genome.fa.s2286.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2286
Parameters: 2 7 7 80 10 50 1000
Length:  36661

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474--533	32	1.9	32	89	3	95	16	16	38	28	1.91
562--723	86	1.9	85	91	6	265	22	19	25	32	1.98
479--706	57	3.9	57	78	10	210	18	19	28	32	1.96
477--729	28	8.7	28	73	14	174	19	18	30	31	1.96
2371--2498	1	128.0	1	74	0	94	3	3	7	85	0.79
2371--2498	30	4.3	29	77	17	120	3	3	7	85	0.79
2372--2488	22	5.2	22	81	14	114	3	3	6	86	0.78
5809--5875	33	2.0	33	88	0	98	34	11	13	40	1.81
5829--5853	13	1.9	13	100	0	50	36	16	16	32	1.90
5916--5940	13	1.9	13	100	0	50	32	16	16	36	1.90
5949--6072	52	2.4	52	94	1	214	35	18	17	28	1.94
11534--11558	13	1.9	13	100	0	50	32	16	16	36	1.90
11511--11576	33	2.0	33	90	0	105	30	16	16	36	1.91
14426--14462	19	1.9	19	88	0	56	51	0	5	43	1.24
14458--14499	19	2.2	19	87	8	59	59	0	2	38	1.10
14470--14510	13	3.3	13	90	6	59	63	0	0	36	0.95
15104--15235	61	2.2	57	81	15	151	34	6	6	52	1.53
16451--16503	3	17.7	3	100	0	106	32	0	0	67	0.91
19716--19916	86	2.3	86	93	2	334	36	16	18	28	1.92
19889--19952	33	2.0	32	90	3	101	39	20	9	31	1.84
24778--24803	13	2.0	13	100	0	52	30	15	15	38	1.88
24758--24821	33	2.0	33	90	3	103	26	14	17	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24851--24925	20	3.7	20	83	5	80	30	16	13	40	1.86
27349--27387	13	3.0	13	96	0	69	35	15	17	30	1.91
27374--27452	20	3.7	20	73	18	68	40	15	16	27	1.88
33563--33588	13	2.0	13	100	0	52	30	15	15	38	1.88
33543--33606	33	2.0	33	90	3	103	26	14	17	42	1.87
35230--35263	8	4.2	8	100	0	68	14	0	23	61	1.33
35609--35649	22	2.0	20	86	13	57	31	21	4	41	1.74
35911--35952	20	2.0	21	90	4	68	19	47	28	4	1.69

Tables:   1

The End!