Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2288
Parameters: 2 7 7 80 10 50 1000
Length:  23753

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1351--1375
2
12.5
2
100
0
50
52
0
0
48
1.00
3253--3302
23
2.2
22
82
6
64
36
10
8
46
1.67
3447--3503
23
2.5
23
82
2
71
42
5
3
49
1.42
4130--4166
12
3.0
13
80
11
51
64
0
0
35
0.94
5074--5143
9
7.9
9
79
17
76
42
0
0
57
0.99
5072--5151
36
2.2
36
100
0
160
45
0
0
55
0.99
5276--5314
16
2.5
16
91
4
62
38
0
0
61
0.96
5268--5318
15
3.6
14
82
10
59
43
0
0
56
0.99
5443--5479
14
2.4
16
82
8
51
70
0
0
29
0.88
5441--5478
16
2.4
16
86
8
51
73
0
0
26
0.83
5434--5478
18
2.6
17
83
13
56
68
0
0
31
0.89
5935--5989
23
2.3
25
85
14
73
43
1
3
50
1.30
5937--5998
23
2.7
22
79
13
72
46
1
3
48
1.28
6512--6546
17
2.1
16
89
5
52
42
0
8
48
1.33
7612--7659
21
2.3
21
75
3
53
31
4
2
62
1.26
7670--7737
16
4.2
16
70
20
52
44
1
0
54
1.09
8199--8241
2
22.5
2
86
9
63
46
0
2
51
1.13
8199--8241
17
2.5
17
88
0
68
46
0
2
51
1.13
8203--8239
19
1.9
19
94
0
65
45
0
2
51
1.15
9361--9450
28
3.1
29
69
21
73
55
2
0
42
1.12
9641--9685
17
2.6
17
89
6
65
35
0
0
64
0.94
10279--10368
8
10.1
8
69
23
56
56
2
0
41
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10270--10325
29
1.9
29
85
7
78
58
3
0
37
1.15
10224--10377
11
14.7
11
70
17
62
60
2
0
37
1.11
10261--10392
20
7.0
20
71
23
58
59
3
0
37
1.13
10757--10821
23
2.8
25
79
11
66
52
1
0
46
1.10
11136--11180
21
2.2
20
84
4
54
64
0
0
35
0.94
11132--11219
27
3.4
27
73
9
76
59
0
1
39
1.05
11454--11499
18
2.5
19
77
22
53
50
0
0
50
1.00
14075--14154
34
2.3
35
80
8
90
46
0
0
53
1.00
14518--14577
21
3.0
20
69
18
52
48
0
0
51
1.00
15635--15695
20
3.0
20
85
4
77
57
0
0
42
0.98
15748--15788
22
1.9
21
85
5
55
31
4
2
60
1.30
15755--15813
11
5.1
11
75
22
50
38
1
0
59
1.08
15772--15823
11
4.4
12
80
17
56
44
0
0
55
0.99
15768--15826
24
2.5
25
86
8
79
44
0
0
55
0.99
15781--15840
23
2.6
23
74
12
68
45
0
0
55
0.99
16122--16209
39
2.3
37
79
11
97
47
4
0
47
1.22
16504--16547
2
22.0
2
95
0
79
47
0
2
50
1.13
16691--16735
21
2.2
20
84
11
56
57
0
0
42
0.98
18735--18786
16
3.2
16
72
20
54
48
0
0
51
1.00
18717--18786
32
2.2
32
84
5
88
48
0
0
51
1.00
18986--19033
20
2.4
21
80
13
57
66
0
0
33
0.92
23058--23091
2
17.0
2
100
0
68
50
0
50
0
1.00

Tables:   1

The End!