genome.fa.s2285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2285
Parameters: 2 7 7 80 10 50 1000
Length:  107154

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2735--2787	3	17.7	3	100	0	106	67	0	0	32	0.91
3072--3110	17	2.2	19	90	9	64	56	0	2	41	1.13
3133--3183	5	10.0	5	75	12	50	37	1	0	60	1.08
4065--4124	13	4.7	13	78	12	61	41	0	0	58	0.98
4065--4124	26	2.3	26	86	8	79	41	0	0	58	0.98
4884--4935	2	26.5	2	92	3	88	48	0	51	0	1.00
5213--5248	19	1.9	20	88	11	58	55	0	0	44	0.99
5185--5256	33	2.3	29	76	11	72	54	0	0	45	0.99
5764--5872	35	3.1	34	75	22	102	54	0	2	43	1.15
5993--6033	20	2.0	21	90	9	66	53	0	0	46	1.00
6948--6999	16	3.2	16	88	0	77	50	0	0	50	1.00
7067--7106	2	20.0	2	100	0	80	50	0	0	50	1.00
8885--8936	22	2.5	20	78	6	59	42	13	0	44	1.44
8924--8963	21	1.9	21	85	10	55	35	27	0	37	1.57
9153--9229	30	2.6	30	80	12	86	53	5	10	31	1.57
10222--10265	2	21.5	2	90	4	70	45	2	2	50	1.27
13840--13907	10	6.5	11	69	27	51	27	0	0	72	0.85
13846--13907	17	3.7	16	76	18	63	27	0	0	72	0.85
13861--13907	12	4.2	12	81	13	64	25	0	0	74	0.82
13850--13902	23	2.4	22	87	9	72	28	0	0	71	0.86
16085--16184	50	2.0	50	100	0	200	34	22	14	30	1.93
20374--20438	34	1.9	34	84	6	87	35	23	4	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26578--26657	32	2.5	32	89	0	124	27	11	15	46	1.79
26608--26726	52	2.3	52	83	0	148	30	12	13	43	1.81
27729--27811	39	2.1	39	93	0	139	37	10	13	38	1.79
28124--28148	13	1.9	13	100	0	50	32	16	16	36	1.90
28136--28189	20	2.5	22	82	5	67	40	14	16	27	1.88
28222--28289	33	2.1	32	88	2	100	35	20	13	30	1.91
31904--31928	13	1.9	13	100	0	50	36	16	16	32	1.90
31991--32015	13	1.9	13	100	0	50	32	16	16	36	1.90
32004--32152	52	2.9	51	91	4	244	32	19	17	30	1.95
45944--46058	1	115.0	1	77	0	104	87	8	1	1	0.67
45944--46056	39	2.8	38	85	10	145	87	8	1	1	0.68
47497--47793	30	10.1	30	73	10	166	29	30	15	24	1.96
47621--47760	30	4.9	29	83	6	169	32	29	16	21	1.95
47621--47789	85	2.0	86	80	4	189	31	29	17	21	1.96
47780--47991	52	4.2	52	75	13	199	24	25	16	33	1.96
47795--47884	43	2.1	43	91	0	144	26	25	17	30	1.98
48752--48776	13	1.9	13	100	0	50	36	16	16	32	1.90
48852--49000	52	2.9	51	88	4	226	33	18	17	30	1.94
53866--53912	21	2.2	21	85	7	60	48	21	23	6	1.72
59112--59173	1	62.0	1	78	0	52	87	3	6	3	0.75
59126--59173	11	4.5	11	84	5	62	89	4	4	2	0.64
59126--59173	21	2.3	21	88	0	69	89	4	4	2	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61116--61154	20	2.0	20	85	9	55	30	2	0	66	1.05
65103--65166	13	4.9	13	82	0	83	32	12	17	37	1.87
65103--65166	26	2.5	26	97	0	119	32	12	17	37	1.87
66970--67014	22	2.0	22	87	8	65	35	2	28	33	1.70
67631--67698	33	2.1	33	86	8	95	35	19	13	32	1.90
73960--74013	22	2.5	21	79	8	63	31	0	1	66	1.02
73958--74016	23	2.7	23	77	15	70	33	0	1	64	1.04
78202--78251	26	1.9	26	84	8	66	64	2	0	34	1.05
78219--78285	22	2.9	22	82	10	73	64	1	1	32	1.12
78699--78764	29	2.2	29	81	2	78	43	6	9	40	1.61
83993--84033	21	2.0	21	90	0	64	53	2	0	43	1.13
84983--85039	26	2.1	28	84	12	75	56	3	0	40	1.17
85347--85400	2	27.0	2	100	0	108	50	0	0	50	1.00
88126--88158	15	2.1	16	88	5	50	66	0	0	33	0.92
89437--89475	21	1.9	20	85	15	53	41	10	5	43	1.61
93013--93067	24	2.4	24	79	14	62	65	1	3	29	1.20
96390--96530	74	1.9	74	84	4	187	53	0	3	41	1.23
98064--98116	4	14.2	4	77	15	60	0	22	0	77	0.77
98064--98116	11	5.1	11	76	21	60	0	22	0	77	0.77
98064--98116	7	7.1	8	83	8	60	0	22	0	77	0.77
103677--103805	52	2.5	52	92	0	222	28	18	18	34	1.95
103677--103825	52	2.9	52	88	2	219	30	18	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103891--103988	19	5.9	17	72	27	86	37	16	12	33	1.86
103886--103985	32	3.1	32	95	2	175	37	17	12	34	1.86
103910--103966	13	3.9	13	76	24	60	33	17	14	35	1.90

Tables:   1

The End!