genome.fa.s2293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2293
Parameters: 2 7 7 80 10 50 1000
Length:  86217

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6952--6979	13	2.2	13	100	0	56	39	17	14	28	1.89
6934--6999	33	2.0	33	88	5	98	40	13	15	30	1.85
15926--15955	13	2.3	13	100	0	60	36	13	16	33	1.88
15905--15972	33	2.1	32	86	10	93	36	16	14	32	1.89
16001--16053	20	2.7	19	88	5	79	37	16	13	32	1.88
16042--16066	13	1.9	13	100	0	50	32	16	16	36	1.90
16023--16087	32	2.0	32	85	8	87	40	15	13	30	1.86
17965--18104	65	2.2	65	89	0	208	34	22	7	36	1.81
17883--18197	158	2.0	158	81	4	377	33	22	9	34	1.87
18051--18224	93	1.9	93	86	2	251	31	24	12	32	1.92
18878--18948	20	3.5	20	80	3	97	35	14	19	30	1.91
18896--18971	21	3.7	21	76	3	91	40	11	18	28	1.86
18878--18971	41	2.3	41	96	0	170	38	12	19	29	1.89
19010--19035	13	2.0	13	100	0	52	38	15	15	30	1.88
23099--23129	15	2.1	15	93	0	53	48	16	22	12	1.80
25140--25219	20	3.8	20	75	15	79	26	15	15	43	1.85
25205--25243	13	3.0	13	96	0	69	30	17	15	35	1.91
27700--27770	20	3.5	20	80	3	97	35	14	19	30	1.91
27718--27793	21	3.7	21	76	3	91	40	11	18	28	1.86
27700--27793	41	2.3	41	96	0	170	38	12	19	29	1.89
27832--27857	13	2.0	13	100	0	52	38	15	15	30	1.88
30151--30222	20	3.7	19	88	3	81	27	15	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30170--30223	20	2.8	20	91	2	83	29	12	18	38	1.88
30268--30298	13	2.4	13	94	0	53	35	16	12	35	1.87
30252--30318	33	2.0	32	88	11	100	35	13	17	32	1.89
31087--31116	13	2.3	13	100	0	60	36	13	16	33	1.88
31162--31234	20	3.7	19	87	7	85	39	17	13	28	1.88
31820--31875	28	2.0	28	96	0	103	41	21	5	32	1.76
33688--33713	13	2.0	13	100	0	52	38	15	15	30	1.88
39833--39901	33	2.1	32	84	10	86	39	14	11	34	1.82
39931--40002	20	3.7	19	87	7	83	38	16	15	29	1.89
41569--41698	48	2.7	48	84	8	156	37	11	14	36	1.83
43500--43855	155	2.3	154	78	8	350	39	18	16	25	1.91
44004--44340	138	2.4	140	81	7	407	45	10	9	35	1.71
45447--45486	20	2.0	20	90	0	62	52	0	7	40	1.30
48000--48051	27	2.0	27	88	3	79	17	17	42	23	1.89
50192--50312	52	2.3	52	97	0	224	28	18	18	34	1.94
50192--50332	52	2.7	51	90	4	212	30	17	18	33	1.94
50321--50345	13	1.9	13	100	0	50	36	16	16	32	1.90
50411--50435	13	1.9	13	100	0	50	32	16	16	36	1.90
50389--50455	33	2.0	33	88	0	98	40	13	11	34	1.81
51426--51559	43	2.9	45	86	8	191	31	18	23	26	1.98
51383--51569	49	3.9	49	82	10	233	33	17	23	26	1.96
51382--51559	92	1.9	94	93	3	306	32	17	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51621--51725	52	2.0	52	83	5	129	35	17	22	24	1.95
51584--51725	55	2.6	55	78	3	155	33	16	23	26	1.96
51245--51731	266	1.8	266	96	0	902	35	15	24	24	1.94
51798--52239	34	12.9	34	85	7	512	33	11	33	20	1.89
51785--52240	71	6.6	70	85	8	559	32	11	34	21	1.89
52956--52997	16	2.6	16	84	0	57	0	7	9	83	0.81
57977--58028	27	2.0	27	88	3	79	17	17	42	23	1.89
60169--60289	52	2.3	52	97	0	224	28	18	18	34	1.94
60169--60309	52	2.7	51	90	4	212	30	17	18	33	1.94
60298--60322	13	1.9	13	100	0	50	36	16	16	32	1.90
60388--60412	13	1.9	13	100	0	50	32	16	16	36	1.90
60366--60432	33	2.0	33	88	0	98	40	13	11	34	1.81
60742--61002	47	5.6	47	78	4	240	42	17	19	20	1.90
60742--61003	141	1.9	140	81	6	323	41	17	19	20	1.90
60749--61002	94	2.7	94	80	2	269	41	17	19	20	1.90
60973--61084	35	3.2	35	84	0	134	45	13	17	23	1.84
60993--61104	35	3.2	35	84	0	143	42	11	20	25	1.85
62410--62455	20	2.3	20	88	7	67	2	15	0	82	0.76
62415--62457	18	2.4	17	88	11	68	0	13	0	86	0.58
68123--68493	155	2.4	154	80	2	393	40	20	15	23	1.90
68689--68950	137	1.9	139	85	4	361	45	9	9	35	1.70
68622--68978	139	2.6	139	78	7	402	45	10	12	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68697--68988	137	2.1	139	81	5	333	46	9	10	33	1.70
70025--70069	20	2.2	20	84	11	56	8	15	6	68	1.36
70229--70258	15	2.0	15	100	0	60	73	0	0	26	0.84
70842--70904	33	1.9	33	90	6	101	36	14	15	33	1.88
77078--77104	13	2.1	13	100	0	54	29	14	14	40	1.86
79435--79491	20	2.9	20	84	10	73	29	17	15	36	1.91

Tables:   1

The End!