genome.fa.s2299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2299
Parameters: 2 7 7 80 10 50 1000
Length:  40260

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124--202	32	2.5	28	76	23	77	51	3	1	43	1.27
135--200	33	1.9	33	88	11	98	51	4	0	43	1.22
148--202	19	2.9	19	72	17	51	52	5	0	41	1.24
135--215	35	2.3	35	83	16	96	50	4	0	44	1.23
17782--17914	51	2.6	51	91	0	212	39	11	17	31	1.85
18863--19279	32	13.0	31	81	7	433	23	19	29	27	1.98
18847--19279	64	6.8	64	84	5	495	24	18	30	27	1.98
19305--19749	27	14.8	32	74	13	259	33	12	32	21	1.91
19280--19553	59	4.6	59	88	0	377	32	11	32	24	1.91
19456--19648	87	2.2	87	86	0	262	34	13	30	21	1.92
19569--19749	33	5.8	32	80	9	185	35	14	32	17	1.90
19542--19746	60	3.4	59	82	6	223	36	14	31	17	1.90
20677--20702	13	2.0	13	100	0	52	30	15	15	38	1.88
21252--21299	23	2.1	23	92	3	80	37	29	0	33	1.58
22489--22534	24	1.9	25	82	8	60	6	17	47	28	1.72
22988--23012	13	1.9	13	100	0	50	32	20	16	32	1.94
29136--29187	20	2.7	20	85	8	72	26	15	19	38	1.91
29257--29281	13	1.9	13	100	0	50	36	16	16	32	1.90
29240--29302	33	1.9	32	87	3	90	30	15	20	33	1.94
29923--29950	13	2.2	13	100	0	56	25	21	14	39	1.91
30625--30651	13	2.1	13	100	0	54	29	14	14	40	1.86
30606--30670	32	2.0	32	90	3	103	29	15	15	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30635--30692	19	3.1	18	88	11	89	34	15	17	32	1.91
30636--30691	20	2.8	20	92	7	89	32	16	17	33	1.92
30720--30773	20	2.7	20	88	5	74	29	12	20	37	1.90
33234--33272	15	2.6	15	91	0	60	17	12	41	28	1.87
37190--37228	13	3.0	13	92	0	69	30	12	15	41	1.85

Tables:   1

The End!