Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold228
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4123243
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
File 7 of 27
Found at i:958705 original size:52 final size:52
Alignment explanation
Indices: 958649--958775 Score: 209
Period size: 52 Copynumber: 2.4 Consensus size: 52
958639 CTGATCTTTG
* *
958649 TATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAATA
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATA
** *
958701 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATA
958753 TATCGATACATGCAGGCAAATTT
1 TATCGATACATGCAGGCAAATTT
958776 TCATATTTCG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATA
Found at i:963577 original size:11 final size:11
Alignment explanation
Indices: 963561--963590 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
963551 AATTCAAAAC
963561 AATTTTTTTGA
1 AATTTTTTTGA
963572 AATTTTTTTGA
1 AATTTTTTTGA
*
963583 TATTTTTT
1 AATTTTTT
963591 CCTCAAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (11 bp):
AATTTTTTTGA
Found at i:964355 original size:52 final size:50
Alignment explanation
Indices: 964292--964421 Score: 152
Period size: 52 Copynumber: 2.5 Consensus size: 50
964282 TTATTTCCGA
*
964292 GGGGATACTCCAACCCCAATTTTATTCTCAAAACACCAAATTTTTTACAAAC
1 GGGGATACTCCAACCCCAATTTTATTCTCAAAACACC-AA-TTTTCACAAAC
* * * * *
964344 GTGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCACAATC
1 GGGGATACTCCAACCCCAATTTTATTCTCAAAACACCAATTTTCACAAAC
* *
964394 GGGGATACTTCAATCCCGCTATTTTATT
1 GGGGATACTCCAA-CCC-CAATTTTATT
964422 GGAGATACTC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
50 20 0.30
51 4 0.06
52 42 0.64
ACGTcount: A:0.32, C:0.25, G:0.10, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAACCCCAATTTTATTCTCAAAACACCAATTTTCACAAAC
Found at i:964732 original size:80 final size:77
Alignment explanation
Indices: 964425--964750 Score: 289
Period size: 79 Copynumber: 4.1 Consensus size: 77
964415 TTTTATTGGA
* * * ** * * *
964425 GATACTCCAACCCCGTTATTTCCGAGAGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGA-
1 GATACTCCAACCCTGTTATTTTCGAG-GGATACTCCAACCTCGATTTTATTTC-CAAACACTGAT
* *
964489 TTTCTCACAATCGGG
64 TTTC-CATAATCGAG
** * ** *
964504 GATACTCCAACCCTACTATTTTCGCAGGGATACTCCAACCCCGACCTTATTTCTAAAGCA-TCGA
1 GATACTCCAACCCTGTTATTTTCG-AGGGATACTCCAACCTCGATTTTATTTCCAAA-CACT-GA
*
964568 TTTTCCGTAATCGAG
63 TTTTCCATAATCGAG
* * * * *
964583 GATACTCCAACCCCGTTATTTTCGAAGAGATACTCCAACCTTCGATTTTATTTTCAAGGCACCGA
1 GATACTCCAACCCTGTTATTTTCG-AGGGATACTCCAACC-TCGATTTTATTTCCAA-ACACTGA
*
964648 -TTTCCTATAATCAAG
63 TTTTCC-ATAATCGAG
* *
964663 GATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCTCGATTTTATTTCCAGAACACTGAT
1 GATACTCCAACCCTGTTATTTTCGA-GGGATACTCCAACCTCGATTTTATTTCCA-AACACTGAT
*
964728 TTTCCATAATCGGG
64 TTTCCATAATCGAG
964742 GATACTCCA
1 GATACTCCA
964751 GCCTCGTTGT
Statistics
Matches: 201, Mismatches: 35, Indels: 22
0.78 0.14 0.09
Matches are distributed among these distances:
78 4 0.02
79 129 0.64
80 68 0.34
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (77 bp):
GATACTCCAACCCTGTTATTTTCGAGGGATACTCCAACCTCGATTTTATTTCCAAACACTGATTT
TCCATAATCGAG
Found at i:974233 original size:33 final size:33
Alignment explanation
Indices: 974186--974686 Score: 697
Period size: 33 Copynumber: 15.1 Consensus size: 33
974176 GCAAGGTACA
*
974186 CTTTTCCTTCAAAGCCCACAACTCCGTGGCACT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
* *
974219 CTTTTCCTT-TAAAGCCCACAATTACGTGGCACT
1 CTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT
* *
974252 CTTTTCCTTCTAAGCCCACAATTACGTGGCACT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
974285 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
* *
974318 CTTTTCCTT-TAAAGCCCACAATTACGTGGCACT
1 CTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT
*
974351 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
* * * *
974384 CTTTTTCTTTTAAAGCCCACAACTCTGTGGCACA
1 CTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT
974418 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
974451 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
* *
974484 CTTTTCCTT-TAAAGCCCACAATTACGTGGCACT
1 CTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT
*
974517 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
* * * *
974550 CTTTTTCTTTTAAAGCCCACAACTCTGTGGCACA
1 CTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT
974584 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
974617 CTTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
1 C-TTTTCCTTCTAAGCCCACAACTCCGTGGCACT
* * * *
974651 -TTGTTCTTTTTAAGTCCACAACTTCGTGGCA-T
1 CTT-TTCCTTCTAAGCCCACAACTCCGTGGCACT
974683 CTTT
1 CTTT
974687 CACCCTTTCT
Statistics
Matches: 420, Mismatches: 37, Indels: 23
0.88 0.08 0.05
Matches are distributed among these distances:
32 6 0.01
33 323 0.77
34 91 0.22
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (33 bp):
CTTTTCCTTCTAAGCCCACAACTCCGTGGCACT
Found at i:974459 original size:166 final size:166
Alignment explanation
Indices: 974186--974686 Score: 841
Period size: 166 Copynumber: 3.0 Consensus size: 166
974176 GCAAGGTACA
* * * *
974186 CTTTTCCTTCAAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAATTAC-GTGGC
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACT-CTGTGGC
* * *
974249 ACTCTTTTCCTTCTAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGG
65 ACACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGG
974314 CACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACT
130 CACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACT
974351 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
974416 CACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGC
66 CACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGC
974481 ACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACT
131 ACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACT
974517 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
1 CTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
974582 CACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGG
66 CACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTC-TTTTCCTTCTAAGCCCACAACTCCGTGG
* * *
974647 CACT-TTGTTCTTTTTAAGTCCACAACTT-CGTGGCA-T
130 CACTCTT-TTCCTTTAAAGCCCACAA-TTACGTGGCACT
974683 CTTT
1 CTTT
974687 CACCCTTTCT
Statistics
Matches: 321, Mismatches: 10, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
165 33 0.10
166 232 0.72
167 54 0.17
168 2 0.01
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (166 bp):
CTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
CACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGC
ACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACT
Found at i:974731 original size:33 final size:33
Alignment explanation
Indices: 974690--974760 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
974680 CATCTTTCAC
974690 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
974722 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
974755 CCTTCT
1 CCTTCT
974761 AAGCCCAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:974828 original size:49 final size:49
Alignment explanation
Indices: 974760--975530 Score: 954
Period size: 49 Copynumber: 15.8 Consensus size: 49
974750 GCAACCCTTC
* *
974760 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
974809 TAAGTGCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
974858 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
974907 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
974956 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * * * *
975005 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
975054 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
975103 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
975152 TAAGTCCAATATCGCTGGCCTTGACTCAACATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
975201 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
975250 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
975293 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
975342 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
975385 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTT
* * ** *
975437 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * *
975492 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
975531 TCTTTATCAC
Statistics
Matches: 622, Mismatches: 79, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
43 78 0.13
45 2 0.00
47 1 0.00
49 465 0.75
50 1 0.00
52 37 0.06
53 1 0.00
55 36 0.06
56 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:975318 original size:92 final size:92
Alignment explanation
Indices: 975198--975468 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
975188 GCACCTTCAT
975198 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
975263 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
975290 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
975355 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
975382 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
975447 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
975469 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:975517 original size:55 final size:55
Alignment explanation
Indices: 975382--975757 Score: 293
Period size: 55 Copynumber: 6.7 Consensus size: 55
975372 ACATTGGCAC
* *
975382 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
975434 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
975489 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
975553 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
975604 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * * * * *
975659 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATC-CT-T---TTTCTCAT
* *
975719 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
975758 GCACCTTCAT
Statistics
Matches: 253, Mismatches: 46, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
51 5 0.02
52 37 0.15
53 1 0.00
54 7 0.03
55 69 0.27
56 2 0.01
57 2 0.01
58 2 0.01
60 41 0.16
61 3 0.01
62 5 0.02
63 3 0.01
64 5 0.02
65 1 0.00
66 33 0.13
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:975671 original size:170 final size:164
Alignment explanation
Indices: 975382--975768 Score: 639
Period size: 170 Copynumber: 2.3 Consensus size: 164
975372 ACATTGGCAC
*
975382 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
975447 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
975512 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
128 ATGAATCAACATATTGGCATCTTTATCAC-TTT-T--TCAT
*
975553 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
*
975618 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCA
64 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
975683 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
129 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
* * *
975719 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
975769 ATCTCTAAAA
Statistics
Matches: 208, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
164 46 0.22
166 5 0.02
168 1 0.00
169 3 0.01
170 109 0.52
171 6 0.03
173 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (164 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTTCAT
Found at i:975721 original size:60 final size:61
Alignment explanation
Indices: 975650--975769 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 61
975640 TTGACATCCT
* * * * *
975650 TTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCAC
* * * *
975711 TTTT-TCATCTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATCA
1 TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCA
975770 TCTCTAAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 46 0.92
61 4 0.08
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (61 bp):
TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCAC
Found at i:976590 original size:20 final size:19
Alignment explanation
Indices: 976565--976602 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
976555 ATTTCAATGA
976565 TTTGTATCGATACATATTTT
1 TTTGTATCGATACA-ATTTT
976585 TTTGTATCGATACAATTT
1 TTTGTATCGATACAATTT
976603 AAGCTACTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATCGATACAATTTT
Found at i:976662 original size:13 final size:13
Alignment explanation
Indices: 976644--976668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
976634 ATTACTCACA
976644 TGTATCGATACAT
1 TGTATCGATACAT
976657 TGTATCGATACA
1 TGTATCGATACA
976669 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:976733 original size:52 final size:52
Alignment explanation
Indices: 976677--976797 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
976667 CACTGATTTT
*
976677 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
976729 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
976781 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
976798 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:983721 original size:46 final size:46
Alignment explanation
Indices: 983682--983768 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
983672 AAAAGGTGAT
*
983682 AAAAAAA-AAACAAACAAAC-AAAAAAAAAACACACAAAAAAAAAA
1 AAAAAAACAAACAAAAAAACAAAAAAAAAAACACACAAAAAAAAAA
*
983726 AAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAA
1 AAAAAAACAAACAAAAAAACAAAAAAAAAAACACACAAAAAAA
983769 GTGCAAAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 7 0.18
45 11 0.28
46 21 0.54
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (46 bp):
AAAAAAACAAACAAAAAAACAAAAAAAAAAACACACAAAAAAAAAA
Found at i:983728 original size:24 final size:24
Alignment explanation
Indices: 983701--983768 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
983691 ACAAACAAAC
983701 AAAAAAAAAACACAC--AAAAAAA
1 AAAAAAAAAACACACAAAAAAAAA
* *
983723 AAAAAAAAAACAAACAAAAAAACA
1 AAAAAAAAAACACACAAAAAAAAA
*
983747 AAAAAAAAAACACAGAAAAAAA
1 AAAAAAAAAACACACAAAAAAA
983769 GTGCAAAGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.35
24 26 0.65
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAACACACAAAAAAAAA
Found at i:983738 original size:45 final size:43
Alignment explanation
Indices: 983682--983768 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 43
983672 AAAAGGTGAT
*
983682 AAAAAAAAAACAAACAAACAAAAAAAAAACACACAAAAAAAAAA
1 AAAAAAAAAACAAAAAAACAAAAAAAAAA-ACACAAAAAAAAAA
*
983726 AAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAA
1 AAAAAAA-AAACAAAAAAACAAAAAAAAAAACACAAAAAAAAA
983769 GTGCAAAGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (43 bp):
AAAAAAAAAACAAAAAAACAAAAAAAAAAACACAAAAAAAAAA
Found at i:983765 original size:22 final size:21
Alignment explanation
Indices: 983682--983766 Score: 102
Period size: 21 Copynumber: 3.9 Consensus size: 21
983672 AAAAGGTGAT
*
983682 AAAAAAAAAACA-AACAAACA
1 AAAAAAAAAACACAAAAAACA
983702 AAAAAAAAACACACAAAAAA-A
1 AAAAAAAAA-ACACAAAAAACA
983723 AAAAAAAAAACAAACAAAAAAACA
1 AAAAAAAAAAC--AC-AAAAAACA
983747 AAAAAAAAAACACAGAAAAA
1 AAAAAAAAAACACA-AAAAA
983767 AAGTGCAAAG
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
20 11 0.19
21 14 0.25
22 14 0.25
23 6 0.11
24 12 0.21
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAACACAAAAAACA
Found at i:983768 original size:1 final size:1
Alignment explanation
Indices: 983682--983756 Score: 69
Period size: 1 Copynumber: 75.0 Consensus size: 1
983672 AAAAGGTGAT
* * * * * * * * *
983682 AAAAAAAAAACAAACAAACAAAAAAAAAACACACAAAAAAAAAAAAAAAAACAAACAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
983747 AAAAAAAAAA
1 AAAAAAAAAA
983757 CACAGAAAAA
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:984022 original size:11 final size:11
Alignment explanation
Indices: 984006--984058 Score: 72
Period size: 11 Copynumber: 4.8 Consensus size: 11
983996 GTTCTTTTCC
984006 AAAAAAAAA-A
1 AAAAAAAAACA
984016 AAAAAAAAACA
1 AAAAAAAAACA
*
984027 AACAAAAAACA
1 AAAAAAAAACA
984038 AAAAAAAAACA
1 AAAAAAAAACA
*
984049 CAGAAAAAAA
1 -AAAAAAAAA
984059 GTGCAAAGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
10 9 0.24
11 21 0.55
12 8 0.21
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:984058 original size:1 final size:1
Alignment explanation
Indices: 984006--984046 Score: 55
Period size: 1 Copynumber: 41.0 Consensus size: 1
983996 GTTCTTTTCC
* * *
984006 AAAAAAAAAAAAAAAAAAACAAACAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
984047 CACAGAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:984235 original size:290 final size:291
Alignment explanation
Indices: 983716--984339 Score: 1187
Period size: 290 Copynumber: 2.1 Consensus size: 291
983706 AAAAACACAC
983716 AAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAA
1 AAAAAAAAAAAAAAAAACAAAC-AAAAAAC-AAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAA
983781 AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
64 AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
983846 CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
129 CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
983911 ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
194 ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
*
983976 AACCTACTCTTCGGAGAATTGTTCTTTTCC-AA
259 AACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
984008 AAAAAAAAAAAAAAAAACAAACAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAAAA
1 AAAAAAAAAAAAAAAAACAAACAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAAAA
984073 TCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATCCT
66 TCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATCCT
984138 TGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGAAC
131 TGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGAAC
984203 CTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTGAA
196 CTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTGAA
984268 CCTACTCTTCGGAGAACTGTTCTTTTCCAAA
261 CCTACTCTTCGGAGAACTGTTCTTTTCCAAA
*
984299 AAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAC-AAACAAAAAACAAAAA-AAAAA
984340 AAAAGAAGAA
Statistics
Matches: 327, Mismatches: 2, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
290 258 0.79
291 27 0.08
292 37 0.11
293 5 0.02
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (291 bp):
AAAAAAAAAAAAAAAAACAAACAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAAAA
TCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATCCT
TGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGAAC
CTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTGAA
CCTACTCTTCGGAGAACTGTTCTTTTCCAAA
Found at i:984302 original size:1 final size:1
Alignment explanation
Indices: 984296--984343 Score: 69
Period size: 1 Copynumber: 48.0 Consensus size: 1
984286 GTTCTTTTCC
* * *
984296 AAAAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
984344 GAAGAACAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.94, C:0.04, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:984348 original size:13 final size:13
Alignment explanation
Indices: 984296--984349 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
984286 GTTCTTTTCC
984296 AAAAAAAAAAAA-
1 AAAAAAAAAAAAG
*
984308 AAAAAAAACAAAAC
1 AAAAAAAA-AAAAG
984322 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
984335 AAAAAAAAAGAAG
1 AAAAAAAAAAAAG
984348 AA
1 AA
984350 CAACCCCTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
12 8 0.21
13 22 0.58
14 8 0.21
ACGTcount: A:0.91, C:0.04, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:984351 original size:29 final size:27
Alignment explanation
Indices: 984296--984352 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 27
984286 GTTCTTTTCC
984296 AAAAAAAAAAAAAAAAAAAACAAAACA
1 AAAAAAAAAAAAAAAAAAAACAAAACA
*
984323 AAAAAAAAAAAGAAAAAAAAAGAAGAACA
1 AAAAAAAAAAA-AAAAAAAAACAA-AACA
984352 A
1 A
984353 CCCCTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 11 0.41
28 11 0.41
29 5 0.19
ACGTcount: A:0.89, C:0.05, G:0.05, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAAAAAAAAAAAACAAAACA
Found at i:985388 original size:30 final size:30
Alignment explanation
Indices: 985279--985564 Score: 344
Period size: 30 Copynumber: 9.2 Consensus size: 30
985269 AATTCTTCAA
* *
985279 ATCTCTTCTCAAAATCCACGACTCAGTGGC
1 ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
985309 AATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 -ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
985340 ATCTTTTCCTTTAAAGTCCACGACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
985372 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* *
985402 ATCTTTTCCTTTAAAGTCCACAACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
985434 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
985464 ATCTTTTCCTTCAAAGTCCACGACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
*
985496 AT-TTTGTCTCAAAGTCCACGACTCAGTGAC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* * * *
985526 ATTTTTTCTTCAAAGCCCACAACTCTGTGGC
1 ATCTTTTC-TCAAAGTCCACGACTCAGTGGC
985557 ACTCTTTT
1 A-TCTTTT
985565 TCCCTTTTCT
Statistics
Matches: 227, Mismatches: 14, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
30 78 0.34
31 72 0.32
32 77 0.34
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
ATCTTTTCTCAAAGTCCACGACTCAGTGGC
Found at i:985394 original size:62 final size:62
Alignment explanation
Indices: 985287--985557 Score: 420
Period size: 62 Copynumber: 4.4 Consensus size: 62
985277 AAATCTCTTC
* *
985287 TCAAAATCCACGACTCAGTGGCAATCTCT-TCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGC-AT-TTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
*
985350 TTAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* *
985412 TTAAAGTCCACAACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* *
985474 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGACAT-TTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* * *
985535 TCAAAGCCCACAACTCTGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
985558 CTCTTTTTCC
Statistics
Matches: 196, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
61 28 0.14
62 148 0.76
63 20 0.10
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (62 bp):
TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
Found at i:985566 original size:33 final size:33
Alignment explanation
Indices: 985318--986263 Score: 994
Period size: 33 Copynumber: 28.9 Consensus size: 33
985308 CAATCTCTTC
* * *
985318 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * * *
985350 TTAAAGTCCACGACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * *
985380 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985412 TTAAAGTCCACAACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * *
985442 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985474 TCAAAGTCCACGACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * * * *
985504 TCAAAGTCCACGACTCAGTGACA-T-TTTTTCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
985535 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTT-CC--T
*
985572 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985605 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
985638 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985671 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985704 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
985738 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
985771 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985804 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985837 TCTAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
985870 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985903 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
985936 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
985970 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
986003 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
986036 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
986069 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
986102 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
986136 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
986169 TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* *
986203 TCTAAGCCCACAACTCCGTGGCACT-TTGTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTCTT-TTCCT
** * *
986236 TTTAAGTCCACAACTTCGTGGCA-TCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTT
986264 CACCCTTTCT
Statistics
Matches: 799, Mismatches: 92, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
29 1 0.00
30 74 0.09
31 39 0.05
32 77 0.10
33 459 0.57
34 117 0.15
35 3 0.00
36 4 0.01
37 25 0.03
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (33 bp):
TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
Found at i:985769 original size:166 final size:166
Alignment explanation
Indices: 985528--986263 Score: 1038
Period size: 166 Copynumber: 4.4 Consensus size: 166
985518 TCAGTGACAT
* * * *
985528 TTTTTCTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCTAAGCCCACAACTCCGTGG
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT-AAAGCCCACAACT-CGTGG
* * *
985593 CACTCTTTTCCTT-TAAAGCCCACAATTACGTGGCACTCTTTTCCTTCT-AAGCCCACAACTCCG
62 CACTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCG
* *
985656 TGGCACTCTTTTCCTT-TAAAGCCCACAATTACGTGGCACTC
126 TGGCACACTTTTCCTTCT-AAGCCCACAACTACGTGGCACTC
*
985697 TTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCAC
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACTC-GTGGCAC
* * * *
985762 ACTTTTCCTTCAAAGCCCACAACTCCGTGGCACTCTTTTCC-TTTAAAGCCCACAATTACGTGGC
65 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGC
* *
985826 ACTCTTTTCCTTCTAAGCCCACAATTACGTGGCACTC
130 ACACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
* *
985863 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAATTACGTGGCAC
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACT-CGTGGCAC
* * *
985927 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGC
65 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGC
*
985992 ACACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTC
130 ACACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
* *
986029 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAATTACGTGGCAC
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACT-CGTGGCAC
* * *
986093 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGC
65 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGC
*
986158 ACACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTC
130 ACACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
* * *
986195 TTTTTCCTTCTAAGCCCACAACTCCGTGGCACT-TTGTTCTTTTTAAGTCCACAACTTCGTGGCA
1 -TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAAC-TCGTGGCA
986259 -TCTTT
64 CTCTTT
986264 CACCCTTTCT
Statistics
Matches: 528, Mismatches: 30, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
165 67 0.13
166 365 0.69
167 61 0.12
168 1 0.00
169 34 0.06
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (166 bp):
TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACTCGTGGCACT
CTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGCA
CACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
Found at i:986304 original size:133 final size:130
Alignment explanation
Indices: 985528--986283 Score: 797
Period size: 133 Copynumber: 5.7 Consensus size: 130
985518 TCAGTGACAT
* * * *
985528 TTTTTCTTCAAAGCCCACAACT-CTGTGGCACTCTTTTTCCCTTTTCTAAGCCCACAACTCCGTG
1 TTTTCCTTTAAAGCCCACAATTAC-GTGGCACTC-TTTT-CC--TTCTAAGCCCACAACTTCGTG
* * *
985592 GCACTCTTTTCC-TT-TAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCC
61 GCACTCTTTTCCTTTCTAAAGCCCACAACTCCGTGGCA--C--ATCCTTCTAAGCCCACAACTCC
985655 GTGGCACTC
122 GTGGCACTC
* *
985664 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGCATT
1 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACT
* * *
985729 CTTTTTCTTT-TAAAGCCCACAACTCTGTGGCACACTTTTCCTTCAAAGCCCACAACTCCGTGGC
66 CTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACA----TCCTTCTAAGCCCACAACTCCGTGGC
985793 ACTC
127 ACTC
985797 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAA-TTACGTGGCAC
1 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTT-CGTGGCAC
* * *
985861 TCTTTTCC-TTCT-AAGCCCACAACTCCGTGGCAC-TCTTTTCCTTTAAAGCCCACAATTACGTG
65 TCTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACATC-CTT-C--T-AAGCCCACAACTCCGTG
985923 GCACTC
125 GCACTC
* * * * *
985929 TTTTCCTTCT-AAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAAC-TCTGTGGC
1 TTTTCCTT-TAAAGCCCACAATTACGTGGCACTCTTTTCCTTCT-AAGCCCACAACTTC-GTGGC
* *
985992 ACACTTTTCC-TTCT-AAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGT
63 ACTCTTTTCCTTTCTAAAGCCCACAACTCCGTGGCA--C--ATCCTTCTAAGCCCACAACTCCGT
986055 GGCACTC
124 GGCACTC
* *
986062 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGCATT
1 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACT
* *
986127 CTTTTTCTTT-TAAAGCCCACAACTCTGTGGCACACTTTTCCTTCTAAGCCCACAACTCCGTGGC
66 CTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACA----TCCTTCTAAGCCCACAACTCCGTGGC
986191 ACTC
127 ACTC
* * * * *
986195 TTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT-TTGTTCTTTTTAAGTCCACAACTTCGTGGC
1 -TTTTCCTT-TAAAGCCCACAATTACGTGGCACTCTT-TTCCTTCTAAGCCCACAACTTCGTGGC
*
986258 A-TCTTTCACCCTTTCTAAAGCCCACA
63 ACTCTTT--TCCTTTCTAAAGCCCACA
986284 CAAGTCGGTG
Statistics
Matches: 538, Mismatches: 46, Indels: 72
0.82 0.07 0.11
Matches are distributed among these distances:
127 2 0.00
128 2 0.00
129 1 0.00
131 2 0.00
132 137 0.25
133 284 0.53
134 55 0.10
135 10 0.02
136 40 0.07
137 3 0.01
138 2 0.00
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (130 bp):
TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACT
CTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACATCCTTCTAAGCCCACAACTCCGTGGCACTC
Found at i:986308 original size:33 final size:33
Alignment explanation
Indices: 986267--986337 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
986257 CATCTTTCAC
986267 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
986299 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
986332 CCTTCT
1 CCTTCT
986338 AAGCCCAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:986405 original size:49 final size:49
Alignment explanation
Indices: 986337--987107 Score: 954
Period size: 49 Copynumber: 15.8 Consensus size: 49
986327 GCAACCCTTC
* *
986337 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
986386 TAAGTGCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
986435 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
986484 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
986533 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * * * *
986582 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
986631 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
986680 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
986729 TAAGTCCAATATCGCTGGCCTTGACTCAACATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
986778 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
986827 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
986870 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
986919 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
986962 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTT
* * ** *
987014 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * *
987069 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
987108 TCTTTATCAC
Statistics
Matches: 622, Mismatches: 79, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
43 78 0.13
45 2 0.00
47 1 0.00
49 465 0.75
50 1 0.00
52 37 0.06
53 1 0.00
55 36 0.06
56 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:986895 original size:92 final size:92
Alignment explanation
Indices: 986775--987045 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
986765 GCACCTTCAT
986775 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
986840 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
986867 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
986932 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
986959 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
987024 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
987046 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:987094 original size:55 final size:55
Alignment explanation
Indices: 986959--987334 Score: 293
Period size: 55 Copynumber: 6.7 Consensus size: 55
986949 ACATTGGCAC
* *
986959 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
987011 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
987066 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
987130 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
987181 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * * * * *
987236 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATC-CT-T---TTTCTCAT
* *
987296 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
987335 GCACCTTCAT
Statistics
Matches: 253, Mismatches: 46, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
51 5 0.02
52 37 0.15
53 1 0.00
54 7 0.03
55 69 0.27
56 2 0.01
57 2 0.01
58 2 0.01
60 41 0.16
61 3 0.01
62 5 0.02
63 3 0.01
64 5 0.02
65 1 0.00
66 33 0.13
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:987248 original size:170 final size:164
Alignment explanation
Indices: 986959--987345 Score: 639
Period size: 170 Copynumber: 2.3 Consensus size: 164
986949 ACATTGGCAC
*
986959 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
987024 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
987089 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
128 ATGAATCAACATATTGGCATCTTTATCAC-TTT-T--TCAT
*
987130 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
*
987195 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCA
64 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
987260 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
129 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
* * *
987296 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
987346 ATCTCTAAAA
Statistics
Matches: 208, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
164 46 0.22
166 5 0.02
168 1 0.00
169 3 0.01
170 109 0.52
171 6 0.03
173 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (164 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTTCAT
Found at i:987298 original size:60 final size:61
Alignment explanation
Indices: 987227--987346 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 61
987217 TTGACATCCT
* * * * *
987227 TTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCAC
* * * *
987288 TTTT-TCATCTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATCA
1 TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCA
987347 TCTCTAAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 46 0.92
61 4 0.08
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (61 bp):
TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCAC
Found at i:988167 original size:20 final size:19
Alignment explanation
Indices: 988142--988179 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
988132 ATTTCAATGA
988142 TTTGTATCGATACATATTTT
1 TTTGTATCGATACA-ATTTT
988162 TTTGTATCGATACAATTT
1 TTTGTATCGATACAATTT
988180 AAGCTACTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATCGATACAATTTT
Found at i:988239 original size:13 final size:13
Alignment explanation
Indices: 988221--988245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
988211 ATTACTCACA
988221 TGTATCGATACAT
1 TGTATCGATACAT
988234 TGTATCGATACA
1 TGTATCGATACA
988246 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:988310 original size:52 final size:52
Alignment explanation
Indices: 988254--988374 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
988244 CACTGATTTT
*
988254 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
988306 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
988358 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
988375 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:995290 original size:22 final size:22
Alignment explanation
Indices: 995256--995340 Score: 111
Period size: 22 Copynumber: 3.9 Consensus size: 22
995246 AAAAGGTGAT
*
995256 AAAAAAAA-A-ACAAACAAACA
1 AAAAAAAACACACAAAAAAACA
*
995276 AAAAAAAACACACAAAAAAAAA
1 AAAAAAAACACACAAAAAAACA
*
995298 AAAAAAAACAAACAAAAAAACA
1 AAAAAAAACACACAAAAAAACA
*
995320 AAAAAAAAAACACAGAAAAAA
1 AAAAAAAACACACA-AAAAAA
995341 AGTGCAAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.14
21 1 0.02
22 41 0.73
23 6 0.11
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (22 bp):
AAAAAAAACACACAAAAAAACA
Found at i:995302 original size:24 final size:24
Alignment explanation
Indices: 995275--995341 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
995265 ACAAACAAAC
995275 AAAAAAAAACACAC--AAAAAAAA
1 AAAAAAAAACACACAAAAAAAAAA
* *
995297 AAAAAAAAACAAACAAAAAAACAA
1 AAAAAAAAACACACAAAAAAAAAA
*
995321 AAAAAAAAACACAGAAAAAAA
1 AAAAAAAAACACACAAAAAAA
995342 GTGCAAAGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.33
24 26 0.67
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (24 bp):
AAAAAAAAACACACAAAAAAAAAA
Found at i:995311 original size:44 final size:43
Alignment explanation
Indices: 995256--995341 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 43
995246 AAAAGGTGAT
* *
995256 AAAAAAAAAACAAACAAACAAAAAAAAACACACAAAAAAAAAA
1 AAAAAAAAAACAAAAAAACAAAAAAAAAAACACAAAAAAAAAA
*
995299 AAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAA
1 AAAAAAA-AAACAAAAAAACAAAAAAAAAAACACAAAAAAAAA
995342 GTGCAAAGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 7 0.18
44 32 0.82
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (43 bp):
AAAAAAAAAACAAAAAAACAAAAAAAAAAACACAAAAAAAAAA
Found at i:995322 original size:18 final size:19
Alignment explanation
Indices: 995256--995341 Score: 95
Period size: 18 Copynumber: 4.5 Consensus size: 19
995246 AAAAGGTGAT
995256 AAAAAAAAAACAAACAAAC
1 AAAAAAAAAACAAACAAAC
*
995275 -AAAAAAAAACACACAAA-
1 AAAAAAAAAACAAACAAAC
*
995292 AAAAAAAAAAAAAACAAAC
1 AAAAAAAAAACAAACAAAC
* *
995311 AAAAAAACAAAAAAAAAAAC
1 AAAAAAA-AAACAAACAAAC
995331 ACAGAAAAAAA
1 A-A-AAAAAAA
995342 GTGCAAAGTC
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
18 31 0.53
19 7 0.12
20 12 0.21
21 3 0.05
22 5 0.09
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAACAAACAAAC
Found at i:995341 original size:1 final size:1
Alignment explanation
Indices: 995256--995329 Score: 67
Period size: 1 Copynumber: 74.0 Consensus size: 1
995246 AAAAGGTGAT
* * * * * * * * *
995256 AAAAAAAAAACAAACAAACAAAAAAAAACACACAAAAAAAAAAAAAAAAACAAACAAAAAAACAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
995321 AAAAAAAAA
1 AAAAAAAAA
995330 CACAGAAAAA
Statistics
Matches: 55, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:995596 original size:12 final size:12
Alignment explanation
Indices: 995579--995633 Score: 76
Period size: 12 Copynumber: 4.5 Consensus size: 12
995569 GTTCTTTTCC
995579 AAAAAAAAA-AA
1 AAAAAAAAACAA
995590 AAAAAAAAACAA
1 AAAAAAAAACAA
*
995602 ACAAAAAAACAA
1 AAAAAAAAACAA
995614 AAAAAAAACACAGA
1 AAAAAAAA-ACA-A
995628 AAAAAA
1 AAAAAA
995634 GTGCAAAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
11 9 0.23
12 20 0.51
13 3 0.08
14 7 0.18
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:995633 original size:1 final size:1
Alignment explanation
Indices: 995579--995621 Score: 59
Period size: 1 Copynumber: 43.0 Consensus size: 1
995569 GTTCTTTTCC
* * *
995579 AAAAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
995622 CACAGAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:995813 original size:292 final size:292
Alignment explanation
Indices: 995289--995915 Score: 1209
Period size: 292 Copynumber: 2.1 Consensus size: 292
995279 AAAAACACAC
995289 AAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAA
1 AAAAAAAAAAAAAAAAACAAACAAAAAAAC-AAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAA
995354 AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
65 AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
995419 CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
130 CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
995484 ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
195 ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
*
995549 AACCTACTCTTCGGAGAATTGTTCTTTTCCAAA
260 AACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
995582 AAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAAA
1 AAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAAA
995647 ATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATCC
66 ATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATCC
995712 TTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGAA
131 TTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGAA
995777 CCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTGA
196 CCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTGA
995842 ACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
261 ACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
*
995874 AAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAC-AAACAAAAAAACAAAA-AAAAAA
995916 AAAGAAGAAC
Statistics
Matches: 330, Mismatches: 2, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
292 279 0.85
293 45 0.14
294 6 0.02
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.21
Consensus pattern (292 bp):
AAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAAA
ATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATCC
TTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGAA
CCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTGA
ACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
Found at i:995877 original size:1 final size:1
Alignment explanation
Indices: 995871--995918 Score: 69
Period size: 1 Copynumber: 48.0 Consensus size: 1
995861 GTTCTTTTCC
* * *
995871 AAAAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
995919 GAAGAACAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.94, C:0.04, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:995923 original size:13 final size:13
Alignment explanation
Indices: 995871--995924 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
995861 GTTCTTTTCC
995871 AAAAAAAAAAAA-
1 AAAAAAAAAAAAG
*
995883 AAAAAAAACAAAAC
1 AAAAAAAA-AAAAG
995897 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
995910 AAAAAAAAAGAAG
1 AAAAAAAAAAAAG
995923 AA
1 AA
995925 CAACCCCTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
12 8 0.21
13 22 0.58
14 8 0.21
ACGTcount: A:0.91, C:0.04, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:995926 original size:29 final size:27
Alignment explanation
Indices: 995871--995927 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 27
995861 GTTCTTTTCC
995871 AAAAAAAAAAAAAAAAAAAACAAAACA
1 AAAAAAAAAAAAAAAAAAAACAAAACA
*
995898 AAAAAAAAAAAGAAAAAAAAAGAAGAACA
1 AAAAAAAAAAA-AAAAAAAAACAA-AACA
995927 A
1 A
995928 CCCCTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 11 0.41
28 11 0.41
29 5 0.19
ACGTcount: A:0.89, C:0.05, G:0.05, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAAAAAAAAAAAACAAAACA
Found at i:996944 original size:62 final size:62
Alignment explanation
Indices: 996862--997131 Score: 420
Period size: 62 Copynumber: 4.4 Consensus size: 62
996852 AAATCTCTTC
* *
996862 TCAAAATCCACGACTCAGTGGCAATCTCT-TCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGC-AT-TTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
996925 T-AAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* *
996986 TTAAAGTCCACAACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* *
997048 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGACAT-TTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* * *
997109 TCAAAGCCCACAACTCTGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
997132 CTCTTTTTCC
Statistics
Matches: 195, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
60 2 0.01
61 63 0.32
62 129 0.66
63 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (62 bp):
TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
Found at i:996962 original size:30 final size:30
Alignment explanation
Indices: 996854--997138 Score: 351
Period size: 31 Copynumber: 9.2 Consensus size: 30
996844 AATTCTTCAA
* *
996854 ATCTCTTCTCAAAATCCACGACTCAGTGGC
1 ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
996884 AATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 -ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
996915 ATCTTTTCCTTAAAGTCCACGACTCAGTGGC
1 ATCTTTT-CTCAAAGTCCACGACTCAGTGGC
996946 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* *
996976 ATCTTTTCCTTTAAAGTCCACAACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
997008 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
997038 ATCTTTTCCTTCAAAGTCCACGACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
*
997070 AT-TTTGTCTCAAAGTCCACGACTCAGTGAC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* * * *
997100 ATTTTTTCTTCAAAGCCCACAACTCTGTGGC
1 ATCTTTTC-TCAAAGTCCACGACTCAGTGGC
997131 ACTCTTTT
1 A-TCTTTT
997139 TCCCTTTTCT
Statistics
Matches: 227, Mismatches: 14, Indels: 25
0.85 0.05 0.09
Matches are distributed among these distances:
30 82 0.36
31 92 0.41
32 53 0.23
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
ATCTTTTCTCAAAGTCCACGACTCAGTGGC
Found at i:997022 original size:92 final size:89
Alignment explanation
Indices: 996854--997138 Score: 349
Period size: 92 Copynumber: 3.1 Consensus size: 89
996844 AATTCTTCAA
* * *
996854 ATCTCTTCTCAAAATCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCT
1 ATCTTTTCTCAAAGTCCACGACTCAGTGGC-ATCTTTTCTCAAAGTCCACGACTCAGTGGCAT-T
*
996919 TTTCCTTAAAGTCCACGACTCAGTGGC
64 TTT-CTCAAAGTCCACGACTCAGTGGC
* *
996946 AT-TTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACAACTCAGTGGCAT
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGCATCTTTT-C-TCAAAGTCCACGACTCAGTGGCAT
997010 TTTGTCTCAAAGTCCACGACTCAGTGGC
63 TTT-TCTCAAAGTCCACGACTCAGTGGC
*
997038 ATCTTTTCCTTCAAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGTCCACGACTCAGTGACAT
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGCATCTTT-TCTCAAAGTCCACGACTCAGTGGCA-
* * *
997102 TTTTTCTTCAAAGCCCACAACTCTGTGGC
62 TTTTTC-TCAAAGTCCACGACTCAGTGGC
997131 ACTCTTTT
1 A-TCTTTT
997139 TCCCTTTTCT
Statistics
Matches: 170, Mismatches: 12, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
91 8 0.05
92 76 0.45
93 55 0.32
94 31 0.18
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (89 bp):
ATCTTTTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGTCCACGACTCAGTGGCATTTT
TCTCAAAGTCCACGACTCAGTGGC
Found at i:997140 original size:33 final size:33
Alignment explanation
Indices: 996893--997835 Score: 958
Period size: 33 Copynumber: 28.8 Consensus size: 33
996883 CAATCTCTTC
* * *
996893 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
996925 T-AAAGTCCACGACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * *
996954 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
996986 TTAAAGTCCACAACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * *
997016 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997048 TCAAAGTCCACGACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * * * *
997078 TCAAAGTCCACGACTCAGTGACA-T-TTTTTCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
997109 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTT-CC--T
*
997146 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997179 TTAAAGCCCACAATTACGTGGCACTC-TTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
997211 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997244 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997277 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
997311 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
997344 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997377 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997410 TCTAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
997443 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997476 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997509 TCTAAG-CCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
997542 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
997575 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
997608 TCTAAGCCCAACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCC-ACAACTCCGTGGCACTCTTTTCCT
* * *
997642 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
997675 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
997709 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
997742 TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
997776 TCTAAGCCCACAACTCCGTTGCACT-TTGTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTCTT-TTCCT
** * *
997809 TTTAAGTCCACAACTTCGTGGCA-TCTT
1 TCAAAGCCCACAACTCCGTGGCACTCTT
997836 ATCACCCTTT
Statistics
Matches: 792, Mismatches: 92, Indels: 53
0.85 0.10 0.06
Matches are distributed among these distances:
29 2 0.00
30 77 0.10
31 58 0.07
32 97 0.12
33 390 0.49
34 136 0.17
35 3 0.00
36 4 0.01
37 25 0.03
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.33
Consensus pattern (33 bp):
TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
Found at i:997410 original size:66 final size:65
Alignment explanation
Indices: 996893--997835 Score: 939
Period size: 67 Copynumber: 14.4 Consensus size: 65
996883 CAATCTCTTC
* * * * *
996893 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCC-TTAAAGTCCACGACTCAGTGGCA-T-TTTGT-
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTC-GTGGCACTCTTT-TC
996953 C-
64 CT
* * * *
996954 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCTTTAAAGTCCACAACTCAGTGGCA-T-TTTGT-
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTC-GTGGCACTCTTT-TC
997015 C-
64 CT
* * * * * *
997016 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCTTCAAAGTCCACGACTCAGTGGCA-T-TTTGT-
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTC-GTGGCACTCTTT-TC
997077 C-
64 CT
* * * * * *
997078 TCAAAGTCCACGACTCAGTGACA-T-TTTTTCTTCAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTC-GTGGCACTC-TTTT-
997141 CCTTT
63 CC--T
* *
997146 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACTC-TTTCC
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACT-CGTGGCACTCTTTTCC
997210 T
65 T
* *
997211 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCC
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACT-CGTGGCACTCTTTTCC
997276 T
65 T
* * * *
997277 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAACTC-GTGGCACTCTTTTC
997342 CT
64 CT
*
997344 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCC
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACT-CGTGGCACTCTTTTCC
997409 T
65 T
* * *
997410 TCTAAGCCCACAATTACGTGGCACTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTT-TAAAGCCCACAACT-CGTGGCACTCTTTTC
997474 CT
64 CT
* * * *
997476 TTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCT-AAG-CCACAACTCCGTGGCATTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTT-TAAAGCCCACAACT-CGTGGCACTC-TTTT
*
997539 CTT
63 CCT
* * *
997542 TTAAAGCCCACAACTCTGTGGCACACTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTT-TAAAGCCCACAACT-CGTGGCACTCTTTTC
997606 CT
64 CT
* *
997608 TCTAAGCCCAACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTC
1 TCAAAGCCC-ACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACT-CGTGGCACTCTTTTC
997673 CT
64 CT
* * * *
997675 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAACTC-GTGGCACTCTTTTC
997740 CT
64 CT
* *
997742 TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTTGCACT-TTGT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCTT-TAAAGCCCACAACT-CGTGGCACTCTT-T
*
997805 TCTT
62 TCCT
** * *
997809 TTTAAGTCCACAACTTCGTGGCA-TCTT
1 TCAAAGCCCACAACTCCGTGGCACTCTT
997836 ATCACCCTTT
Statistics
Matches: 798, Mismatches: 58, Indels: 48
0.88 0.06 0.05
Matches are distributed among these distances:
61 57 0.07
62 113 0.14
63 1 0.00
64 3 0.00
65 81 0.10
66 239 0.30
67 251 0.31
68 23 0.03
69 1 0.00
70 28 0.04
71 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.33
Consensus pattern (65 bp):
TCAAAGCCCACAACTCCGTGGCACTCTTTTCCTTTAAAGCCCACAACTCGTGGCACTCTTTTCCT
Found at i:997887 original size:33 final size:33
Alignment explanation
Indices: 997841--997911 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
997831 ATCTTATCAC
997841 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
997873 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
997906 CCTTCT
1 CCTTCT
997912 AAGCCCAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:997979 original size:49 final size:49
Alignment explanation
Indices: 997911--998679 Score: 952
Period size: 49 Copynumber: 15.8 Consensus size: 49
997901 GCAACCCTTC
* *
997911 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
997960 TAAGTGCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
998009 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
998058 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
998107 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * * * *
998156 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
998205 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
998254 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
998303 TAAGTCCAATATCGCTGGCCTTGACTCAACATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
998352 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
998401 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
998444 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
998493 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
998536 TAAGTCCAATATAGCTGGCCTTGAATCAGCATA-TGGCACATTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC-CTT-CATCTT
* * ** *
998586 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * *
998641 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
998680 TCTTTATCAC
Statistics
Matches: 620, Mismatches: 79, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
42 5 0.01
43 72 0.12
45 2 0.00
47 1 0.00
48 1 0.00
49 465 0.75
50 32 0.05
51 4 0.01
52 1 0.00
55 36 0.06
56 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:998469 original size:92 final size:92
Alignment explanation
Indices: 998349--998617 Score: 470
Period size: 92 Copynumber: 2.9 Consensus size: 92
998339 GCACCTTCAT
998349 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
998414 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
998441 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
998506 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
998533 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA-TGGCA-CATTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC--TT-CATCTTTAAGTCCAAT
998596 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
998618 GTTGACATCC
Statistics
Matches: 171, Mismatches: 3, Indels: 5
0.96 0.02 0.03
Matches are distributed among these distances:
90 1 0.01
91 5 0.03
92 128 0.75
93 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:998850 original size:169 final size:163
Alignment explanation
Indices: 998533--998916 Score: 619
Period size: 169 Copynumber: 2.3 Consensus size: 163
998523 ACATTGGCAC
998533 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA-TGGCACATTTCCATCTTTAAGTTCAATG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--TT-CATCTTTAAGTTCAATG
998597 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
63 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
998662 TGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
128 TGAATCAACATATTGGCATCTTTATCAC-TTT-T--TCAT
*
998702 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTTCAATG
*
998767 TAGCTGGCCTTGAATCAGCACGTTGACATCC-TTTTCTCATCTTTAGGCCCAATATCGTTGGCCA
63 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
998831 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
128 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
* *
998867 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTCATC
998917 ATCTCTAAAA
Statistics
Matches: 206, Mismatches: 5, Indels: 14
0.92 0.02 0.06
Matches are distributed among these distances:
163 46 0.22
165 5 0.02
167 1 0.00
168 3 0.01
169 61 0.30
170 48 0.23
171 36 0.17
172 5 0.02
173 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (163 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTTCAATGTAG
CTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATGA
ATCAACATATTGGCATCTTTATCACTTTTTCAT
Found at i:998867 original size:60 final size:61
Alignment explanation
Indices: 998793--998917 Score: 155
Period size: 60 Copynumber: 2.1 Consensus size: 61
998783 AGCACGTTGA
* * * *
998793 CATC-CTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 CATCACTTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTT
* * * * *
998853 TATCACTTTT-TCATCTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTT
1 CATCACTTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTT
998913 CATCA
1 CATCA
998918 TCTCTAAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 49 0.91
61 5 0.09
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.38
Consensus pattern (61 bp):
CATCACTTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTT
Found at i:999743 original size:20 final size:19
Alignment explanation
Indices: 999718--999755 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
999708 ATTTCAATGA
999718 TTTGTATCGATACATATTTT
1 TTTGTATCGATACA-ATTTT
999738 TTTGTATCGATACAATTT
1 TTTGTATCGATACAATTT
999756 AAGCTACTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATCGATACAATTTT
Found at i:999815 original size:13 final size:13
Alignment explanation
Indices: 999797--999821 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
999787 ATTACTCACA
999797 TGTATCGATACAT
1 TGTATCGATACAT
999810 TGTATCGATACA
1 TGTATCGATACA
999822 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:999872 original size:52 final size:51
Alignment explanation
Indices: 999810--999950 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 51
999800 ATCGATACAT
**
999810 TGTATCGATACACTGATTTTTGTATCGATACCATGCAGGCAAA-TTGCCCAGA
1 TGTATCGATACACT-ATTAATGTATCGATA-CATGCAGGCAAATTTGCCCAGA
* *
999862 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT-TAATGTATCGATACATGCAGGCAAATTTGCCCAGA
999914 TGTATCGATACACTATTAAATGTATCGATACATGCAG
1 TGTATCGATACACTATT-AATGTATCGATACATGCAG
999951 TAACTTTTCA
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
51 14 0.17
52 66 0.82
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (51 bp):
TGTATCGATACACTATTAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:1006870 original size:33 final size:32
Alignment explanation
Indices: 1006833--1006909 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 32
1006823 AAAAGGTGAT
*
1006833 AAAAAAAAAACAAACAAACAAA-AAAAAACACA
1 AAAAAAAAAACAAAAAAACAAACAAAAAA-ACA
*
1006865 CAAAAAAAAAAAAAAAAAACAAACAAAAAAACA
1 -AAAAAAAAAACAAAAAAACAAACAAAAAAACA
1006898 AAAAAAAAAACA
1 AAAAAAAAAACA
1006910 CAGAAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 11 0.28
33 23 0.57
34 6 0.15
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (32 bp):
AAAAAAAAAACAAAAAAACAAACAAAAAAACA
Found at i:1006878 original size:23 final size:24
Alignment explanation
Indices: 1006852--1006919 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
1006842 ACAAACAAAC
1006852 AAAAAAAAACACACAAAAAAA-AA
1 AAAAAAAAACACACAAAAAAACAA
*
1006875 AAAAAAAAACAAACAAAAAAACAA
1 AAAAAAAAACACACAAAAAAACAA
*
1006899 AAAAAAAAACACAGAAAAAAA
1 AAAAAAAAACACACAAAAAAA
1006920 GTGCAAAGTC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 20 0.49
24 21 0.51
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (24 bp):
AAAAAAAAACACACAAAAAAACAA
Found at i:1006889 original size:45 final size:44
Alignment explanation
Indices: 1006833--1006919 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 44
1006823 AAAAGGTGAT
* *
1006833 AAAAAAAAAACAAACAAACAAAAAAAAACACACAAAAAAAAAAA
1 AAAAAAAAAACAAAAAAACAAAAAAAAAAACACAAAAAAAAAAA
*
1006877 AAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAA
1 AAAAAAA-AAACAAAAAAACAAAAAAAAAAACACAAAAAAAAA
1006920 GTGCAAAGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 7 0.18
45 32 0.82
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (44 bp):
AAAAAAAAAACAAAAAAACAAAAAAAAAAACACAAAAAAAAAAA
Found at i:1006900 original size:18 final size:19
Alignment explanation
Indices: 1006833--1006919 Score: 95
Period size: 19 Copynumber: 4.5 Consensus size: 19
1006823 AAAAGGTGAT
1006833 AAAAAAAAAACAAACAAAC
1 AAAAAAAAAACAAACAAAC
* *
1006852 -AAAAAAAAACACACAAAA
1 AAAAAAAAAACAAACAAAC
*
1006870 AAAAAAAAAAAAAACAAAC
1 AAAAAAAAAACAAACAAAC
* *
1006889 AAAAAAACAAAAAAAAAAAC
1 AAAAAAA-AAACAAACAAAC
1006909 ACAGAAAAAAA
1 A-A-AAAAAAA
1006920 GTGCAAAGTC
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
18 16 0.28
19 22 0.38
20 12 0.21
21 3 0.05
22 5 0.09
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAACAAACAAAC
Found at i:1006916 original size:14 final size:12
Alignment explanation
Indices: 1006835--1006919 Score: 91
Period size: 12 Copynumber: 6.8 Consensus size: 12
1006825 AAGGTGATAA
1006835 AAAAAAAACAAAC
1 AAAAAAAA-AAAC
1006848 AAACAAAAAAAAAC
1 -AA-AAAAAAAAAC
* *
1006862 ACACAAAAAAA-
1 AAAAAAAAAAAC
1006873 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
1006885 AAACAAAAAAAC
1 AAAAAAAAAAAC
1006897 AAAAAAAAAAAC
1 AAAAAAAAAAAC
1006909 ACAGAAAAAAA
1 A-A-AAAAAAA
1006920 GTGCAAAGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
11 9 0.15
12 31 0.51
13 2 0.03
14 13 0.21
15 6 0.10
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:1006919 original size:1 final size:1
Alignment explanation
Indices: 1006833--1006907 Score: 69
Period size: 1 Copynumber: 75.0 Consensus size: 1
1006823 AAAAGGTGAT
* * * * * * * * *
1006833 AAAAAAAAAACAAACAAACAAAAAAAAACACACAAAAAAAAAAAAAAAAAACAAACAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1006898 AAAAAAAAAA
1 AAAAAAAAAA
1006908 CACAGAAAAA
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1007174 original size:12 final size:12
Alignment explanation
Indices: 1007157--1007210 Score: 74
Period size: 12 Copynumber: 4.4 Consensus size: 12
1007147 GTTCTTTTCC
1007157 AAAAAAAAA-AA
1 AAAAAAAAACAA
1007168 AAAAAAAAACAA
1 AAAAAAAAACAA
*
1007180 ACAAAAAAACAA
1 AAAAAAAAACAA
1007192 AAAAAAAACACAGA
1 AAAAAAAA-ACA-A
1007206 AAAAA
1 AAAAA
1007211 GTGCAAAGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
11 9 0.24
12 20 0.53
13 3 0.08
14 6 0.16
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:1007187 original size:19 final size:19
Alignment explanation
Indices: 1007157--1007201 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
1007147 GTTCTTTTCC
1007157 AAAAAAA-AAAAAAA-AAA
1 AAAAAAACAAAAAAACAAA
*
1007174 AAACAAACAAAAAAACAAA
1 AAAAAAACAAAAAAACAAA
1007193 AAAAAAACA
1 AAAAAAACA
1007202 CAGAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.25
18 7 0.29
19 11 0.46
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAACAAAAAAACAAA
Found at i:1007208 original size:21 final size:22
Alignment explanation
Indices: 1007159--1007210 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
1007149 TCTTTTCCAA
1007159 AAAAAAAAAAAAAAAAAACAAAC
1 AAAAAAAAAAAAAAAAAAC-AAC
*
1007182 AAAAAAACAAAAAAAAAAC-AC
1 AAAAAAAAAAAAAAAAAACAAC
*
1007203 AGAAAAAA
1 AAAAAAAA
1007211 GTGCAAAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 8 0.31
23 18 0.69
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAAAAACAAC
Found at i:1007210 original size:1 final size:1
Alignment explanation
Indices: 1007157--1007199 Score: 59
Period size: 1 Copynumber: 43.0 Consensus size: 1
1007147 GTTCTTTTCC
* * *
1007157 AAAAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1007200 CACAGAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1007210 original size:11 final size:11
Alignment explanation
Indices: 1007156--1007201 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
1007146 TGTTCTTTTC
1007156 CAAAAAAAAAA
1 CAAAAAAAAAA
1007167 -AAAAAAAAAA
1 CAAAAAAAAAA
1007177 CAAACAAAAAAA
1 CAAA-AAAAAAA
1007189 CAAAAAAAAAA
1 CAAAAAAAAAA
1007200 CA
1 CA
1007202 CAGAAAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.30
11 12 0.36
12 11 0.33
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:1007389 original size:291 final size:293
Alignment explanation
Indices: 1006866--1007493 Score: 1197
Period size: 291 Copynumber: 2.1 Consensus size: 293
1006856 AAAAACACAC
1006866 AAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCA
1 AAAAAAAAAAAAAAAAAACAAACAAAAAAAC-AAAAAAAAAACACAGAAAAAAAGTGCAAAGTCA
1006931 AAATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGAT
65 AAATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGAT
1006996 CCTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAG
130 CCTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAG
1007061 AACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGT
195 AACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGT
*
1007126 GAACCTACTCTTCGGAGAATTGTTCTTTTCC-AA
260 GAACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
1007159 AAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAACACAG-AAAAAAGTGCAAAGTCAA
1 AAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAA
1007223 AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
66 AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
1007288 CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
131 CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
1007353 ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
196 ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
1007418 AACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
261 AACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
*
1007451 AAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAC-AAACAAAAAAACAAAA-AAAAAA
1007494 AAAGAAGAAC
Statistics
Matches: 330, Mismatches: 2, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
291 242 0.73
292 36 0.11
293 46 0.14
294 6 0.02
ACGTcount: A:0.46, C:0.19, G:0.14, T:0.21
Consensus pattern (293 bp):
AAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAAAAAAAACACAGAAAAAAAGTGCAAAGTCAA
AATCAAAAAGGGAACAACAAAAGTCGAAAAACAAGGACATGAATGTCCGTATGAACAAAATGATC
CTTGATCCTGTTACCCTTAAAATGACATATTTTGGGCCTTTTTACCCATTCTTTCTGAACCAAGA
ACCTTGGCCTACGTTACGGTCCTTCAAAAGCCCATTTCGATCGGACATTGTCGGGTGAACTGGTG
AACCTACTCTTCGGAGAACTGTTCTTTTCCAAA
Found at i:1007454 original size:1 final size:1
Alignment explanation
Indices: 1007448--1007496 Score: 71
Period size: 1 Copynumber: 49.0 Consensus size: 1
1007438 GTTCTTTTCC
* * *
1007448 AAAAAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1007497 GAAGAACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.94, C:0.04, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:1007501 original size:13 final size:13
Alignment explanation
Indices: 1007448--1007502 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
1007438 GTTCTTTTCC
*
1007448 AAAAAAAAAAAAA
1 AAAAAAAAAAAAG
*
1007461 AAAAAAAACAAAAC
1 AAAAAAAA-AAAAG
1007475 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
1007488 AAAAAAAAAGAAG
1 AAAAAAAAAAAAG
1007501 AA
1 AA
1007503 CAACCCCTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
13 26 0.68
14 12 0.32
ACGTcount: A:0.91, C:0.04, G:0.05, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:1007504 original size:29 final size:27
Alignment explanation
Indices: 1007447--1007505 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
1007437 TGTTCTTTTC
1007447 CAAAAAAAAAAAAAAAAAAAAACAAAA
1 CAAAAAAAAAAAAAAAAAAAAACAAAA
*
1007474 CAAAAAAAAAAAAGAAAAAAAAAGAAGAA
1 CAAAAAAAAAAAA-AAAAAAAAACAA-AA
1007503 CAA
1 CAA
1007506 CCCCTTTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 13 0.45
28 11 0.38
29 5 0.17
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (27 bp):
CAAAAAAAAAAAAAAAAAAAAACAAAA
Found at i:1008541 original size:30 final size:30
Alignment explanation
Indices: 1008432--1008717 Score: 344
Period size: 30 Copynumber: 9.2 Consensus size: 30
1008422 AATTCTTCAA
* *
1008432 ATCTCTTCTCAAAATCCACGACTCAGTGGC
1 ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
1008462 AATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 -ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
1008493 ATCTTTTCCTTTAAAGTCCACGACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
1008525 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* *
1008555 ATCTTTTCCTTTAAAGTCCACAACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
1008587 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
1008617 ATCTTTTCCTTCAAAGTCCACGACTCAGTGGC
1 ATCTTTT-C-TCAAAGTCCACGACTCAGTGGC
*
1008649 AT-TTTGTCTCAAAGTCCACGACTCAGTGAC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* * * *
1008679 ATTTTTTCTTCAAAGCCCACAACTCTGTGGC
1 ATCTTTTC-TCAAAGTCCACGACTCAGTGGC
1008710 ACTCTTTT
1 A-TCTTTT
1008718 TCCCTTTTCT
Statistics
Matches: 227, Mismatches: 14, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
30 78 0.34
31 72 0.32
32 77 0.34
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
ATCTTTTCTCAAAGTCCACGACTCAGTGGC
Found at i:1008547 original size:62 final size:62
Alignment explanation
Indices: 1008440--1008710 Score: 420
Period size: 62 Copynumber: 4.4 Consensus size: 62
1008430 AAATCTCTTC
* *
1008440 TCAAAATCCACGACTCAGTGGCAATCTCT-TCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGC-AT-TTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
*
1008503 TTAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* *
1008565 TTAAAGTCCACAACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* *
1008627 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGACAT-TTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
* * *
1008688 TCAAAGCCCACAACTCTGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
1008711 CTCTTTTTCC
Statistics
Matches: 196, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
61 28 0.14
62 148 0.76
63 20 0.10
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (62 bp):
TCAAAGTCCACGACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCT
Found at i:1008719 original size:33 final size:33
Alignment explanation
Indices: 1008471--1009416 Score: 994
Period size: 33 Copynumber: 28.9 Consensus size: 33
1008461 CAATCTCTTC
* * *
1008471 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * * *
1008503 TTAAAGTCCACGACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * *
1008533 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008565 TTAAAGTCCACAACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * *
1008595 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008627 TCAAAGTCCACGACTCAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTCCGTGGCACTCTTT-TCCT
* * * * *
1008657 TCAAAGTCCACGACTCAGTGACA-T-TTTTTCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
1008688 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTT-CC--T
*
1008725 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008758 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
1008791 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008824 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008857 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
1008891 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
1008924 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008957 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1008990 TCTAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
1009023 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1009056 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1009089 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
1009123 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
1009156 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
1009189 TCTAAGCCCACAACTCCGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1009222 TTAAAGCCCACAATTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
* * *
1009255 TCTAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* * *
1009289 TTAAAGCCCACAACTCTGTGGCACACTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
*
1009322 TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TCAAAGCCCACAACTCCGTGGCACTC-TTTTCCT
* *
1009356 TCTAAGCCCACAACTCCGTGGCACT-TTGTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTCTT-TTCCT
** * *
1009389 TTTAAGTCCACAACTTCGTGGCA-TCTTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTT
1009417 CACCCTTTCT
Statistics
Matches: 799, Mismatches: 92, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
29 1 0.00
30 74 0.09
31 39 0.05
32 77 0.10
33 459 0.57
34 117 0.15
35 3 0.00
36 4 0.01
37 25 0.03
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (33 bp):
TCAAAGCCCACAACTCCGTGGCACTCTTTTCCT
Found at i:1008922 original size:166 final size:166
Alignment explanation
Indices: 1008681--1009416 Score: 1038
Period size: 166 Copynumber: 4.4 Consensus size: 166
1008671 TCAGTGACAT
* * * *
1008681 TTTTTCTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCTAAGCCCACAACTCCGTGG
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT-AAAGCCCACAACT-CGTGG
* * *
1008746 CACTCTTTTCCTT-TAAAGCCCACAATTACGTGGCACTCTTTTCCTTCT-AAGCCCACAACTCCG
62 CACTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCG
* *
1008809 TGGCACTCTTTTCCTT-TAAAGCCCACAATTACGTGGCACTC
126 TGGCACACTTTTCCTTCT-AAGCCCACAACTACGTGGCACTC
*
1008850 TTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGCAC
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACTC-GTGGCAC
* * * *
1008915 ACTTTTCCTTCAAAGCCCACAACTCCGTGGCACTCTTTTCC-TTTAAAGCCCACAATTACGTGGC
65 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGC
* *
1008979 ACTCTTTTCCTTCTAAGCCCACAATTACGTGGCACTC
130 ACACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
* *
1009016 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAATTACGTGGCAC
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACT-CGTGGCAC
* * *
1009080 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGC
65 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGC
*
1009145 ACACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTC
130 ACACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
* *
1009182 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTC-TTTTCCTTTAAAGCCCACAATTACGTGGCAC
1 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACT-CGTGGCAC
* * *
1009246 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAACTCTGTGGC
65 TCTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGC
*
1009311 ACACTTTTCCTTCTAAGCCCACAACTCCGTGGCACTC
130 ACACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
* * *
1009348 TTTTTCCTTCTAAGCCCACAACTCCGTGGCACT-TTGTTCTTTTTAAGTCCACAACTTCGTGGCA
1 -TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAAC-TCGTGGCA
1009412 -TCTTT
64 CTCTTT
1009417 CACCCTTTCT
Statistics
Matches: 528, Mismatches: 30, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
165 67 0.13
166 365 0.69
167 61 0.12
168 1 0.00
169 34 0.06
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (166 bp):
TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAAGCCCACAACTCGTGGCACT
CTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTTCCTTTTAAAGCCCACAACTCCGTGGCA
CACTTTTCCTTCTAAGCCCACAACTACGTGGCACTC
Found at i:1009457 original size:133 final size:130
Alignment explanation
Indices: 1008681--1009436 Score: 797
Period size: 133 Copynumber: 5.7 Consensus size: 130
1008671 TCAGTGACAT
* * * *
1008681 TTTTTCTTCAAAGCCCACAACT-CTGTGGCACTCTTTTTCCCTTTTCTAAGCCCACAACTCCGTG
1 TTTTCCTTTAAAGCCCACAATTAC-GTGGCACTC-TTTT-CC--TTCTAAGCCCACAACTTCGTG
* * *
1008745 GCACTCTTTTCC-TT-TAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCC
61 GCACTCTTTTCCTTTCTAAAGCCCACAACTCCGTGGCA--C--ATCCTTCTAAGCCCACAACTCC
1008808 GTGGCACTC
122 GTGGCACTC
* *
1008817 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGCATT
1 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACT
* * *
1008882 CTTTTTCTTT-TAAAGCCCACAACTCTGTGGCACACTTTTCCTTCAAAGCCCACAACTCCGTGGC
66 CTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACA----TCCTTCTAAGCCCACAACTCCGTGGC
1008946 ACTC
127 ACTC
1008950 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAA-TTACGTGGCAC
1 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTT-CGTGGCAC
* * *
1009014 TCTTTTCC-TTCT-AAGCCCACAACTCCGTGGCAC-TCTTTTCCTTTAAAGCCCACAATTACGTG
65 TCTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACATC-CTT-C--T-AAGCCCACAACTCCGTG
1009076 GCACTC
125 GCACTC
* * * * *
1009082 TTTTCCTTCT-AAGCCCACAACTCCGTGGCATTCTTTTTCTTTTAAAGCCCACAAC-TCTGTGGC
1 TTTTCCTT-TAAAGCCCACAATTACGTGGCACTCTTTTCCTTCT-AAGCCCACAACTTC-GTGGC
* *
1009145 ACACTTTTCC-TTCT-AAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGT
63 ACTCTTTTCCTTTCTAAAGCCCACAACTCCGTGGCA--C--ATCCTTCTAAGCCCACAACTCCGT
1009208 GGCACTC
124 GGCACTC
* *
1009215 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTCCGTGGCATT
1 TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACT
* *
1009280 CTTTTTCTTT-TAAAGCCCACAACTCTGTGGCACACTTTTCCTTCTAAGCCCACAACTCCGTGGC
66 CTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACA----TCCTTCTAAGCCCACAACTCCGTGGC
1009344 ACTC
127 ACTC
* * * * *
1009348 TTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT-TTGTTCTTTTTAAGTCCACAACTTCGTGGC
1 -TTTTCCTT-TAAAGCCCACAATTACGTGGCACTCTT-TTCCTTCTAAGCCCACAACTTCGTGGC
*
1009411 A-TCTTTCACCCTTTCTAAAGCCCACA
63 ACTCTTT--TCCTTTCTAAAGCCCACA
1009437 CAAGTCGGTG
Statistics
Matches: 538, Mismatches: 46, Indels: 72
0.82 0.07 0.11
Matches are distributed among these distances:
127 2 0.00
128 2 0.00
129 1 0.00
131 2 0.00
132 137 0.25
133 284 0.53
134 55 0.10
135 10 0.02
136 40 0.07
137 3 0.01
138 2 0.00
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (130 bp):
TTTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTTCCTTCTAAGCCCACAACTTCGTGGCACT
CTTTTCCTTTCTAAAGCCCACAACTCCGTGGCACATCCTTCTAAGCCCACAACTCCGTGGCACTC
Found at i:1009461 original size:33 final size:33
Alignment explanation
Indices: 1009420--1009490 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
1009410 CATCTTTCAC
1009420 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
1009452 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1009485 CCTTCT
1 CCTTCT
1009491 AAGCCCAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 4 0.11
33 33 0.89
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:1009558 original size:49 final size:49
Alignment explanation
Indices: 1009490--1010260 Score: 954
Period size: 49 Copynumber: 15.8 Consensus size: 49
1009480 GCAACCCTTC
* *
1009490 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
1009539 TAAGTGCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
1009588 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
1009637 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
1009686 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * * * *
1009735 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1009784 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
1009833 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
1009882 TAAGTCCAATATCGCTGGCCTTGACTCAACATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1009931 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
1009980 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1010023 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1010072 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
1010115 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTT
* * ** *
1010167 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * *
1010222 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1010261 TCTTTATCAC
Statistics
Matches: 622, Mismatches: 79, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
43 78 0.13
45 2 0.00
47 1 0.00
49 465 0.75
50 1 0.00
52 37 0.06
53 1 0.00
55 36 0.06
56 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:1010048 original size:92 final size:92
Alignment explanation
Indices: 1009928--1010198 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
1009918 GCACCTTCAT
1009928 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1009993 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
1010020 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1010085 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1010112 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
1010177 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
1010199 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1010247 original size:55 final size:55
Alignment explanation
Indices: 1010112--1010487 Score: 293
Period size: 55 Copynumber: 6.7 Consensus size: 55
1010102 ACATTGGCAC
* *
1010112 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
1010164 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
1010219 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
1010283 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
1010334 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * * * * *
1010389 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATC-CT-T---TTTCTCAT
* *
1010449 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
1010488 GCACCTTCAT
Statistics
Matches: 253, Mismatches: 46, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
51 5 0.02
52 37 0.15
53 1 0.00
54 7 0.03
55 69 0.27
56 2 0.01
57 2 0.01
58 2 0.01
60 41 0.16
61 3 0.01
62 5 0.02
63 3 0.01
64 5 0.02
65 1 0.00
66 33 0.13
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:1010401 original size:170 final size:164
Alignment explanation
Indices: 1010112--1010498 Score: 639
Period size: 170 Copynumber: 2.3 Consensus size: 164
1010102 ACATTGGCAC
*
1010112 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
1010177 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
1010242 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
128 ATGAATCAACATATTGGCATCTTTATCAC-TTT-T--TCAT
*
1010283 CATTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
1 C--TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
*
1010348 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCA
64 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
1010413 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
129 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
* * *
1010449 CTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
1010499 ATCTCTAAAA
Statistics
Matches: 208, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
164 46 0.22
166 5 0.02
168 1 0.00
169 3 0.01
170 109 0.52
171 6 0.03
173 38 0.18
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (164 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTTCAT
Found at i:1010451 original size:60 final size:61
Alignment explanation
Indices: 1010380--1010499 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 61
1010370 TTGACATCCT
* * * * *
1010380 TTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCAC
* * * *
1010441 TTTT-TCATCTTTAAGTCCAATATTGCTGACCTTGAATCAGCATATTGGCACCTTCATCA
1 TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCA
1010500 TCTCTAAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 46 0.92
61 4 0.08
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (61 bp):
TTTTCTCATCTTTAAGCCCAATATCGCTGACCATGAATCAACATATTGGCACCTTCATCAC
Found at i:1011320 original size:20 final size:19
Alignment explanation
Indices: 1011295--1011332 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
1011285 ATTTCAATGA
1011295 TTTGTATCGATACATATTTT
1 TTTGTATCGATACA-ATTTT
1011315 TTTGTATCGATACAATTT
1 TTTGTATCGATACAATTT
1011333 AAGCTACTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTGTATCGATACAATTTT
Found at i:1011392 original size:13 final size:13
Alignment explanation
Indices: 1011374--1011398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1011364 ATTACTCACA
1011374 TGTATCGATACAT
1 TGTATCGATACAT
1011387 TGTATCGATACA
1 TGTATCGATACA
1011399 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1011463 original size:52 final size:52
Alignment explanation
Indices: 1011407--1011527 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1011397 CACTGATTTT
*
1011407 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1011459 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1011511 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1011528 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1017340 original size:8 final size:8
Alignment explanation
Indices: 1017329--1017372 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
1017319 TTAAAACAAT
1017329 AAAAAACA
1 AAAAAACA
1017337 AAAAAAC-
1 AAAAAACA
*
1017344 AAAACA-A
1 AAAAAACA
1017351 AAAAAACAA
1 AAAAAAC-A
1017360 AAAAAACA
1 AAAAAACA
1017368 AAAAA
1 AAAAA
1017373 GAAAAAAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 10 0.32
8 13 0.42
9 8 0.26
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:1017341 original size:9 final size:9
Alignment explanation
Indices: 1017329--1017372 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
1017319 TTAAAACAAT
*
1017329 AAAAAACAAA
1 AAAAAA-AAC
1017339 AAAACAAAAC
1 AAAA-AAAAC
1017349 AAAAAAAAC
1 AAAAAAAAC
1017358 AAAAAAAAC
1 AAAAAAAAC
1017367 AAAAAA
1 AAAAAA
1017373 GAAAAAAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
9 20 0.62
10 10 0.31
11 2 0.06
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:1017344 original size:18 final size:17
Alignment explanation
Indices: 1017321--1017372 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 17
1017311 CTTTTTTTTT
1017321 AAAACAATAAAAAACAAA
1 AAAACAA-AAAAAACAAA
*
1017339 AAAAC--AAAACA-AAA
1 AAAACAAAAAAAACAAA
1017353 AAAACAAAAAAAACAAA
1 AAAACAAAAAAAACAAA
1017370 AAA
1 AAA
1017373 GAAAAAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 8 0.28
15 5 0.17
16 5 0.17
17 6 0.21
18 5 0.17
ACGTcount: A:0.87, C:0.12, G:0.00, T:0.02
Consensus pattern (17 bp):
AAAACAAAAAAAACAAA
Found at i:1017355 original size:23 final size:23
Alignment explanation
Indices: 1017321--1017393 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 23
1017311 CTTTTTTTTT
*
1017321 AAAACAATAAAAAACAAAAAAAC
1 AAAACAAAAAAAAACAAAAAAAC
1017344 AAAAC-AAAAAAAACAAAAAAAAC
1 AAAACAAAAAAAAAC-AAAAAAAC
* * *
1017367 AAAA-AAGAAAAAAGAGAAAAAAG
1 AAAACAAAAAAAAACA-AAAAAAC
1017390 AAAA
1 AAAA
1017394 GAACCTGCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
22 9 0.21
23 34 0.79
ACGTcount: A:0.85, C:0.08, G:0.05, T:0.01
Consensus pattern (23 bp):
AAAACAAAAAAAAACAAAAAAAC
Found at i:1018458 original size:62 final size:61
Alignment explanation
Indices: 1018362--1018513 Score: 214
Period size: 62 Copynumber: 2.5 Consensus size: 61
1018352 TTTCTCCTTT
* * *
1018362 CACTTTTCAGTCCTCAAAGAGAATGCCGCATTTTCCTTTTAAAGCCCACAAAAGTTGGTGG
1 CACTTTTCAGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACAAAAGTTGGTGG
* * *
1018423 CACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTTC-AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACAAAAGTTGGTGG
** *
1018485 CACTTCCCAGTTCTCAAAGAGCAGGACGC
1 CACTTTTCAGTCCTCAAAGAGCAGGACGC
1018514 TCTCTCCTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 27 0.34
62 53 0.66
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (61 bp):
CACTTTTCAGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACAAAAGTTGGTGG
Found at i:1018617 original size:94 final size:97
Alignment explanation
Indices: 1018431--1018607 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 97
1018421 GGCACTTTTC
1018431 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGT
1 TAGTCCTCAAAGAGCAGGATGCCTTTTCC---TAAAGCCCACACAAGTTGGTGGCACTTCCCAGT
*
1018496 TCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTT
63 TCTCAAAGAGCAGGACACTCTCTCCTTTCACCCTT
* *
1018531 TAGTCCTCAAAGAGCAGGATGCC-TTT-C-AAAGCCCACACAAGTTGGTGGCACTTTTCTAG-TC
1 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTAAAGCCCACACAAGTTGGTGGCAC-TTCCCAGTTC
1018592 TCAAAGAGCAGGACAC
65 TCAAAGAGCAGGACAC
1018608 ATTTTCCTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
94 41 0.56
95 5 0.07
98 1 0.01
99 3 0.04
100 23 0.32
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (97 bp):
TAGTCCTCAAAGAGCAGGATGCCTTTTCCTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTTCT
CAAAGAGCAGGACACTCTCTCCTTTCACCCTT
Found at i:1018739 original size:62 final size:62
Alignment explanation
Indices: 1018552--1018911 Score: 462
Period size: 61 Copynumber: 5.9 Consensus size: 62
1018542 GAGCAGGATG
* *
1018552 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGT-CTCAAAGAGCAGGACACATTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* * **
1018613 CCTTTTAAAGCCCACCCAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGACGTCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
*
1018674 CCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* * * * *
1018736 CCTTTTAAAGCCCACCCAAGTTGGTGGCAC-CTTATAGTCCTCAAAGAGTAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* **
1018797 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGA-TGCTTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTT-T
** * * * * **
1018859 CCTTGCAAAG-TCATACAAGTTGGTGGCAC-CTTCTAGTCCCCAGGGAGCAGGAC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAC
1018912 CCATTTCATT
Statistics
Matches: 263, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
60 25 0.10
61 152 0.58
62 86 0.33
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (62 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
Found at i:1018752 original size:123 final size:123
Alignment explanation
Indices: 1018527--1018911 Score: 538
Period size: 123 Copynumber: 3.2 Consensus size: 123
1018517 CTCCTTTCAC
*
1018527 CCTT-TAGTCCTCAAAGAGCAGGATGCC-TTT-C----AAAGCCCACACAAGTTGGTGGCACTTT
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT
*
1018585 TCTAGT-CTCAAAGAGCAGGACACATTTTCCTTTTAAAGCCCACCCAAGTTGGTGGCA
66 TCTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACCCAAGTTGGTGGCA
* *
1018642 CCTTCTAGTCCTCAAAGAGCAGGACGTCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTT
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT
1018707 TCTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACCCAAGTTGGTGGCA
66 TCTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACCCAAGTTGGTGGCA
* *
1018765 CCTTATAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT
* ** ** * **
1018830 TCTAGTCCTCAAAGAGTAGGA-TGCTTTCTCCTTGCAAAG-TCATACAAGTTGGTGGCA
66 TCTAGTCCTCAAAGAGCAGGACACCTTT-TCCTTTTAAAGCCCACCCAAGTTGGTGGCA
* **
1018887 CCTTCTAGTCCCCAGGGAGCAGGAC
1 CCTTCTAGTCCTCAAAGAGCAGGAC
1018912 CCATTTCATT
Statistics
Matches: 240, Mismatches: 21, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
115 4 0.02
116 21 0.09
117 3 0.01
118 1 0.00
122 71 0.30
123 140 0.58
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (123 bp):
CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT
TCTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACCCAAGTTGGTGGCA
Found at i:1019539 original size:13 final size:13
Alignment explanation
Indices: 1019521--1019545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1019511 TCACAATTTG
1019521 TATCGATACATTA
1 TATCGATACATTA
1019534 TATCGATACATT
1 TATCGATACATT
1019546 TAGGCATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:1022007 original size:28 final size:28
Alignment explanation
Indices: 1021973--1022041 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
1021963 TTTCACAATC
1021973 GGGGATACTCCAACACCGTTATTTCATCA
1 GGGGATACTCCAACACCGTTATTTC-TCA
* * *
1022002 -GGGATACTCTAACCCCGTTATTTCTGA
1 GGGGATACTCCAACACCGTTATTTCTCA
1022029 GGGGATACTCCAA
1 GGGGATACTCCAA
1022042 TCCCGGCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (28 bp):
GGGGATACTCCAACACCGTTATTTCTCA
Found at i:1022132 original size:78 final size:79
Alignment explanation
Indices: 1022002--1022328 Score: 304
Period size: 79 Copynumber: 4.1 Consensus size: 79
1021992 TATTTCATCA
* * * * * *
1022002 GGGATACTCTAACCCCGTTA-TTTCTGAGGGGATACTCCAATCCCGGCTTTATTTCTAAAATATT
1 GGGATACTCCAACCCCGTTATTTTC-GAAGGGATACTCCAACCCCGGCCTTATTTCTAAAACATC
1022066 GA-TTTCTCACAATCG
65 GATTTTC-CACAATCG
* * *
1022081 GGGATACTCCAACCCCATTATTTTCG-CGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATCG
1 GGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGCCTTATTTCTAAAACATCG
* *
1022145 ATTTTCCATAATCT
66 ATTTTCCACAATCG
* * *** *
1022159 GAGATACTCCAACCTCGTTATTTTCGAAGGGATACTCCAACCTCCGATTTTATTT-TCAAGACA-
1 GGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACC-CCGGCCTTATTTCT-AAAACAT
* * * *
1022222 CCAATTTCCTATAATCT
64 CGATTTTCC-ACAATCG
* * * * *** *
1022239 AGGATACTCAAACCCTGTTATTTTCGAAAGGATACTCCAACCCCGATTTTATTTCTAGAACATCG
1 GGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGCCTTATTTCTAAAACATCG
*
1022304 ATTTTCCATAATCG
66 ATTTTCCACAATCG
1022318 GGGATACTCCA
1 GGGATACTCCA
1022329 GCCTCGTTGA
Statistics
Matches: 206, Mismatches: 34, Indels: 16
0.80 0.13 0.06
Matches are distributed among these distances:
78 62 0.30
79 76 0.37
80 68 0.33
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGCCTTATTTCTAAAACATCG
ATTTTCCACAATCG
Found at i:1022167 original size:185 final size:185
Alignment explanation
Indices: 1021844--1022181 Score: 403
Period size: 185 Copynumber: 1.8 Consensus size: 185
1021834 TTTTAATCTC
* * * * * * *
1021844 GGGGATATTCCAACCCCAGTTTTATTTCCAAAACATTAATTTTTTATAATCGGGGATTCTCCAAT
1 GGGGATACTCCAACCCCAGCTTTATTTCCAAAACATTAATTTCTCACAATCGGGGATACTCCAAC
* * **
1021909 CCCATTATTTCCGAGGGGATACTCCAACTCCAATTTTATTTTGAAAACACCAATTTTCACAATCG
66 CCCATTATTTCCGACGGGATACTCCAACCCCAACCTTATTTTGAAAACACCAATTTTCACAATCG
*
1021974 GGGATACTCCAACAC-CGTTATTTCATCAGGGATACTCTAACCCCGTTATTTCTGA
131 GAGATACTCCAAC-CTCGTTATTTCATCAGGGATACTCTAACCCCGTTATTTCTGA
* * * * *
1022029 GGGGATACTCCAATCCCGGCTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCAGCTTTATTTCCAAAACATTAATTTCTCACAATCGGGGATACTCCAAC
* ** * * * *
1022094 CCCATTATTTTCG-CGGGATACTCCAACCCCGGCCTTATTTCT-AAAGCATCGATTTTCCATAAT
66 CCCATTATTTCCGACGGGATACTCCAACCCCAACCTTATTT-TGAAAACACCAATTTT-CACAAT
*
1022157 CTGAGATACTCCAACCTCGTTATTT
129 CGGAGATACTCCAACCTCGTTATTT
1022182 TCGAAGGGAT
Statistics
Matches: 125, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
184 33 0.26
185 92 0.74
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (185 bp):
GGGGATACTCCAACCCCAGCTTTATTTCCAAAACATTAATTTCTCACAATCGGGGATACTCCAAC
CCCATTATTTCCGACGGGATACTCCAACCCCAACCTTATTTTGAAAACACCAATTTTCACAATCG
GAGATACTCCAACCTCGTTATTTCATCAGGGATACTCTAACCCCGTTATTTCTGA
Found at i:1024375 original size:51 final size:51
Alignment explanation
Indices: 1024311--1024410 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
1024301 GAAAATATTG
*
1024311 AGGTTGGAGTATCCCCGATGGTGAAAAATTGGTATTTTAAAAATAAAATCA
1 AGGTTGGAGTATCCCCGATGGTGAAAAATTAGTATTTTAAAAATAAAATCA
* * *
1024362 AGGTTGGAGTATCCCCGATGGTGGAAAATTAGTGTTTTGAAAATAAAAT
1 AGGTTGGAGTATCCCCGATGGTGAAAAATTAGTATTTTAAAAATAAAAT
1024411 TGGGTTTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (51 bp):
AGGTTGGAGTATCCCCGATGGTGAAAAATTAGTATTTTAAAAATAAAATCA
Found at i:1024375 original size:130 final size:130
Alignment explanation
Indices: 1024233--1024488 Score: 317
Period size: 130 Copynumber: 2.0 Consensus size: 130
1024223 AAAATAATGG
*
1024233 GGTTGGAGTATCCCCGATGGTGAAAAATCGA-TGTTTT-AGAAATAAAAATAGTGTTAGAA-TAT
1 GGTTGGAGTATCCCCGATGGTGAAAAAT-GAGTGTTTTGA-AAAT-AAAATAGGGTTAGAAGTAT
* ** * *
1024295 CCCCTTGA-AAAT-ATTGAGGTTG-GAGTATCCCCGATGGTGAAAAATTGGTATTTTAAAAATAA
63 -CCCTTCAGAAATAACAG-GGTTGAG-GTATCCCCGATGGTGAAAAATCGATATTTTAAAAATAA
1024357 AATCAA
125 AATCAA
* * * *
1024363 GGTTGGAGTATCCCCGATGGTGGAAAATTAGTGTTTTGAAAATAAAATTGGGTTTGAAGTATCCC
1 GGTTGGAGTATCCCCGATGGTGAAAAATGAGTGTTTTGAAAATAAAATAGGGTTAGAAGTATCCC
*
1024428 TTCAGAAATAACAGGGTTGAGGTATCCCCGATGGTGAAAAATCGATATTTTAGAAATAAAA
66 TTCAGAAATAACAGGGTTGAGGTATCCCCGATGGTGAAAAATCGATATTTTAAAAATAAAA
1024489 ACATCAATAA
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
129 19 0.17
130 86 0.79
131 4 0.04
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (130 bp):
GGTTGGAGTATCCCCGATGGTGAAAAATGAGTGTTTTGAAAATAAAATAGGGTTAGAAGTATCCC
TTCAGAAATAACAGGGTTGAGGTATCCCCGATGGTGAAAAATCGATATTTTAAAAATAAAATCAA
Found at i:1024377 original size:79 final size:78
Alignment explanation
Indices: 1024126--1024377 Score: 301
Period size: 79 Copynumber: 3.2 Consensus size: 78
1024116 ATAAAAACGG
* * *
1024126 GGTTAGAGTATCCCTTCAAAAATAACG-GTGTTGGAGTATCTCCGATGGTGAAAAATTGGTGTTT
1 GGTTAGAGTATCCCCTCAAAAATAATGAG-GTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTT
**
1024190 TAGAAATAAAATTGG
65 TAGAAATAAAA-TAA
* * * *
1024205 GGTTAGAGTATTCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATGGTGAAAAATCGATGTTTT
1 GGTTAGAGTATCCCCTCAAAAATAATGAGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTT
1024270 AGAAATAAAA-ATA
66 AGAAATAAAATA-A
* ** * *
1024283 GTGTTAGAATATCCCCTTGAAAATATTGAGGTTGGAGTATCCCCGATGGTGAAAAATTGGTATTT
1 G-GTTAGAGTATCCCCTCAAAAATAATGAGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTT
*
1024348 TAAAAATAAAATCAA
65 TAGAAATAAAAT-AA
*
1024363 GGTTGGAGTATCCCC
1 GGTTAGAGTATCCCC
1024378 GATGGTGGAA
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 143 0.97
80 3 0.02
81 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (78 bp):
GGTTAGAGTATCCCCTCAAAAATAATGAGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTT
AGAAATAAAATAA
Found at i:1024424 original size:51 final size:51
Alignment explanation
Indices: 1024311--1024427 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
1024301 GAAAATATTG
* *
1024311 AGGTTGGAGTATCCCCGATGGTGAAAAATTGGTATTTTAAAAATAAAATCA
1 AGGTTGAAGTATCCCCGATGGTGAAAAATTAGTATTTTAAAAATAAAATCA
* * * * *
1024362 AGGTTGGAGTATCCCCGATGGTGGAAAATTAGTGTTTTGAAAATAAAAT-T
1 AGGTTGAAGTATCCCCGATGGTGAAAAATTAGTATTTTAAAAATAAAATCA
*
1024412 GGGTTTGAAGTATCCC
1 AGG-TTGAAGTATCCC
1024428 TTCAGAAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 2 0.03
51 56 0.97
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.31
Consensus pattern (51 bp):
AGGTTGAAGTATCCCCGATGGTGAAAAATTAGTATTTTAAAAATAAAATCA
Found at i:1026839 original size:158 final size:159
Alignment explanation
Indices: 1026531--1026896 Score: 402
Period size: 159 Copynumber: 2.3 Consensus size: 159
1026521 CAATTTAATA
* *
1026531 TTTT-GAAGATAAAAATGGGGTTGGAGTATCCCCTAGGAAATAACGGGGTTAGAATATCCCCAAT
1 TTTTAGAAGATAAAAATGGGGTTGGAGTATCCCCTAGAAAATAACGAGGTTAGAATATCCCCAAT
* * * * * *
1026595 TGTGAAAAATTGATGTTTTGAAAATAAACTGGCATTGGAGTATCCCTTCAGAAATAACAGGGTTG
66 TGTGAAAAATTCATGTTTTAAAAATAAACCGGCATTAGAGTATCCCCTCAAAAATAACAGGGTTG
*
1026660 GAGTATCCCCGATTGTGG-AAAATCGATG
131 GAGTATCCCCGATGGTGGAAAAATCGATG
* * * * *
1026688 TTTTAGAA-ATAAAAATTGGGGTTGGAGTATCTCCTCGAAAATAACGAGGTTAGAGTATCCTCGA
1 TTTTAGAAGATAAAAA-TGGGGTTGGAGTATCCCCTAGAAAATAACGAGGTTAGAATATCCCCAA
* ** **
1026752 TTGTGGAAAA-TCATTGTTTTAAAAATAAAACCGGGGTTAGAGTATCCCCTCAAAAATAATGGGG
65 TTGTGAAAAATTCA-TGTTTTAAAAAT-AAACCGGCATTAGAGTATCCCCTCAAAAATAACAGGG
*
1026816 TTGGAGTATCCCTGATGGT-GAAAAATCGATG
128 TTGGAGTATCCCCGATGGTGGAAAAATCGATG
* * * * * * * * *
1026847 TTTTAAAAAATGAAACTAGGGCTAGAGTATCCCCTCG-AAATAACGGGGTT
1 TTTTAGAAGATAAAAATGGGGTTGGAGTATCCCCTAGAAAATAACGAGGTT
1026897 GGAGTGTCTT
Statistics
Matches: 175, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 13 0.07
158 77 0.44
159 80 0.46
160 5 0.03
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (159 bp):
TTTTAGAAGATAAAAATGGGGTTGGAGTATCCCCTAGAAAATAACGAGGTTAGAATATCCCCAAT
TGTGAAAAATTCATGTTTTAAAAATAAACCGGCATTAGAGTATCCCCTCAAAAATAACAGGGTTG
GAGTATCCCCGATGGTGGAAAAATCGATG
Found at i:1026841 original size:79 final size:79
Alignment explanation
Indices: 1026539--1026901 Score: 378
Period size: 80 Copynumber: 4.6 Consensus size: 79
1026529 TATTTTGAAG
* * * **
1026539 ATAAAAATGGGGTTGGAGTATCCCCT-AGGAAATAACGGGGTTAGAATATCCCCAATTGTGAAAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCA-GAAATAACGGGGTTGGAGTATCCCTGATTGTGAAAA
* *
1026603 ATTGATGTTTTGAAA
65 ATCGATGTTTTAAAA
** * * * *
1026618 AT-AAACTGGCATTGGAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGAAAAA
*
1026682 TCGATGTTTTAGAA
66 TCGATGTTTTAAAA
* * * * *
1026696 ATAAAAATTGGGGTTGGAGTATCTCCTC-GAAAATAACGAGGTTAGAGTAT-CCTCGATTGTGGA
1 AT-AAAACTGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCT-GATTGTGAA
1026759 AAATC-ATTGTTTTAAAA
63 AAATCGA-TGTTTTAAAA
* * * * *
1026776 ATAAAACCGGGGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCTGATGGTGAAAAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGAAAAA
1026841 TCGATGTTTTAAAAA
66 TCGATGTTTT-AAAA
* * * *
1026856 ATGAAACTAGGGCTAGAGTATCCCCTC-GAAATAACGGGGTTGGAGT
1 ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGT
1026902 GTCTTGATGG
Statistics
Matches: 236, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
78 64 0.27
79 80 0.34
80 92 0.39
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (79 bp):
ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGAAAAA
TCGATGTTTTAAAA
Found at i:1030061 original size:38 final size:40
Alignment explanation
Indices: 1029965--1030631 Score: 132
Period size: 42 Copynumber: 16.4 Consensus size: 40
1029955 GAGTACGTCT
* * *
1029965 TGCTCTTTGAGGACAAAGGAAAAGGAGAACGAAATGGGTCT
1 TGCTCTTTGAGGACAAA-GAAAAGAAAAACGAAATGGGTCC
* * *
1030006 TGCTCCTAGAGGACAAAGAAAA-AAAAAGGAAA-GGGTCC
1 TGCTCTTTGAGGACAAAGAAAAGAAAAACGAAATGGGTCC
* * * ***
1030044 TGCTCTTTGAGGGCAAAG---GGAAAAA-G-AGTACATCC
1 TGCTCTTTGAGGACAAAGAAAAGAAAAACGAAATGGGTCC
* * * * ** *
1030079 TGTTCTTTGAGGACAAAGGAATAA-AGGAAATGAAGTACGCCC
1 TGCTCTTTGAGGACAAA-GAA-AAGA-AAAACGAAATGGGTCC
* * * *
1030121 TGCTGTTTGAGGACAAAGAAGAA-AAGGAAA-TAAAGTGCGTCT
1 TGCTCTTTGAGGACAAAGAA-AAGAA--AAACGAAA-TGGGTCC
* * * *
1030163 TGCTTTTTGAGGACAAAGGGAAAAAAAGGAAATGAAATGTGTCC
1 TGCTCTTTGAGGACAAA--GAAAAGAA--AAACGAAATGGGTCC
* * * **
1030207 TGCTCTTTGAGG----ATAAAAG-AAAA-GGAGTACGTCC
1 TGCTCTTTGAGGACAAAGAAAAGAAAAACGAAATGGGTCC
* * * * *
1030241 TACTCTTTGAGTACAAAAGAAAAAGGAGAACGAAATGGGTCT
1 TGCTCTTTGAGGAC-AAAG-AAAAGAAAAACGAAATGGGTCC
* * * *
1030283 TGCTCCTTGAGGACAAAGGAAAAAAATGAAAAAGGAAA-GTGTCT
1 TGCTCTTTGAGGACAAA-G---AAAA-GAAAAACGAAATGGGTCC
* * **
1030327 TGCTCCTTGAGGAC--A-AAAGGAAAAA-G-AATACGTCC
1 TGCTCTTTGAGGACAAAGAAAAGAAAAACGAAATGGGTCC
* * * * * *
1030362 TGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGTGCGCCC
1 TGCTCTTTGAGGACAAAGAAAAGAA--AAACGAAATGGGTCC
* * *
1030404 TGCTTTTTGAGGACAAAGGAAAA-AAGTAAA-TAAAGTGCGTCC
1 TGCTCTTTGAGGACAAA-GAAAAGAA--AAACGAAA-TGGGTCC
* * * *
1030446 TACTCTTTGAGAACAAAAGGAAAAGAAGGAAATGAAATGTGTCC
1 TGCTCTTTGAGGAC-AAA-GAAAAGAA--AAACGAAATGGGTCC
* * * *
1030490 TACTCTTTGAGGATAAAGGAAAA-AAGGAGAAAGAAATGTGTCC
1 TGCTCTTTGAGGACAAA-GAAAAGAA--A-AACGAAATGGGTCC
* * * * * **
1030533 TGTTTTTTTAGGACAAAGAAAATAACGAAA-TAAAGTGTATCC
1 TGCTCTTTGAGGACAAAGAAAAGAA--AAACGAAA-TGGGTCC
* * * *
1030575 TGCTCTTTGAGGATAAAG--AA-AAAAATGAGAATGTGTCT
1 TGCTCTTTGAGGACAAAGAAAAGAAAAACGA-AATGGGTCC
1030613 TGCTCTTTGAGGACTAAAG
1 TGCTCTTTGAGGAC-AAAG
1030632 TGGGCCACCA
Statistics
Matches: 480, Mismatches: 98, Indels: 98
0.71 0.14 0.14
Matches are distributed among these distances:
34 20 0.04
35 38 0.08
36 12 0.03
37 8 0.02
38 48 0.10
39 17 0.04
40 19 0.04
41 36 0.08
42 140 0.29
43 54 0.11
44 74 0.15
45 14 0.03
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (40 bp):
TGCTCTTTGAGGACAAAGAAAAGAAAAACGAAATGGGTCC
Found at i:1030216 original size:86 final size:83
Alignment explanation
Indices: 1030076--1030631 Score: 361
Period size: 86 Copynumber: 6.8 Consensus size: 83
1030066 AAAGAGTACA
* * * * * *
1030076 TCCTGTTCTTTGAGGACAAAGGAATAAAGGAAATGAAGTACGCCCTGCTGTTTGAGGACAAAGAA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAAGAA
1030141 GAAAAGGAAATAAAGTGCG
66 -AAAAGGAAATAAAGTGCG
* * * *
1030160 TCTTGCTTTTTGAGGACAAAGGGAAAAAAAGGAAATGAAATGTGTCCTGCTCTTTGAGGATAAA-
1 TCCTGCTCTTTGAGGACAAA-GG-AAAAAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAAG
* *
1030224 AGAAAAGG------AGTACG
64 AAAAAAGGAAATAAAGTGCG
* * * * * * *
1030238 TCCTACTCTTTGAGTACAAAAG-AAAAAGGAGAACGAAATGGGTCTTGCTCCTTGAGGACAAAGG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGA-AATGAAATGCGTCCTGCTCTTTGAGGACAAA-G
* *
1030302 AAAAAAATGAAAAAGGAAAGT--G
64 -AAAAAA-G-GAAA-TAAAGTGCG
* * *
1030324 TCTTGCTCCTTGAGGACAAAAGG-AAAAA-G-AAT---A--CGTCCTGCTCTTTGAGAACAAAGA
1 TCCTGCTCTTTGAGGAC-AAAGGAAAAAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAAG-
*
1030381 AAAAAAGGAAATGAAGTGCG
64 AAAAAAGGAAATAAAGTGCG
* * * * *
1030401 CCCTGCTTTTTGAGGACAAAGGAAAAAAGTAAAT-AAAGTGCGTCCTACTCTTTGAGAACAAAAG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAATGAAA-TGCGTCCTGCTCTTTGAGGAC-AAA-
*
1030465 GAAAAGAAGGAAATGAAA-TGTG
63 GAAAA-AAGGAAAT-AAAGTGCG
* * * * * * *
1030487 TCCTACTCTTTGAGGATAAAGGAAAAAAGGAGAAAGAAATGTGTCCTGTTTTTTTAGGACAAAGA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGA-AATGAAATGCGTCCTGCTCTTTGAGGACAAAGA
* **
1030552 AAATAACGAAATAAAGTGTA
65 AAA-AAGGAAATAAAGTGCG
* * *
1030572 TCCTGCTCTTTGAGGATAAA-G--AAAA--AAATGAGAATGTGTCTTGCTCTTTGAGGACTAAAG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAATGA-AATGCGTCCTGCTCTTTGAGGAC-AAAG
1030632 TGGGCCACCA
Statistics
Matches: 371, Mismatches: 66, Indels: 73
0.73 0.13 0.14
Matches are distributed among these distances:
75 12 0.03
76 34 0.09
77 21 0.06
78 29 0.08
79 30 0.08
80 21 0.06
81 6 0.02
82 4 0.01
84 47 0.13
85 44 0.12
86 89 0.24
87 28 0.08
88 6 0.02
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (83 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAATGAAATGCGTCCTGCTCTTTGAGGACAAAGAA
AAAAGGAAATAAAGTGCG
Found at i:1030241 original size:34 final size:35
Alignment explanation
Indices: 1030203--1030268 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
1030193 AATGAAATGT
* *
1030203 GTCCTGCTCTTTGAGGATAAAAG-AAAAGGAGTAC
1 GTCCTACTCTTTGAGGACAAAAGAAAAAGGAGTAC
*
1030237 GTCCTACTCTTTGAGTACAAAAGAAAAAGGAG
1 GTCCTACTCTTTGAGGACAAAAGAAAAAGGAG
1030269 AACGAAATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (35 bp):
GTCCTACTCTTTGAGGACAAAAGAAAAAGGAGTAC
Found at i:1030250 original size:120 final size:120
Alignment explanation
Indices: 1030101--1030470 Score: 394
Period size: 120 Copynumber: 3.1 Consensus size: 120
1030091 ACAAAGGAAT
* * * * *
1030101 AAAGGAAATGAAGTACGCCCTGCTGTTTGAGGACAAAGAAGAAAAGGAAATAAAGTGCGTCTTGC
1 AAAGGAAAAGGAGTACGTCCTGCTCTTTGAGAACAAAGAAGAAAAGGAAATAAAGTGCGTCTTGC
* *
1030166 TTTTTGAGGACAAAGGGAAAAAAAGGAAATGAAATGTGTCCTGCTCTTTGAGGATA
66 TTTTTGAGGACAAA-GGAAAAAAAGAAAATGAAATGTGTCCTGCTCTTTGAGGACA
* * * *
1030222 AAA-GAAAAGGAGTACGTCCTACTCTTTGAGTAC-AA-AAGAAAAAGGAGAACGAAA-TGGGTCT
1 AAAGGAAAAGGAGTACGTCCTGCTCTTTGAGAACAAAGAAG-AAAAGGA-AA-TAAAGTGCGTCT
** * * *
1030283 TGCTCCTTGAGGACAAAGGAAAAAAATGAAAAAGGAAA-GTGTCTTGCTCCTTGAGGACA
63 TGCTTTTTGAGGACAAAGGAAAAAAA-G-AAAATGAAATGTGTCCTGCTCTTTGAGGACA
* * * * * *
1030342 AAAGGAAAAAGAATACGTCCTGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGTGCGCCCTGC
1 AAAGGAAAAGGAGTACGTCCTGCTCTTTGAGAACAAAGAAGAAAAGGAAATAAAGTGCGTCTTGC
* * * *
1030407 TTTTTGAGGACAAAGG-AAAAAAGTAAAT-AAAGTGCGTCCTACTCTTTGAGAACA
66 TTTTTGAGGACAAAGGAAAAAAAGAAAATGAAA-TGTGTCCTGCTCTTTGAGGACA
1030461 AAAGGAAAAG
1 AAAGGAAAAG
1030471 AAGGAAATGA
Statistics
Matches: 203, Mismatches: 35, Indels: 24
0.77 0.13 0.09
Matches are distributed among these distances:
117 3 0.01
118 6 0.03
119 44 0.22
120 77 0.38
121 62 0.31
122 9 0.04
123 2 0.01
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (120 bp):
AAAGGAAAAGGAGTACGTCCTGCTCTTTGAGAACAAAGAAGAAAAGGAAATAAAGTGCGTCTTGC
TTTTTGAGGACAAAGGAAAAAAAGAAAATGAAATGTGTCCTGCTCTTTGAGGACA
Found at i:1030299 original size:42 final size:41
Alignment explanation
Indices: 1030247--1030354 Score: 117
Period size: 44 Copynumber: 2.5 Consensus size: 41
1030237 GTCCTACTCT
* * *
1030247 TTGAGTACAAAAGAAAAAGGAGAACGAAATGGGTCTTGCTCC
1 TTGAGGACAAAAGAAAAAGAAAAACGAAA-GGGTCTTGCTCC
* * *
1030289 TTGAGGACAAAGGAAAAAAATGAAAAAGGAAAGTGTCTTGCTCC
1 TTGAGGACAAA--AGAAAAA-GAAAAACGAAAGGGTCTTGCTCC
1030333 TTGAGGACAAAAGGAAAAAGAA
1 TTGAGGACAAAA-GAAAAAGAA
1030355 TACGTCCTGC
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 14 0.25
43 5 0.09
44 28 0.51
45 8 0.15
ACGTcount: A:0.46, C:0.11, G:0.26, T:0.17
Consensus pattern (41 bp):
TTGAGGACAAAAGAAAAAGAAAAACGAAAGGGTCTTGCTCC
Found at i:1030406 original size:42 final size:42
Alignment explanation
Indices: 1030358--1030631 Score: 241
Period size: 42 Copynumber: 6.5 Consensus size: 42
1030348 AAAAGAATAC
* *
1030358 GTCCTGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGTGC
1 GTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAATGAAGTGT
* * * * * *
1030400 GCCCTGCTTTTTGAGGACAAAGGAAAAAAGTAAATAAAGTGC
1 GTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAATGAAGTGT
* * * *
1030442 GTCCTACTCTTTGAGAACAAAAGGAAAAGAAGGAAATGAAATGT
1 GTCCTGCTCTTTGAGGAC-AAA-GAAAAAAAGGAAATGAAGTGT
* * * * *
1030486 GTCCTACTCTTTGAGGATAAAGGAAAAAAGGAGAAAGAAATGT
1 GTCCTGCTCTTTGAGGACAAAGAAAAAAAGGA-AATGAAGTGT
* * * * * *
1030529 GTCCTGTTTTTTTAGGACAAAGAAAATAACGAAATAAAGTGT
1 GTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAATGAAGTGT
* * *
1030571 ATCCTGCTCTTTGAGGATAAAGAAAAAAATG--A-GAA-TGT
1 GTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAATGAAGTGT
*
1030609 GTCTTGCTCTTTGAGGACTAAAG
1 GTCCTGCTCTTTGAGGAC-AAAG
1030632 TGGGCCACCA
Statistics
Matches: 185, Mismatches: 43, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
38 18 0.10
39 6 0.03
40 1 0.01
42 90 0.49
43 39 0.21
44 31 0.17
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (42 bp):
GTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAATGAAGTGT
Found at i:1030477 original size:283 final size:276
Alignment explanation
Indices: 1029928--1030512 Score: 832
Period size: 283 Copynumber: 2.1 Consensus size: 276
1029918 AAGATGAGGC
* * * *
1029928 GTCCTACTCTTTAAGGATAAAA-AAAAGGAGTACGTCTTGCTCTTTGAGGACAAAGGAAAAGGAG
1 GTCCTACTCTTTGAGGATAAAAGAAAAGGAGTACGTCCTACTCTTTGAGGACAAAGAAAAAGGAG
* *
1029992 AACGAAATGGGTCTTGCTCCTAGAGGACAAAGAAAAAAAAAGGAAAGGGTCCTGCTCTTTGAGGG
66 AACGAAATGGGTCTTGCTCCTAGAGGACAAAGAAAAAAAAAGGAAAGGGTCCTGCTCCTTGAGGA
* * * * * *
1030057 CAAAGGGAAAAAGAGTACATCCTGTTCTTTGAGGACAAAGGAATAAAGGAAATGAAGTACGCCCT
131 CAAAAGGAAAAAGAATACATCCTGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGTACGCCCT
* * * * *
1030122 GCTGTTTGAGGACAAAGAAGAAAAGGAAATAAAGTGCGTCTTGCTTTTTGAGGACAAAGGGAAAA
196 GCTGTTTGAGGACAAAGAAGAAAAGGAAATAAAGTGCGTCCTACTCTTTGAGAACAAAAGGAAAA
1030187 AAAGGAAATGAAATGT
261 AAAGGAAATGAAATGT
* *
1030203 GTCCTGCTCTTTGAGGATAAAAGAAAAGGAGTACGTCCTACTCTTTGAGTACAAAAGAAAAAGGA
1 GTCCTACTCTTTGAGGATAAAAGAAAAGGAGTACGTCCTACTCTTTGAGGAC-AAAGAAAAAGGA
* * *
1030268 GAACGAAATGGGTCTTGCTCCTTGAGGACAAAGGAAAAAAATGAAAAAGGAAAGTGTCTTGCTCC
65 GAACGAAATGGGTCTTGCTCCTAGAGGACAAA-G---AAAA--AAAAAGGAAAGGGTCCTGCTCC
*
1030333 TTGAGGACAAAAGGAAAAAGAATACGTCCTGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGT
124 TTGAGGACAAAAGGAAAAAGAATACATCCTGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGT
* * *
1030398 GCGCCCTGCTTTTTGAGGACAAAGGAA-AAAAGTAAATAAAGTGCGTCCTACTCTTTGAGAACAA
189 ACGCCCTGCTGTTTGAGGACAAA-GAAGAAAAGGAAATAAAGTGCGTCCTACTCTTTGAGAACAA
*
1030462 AAGGAAAAGAAGGAAATGAAATGT
253 AAGGAAAAAAAGGAAATGAAATGT
*
1030486 GTCCTACTCTTTGAGGATAAAGGAAAA
1 GTCCTACTCTTTGAGGATAAAAGAAAA
1030513 AAGGAGAAAG
Statistics
Matches: 272, Mismatches: 29, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
275 20 0.07
276 26 0.10
277 42 0.15
278 1 0.00
281 4 0.01
283 176 0.65
284 3 0.01
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (276 bp):
GTCCTACTCTTTGAGGATAAAAGAAAAGGAGTACGTCCTACTCTTTGAGGACAAAGAAAAAGGAG
AACGAAATGGGTCTTGCTCCTAGAGGACAAAGAAAAAAAAAGGAAAGGGTCCTGCTCCTTGAGGA
CAAAAGGAAAAAGAATACATCCTGCTCTTTGAGAACAAAGAAAAAAAGGAAATGAAGTACGCCCT
GCTGTTTGAGGACAAAGAAGAAAAGGAAATAAAGTGCGTCCTACTCTTTGAGAACAAAAGGAAAA
AAAGGAAATGAAATGT
Found at i:1030681 original size:62 final size:62
Alignment explanation
Indices: 1030615--1031138 Score: 726
Period size: 62 Copynumber: 8.5 Consensus size: 62
1030605 ATGTGTCTTG
** * *
1030615 CTCTTTGAGGACTAAAGTGG-GCCACCAACTCGTGTACGTTTTGAAAAGAAAAAGGTGTCCTA
1 CTCTTTGAGGACTAAAG-GGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* *
1030677 CTCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTG
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* ***
1030739 CTCTTTGAGCACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGTTATCCTA
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* * * *
1030801 CTCTTTGGGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAATAAAAAGGCATCCTA
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
** *
1030863 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGTTGTCCTG
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* * *
1030925 CTCTTTGGGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTGAAAAGAAAAAGGCGTCCTA
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* * * *
1030987 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGAAAAGGCATCCTA
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* * * * * * *
1031049 CTCTTTGAGGACAAAATGATGCCACCAACTCGTGTAGGCTTTGAAAAGAAAAAGGCATCTTG
1 CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
* * *
1031111 CTTTTTGAGGACAAAAGGATGCCACCAA
1 CTCTTTGAGGACTAAAGGGTGCCACCAA
1031139 TGAAAAGAAA
Statistics
Matches: 415, Mismatches: 46, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
61 2 0.00
62 413 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (62 bp):
CTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTA
Found at i:1030827 original size:186 final size:186
Alignment explanation
Indices: 1030613--1031667 Score: 1298
Period size: 186 Copynumber: 5.7 Consensus size: 186
1030603 GAATGTGTCT
* ** * **
1030613 TGCTCTTTGAGGACTAAAGTGG-GCCACCAACTCGTGTACGTTTTGAAAAGAAAAAGGTGTCCTA
1 TGCTCTTTGAGGACTAAAG-GGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTA
1030677 CTCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTC
65 CTCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTC
* ***
1030742 TTTGAGCACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGTTATCC
130 TTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * *
1030799 TACTCTTTGGGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAATAAAAAGGCATCCTAC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTAC
* **
1030864 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGTTGTCCTGCTCT
66 TCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * *
1030929 TTGGGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTGAAAAGAAAAAGGCGTCC
131 TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * *
1030985 TACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGAAAAGGCATCCTAC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTAC
* * * * * *
1031050 TCTTTGAGGACAAAATGATGCCACCAACTCGTGTAGGCTTTGAAAAGAAAAAGGCATCTTGCTTT
66 TCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * *
1031115 TTGAGGACAAAAGGATGCCACCAA-------------TGAAAAGAAAAAGACGTCC
131 TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
1031158 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTAC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTAC
* * * *
1031223 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGATAAAGGCATCTTGCTCT
66 TCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
1031288 TTGAGGACAAAAGGATGCCACCAACTCGTATGGGCTTTGAAAAGAAAAATGCGTCC
131 TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * * * * * * *
1031344 TGCTTTTTTAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTCAAAAGGAAAAGACGTCTTGC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTAC
* * * *
1031409 TCTTTGAGGACTAAAA-GGTGCCACCAACTCATGTGGGCTTT-AAAAGGAAAAGGTGTCTTGCTC
66 TCTTTGAGGAC-AAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTC
* * * * *
1031472 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGAAAAGGCATCT
130 TTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
* * * **
1031529 TGTTTTTTGAGGACTAAAAGGGTGCCACCAACTCATATGGGCTTTGAAAAGAAAAAGGTGT-CTG
1 TGCTCTTTGAGGACT-AAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCT-
* * * * * * * * *
1031593 GCTCTTTAAGGACGAAAGGGTGCTACCAACTCATGTGGGCTTTAAAAAGGAAAAGGTGTCCTACT
64 ACTCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCT
1031658 CTTTGAGGAC
129 CTTTGAGGAC
1031668 AAAATGGCTA
Statistics
Matches: 760, Mismatches: 90, Indels: 37
0.86 0.10 0.04
Matches are distributed among these distances:
173 161 0.21
185 85 0.11
186 482 0.63
187 32 0.04
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (186 bp):
TGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCATCCTAC
TCTTTGAGGACAAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
Done.