genome.fa.s2282.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2282
Parameters: 2 7 7 80 10 50 1000
Length:  76827

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1199--1269	29	2.5	29	79	6	74	4	25	0	70	1.05
1223--1284	23	2.6	24	78	19	67	3	29	0	67	1.06
1228--1278	23	2.3	22	86	10	68	3	29	0	66	1.09
1207--1303	19	5.4	19	70	14	55	3	27	1	68	1.11
4459--4832	34	10.6	34	77	10	243	29	9	22	39	1.85
4461--4817	69	5.0	72	73	14	177	28	9	22	38	1.86
4501--4819	69	4.5	73	76	10	232	28	8	23	38	1.85
4543--4832	103	2.8	101	79	9	314	30	7	23	38	1.82
5087--5129	9	4.7	9	85	11	52	76	11	4	6	1.13
6681--6736	21	2.7	21	94	0	94	44	14	14	26	1.83
11084--11124	20	2.0	20	85	4	55	60	0	7	31	1.24
14233--14281	2	24.5	2	100	0	98	0	48	0	51	1.00
16508--16559	21	2.5	20	78	9	59	23	3	3	69	1.22
17912--17988	21	3.7	21	92	0	127	35	9	16	38	1.81
18046--18102	13	3.9	13	74	24	51	35	8	17	38	1.81
18059--18121	19	3.6	19	74	24	66	33	9	19	38	1.84
18026--18128	32	3.2	32	91	1	161	35	9	17	36	1.83
18146--18187	21	2.0	21	100	0	84	42	9	19	28	1.82
18174--18199	13	2.0	13	100	0	52	30	15	15	38	1.88
20727--20898	51	3.4	50	85	4	218	27	29	13	30	1.94
20829--21209	79	4.9	78	83	4	464	26	26	14	33	1.94
20829--21209	155	2.4	155	91	3	593	26	26	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21143--21309	51	3.3	49	83	1	163	26	25	15	32	1.96
21189--21309	51	2.4	51	90	0	188	27	27	15	29	1.96
22815--22863	25	1.9	25	87	4	71	75	2	0	22	0.90
23928--23967	20	2.0	20	95	0	71	47	5	12	35	1.63
23950--24028	39	2.0	39	85	0	104	43	3	11	41	1.59
24244--24371	67	1.9	66	85	4	177	38	9	19	32	1.84
24377--24576	94	2.2	92	82	3	231	43	8	15	33	1.76
31625--32980	27	47.4	28	87	5	790	22	16	34	26	1.95
31557--32532	64	16.6	56	82	10	663	20	18	33	27	1.96
31557--32379	32	27.5	30	86	4	762	18	18	33	28	1.95
32365--33019	273	2.4	273	91	2	1039	28	13	33	23	1.93
32362--33017	27	24.0	27	89	2	990	28	13	34	23	1.93
41453--41527	20	3.8	20	82	3	89	41	12	12	34	1.79
41450--41527	40	2.0	39	85	7	104	41	12	11	34	1.80
46784--46835	20	2.7	20	87	3	70	32	17	17	32	1.93
46779--46835	19	2.9	19	84	2	78	33	17	15	33	1.92
52234--52296	32	1.9	33	90	3	101	28	17	12	41	1.86
52261--52317	19	2.9	19	86	2	78	33	15	15	35	1.90
52362--52392	13	2.4	13	94	0	53	32	16	16	35	1.91
52346--52412	33	2.0	33	86	11	93	34	13	19	32	1.91
53046--53380	167	2.0	167	90	3	523	40	17	17	25	1.90
55349--55673	79	4.1	78	80	5	305	33	15	25	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55630--55705	28	2.7	28	87	0	107	26	22	30	21	1.99
55550--55854	107	2.9	105	78	11	256	30	14	27	27	1.95
55689--55955	51	5.2	50	86	7	358	30	10	27	31	1.91
55688--55955	102	2.6	101	93	1	437	30	10	27	30	1.91
58262--58335	20	3.7	19	78	7	76	43	12	17	27	1.84
58351--58380	13	2.3	13	94	0	51	40	16	16	26	1.90
61665--61710	18	2.6	18	83	10	58	41	0	0	58	0.98
61638--61793	72	2.2	71	84	7	192	37	0	1	59	1.13
61749--61791	19	2.2	20	80	19	56	27	0	4	67	1.10
61908--61939	3	10.7	3	100	0	64	34	0	0	65	0.93
62102--62152	2	25.5	2	100	0	102	50	0	0	49	1.00
67301--67325	6	4.2	6	100	0	50	16	16	48	20	1.82
69252--69293	16	2.6	17	77	11	52	45	0	0	54	0.99
69601--69631	15	2.1	15	94	5	55	64	0	0	35	0.94

Tables:   1

The End!