGTGCCA-TAGAGTTGTAGACTT---
1 AAAAGGATGCCACGGAGTTATGGACTT-AAAAGGAAAA-GGTGCCACGA-AGTTGTAGACTTAAA
912753 ---A
63 AAGA
** * * * * * * *
912754 AAAAGG-TGCCACGGAACTATGGACTTAAAAAGAAAAATGAGCGATGGAGTTGTGGACTTAAAAA
1 AAAAGGATGCCACGGAGTTATGGACTT-AAAAGGAAAAGGTGCCACGAAGTTGTAGACTTAAAAA
912818 -A
65 GA
* * *
912819 AAAA-GATGCCATGGAGTTGTGGACTTAAAAAGAAAAAGGGTGCCA
1 AAAAGGATGCCACGGAGTTATGGACTT-AAAAGGAAAA-GGTGCCA
912864 TGGAGTCGTG
Statistics
Matches: 236, Mismatches: 36, Indels: 42
0.75 0.11 0.13
Matches are distributed among these distances:
59 15 0.06
60 29 0.12
61 43 0.18
62 55 0.23
64 1 0.00
65 38 0.16
66 55 0.23
ACGTcount: A:0.41, C:0.11, G:0.28, T:0.20
Consensus pattern (66 bp):
AAAAGGATGCCACGGAGTTATGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTAGACTTAAAAAG
A
Found at i:912645 original size:27 final size:26
Alignment explanation
Indices: 912604--912660 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 26
912594 ACTTAAAAGG
* *
912604 AAAAGGTGCCGCGAAGTTGTGGACTT
1 AAAAGGTGCCACGAAGTTGTGAACTT
912630 AAAAGGGTGCCACGAAGTTGTGAACTT
1 AAAA-GGTGCCACGAAGTTGTGAACTT
912657 AAAA
1 AAAA
912661 AGAAAAAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.35, C:0.14, G:0.30, T:0.21
Consensus pattern (26 bp):
AAAAGGTGCCACGAAGTTGTGAACTT
Found at i:912704 original size:28 final size:28
Alignment explanation
Indices: 912663--912786 Score: 90
Period size: 28 Copynumber: 4.2 Consensus size: 28
912653 ACTTAAAAAG
* *
912663 AAAAAGGGTACCACAGAGTTATAGACTT
1 AAAAAGAGTGCCACAGAGTTATAGACTT
*
912691 AAAAAGAGTGCCAC-GAAGTTGTAGACTT
1 AAAAAGAGTGCCACAG-AGTTATAGACTT
* *
912719 AAAAAGAAAAAGGGTGCCATAGAGTTGTAGACTT
1 AAAAAG----A--GTGCCACAGAGTTATAGACTT
* ** *
912753 AAAAAG-GTGCCACGGAACTATGGACTT
1 AAAAAGAGTGCCACAGAGTTATAGACTT
912780 AAAAAGA
1 AAAAAGA
912787 AAAATGAGCG
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
27 22 0.29
28 29 0.38
32 1 0.01
34 24 0.31
35 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (28 bp):
AAAAAGAGTGCCACAGAGTTATAGACTT
Found at i:912705 original size:62 final size:61
Alignment explanation
Indices: 912625--912790 Score: 230
Period size: 62 Copynumber: 2.7 Consensus size: 61
912615 CGAAGTTGTG
*
912625 GACTTAAAAGGGTGCCACGAAGTTGTGAACTTAAAAAGAAAAAGGGTACCACAGAGTTATA
1 GACTTAAAAAGGTGCCACGAAGTTGTGAACTTAAAAAGAAAAAGGGTACCACAGAGTTATA
* * *
912686 GACTTAAAAAGAGTGCCACGAAGTTGT-AGACTTAAAAAGAAAAAGGGTGCCATAGAGTTGTA
1 GACTTAAAAAG-GTGCCACGAAGTTGTGA-ACTTAAAAAGAAAAAGGGTACCACAGAGTTATA
*
912748 GACTTAAAAAGGTGCCACGGAACTATG-G-ACTTAAAAAGAAAAA
1 GACTTAAAAAGGTGCCAC-GAAGT-TGTGAACTTAAAAAGAAAAA
912791 TGAGCGATGG
Statistics
Matches: 95, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
61 33 0.35
62 60 0.63
63 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (61 bp):
GACTTAAAAAGGTGCCACGAAGTTGTGAACTTAAAAAGAAAAAGGGTACCACAGAGTTATA
Found at i:912903 original size:30 final size:30
Alignment explanation
Indices: 912867--913029 Score: 199
Period size: 30 Copynumber: 5.5 Consensus size: 30
912857 GGTGCCATGG
*
912867 AGTCGTGGACTTTGAGAAGAGATGCCACTA
1 AGTCATGGACTTTGAGAAGAGATGCCACTA
* * * * *
912897 AATCGTGGATTTTGAAAAAAGA-GCCACTA
1 AGTCATGGACTTTGAGAAGAGATGCCACTA
912926 AGTCATGGACTTTGAAGAAG-GATGCCACTA
1 AGTCATGGACTTTG-AGAAGAGATGCCACTA
*
912956 AGTCGTGGACTTTGAGAAGAGATGCCACTA
1 AGTCATGGACTTTGAGAAGAGATGCCACTA
* *
912986 AATCATGGATTTTGAAGAAG-G-TGCCACTA
1 AGTCATGGACTTTG-AGAAGAGATGCCACTA
913015 AGTCATGGACTTTGA
1 AGTCATGGACTTTGA
913030 AAAGGTTACT
Statistics
Matches: 114, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
28 1 0.01
29 45 0.39
30 63 0.55
31 5 0.04
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (30 bp):
AGTCATGGACTTTGAGAAGAGATGCCACTA
Found at i:912950 original size:59 final size:60
Alignment explanation
Indices: 912867--913032 Score: 230
Period size: 59 Copynumber: 2.8 Consensus size: 60
912857 GGTGCCATGG
* * *
912867 AGTCGTGGACTTTG-AGAAGAGATGCCACTAAATCGTGGATTTTGAAAAAAGA-GCCACTA
1 AGTCATGGACTTTGAAGAAG-GATGCCACTAAGTCGTGGACTTTGAAAAAAGATGCCACTA
* *
912926 AGTCATGGACTTTGAAGAAGGATGCCACTAAGTCGTGGACTTTGAGAAGAGATGCCACTA
1 AGTCATGGACTTTGAAGAAGGATGCCACTAAGTCGTGGACTTTGAAAAAAGATGCCACTA
* * *
912986 AATCATGGATTTTGAAGAAGG-TGCCACTAAGTCATGGACTTTGAAAA
1 AGTCATGGACTTTGAAGAAGGATGCCACTAAGTCGTGGACTTTGAAAA
913033 GGTTACTTTA
Statistics
Matches: 96, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
59 65 0.68
60 31 0.32
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (60 bp):
AGTCATGGACTTTGAAGAAGGATGCCACTAAGTCGTGGACTTTGAAAAAAGATGCCACTA
Found at i:912973 original size:89 final size:88
Alignment explanation
Indices: 912867--913034 Score: 291
Period size: 89 Copynumber: 1.9 Consensus size: 88
912857 GGTGCCATGG
*
912867 AGTCGTGGACTTTGAGAAGAGATGCCACTAAATCGTGGATTTTGAAAAAAGAGCCACTAAGTCAT
1 AGTCGTGGACTTTGAGAAGAGATGCCACTAAATCATGGATTTTGAAAAAAGAGCCACTAAGTCAT
912932 GGACTTTGAAGAAGGATGCCACTA
66 GGACTTTGAA-AAGGATGCCACTA
* * *
912956 AGTCGTGGACTTTGAGAAGAGATGCCACTAAATCATGGATTTTGAAGAAGGTGCCACTAAGTCAT
1 AGTCGTGGACTTTGAGAAGAGATGCCACTAAATCATGGATTTTGAAAAAAGAGCCACTAAGTCAT
913021 GGACTTTGAAAAGG
66 GGACTTTGAAAAGG
913035 TTACTTTATC
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
88 4 0.05
89 71 0.95
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (88 bp):
AGTCGTGGACTTTGAGAAGAGATGCCACTAAATCATGGATTTTGAAAAAAGAGCCACTAAGTCAT
GGACTTTGAAAAGGATGCCACTA
Found at i:920026 original size:42 final size:42
Alignment explanation
Indices: 919967--920053 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
919957 ATCCGGGGGC
*
919967 AAATAAGACATCATTAGAAAGATATTTTGACACACTTTCAAG
1 AAATAAGACATAATTAGAAAGATATTTTGACACACTTTCAAG
*
920009 AAATAAGACATAATTAGAAAGATATTTTGACACACTTTCACG
1 AAATAAGACATAATTAGAAAGATATTTTGACACACTTTCAAG
920051 AAA
1 AAA
920054 AAATATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (42 bp):
AAATAAGACATAATTAGAAAGATATTTTGACACACTTTCAAG
Found at i:921623 original size:40 final size:40
Alignment explanation
Indices: 921572--921649 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
921562 AAAACCTAGA
*
921572 ATGTATCGATACAATGAGAAATGTATCGATACAATTTCTT
1 ATGTATCGATACAATGAAAAATGTATCGATACAATTTCTT
* * * *
921612 ATGTATTGATACATTTAAAAATGTATTGATACAATTTC
1 ATGTATCGATACAATGAAAAATGTATCGATACAATTTC
921650 CTTCTAGTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (40 bp):
ATGTATCGATACAATGAAAAATGTATCGATACAATTTCTT
Found at i:921698 original size:21 final size:20
Alignment explanation
Indices: 921672--921767 Score: 111
Period size: 20 Copynumber: 4.7 Consensus size: 20
921662 CATATGGTCT
*
921672 TGTATCGATACATTTCAGGCA
1 TGTATCGATACATTT-ACGCA
* **
921693 TGTATCGATATATTTACTTA
1 TGTATCGATACATTTACGCA
*
921713 TGTATCGATACATTTCAGGCA
1 TGTATCGATACATTT-ACGCA
**
921734 TGTATCGATACATTTACTTA
1 TGTATCGATACATTTACGCA
921754 TGTATCGATACATT
1 TGTATCGATACATT
921768 GCCTTATTGT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
20 32 0.51
21 31 0.49
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTTACGCA
Found at i:921717 original size:20 final size:20
Alignment explanation
Indices: 921672--921784 Score: 118
Period size: 21 Copynumber: 5.5 Consensus size: 20
921662 CATATGGTCT
***
921672 TGTATCGATACATTTCAGGCA
1 TGTATCGATACATTT-ACTTA
*
921693 TGTATCGATATATTTACTTA
1 TGTATCGATACATTTACTTA
***
921713 TGTATCGATACATTTCAGGCA
1 TGTATCGATACATTT-ACTTA
921734 TGTATCGATACATTTACTTA
1 TGTATCGATACATTTACTTA
**
921754 TGTATCGATACATTGCCTTA
1 TGTATCGATACATTTACTTA
921774 TTGTATCGATA
1 -TGTATCGATA
921785 TAAATTATAG
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
20 36 0.47
21 41 0.53
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTTACTTA
Found at i:921718 original size:41 final size:41
Alignment explanation
Indices: 921672--921767 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
921662 CATATGGTCT
*
921672 TGTATCGATACATTTCAGGCATGTATCGATATATTTACTTA
1 TGTATCGATACATTTCAGGCATGTATCGATACATTTACTTA
921713 TGTATCGATACATTTCAGGCATGTATCGATACATTTACTTA
1 TGTATCGATACATTTCAGGCATGTATCGATACATTTACTTA
921754 TGTATCGATACATT
1 TGTATCGATACATT
921768 GCCTTATTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.41
Consensus pattern (41 bp):
TGTATCGATACATTTCAGGCATGTATCGATACATTTACTTA
Found at i:921780 original size:21 final size:20
Alignment explanation
Indices: 921692--921784 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
921682 CATTTCAGGC
* *
921692 ATGTATCGATATATTTACTT
1 ATGTATCGATACATTGACTT
* ***
921712 ATGTATCGATACATTTCAGGC
1 ATGTATCGATACA-TTGACTT
*
921733 ATGTATCGATACATTTACTT
1 ATGTATCGATACATTGACTT
*
921753 ATGTATCGATACATTGCCTT
1 ATGTATCGATACATTGACTT
921773 ATTGTATCGATA
1 A-TGTATCGATA
921785 TAAATTATAG
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
20 34 0.57
21 26 0.43
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTGACTT
Found at i:924209 original size:41 final size:41
Alignment explanation
Indices: 924152--924242 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
924142 GTTAAAGAAA
* *
924152 TTAAGAATTTGTCCCTTGGTTGTAGGAATTGCTCCTTAATT
1 TTAAGAATTTGTCCCTTGGTTATAGGAATTGCTACTTAATT
* * *
924193 TTAAGGATTTTTCCCTTGGTTATGGGAATTGCTACTTAATT
1 TTAAGAATTTGTCCCTTGGTTATAGGAATTGCTACTTAATT
*
924234 TTAAAAATT
1 TTAAGAATT
924243 GTAAATTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (41 bp):
TTAAGAATTTGTCCCTTGGTTATAGGAATTGCTACTTAATT
Found at i:924873 original size:54 final size:54
Alignment explanation
Indices: 924800--924914 Score: 212
Period size: 54 Copynumber: 2.1 Consensus size: 54
924790 TCACAATTCA
* *
924800 TAGTAAAAAACCAATAGATGTAACTTTTAATATATAATTAAGAGACACAACCTT
1 TAGTTAAAAACCAATAGATGTAACTTTTAATATATAATTAAAAGACACAACCTT
924854 TAGTTAAAAACCAATAGATGTAACTTTTAATATATAATTAAAAGACACAACCTT
1 TAGTTAAAAACCAATAGATGTAACTTTTAATATATAATTAAAAGACACAACCTT
924908 TAGTTAA
1 TAGTTAA
924915 GTAACCATGT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (54 bp):
TAGTTAAAAACCAATAGATGTAACTTTTAATATATAATTAAAAGACACAACCTT
Found at i:926948 original size:20 final size:20
Alignment explanation
Indices: 926923--926962 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
926913 CCTCTCAAGT
926923 ATCCCTCTCTTGTATCCCTC
1 ATCCCTCTCTTGTATCCCTC
926943 ATCCCTCTCTTGTATCCCTC
1 ATCCCTCTCTTGTATCCCTC
926963 TTCAATTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.05, T:0.40
Consensus pattern (20 bp):
ATCCCTCTCTTGTATCCCTC
Found at i:929443 original size:21 final size:22
Alignment explanation
Indices: 929414--929459 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
929404 TGTTCAGACA
** *
929414 AGTAGTACTCCGCAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
929436 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
929457 AGT
1 AGT
929460 TTCAACAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:931398 original size:28 final size:27
Alignment explanation
Indices: 931343--931413 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
931333 GCCACCCATT
931343 TGTTTGTCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
931370 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
* *
931398 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
931414 AGGCTTGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.03
27 21 0.52
28 18 0.45
ACGTcount: A:0.23, C:0.07, G:0.24, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:933142 original size:2 final size:2
Alignment explanation
Indices: 933135--933163 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
933125 CATTAACCTT
933135 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
933164 CATTATCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:934032 original size:4 final size:4
Alignment explanation
Indices: 934025--934106 Score: 80
Period size: 4 Copynumber: 20.8 Consensus size: 4
934015 TGCAGCCGAA
* * *
934025 AAAG AAAG AAAG AAAG AGAG AAAG AAAG AAAG AAA- AAAA AAAG AAAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
* *
934072 AAAC AAAG -AAG AAA- AAGAA AAAG AAAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AA-AG AAAG -AAAG AAAG AAA
934107 AAATATTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
3 8 0.12
4 52 0.79
5 6 0.09
ACGTcount: A:0.79, C:0.01, G:0.20, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:934166 original size:19 final size:19
Alignment explanation
Indices: 934106--934166 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
934096 AAAGAAAGAA
934106 AAAATATTTATATATTTGTAT
1 AAAATA-TTATAT-TTTGTAT
* * * * *
934127 -ATATGTTATTTTTTATTT
1 AAAATATTATATTTTGTAT
934145 AAAATATTATATTTTGTAT
1 AAAATATTATATTTTGTAT
934164 AAA
1 AAA
934167 TTTTTTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
18 5 0.17
19 21 0.72
20 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
AAAATATTATATTTTGTAT
Found at i:935465 original size:16 final size:17
Alignment explanation
Indices: 935436--935478 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
935426 ATTATTTTTA
935436 AATAATTTTA-TTAATT
1 AATAATTTTATTTAATT
935452 -ATAATTTTATTTAATT
1 AATAATTTTATTTAATT
*
935468 AAAAATTTTAT
1 AATAATTTTAT
935479 AAATATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 9 0.38
16 6 0.25
17 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATAATTTTATTTAATT
Found at i:938873 original size:114 final size:112
Alignment explanation
Indices: 938659--938876 Score: 274
Period size: 114 Copynumber: 1.9 Consensus size: 112
938649 TATAAAATGT
* * * **
938659 ATCGATATCCATCATGATTGTATCGATACAAACCTTGGCAATGGCTATGGTTGACTTTCAACAAA
1 ATCGATACCCATCATGAATGTATCGATACAAACCTTAGCAATAACTATGGTTGACTTTCAACAAA
*
938724 ATGTATCGATACACAAGCCTATGTATCAACACAAGTTCATGAGATGC
66 ATGTATCGATACACAAGCCTATGGATCAACACAAGTTCATGAGATGC
* * * * * *
938771 ATCGATACCCATTATGAATGTATTGATACAAGCTTTAGCAATAACTATGGTTGGGATTTTCAGCA
1 ATCGATACCCATCATGAATGTATCGATACAAACCTTAGCAATAACTATGGTT--GACTTTCAACA
* * * *
938836 AAATGTATCGATACACAAGCTTGTGGATCGATACAAGTTCA
64 AAATGTATCGATACACAAGCCTATGGATCAACACAAGTTCA
938877 GGAAGTATTG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
112 43 0.49
114 45 0.51
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (112 bp):
ATCGATACCCATCATGAATGTATCGATACAAACCTTAGCAATAACTATGGTTGACTTTCAACAAA
ATGTATCGATACACAAGCCTATGGATCAACACAAGTTCATGAGATGC
Found at i:942690 original size:20 final size:20
Alignment explanation
Indices: 942662--942736 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
942652 TCATACCCTG
942662 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
942682 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
942702 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
942722 ATGTATCGATACATT
1 ATGTATCGATACATT
942737 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:942729 original size:40 final size:39
Alignment explanation
Indices: 942662--942739 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
942652 TCATACCCTG
* *
942662 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
942702 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
942740 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:943674 original size:23 final size:23
Alignment explanation
Indices: 943647--943702 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
943637 AGCCTTTGAC
943647 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
943670 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
943692 CATGCATTTTT
1 CATGCATTTTT
943703 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:943709 original size:20 final size:21
Alignment explanation
Indices: 943655--943709 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
943645 ACCATGCATT
**
943655 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
943676 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
943698 -TTTTTAACATGT
1 TTTTTTAACATGT
943710 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:950402 original size:13 final size:13
Alignment explanation
Indices: 950384--950429 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
950374 ATCTTTGTTT
950384 TTAATTTTTTTAA
1 TTAATTTTTTTAA
*
950397 TTAATTTTTATAA
1 TTAATTTTTTTAA
*
950410 TTAAATTTCTTTAA
1 TT-AATTTTTTTAA
*
950424 ATAATT
1 TTAATT
950430 AAAATTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (13 bp):
TTAATTTTTTTAA
Found at i:951137 original size:18 final size:17
Alignment explanation
Indices: 951114--951149 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
951104 AAGGCAGTGC
951114 ATATATATACATATATTT
1 ATATATATACATA-ATTT
951132 ATATATATACATAATTT
1 ATATATATACATAATTT
951149 A
1 A
951150 AATTTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATATACATAATTT
Found at i:958166 original size:20 final size:20
Alignment explanation
Indices: 958141--958240 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
958131 TTTTCACAAT
958141 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
958161 TTGTATCGATACATTCTGGGTTTTACCCA
1 TTGTATCGATACA-T-T--G--TT---CA
* *
958190 GATGTATCGATATATTGTTCA
1 -TTGTATCGATACATTGTTCA
*
958211 CTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
958231 TTATATCGAT
1 TTGTATCGAT
958241 TGTAGACACT
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
20 39 0.61
21 3 0.05
22 1 0.02
24 3 0.05
26 3 0.05
28 1 0.02
29 3 0.05
30 11 0.17
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:958632 original size:13 final size:13
Alignment explanation
Indices: 958614--958638 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
958604 ATCACTTAAA
958614 TGTATCGATACAT
1 TGTATCGATACAT
958627 TGTATCGATACA
1 TGTATCGATACA
958639 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.