Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2284
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24259
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Found at i:2537 original size:21 final size:23
Alignment explanation
Indices: 2503--2547 Score: 76
Period size: 21 Copynumber: 2.0 Consensus size: 23
2493 ATTCTGTCTT
2503 TTTTTTCCAGATGTATCGATACA
1 TTTTTTCCAGATGTATCGATACA
2526 TTTTTT-CA-ATGTATCGATACA
1 TTTTTTCCAGATGTATCGATACA
2547 T
1 T
2548 CTAGTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 14 0.64
22 2 0.09
23 6 0.27
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.47
Consensus pattern (23 bp):
TTTTTTCCAGATGTATCGATACA
Found at i:5885 original size:1 final size:1
Alignment explanation
Indices: 5879--5930 Score: 77
Period size: 1 Copynumber: 52.0 Consensus size: 1
5869 AAAGTGTTTG
***
5879 AAAAAAAAAAAAAAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
5931 TTTAATGTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.94, C:0.00, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:5900 original size:19 final size:19
Alignment explanation
Indices: 5876--5932 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
5866 GATAAAGTGT
5876 TTGAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAA
5895 TTGAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAA
*
5914 --AAAAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAAAA
5931 TT
1 TT
5933 TAATGTATCG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
17 16 0.46
19 19 0.54
ACGTcount: A:0.86, C:0.00, G:0.04, T:0.11
Consensus pattern (19 bp):
TTGAAAAAAAAAAAAAAAA
Found at i:5960 original size:21 final size:21
Alignment explanation
Indices: 5934--5990 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
5924 AAAAAAATTT
5934 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
5955 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
5976 AATGTATCGATACAT
1 AATGTATCGATACAT
5991 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:6070 original size:19 final size:19
Alignment explanation
Indices: 6046--6113 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
6036 AATTCAACAA
6046 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
6065 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
6080 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
6097 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
6114 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:6085 original size:13 final size:13
Alignment explanation
Indices: 6067--6091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6057 ACATAAGTTT
6067 TGTATCGATACAA
1 TGTATCGATACAA
6080 TGTATCGATACA
1 TGTATCGATACA
6092 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6089 original size:32 final size:32
Alignment explanation
Indices: 6048--6110 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
6038 TTCAACAATT
*
6048 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
6080 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
6111 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:6171 original size:13 final size:13
Alignment explanation
Indices: 6153--6178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6143 CATTTTTCTG
6153 TGTATCGATACAT
1 TGTATCGATACAT
6166 TGTATCGATACAT
1 TGTATCGATACAT
6179 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6175 original size:33 final size:33
Alignment explanation
Indices: 6133--6199 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
6123 GCCAAGGAAA
***
6133 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
6166 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
6199 T
1 T
6200 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:8720 original size:52 final size:52
Alignment explanation
Indices: 8647--9028 Score: 261
Period size: 52 Copynumber: 7.3 Consensus size: 52
8637 TTATTTTCGA
*
8647 GGGGATACTCCAACTCCGGTTTTATCGTT-AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGGTTTTAT-GTTCAAAACACCAATTTTTCCACAATC
* * **
8699 GGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTATGTTCAAAACACCAATTTTTCC-ACAATC
* *
8751 GGGGATACTCCAACTCCGATTTTAT-TTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGGTTTTATGTT-C-AAAACACCAATTTTTCCACAATC
* * *** * * *** **
8803 GAGGATACTCCAAC-CTCGTTATTTCATCG-GGGATACTCCAACCCCGTT--ACTTTC
1 GGGGATACTCCAACTC-CGGT-TTT-AT-GTTCAAAACACCAA--TTTTTCCACAATC
*
8857 GAGGGGATACTCCAACTCCGGTTTTATCGTT-AAAACACTAATTTTTCCACAATC
1 --GGGGATACTCCAACTCCGGTTTTAT-GTTCAAAACACCAATTTTTCCACAATC
* * **
8911 GGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTATGTTCAAAACACCAATTTTTCC-ACAATC
* *
8963 GGGGATACTCCAACTCCGATTTTAT-TTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGGTTTTATGTT-C-AAAACACCAATTTTTCCACAATC
*
9015 GAGGATACTCCAAC
1 GGGGATACTCCAAC
9029 CTCGTTATTT
Statistics
Matches: 257, Mismatches: 46, Indels: 54
0.72 0.13 0.15
Matches are distributed among these distances:
51 27 0.11
52 147 0.57
53 33 0.13
54 28 0.11
55 5 0.02
56 16 0.06
57 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (52 bp):
GGGGATACTCCAACTCCGGTTTTATGTTCAAAACACCAATTTTTCCACAATC
Found at i:8800 original size:104 final size:103
Alignment explanation
Indices: 8647--9027 Score: 402
Period size: 104 Copynumber: 3.6 Consensus size: 103
8637 TTATTTTCGA
* * *
8647 GGGGATACTCCAACTCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTATC-TTAAAACACCAATTTTTCCACAATCGAGGATACTCCAA
8712 TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
65 TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
*
8751 GGGGATACTCCAACTCCGATTTTAT-TTCCAAAAATACCAATTTTT-CACAATCGAGGATACTCC
1 GGGGATACTCCAACTCCGATTTTATCTT---AAAACACCAATTTTTCCACAATCGAGGATACTCC
* * * * ** * *
8814 AA-CCTCG--TTATTTCATCGGGGATACTCCAA--CCCCGTTACTTTC
63 AATCCTGGTTTTATTT--TC---AAAACGCCAATTTTCCTTTA--ATC
* * *
8857 GAGGGGATACTCCAACTCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 --GGGGATACTCCAACTCCGATTTTATC-TTAAAACACCAATTTTTCCACAATCGAGGATACTCC
8922 AATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
63 AATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
*
8963 GGGGATACTCCAACTCCGATTTTAT-TTCCAAAAATACCAATTTTT-CACAATCGAGGATACTCC
1 GGGGATACTCCAACTCCGATTTTATCTT---AAAACACCAATTTTTCCACAATCGAGGATACTCC
9026 AA
63 AA
9028 CCTCGTTATT
Statistics
Matches: 226, Mismatches: 28, Indels: 46
0.75 0.09 0.15
Matches are distributed among these distances:
101 6 0.03
102 4 0.02
103 6 0.03
104 91 0.40
105 26 0.12
106 18 0.08
107 13 0.06
108 48 0.21
109 6 0.03
110 2 0.01
111 6 0.03
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (103 bp):
GGGGATACTCCAACTCCGATTTTATCTTAAAACACCAATTTTTCCACAATCGAGGATACTCCAAT
CCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
Found at i:8836 original size:28 final size:30
Alignment explanation
Indices: 8800--8872 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 30
8790 ATTTTTCACA
* *
8800 ATCGAGGATACTCCAACCTCGTTA-TTTC-
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
8828 ATCGGGGATACTCCAACCCCGTTACTTTCG
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
8858 A--GGGGATACTCCAAC
1 ATCGGGGATACTCCAAC
8873 TCCGGTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 36 0.88
29 4 0.10
30 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCGTTACTTTCG
Found at i:8914 original size:212 final size:212
Alignment explanation
Indices: 8532--9095 Score: 1004
Period size: 212 Copynumber: 2.6 Consensus size: 212
8522 AATTCTCCAC
* * *
8532 AATCGAGGATATTCCAACTCCGATTTTATTTCCAAAAAAAATACCAATTTCTTCACAATCGGGGA
1 AATCGGGGATACTCCAACTCCGATTTTATTTCC---AAAAATACCAATTT-TTCACAATCGAGGA
* * *
8597 TACTCCAACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAC
62 TACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAAC
8661 TCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTT
127 TCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTT
8726 TCAAAACGCCAATTTTCCTTT
192 TCAAAACGCCAATTTTCCTTT
8747 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
8812 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
66 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
8877 GTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAA
131 GTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAA
8942 AACGCCAATTTTCCTTT
196 AACGCCAATTTTCCTTT
8959 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
* *
9024 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCG
66 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
*
9089 GCTTTAT
131 GTTTTAT
9096 TCCCAAAATA
Statistics
Matches: 339, Mismatches: 9, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
211 28 0.08
212 280 0.83
215 31 0.09
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (212 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
GTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAA
AACGCCAATTTTCCTTT
Found at i:9048 original size:28 final size:28
Alignment explanation
Indices: 9012--9088 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
9002 ATTTTTCACA
* * *
9012 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
9040 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
9068 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
9089 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:21627 original size:1 final size:1
Alignment explanation
Indices: 21621--21707 Score: 120
Period size: 1 Copynumber: 87.0 Consensus size: 1
21611 CCTTCTCTTC
* * *
21621 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAACAAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
21686 AAAAAAAAGAGAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAA
21708 CCTACTTAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 74 1.00
ACGTcount: A:0.93, C:0.03, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:23075 original size:53 final size:54
Alignment explanation
Indices: 22664--23816 Score: 1645
Period size: 53 Copynumber: 21.4 Consensus size: 54
22654 TCTCCTTCCG
* *
22664 CTTTTAGTCCTC-AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
22717 -TTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* * *
22771 -TTTCCATTCCAGTCTCAACGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTT-CAGT-C---CTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
22829 CCTTTCAGTCCCCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
22884 -TTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
22938 CTTTCAGTCCTCAAAGAGCAGGACACCTCTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTC-TCAAAGCCCACACAAGTTGGTGGCA
22993 CCTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
23048 -TTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
23101 CCTTTCAGTCCTCAAAGAGCAGGACACCT-TCAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* *
23155 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
23210 -TTTCCAGTCCTCAAAGAGCAGGACACCT-TCAAAGCCCACACAAGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* *
23263 TTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
23317 CCTTT---TCCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGT-CCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
23369 TTTTCAGTCCTCAAAGAGCAGGACACCT-TCAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* *
23422 -TTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
23475 CCTTTCAGTCC-CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGG--
1 -CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
23527 CTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACAC-AGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
*
23581 -TTTCCAGTCCTCAAAGA-CAGGACACCTTTCAAAGCCCACAC-AGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* *
23633 TTTTCCAGT-CTCAAAGAGCAGGACACCTCTTAAAGCCCACAC-AGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
23686 CCTTCATTCCCCAAAGAGCAGGACA-CTTTCAAAG-CCACACAAGTGGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* * *
23738 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
* * *
23793 CTTTTTACTCCTCAATGAGCAGGA
1 C-TTTCAGTCCTCAAAGAGCAGGA
23817 TACAATTTTT
Statistics
Matches: 1019, Mismatches: 43, Indels: 74
0.90 0.04 0.07
Matches are distributed among these distances:
51 13 0.01
52 133 0.13
53 327 0.32
54 274 0.27
55 194 0.19
56 29 0.03
58 43 0.04
59 3 0.00
60 3 0.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (54 bp):
CTTTCAGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCA
Done.