Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold23
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3125668
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.28
Warning! 362582 characters in sequence are not A, C, G, or T
File 6 of 18
Found at i:783362 original size:65 final size:65
Alignment explanation
Indices: 783284--783419 Score: 211
Period size: 65 Copynumber: 2.1 Consensus size: 65
783274 TAATTCTGGG
*
783284 TAATAAGGTGAATTTAGGATTAAAACTGAA-GGATTTGTAAAAGGCTTAAATTGATTTTTTTAAT
1 TAATTAGGTGAATTTAGGATT-AAACTGAAGGGATTTGTAAAAGGCTTAAATTGATTTTTTTAAT
783348 A
65 A
* * *
783349 TAATTAGGTGAATTTTGGATTAAAGTTAAGGGATTTGTAAAAGGCTTAAATTGATTTTTTTAATA
1 TAATTAGGTGAATTTAGGATTAAACTGAAGGGATTTGTAAAAGGCTTAAATTGATTTTTTTAATA
*
783414 TGATTA
1 TAATTA
783420 AATTGATTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 6 0.09
65 59 0.91
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.41
Consensus pattern (65 bp):
TAATTAGGTGAATTTAGGATTAAACTGAAGGGATTTGTAAAAGGCTTAAATTGATTTTTTTAATA
Found at i:783432 original size:22 final size:23
Alignment explanation
Indices: 783394--783441 Score: 89
Period size: 22 Copynumber: 2.1 Consensus size: 23
783384 TGTAAAAGGC
783394 TTAAATTGATTTTTTTAATATGA
1 TTAAATTGATTTTTTTAATATGA
783417 TTAAATTGA-TTTTTTAATATGA
1 TTAAATTGATTTTTTTAATATGA
783439 TTA
1 TTA
783442 GGACTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (23 bp):
TTAAATTGATTTTTTTAATATGA
Found at i:790296 original size:20 final size:19
Alignment explanation
Indices: 790267--790341 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
790257 AAAAAGACAT
790267 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
790286 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
*
790307 CATGTATCGAT-CTATTGAAA
1 AATGTATCGATAC-ATTG-AA
790327 AATGTATCGATACAT
1 AATGTATCGATACAT
790342 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.02
20 41 0.91
21 3 0.07
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:790324 original size:40 final size:39
Alignment explanation
Indices: 790264--790341 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
790254 GGTAAAAAGA
*
790264 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
*
790303 CATACATGTATCGAT-CTATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATAC-ATTGAAAAATATATCGATACAT
790342 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
39 5 0.14
40 30 0.86
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:791059 original size:29 final size:29
Alignment explanation
Indices: 790914--791473 Score: 834
Period size: 29 Copynumber: 19.5 Consensus size: 29
790904 CACCAACTTG
* *
790914 TGTGGGCTTTGAAAATAGTTGCCAC-CACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT
*
790943 CGTGTGGGCTTTGAAAAGAGTGCCACAGACT
1 --TGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
790974 TATGGGCTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
791002 TGTGGGCTTTG-AAAG-GTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791029 TGTGGGCTTCGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791058 TGTGGGCTTTGAAAGGA-TGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
791086 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791115 TGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
791143 TGTGGGCTTTGAAAAGAGTGCCACTGACTT
1 TGTGGGCTTTGAAAAGAGTGCCACTGAC-T
*
791173 TATGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
791202 TGTGGGCTTTG-AAAGAGTGCCACTGAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTG-ACT
* *
791231 TGTGGTCTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
791259 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791288 TGTGGGCTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791316 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791345 TGTTGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
791374 TGTGGGCTTTGAAAGGAGTGCCATTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791403 TGTAGGCTTTG-AAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791431 TGTGAGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACT
*
791460 TGTGAGCTTTGAAA
1 TGTGGGCTTTGAAA
791474 GGGATGAACA
Statistics
Matches: 488, Mismatches: 31, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
27 22 0.05
28 165 0.34
29 247 0.51
30 34 0.07
31 20 0.04
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACT
Found at i:791170 original size:86 final size:85
Alignment explanation
Indices: 790914--791476 Score: 828
Period size: 86 Copynumber: 6.5 Consensus size: 85
790904 CACCAACTTG
* * * * *
790914 TGTGGGCTTTGAAAATAGTTGCCAC-CACTCGTGTGGGCTTTGAAAAGAGTGCCACAGACTTATG
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTG-AAAGGGTGCCACTGACTTGTG
*
790978 GGCTTTGAAAGGGTGCCACTGACT
62 GGCTTTGAAAGAGTGCCACTGACT
* *
791002 TGTGGGCTTTG-AAAG-GTGCCACTGACTTGTGGGCTTCGAAAAGAGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGC
791065 TTTGAAAG-GATGCCACTGACT
65 TTTGAAAGAG-TGCCACTGACT
*
791086 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
791151 TTGAAAAGAGTGCCACTGACTT
66 TTG-AAAGAGTGCCACTGAC-T
* * *
791173 TATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAACTTGTGGTC
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTG-ACTTGTGGGC
*
791238 TTTGAAAGGGTGCCACTGACT
65 TTTGAAAGAGTGCCACTGACT
791259 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
*
791324 TTGAAAAGAGTGCCACTGATT
66 TTG-AAAGAGTGCCACTGACT
* * *
791345 TGTTGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCATTGACTTGTAGGC
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGC
791410 TTTGAAAGAGTGCCACTGACT
65 TTTGAAAGAGTGCCACTGACT
* *
791431 TGTGAGCTTTGAAAAGAGTGCCACTGACTTGTGAGCTTTGAAAGGG
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
791477 ATGAACATTC
Statistics
Matches: 440, Mismatches: 25, Indels: 23
0.90 0.05 0.05
Matches are distributed among these distances:
83 1 0.00
84 63 0.14
85 51 0.12
86 209 0.47
87 92 0.21
88 24 0.05
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (85 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
TTGAAAGAGTGCCACTGACT
Found at i:791474 original size:57 final size:57
Alignment explanation
Indices: 790914--791474 Score: 835
Period size: 57 Copynumber: 9.8 Consensus size: 57
790904 CACCAACTTG
* * *
790914 TGTGGGCTTTGAAAATAGTTGCCAC-CACTCGTGTGGGCTTTGAAAAGAGTGCCACAGACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTG-AAAGAGTGCCACTGACT
* *
790974 TATGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAG-GTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
*
791029 TGTGGGCTTCGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAG-TGCCACTGACT
* *
791086 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
*
791143 TGTGGGCTTTGAAAAGAGTGCCACTGACTTTATGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGAC-TTGTGGGCTTTG-AAAGAGTGCCACTGACT
* *
791202 TGTGGGCTTTG-AAAGAGTGCCACTGAACTTGTGGTCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTG-ACTTGTGGGCTTTGAAAGAGTGCCACTGACT
*
791259 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
* *
791316 TGTGGGCTTTGAAAAGAGTGCCACTGATTTGTTGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACT
* * *
791374 TGTGGGCTTTGAAAGGAGTGCCATTGACTTGTAGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
* *
791431 TGTGAGCTTTGAAAAGAGTGCCACTGACTTGTGAGCTTTGAAAG
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
791475 GGATGAACAT
Statistics
Matches: 463, Mismatches: 29, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
55 20 0.04
56 36 0.08
57 254 0.55
58 107 0.23
59 36 0.08
60 10 0.02
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (57 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
Found at i:792732 original size:17 final size:18
Alignment explanation
Indices: 792705--792744 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
792695 TTTTTTGCTA
792705 TTTTTTCTTGGTTT-TTT
1 TTTTTTCTTGGTTTATTT
792722 TGTTTTT-TTGGTTTATTT
1 T-TTTTTCTTGGTTTATTT
792740 TTTTT
1 TTTTT
792745 AATTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.03, C:0.03, G:0.12, T:0.82
Consensus pattern (18 bp):
TTTTTTCTTGGTTTATTT
Found at i:793539 original size:15 final size:15
Alignment explanation
Indices: 793519--793551 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
793509 AATTAATCTA
793519 GAGACATTAGCATAT
1 GAGACATTAGCATAT
793534 GAGACATTAGCATAT
1 GAGACATTAGCATAT
793549 GAG
1 GAG
793552 GCAGCCTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (15 bp):
GAGACATTAGCATAT
Found at i:806783 original size:20 final size:19
Alignment explanation
Indices: 806754--806828 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
806744 AAAAAGACAT
806754 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
806773 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
806794 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
806814 AATGTATCGATACAT
1 AATGTATCGATACAT
806829 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:806811 original size:40 final size:39
Alignment explanation
Indices: 806751--806828 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
806741 GGTAAAAAGA
*
806751 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
806790 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
806829 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:807125 original size:81 final size:80
Alignment explanation
Indices: 807027--807439 Score: 307
Period size: 79 Copynumber: 5.1 Consensus size: 80
807017 GGTGTCTACA
* * *
807027 GAGTATCCCCTCAAAAATGGTAAGGTTGGAGTATCCCTTGAGATAAAAAAATTTGATGTTTTAGA
1 GAGTATCCCCTCAAAAATGGTAGGGTTAGAGTATCCCTTGAGAT-AAAAAATTTAATGTTTTAGA
* * *
807092 AGTAAATATGGGGTTG
65 AGTAAAAACGAGGTTG
* * * * * * *
807108 GAGTATCCCCTCGAAAATGGTGGGGTTAGAGT-T-TCTTGAAGATGAAAATTTTAATATTTTTGA
1 GAGTATCCCCTCAAAAATGGTAGGGTTAGAGTATCCCTTG-AGATAAAAAATTTAATGTTTTAGA
*
807171 AGTAAAAACGGGGTTG
65 AGTAAAAACGAGGTTG
* ** * * ** * * * * *
807187 GAGTATCCTCTCGGAGATGGTAGGGTTGGAGTATCCCCAGAAATGAAAAATTCAGTGTTTGAGAA
1 GAGTATCCCCTCAAAAATGGTAGGGTTAGAGTATCCCTTGAGATAAAAAATTTAATGTTTTAGAA
* *
807252 ATAAAAACAAGGTTG
66 GTAAAAACGAGGTTG
* * ** * *
807267 GAGTATCCCCT-AAGAAATTGT-GGGTTAGAGGATCCCCAGAGATGAAAAAATTCAATGTCTTAA
1 GAGTATCCCCTCAA-AAATGGTAGGGTTAGAGTATCCCTTGAGAT-AAAAAATTTAATGT-TTTA
* *
807330 GAAAATAAAAATGAGGTTG
63 G-AAGTAAAAACGAGGTTG
* * * * **
807349 GAGTATCCCCTCAGACATGGTGGGGTTAAAGTAT-CCTTGGAGATAAAAAATTTGGTGTTTTAGA
1 GAGTATCCCCTCAAAAATGGTAGGGTTAGAGTATCCCTT-GAGATAAAAAATTTAATGTTTTAGA
* *
807413 AGTGAAAACAAGGGTTG
65 AGTAAAAACGA-GGTTG
*
807430 GTGTA-CCCCT
1 GAGTATCCCCT
807440 TTTGATGTTT
Statistics
Matches: 262, Mismatches: 59, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
79 79 0.30
80 76 0.29
81 47 0.18
82 44 0.17
83 16 0.06
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (80 bp):
GAGTATCCCCTCAAAAATGGTAGGGTTAGAGTATCCCTTGAGATAAAAAATTTAATGTTTTAGAA
GTAAAAACGAGGTTG
Found at i:807272 original size:80 final size:82
Alignment explanation
Indices: 807173--807384 Score: 250
Period size: 80 Copynumber: 2.6 Consensus size: 82
807163 ATTTTTGAAG
* * * * *
807173 TAAAAACGGGGTTGGAGTATCCTCTCGGAGATGGTAGGGTTGGAGTATCCCCAGAAATG-AAAAA
1 TAAAAACGAGGTTGGAGTATCCCCTCAGAAATGGT-GGGTTAGAGTATCCCCAGAAATGAAAAAA
* *
807237 TTCAGTGT-TTGAG-AAA
65 TTCAATGTCTTAAGAAAA
* * * * *
807253 TAAAAACAAGGTTGGAGTATCCCCTAAGAAATTGTGGGTTAGAGGATCCCCAGAGATGAAAAAAT
1 TAAAAACGAGGTTGGAGTATCCCCTCAGAAATGGTGGGTTAGAGTATCCCCAGAAATGAAAAAAT
807318 TCAATGTCTTAAGAAAA
66 TCAATGTCTTAAGAAAA
* * *
807335 TAAAAATGAGGTTGGAGTATCCCCTCAGACATGGTGGGGTTAAAGTATCC
1 TAAAAACGAGGTTGGAGTATCCCCTCAGAAATGGT-GGGTTAGAGTATCC
807385 TTGGAGATAA
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 20 0.18
80 40 0.37
81 4 0.04
82 33 0.30
83 12 0.11
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (82 bp):
TAAAAACGAGGTTGGAGTATCCCCTCAGAAATGGTGGGTTAGAGTATCCCCAGAAATGAAAAAAT
TCAATGTCTTAAGAAAA
Found at i:813430 original size:20 final size:21
Alignment explanation
Indices: 813393--813443 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
813383 TTTTACAATT
*
813393 TGTATCAATACAATAAGTGAA
1 TGTATCGATACAATAAGTGAA
*
813414 TGTATCGATAC-ATAAGTGAC
1 TGTATCGATACAATAAGTGAA
813434 TGTATCGATA
1 TGTATCGATA
813444 TATGTCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:813639 original size:52 final size:51
Alignment explanation
Indices: 813502--813640 Score: 172
Period size: 51 Copynumber: 2.7 Consensus size: 51
813492 TCTAGAATAA
* *
813502 AAATGTATCGATACATTTTTCATTGTATTGATACATTCTAGGTTTTGACCC
1 AAATGTATCGATACATTCTTCATTGTATAGATACATTCTAGGTTTTGACCC
* * * *
813553 AAATTTATCAATACATTCTTCATTGTAATA-ATACATTCTGGGTTTTTGACCT
1 AAATGTATCGATACATTCTTCATTGT-ATAGATACATTCTAGG-TTTTGACCC
* * *
813605 AAATGTATCGATATATTCTTCAATATATAGATACAT
1 AAATGTATCGATACATTCTTCATTGTATAGATACAT
813641 ATAGGGAATT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
51 37 0.50
52 37 0.50
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.42
Consensus pattern (51 bp):
AAATGTATCGATACATTCTTCATTGTATAGATACATTCTAGGTTTTGACCC
Found at i:820571 original size:12 final size:13
Alignment explanation
Indices: 820546--820570 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
820536 ATATTATTTT
820546 GTGATTTTTAAAA
1 GTGATTTTTAAAA
820559 GTGATTTTTAAA
1 GTGATTTTTAAA
820571 GCATAAATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
GTGATTTTTAAAA
Found at i:821081 original size:80 final size:79
Alignment explanation
Indices: 820982--821253 Score: 291
Period size: 80 Copynumber: 3.4 Consensus size: 79
820972 TTGGGGTTCA
* *
820982 AGTATCCCCTCAGAGATGGTGGGGTTAGAGTATACCCAGATATGTAAAATTCAATGTTTTGGAAG
1 AGTATCCCCTCAGAAATGGTGGGGTTAGAGTAT-CCCAGATATGTAAAATTCAATATTTTGGAAG
**
821047 TACGAACAAGGTTGG
65 TAAAAACAAGGTTGG
* * * * *
821062 AGTATCCCCTCAGAAATGGTAGGGGCTGGAGTATCCTC-GAAATGAAAAATTCAATATTTTAGAA
1 AGTATCCCCTCAGAAATGGT-GGGGTTAGAGTATCC-CAGATATGTAAAATTCAATATTTTGGAA
***
821126 GTAAAAATGGGGTAT-G
64 GTAAAAACAAGGT-TGG
* * * *
821142 AGTATCCCTTGA-AAATGGTGGGGTAAGAGTATCCCTAGATATATAAAATTCAATATTTTGGAAG
1 AGTATCCCCTCAGAAATGGTGGGGTTAGAGTATCCC-AGATATGTAAAATTCAATATTTTGGAAG
821206 TAAAAACAAGGTTGG
65 TAAAAACAAGGTTGG
* * *
821221 AGTATCCCCTC-GAAAATGATGGGATTTGAGTAT
1 AGTATCCCCTCAG-AAATGGTGGGGTTAGAGTAT
821254 TCTCGATGGT
Statistics
Matches: 154, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
77 1 0.01
78 13 0.08
79 49 0.32
80 78 0.51
81 13 0.08
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (79 bp):
AGTATCCCCTCAGAAATGGTGGGGTTAGAGTATCCCAGATATGTAAAATTCAATATTTTGGAAGT
AAAAACAAGGTTGG
Found at i:821267 original size:159 final size:160
Alignment explanation
Indices: 820997--821309 Score: 393
Period size: 159 Copynumber: 2.0 Consensus size: 160
820987 CCCCTCAGAG
* * * **
820997 ATGGTGGGGTTAGAGTATACCCAGATATGTAAAATTCAATGTTTTGGAAGTACGAACAAGGTTGG
1 ATGGTGGGGTAAGAGTATACCCAGATATATAAAATTCAATATTTTGGAAGTAAAAACAAGGTTGG
* * * *
821062 AGTATCCCCTCAGAAATGGTAGGGGCTGGAGTATCCTCGAAATGAAAAATTCAAT-ATTTTAGAA
66 AGTATCCCCTCAGAAATGATAGGGACTGGAGTATCCTCGAAATGAAAAATTCAATGATTTGAAAA
*
821126 GTAAAAATGGGGTAT-GAGTATCCCTTGAAA
131 GTAAAAACGGGGT-TGGAGTATCCCTTGAAA
821156 ATGGTGGGGTAAGAGTAT-CCCTAGATATATAAAATTCAATATTTTGGAAGTAAAAACAAGGTTG
1 ATGGTGGGGTAAGAGTATACCC-AGATATATAAAATTCAATATTTTGGAAGTAAAAACAAGGTTG
* * * ** * * *
821220 GAGTATCCCCTC-GAAAATGAT-GGGATTTGAGTATTCTCGATGGTGAAAAGTTCGATGCTTTGA
65 GAGTATCCCCTCAG-AAATGATAGGGACTGGAGTATCCTCGA-AATGAAAAATTCAATGATTTGA
821283 AAAGTAAAAACGGGGTTGGAGTATCCC
128 AAAGTAAAAACGGGGTTGGAGTATCCC
821310 CGAAGATAGA
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
158 19 0.15
159 85 0.65
160 27 0.21
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (160 bp):
ATGGTGGGGTAAGAGTATACCCAGATATATAAAATTCAATATTTTGGAAGTAAAAACAAGGTTGG
AGTATCCCCTCAGAAATGATAGGGACTGGAGTATCCTCGAAATGAAAAATTCAATGATTTGAAAA
GTAAAAACGGGGTTGGAGTATCCCTTGAAA
Found at i:821383 original size:81 final size:78
Alignment explanation
Indices: 821296--821497 Score: 260
Period size: 81 Copynumber: 2.5 Consensus size: 78
821286 GTAAAAACGG
821296 GGTTGGAGTATCCCCGAAGATAGAGAAATTTGATTTTTTGAAAGTGAAAACGGGGTTGGAGTATC
1 GGTTGGAGTATCCCCGAAGATAGA-AAATTTGATTTTTTG-AAGTGAAAAC-GGGTTGGAGTATC
*
821361 CCCTCGGAGATAGCAA
63 CCCTCGAAGATAGCAA
* *
821377 GTTTGGAGTATCCCCGAAGATAGAAATTTTTGATGTTTTTTGAAGTGAAAACGGGTTGGAGTATC
1 GGTTGGAGTATCCCCGAAGATAGAAA-ATTTGA--TTTTTTGAAGTGAAAACGGGTTGGAGTATC
* * *
821442 CCTTCGAAGATGGCGA
63 CCCTCGAAGATAGCAA
* * *
821458 GGTTGGAATATCCCCGAAAATGGAAAATTTTGATTTTTTG
1 GGTTGGAGTATCCCCGAAGATAGAAAA-TTTGATTTTTTG
821498 TGAAATAAAA
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
79 7 0.07
80 2 0.02
81 80 0.75
82 10 0.09
83 7 0.07
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (78 bp):
GGTTGGAGTATCCCCGAAGATAGAAAATTTGATTTTTTGAAGTGAAAACGGGTTGGAGTATCCCC
TCGAAGATAGCAA
Found at i:823200 original size:13 final size:13
Alignment explanation
Indices: 823182--823207 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
823172 CAATTTGGGA
823182 TGTATCGATACAT
1 TGTATCGATACAT
823195 TGTATCGATACAT
1 TGTATCGATACAT
823208 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:823364 original size:20 final size:19
Alignment explanation
Indices: 823341--823379 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
823331 TTGTGCATTA
823341 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
823361 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
823380 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:823946 original size:16 final size:16
Alignment explanation
Indices: 823927--823958 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
823917 CCTCAATAAA
*
823927 GCAATTTAACAATTTC
1 GCAAATTAACAATTTC
823943 GCAAATTAACAATTTC
1 GCAAATTAACAATTTC
823959 TTTTAATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (16 bp):
GCAAATTAACAATTTC
Found at i:825361 original size:21 final size:21
Alignment explanation
Indices: 825332--825372 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
825322 TGTGAGAGTG
*
825332 GGGGCTGCCCGGTTGCGACCTA
1 GGGGCTG-CCGGTCGCGACCTA
825354 GGGG-TGCCGGTCGCGACCT
1 GGGGCTGCCGGTCGCGACCT
825373 GGTGAGTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 2 0.11
22 4 0.22
ACGTcount: A:0.07, C:0.32, G:0.44, T:0.17
Consensus pattern (21 bp):
GGGGCTGCCGGTCGCGACCTA
Found at i:825672 original size:20 final size:21
Alignment explanation
Indices: 825642--825683 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
825632 CTATTTTTGT
825642 TGATGATTTTG-A-TGAAAAA
1 TGATGATTTTGAAGTGAAAAA
825661 TGATGTATTTTGAAGTGAAAAA
1 TGATG-ATTTTGAAGTGAAAAA
825683 T
1 T
825684 AAGAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 6 0.30
21 1 0.05
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (21 bp):
TGATGATTTTGAAGTGAAAAA
Found at i:825833 original size:13 final size:13
Alignment explanation
Indices: 825815--825852 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
825805 ATAAACCCTT
*
825815 TGTATCGATACAC
1 TGTATCGATACAA
825828 TGTATCGATACAA
1 TGTATCGATACAA
*
825841 TGTATCGTTACA
1 TGTATCGATACA
825853 GAGAATGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:827282 original size:34 final size:35
Alignment explanation
Indices: 827244--827310 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
827234 CCTTACAACA
827244 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
827278 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
827311 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:827807 original size:13 final size:13
Alignment explanation
Indices: 827789--827814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
827779 CTATTTATGA
827789 TGTATCGATACAC
1 TGTATCGATACAC
827802 TGTATCGATACAC
1 TGTATCGATACAC
827815 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:827938 original size:22 final size:22
Alignment explanation
Indices: 827884--827938 Score: 94
Period size: 21 Copynumber: 2.5 Consensus size: 22
827874 GTGAACAGTG
827884 TGAACAGTGATGCATCGATACA
1 TGAACAGTGATGCATCGATACA
*
827906 TGAA-AGTGATGTATCGATACA
1 TGAACAGTGATGCATCGATACA
827927 TGAACAGTGATG
1 TGAACAGTGATG
827939 AATAATGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25
Consensus pattern (22 bp):
TGAACAGTGATGCATCGATACA
Found at i:828096 original size:20 final size:20
Alignment explanation
Indices: 828033--828103 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
828023 GCCAATGACC
**
828033 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
828053 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
828073 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
828093 TGTATCGATAC
1 TGTATCGATAC
828104 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:828169 original size:21 final size:21
Alignment explanation
Indices: 828143--828183 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
828133 GTCAACCTTG
828143 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
828164 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
828184 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:833538 original size:20 final size:20
Alignment explanation
Indices: 833494--833543 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
833484 ACTAATCACC
*
833494 TGTATCGATACATCTTTGTA
1 TGTATCGATACATCTTGGTA
*
833514 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTTGGT-A
833534 TGTATCGATA
1 TGTATCGATA
833544 TAATGTATCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATCTTGGTA
Found at i:833590 original size:20 final size:19
Alignment explanation
Indices: 833567--833605 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
833557 CTGTACATTA
833567 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
833587 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
833606 ATTTTAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:834461 original size:12 final size:12
Alignment explanation
Indices: 834426--834491 Score: 52
Period size: 10 Copynumber: 5.7 Consensus size: 12
834416 GATAGTGTGC
834426 TATTTA-AAATA
1 TATTTATAAATA
*
834437 T-TTTATATTATA
1 TATTTATA-AATA
834449 TAATTT-TAAATA
1 T-ATTTATAAATA
834461 TATTTAT-AA-A
1 TATTTATAAATA
*
834471 TATTTATAAATT
1 TATTTATAAATA
834483 TATATTATA
1 TAT-TTATA
834492 TTTATATTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
10 12 0.27
11 10 0.23
12 12 0.27
13 7 0.16
14 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TATTTATAAATA
Found at i:834473 original size:24 final size:24
Alignment explanation
Indices: 834427--834473 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
834417 ATAGTGTGCT
*
834427 ATTTAAAATATTTTATATTATATA
1 ATTTAAAATATTTTATATAATATA
*
834451 ATTTTAAATATATTTATA-AATAT
1 ATTTAAAATAT-TTTATATAATAT
834474 TTATAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
ATTTAAAATATTTTATATAATATA
Found at i:834485 original size:8 final size:9
Alignment explanation
Indices: 834426--834530 Score: 67
Period size: 9 Copynumber: 11.6 Consensus size: 9
834416 GATAGTGTGC
*
834426 TATTTAAAA
1 TATTTATAA
834435 TATTT-T-A
1 TATTTATAA
834442 TATTATATAA
1 TATT-TATAA
*
834452 T-TTTAAATA
1 TATTTATA-A
834461 TATTTATAAA
1 TATTTAT-AA
834471 TATTTATAA
1 TATTTATAA
834480 -ATTTATATTA
1 TATTTATA--A
*
834490 TATTTATAT
1 TATTTATAA
* *
834499 TATTTTTTA
1 TATTTATAA
*
834508 TATTATATTA
1 TATT-TATAA
834518 TATTT-TAA
1 TATTTATAA
834526 TATTT
1 TATTT
834531 TACTATCATA
Statistics
Matches: 77, Mismatches: 9, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
7 5 0.06
8 18 0.23
9 23 0.30
10 23 0.30
11 8 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TATTTATAA
Found at i:834492 original size:5 final size:5
Alignment explanation
Indices: 834482--834521 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
834472 ATTTATAAAT
834482 TTATA TTATA TTTATA TTAT- TT-T- TTATA TTATA TTATA TT
1 TTATA TTATA -TTATA TTATA TTATA TTATA TTATA TTATA TT
834522 TTAATATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 3 0.09
4 3 0.09
5 21 0.66
6 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (5 bp):
TTATA
Found at i:834502 original size:28 final size:28
Alignment explanation
Indices: 834434--834530 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 28
834424 GCTATTTAAA
* *
834434 ATATTT-T-ATATTATATAATTTTAAA-T
1 ATATTTATAATATT-TATAAATTTATATT
834460 ATATTTATAAATATTTATAAATTTATATT
1 ATATTTAT-AATATTTATAAATTTATATT
* **
834489 ATATTTATATTATTT-TTTATATTATATT
1 ATATTTATAATATTTATAAAT-TTATATT
834517 ATATTT-TAATATTT
1 ATATTTATAATATTT
834531 TACTATCATA
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
26 6 0.10
27 11 0.18
28 29 0.48
29 14 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
ATATTTATAATATTTATAAATTTATATT
Found at i:834542 original size:28 final size:28
Alignment explanation
Indices: 834459--834550 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 28
834449 TAATTTTAAA
* *
834459 TATATTTATAA-ATATTTATAAATTTATAT
1 TATATTTATAATAT-TTTCTATA-TTATAT
* *
834488 TATATTTATATTATTTTTTATATTATAT
1 TATATTTATAATATTTTCTATATTATAT
834516 TATATTT-TAATATTTTACTATCATATATAT
1 TATATTTATAATATTTT-CTAT-AT-TATAT
*
834546 CATAT
1 TATAT
834551 AATTTTTAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 8 0.15
28 16 0.30
29 18 0.34
30 11 0.21
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (28 bp):
TATATTTATAATATTTTCTATATTATAT
Found at i:835655 original size:12 final size:12
Alignment explanation
Indices: 835622--835670 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
835612 TTTTACTAAT
**
835622 TTAATATAAATA
1 TTAATATATTTA
835634 TT-ATATTATTTA
1 TTAATA-TATTTA
835646 TTAATATATTTA
1 TTAATATATTTA
*
835658 TCAATATATTTA
1 TTAATATATTTA
835670 T
1 T
835671 ATATTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 3 0.09
12 26 0.81
13 3 0.09
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (12 bp):
TTAATATATTTA
Found at i:839748 original size:19 final size:19
Alignment explanation
Indices: 839724--839762 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
839714 AAATTATATT
839724 ATAAAA-ATAAATAATATAA
1 ATAAAATATAAAT-ATATAA
839743 ATAAAATATAAATATATAA
1 ATAAAATATAAATATATAA
839762 A
1 A
839763 AAATAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
ATAAAATATAAATATATAA
Found at i:839828 original size:26 final size:26
Alignment explanation
Indices: 839784--839833 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
839774 TGTTTGATCT
* *
839784 TATATATTTTTATTATTTTAATTTTA
1 TATAAATTTTTAATATTTTAATTTTA
* *
839810 TATAAATTTTTAATCTTTTTATTT
1 TATAAATTTTTAATATTTTAATTT
839834 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (26 bp):
TATAAATTTTTAATATTTTAATTTTA
Found at i:840140 original size:85 final size:85
Alignment explanation
Indices: 839983--840140 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 85
839973 CAACGAAAAA
* * * * * ** **
839983 TCATCATTTCGTTTTAATTTTTTCATTAGTTGAAAATATTATTAGGAAATGTAAGTATAATATTT
1 TCATCATTTCATTTTAATTGTTTCATTAATTGAAAAAATAATTAAAAAATAAAAGTATAATATTT
840048 ATAATATACATGAAAGAAAT
66 ATAATATACATGAAAGAAAT
*
840068 TCATCATTTCATTTTAATTGTTTCATTAATTGAAAAAAATAATTAAAAAATAAAAGTATAATTTT
1 TCATCATTTCATTTTAATTGTTTCATTAATTG-AAAAAATAATTAAAAAATAAAAGTATAATATT
840133 TAT-ATATA
65 TATAATATA
840141 ATATATTATT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
85 34 0.55
86 28 0.45
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.44
Consensus pattern (85 bp):
TCATCATTTCATTTTAATTGTTTCATTAATTGAAAAAATAATTAAAAAATAAAAGTATAATATTT
ATAATATACATGAAAGAAAT
Found at i:840816 original size:19 final size:19
Alignment explanation
Indices: 840761--840837 Score: 56
Period size: 19 Copynumber: 4.3 Consensus size: 19
840751 AAAAATATAT
**
840761 TATATATTATATATGTAAA
1 TATATATTATATAAATAAA
* *
840780 TAT-T-TTACAT--ATACA
1 TATATATTATATAAATAAA
840795 TATATATTATATAAATAAA
1 TATATATTATATAAATAAA
* *
840814 TATATTTTA-ATTAAATACA
1 TATATATTATA-TAAATAAA
840833 TATAT
1 TATAT
840838 TTTTATGTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
15 6 0.13
16 1 0.02
17 10 0.22
18 2 0.04
19 27 0.59
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (19 bp):
TATATATTATATAAATAAA
Found at i:840828 original size:15 final size:17
Alignment explanation
Indices: 840762--840838 Score: 55
Period size: 17 Copynumber: 4.4 Consensus size: 17
840752 AAAATATATT
**
840762 ATATATTATATATGTAA
1 ATATATTATATAAATAA
* * * * *
840779 ATATTTTACATATACAT
1 ATATATTATATAAATAA
840796 ATATATTATATAAATAA
1 ATATATTATATAAATAA
* *
840813 ATATATTTTAATTAAATAC
1 ATATATTAT-A-TAAATAA
840832 ATATATT
1 ATATATT
840839 TTTATGTAAA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
17 32 0.70
18 1 0.02
19 13 0.28
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (17 bp):
ATATATTATATAAATAA
Found at i:840838 original size:19 final size:19
Alignment explanation
Indices: 840790--840840 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
840780 TATTTTACAT
*
840790 ATACATATATATTATATAA
1 ATACATATATTTTATATAA
*
840809 ATAAATATATTTTA-ATTAA
1 ATACATATATTTTATA-TAA
840828 ATACATATATTTT
1 ATACATATATTTT
840841 TATGTAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (19 bp):
ATACATATATTTTATATAA
Found at i:840908 original size:24 final size:24
Alignment explanation
Indices: 840853--840909 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
840843 TGTAAAAATA
* *
840853 AAATATAAAATTATAAATATTTAAT
1 AAATA-AAAATTATAAACATTCAAT
** *
840878 ATTTAAAAATTTTAAACATTCAAT
1 AAATAAAAATTATAAACATTCAAT
840902 AAATAAAA
1 AAATAAAA
840910 TAAATATTAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
AAATAAAAATTATAAACATTCAAT
Found at i:840962 original size:19 final size:19
Alignment explanation
Indices: 840940--840981 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
840930 TAATTAAGTT
840940 TAATAATTTATTTT-AATAA
1 TAATAATTTATTTTCAAT-A
*
840959 TAATATTTTATTTTCAATA
1 TAATAATTTATTTTCAATA
840978 TAAT
1 TAAT
840982 TATAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
TAATAATTTATTTTCAATA
Found at i:841006 original size:13 final size:14
Alignment explanation
Indices: 840977--841004 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
840967 TATTTTCAAT
840977 ATAATTATAAAAAA
1 ATAATTATAAAAAA
840991 ATAATTATAAAAAA
1 ATAATTATAAAAAA
841005 TATTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATAATTATAAAAAA
Found at i:841009 original size:12 final size:13
Alignment explanation
Indices: 840977--841006 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
840967 TATTTTCAAT
840977 ATAATTATAAAAAA
1 ATAATTAT-AAAAA
840991 ATAATTATAAAAA
1 ATAATTATAAAAA
841004 ATA
1 ATA
841007 TTAAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAATTATAAAAA
Found at i:841046 original size:23 final size:20
Alignment explanation
Indices: 841001--841047 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
840991 ATAATTATAA
*
841001 AAAATATTAAAAATTAATTT
1 AAAATATTAAAAATAAATTT
841021 AAAATATTAAATGAATGAAATTT
1 AAAATATTAAA--AAT-AAATTT
841044 AAAA
1 AAAA
841048 AAATGTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 11 0.48
22 3 0.13
23 9 0.39
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (20 bp):
AAAATATTAAAAATAAATTT
Found at i:841821 original size:20 final size:19
Alignment explanation
Indices: 841798--841842 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
841788 AACATGTTAA
841798 TATATCAATAATTTT-ATAAT
1 TATAT-AAT-ATTTTAATAAT
841818 TATATAATATTTTAAATAAT
1 TATATAATATTTT-AATAAT
841838 TATAT
1 TATAT
841843 TTATTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.22
19 3 0.13
20 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TATATAATATTTTAATAAT
Found at i:841885 original size:25 final size:23
Alignment explanation
Indices: 841853--841915 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 23
841843 TTATTATATT
841853 ATTAATATATATTAAAAATAAATA
1 ATTAATATATATTAAAAA-AAATA
*
841877 ATATAATATTATTTATTAAAAAATATA
1 AT-TAATA-TA--TATTAAAAAAAATA
841904 ATT-ATATATATT
1 ATTAATATATATT
841916 TTATAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
22 4 0.12
24 4 0.12
25 8 0.24
26 3 0.09
27 6 0.18
28 9 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTAATATATATTAAAAAAAATA
Found at i:841915 original size:22 final size:22
Alignment explanation
Indices: 841871--841915 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
841861 ATATTAAAAA
* *
841871 TAAATAATATAATATTATTTAT
1 TAAAAAATATAATATTATATAT
841893 TAAAAAATATAAT-TATATATAT
1 TAAAAAATATAATAT-TATATAT
841915 T
1 T
841916 TTATAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAAAAATATAATATTATATAT
Found at i:841986 original size:26 final size:25
Alignment explanation
Indices: 841887--841989 Score: 77
Period size: 26 Copynumber: 4.0 Consensus size: 25
841877 ATATAATATT
*
841887 ATTTATTAAAAAATATAATTATATA
1 ATTTATTAAAAAATATAATTTTATA
***
841912 TATTT-TATAAATTTTTATAACCTTTT-T-
1 -ATTTAT-TAAA-AAATATAA--TTTTATA
*
841939 ATTTATTAAAAAATATTATTTTATA
1 ATTTATTAAAAAATATAATTTTATA
*
841964 ATTTATTAATAATATATAATTTTATA
1 ATTTATTAA-AAAATATAATTTTATA
841990 CATTAATAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
23 4 0.07
24 1 0.02
25 14 0.24
26 30 0.51
27 6 0.10
28 1 0.02
29 3 0.05
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
ATTTATTAAAAAATATAATTTTATA
Found at i:841999 original size:26 final size:26
Alignment explanation
Indices: 841951--842000 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
841941 TTATTAAAAA
* *
841951 ATATTATTTTATAATTTATTAATAAT
1 ATATAATTTTATAATTTAATAATAAT
841977 ATATAATTTTATACA-TTAATAATA
1 ATATAATTTTATA-ATTTAATAATA
842001 TAATAAATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
ATATAATTTTATAATTTAATAATAAT
Found at i:842827 original size:2 final size:2
Alignment explanation
Indices: 842820--842853 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
842810 CTCCAAAAAT
842820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
842854 GTAATATACT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:843153 original size:18 final size:19
Alignment explanation
Indices: 843112--843154 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
843102 TTAATTTTTA
843112 TGAAAGAAGAAAGAAAAGC
1 TGAAAGAAGAAAGAAAAGC
* * *
843131 AGAAA-AAGAAAGGAAAGG
1 TGAAAGAAGAAAGAAAAGC
843149 TGAAAG
1 TGAAAG
843155 GGAAGGAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.63, C:0.02, G:0.30, T:0.05
Consensus pattern (19 bp):
TGAAAGAAGAAAGAAAAGC
Found at i:843179 original size:26 final size:26
Alignment explanation
Indices: 843150--843245 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 26
843140 AAGGAAAGGT
* *
843150 GAAAGGGAAGGAGAAAAAGACGGATA
1 GAAAGAGAAGGAGAAAAAGAAGGATA
* * * * **
843176 GAAAAAAAAGGAAAAAAATAAAAAGT-
1 GAAAGAGAAGGAGAAAAAGAAGGA-TA
843202 GAAAGAGAAGGAGAAAAAGAAGGATA
1 GAAAGAGAAGGAGAAAAAGAAGGATA
* *
843228 GAAAGAAAAGGAAAAAAA
1 GAAAGAGAAGGAGAAAAA
843246 TTAAATATTA
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
25 1 0.02
26 50 0.96
27 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.28, T:0.04
Consensus pattern (26 bp):
GAAAGAGAAGGAGAAAAAGAAGGATA
Found at i:843212 original size:52 final size:52
Alignment explanation
Indices: 843148--843246 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
843138 GAAAGGAAAG
* *
843148 GTGAAAGGGAAGGAGAAAAAGACGGATAGAAAAAAAAGGAAAAAAATAAAAA
1 GTGAAAGAGAAGGAGAAAAAGAAGGATAGAAAAAAAAGGAAAAAAATAAAAA
*
843200 GTGAAAGAGAAGGAGAAAAAGAAGGATAGAAAGAAAAGGAAAAAAAT
1 GTGAAAGAGAAGGAGAAAAAGAAGGATAGAAAAAAAAGGAAAAAAAT
843247 TAAATATTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.65, C:0.01, G:0.28, T:0.06
Consensus pattern (52 bp):
GTGAAAGAGAAGGAGAAAAAGAAGGATAGAAAAAAAAGGAAAAAAATAAAAA
Found at i:843276 original size:6 final size:6
Alignment explanation
Indices: 843253--843434 Score: 74
Period size: 6 Copynumber: 32.5 Consensus size: 6
843243 AAATTAAATA
* *
843253 TTATAT GTTATA- TTATAT TTATAT TT-TAT TTTTAT ATTATAA TTATAT
1 TTATAT -TTATAT TTATAT TTATAT TTATAT TTATAT -TTATAT TTATAT
* * ** * * * *
843301 TTA-AA TTAT-T ATATAT TTATAT AAAT-T TTA-AA ATATAA ATA-AT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
** *
843344 TTAT-T TTATAT AAATTT TAATATAT TTATAT TT-T-T TTATAT TTATA-
1 TTATAT TTATAT TTATAT T--TATAT TTATAT TTATAT TTATAT TTATAT
* *
843390 TTATTT TTATA- TTATAT TT-TAT TT-TAA TT-T-T TTATA- TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
843432 TTA
1 TTA
843435 AAATTAATAT
Statistics
Matches: 132, Mismatches: 25, Indels: 37
0.68 0.13 0.19
Matches are distributed among these distances:
4 5 0.04
5 56 0.42
6 58 0.44
7 9 0.07
8 4 0.03
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.63
Consensus pattern (6 bp):
TTATAT
Found at i:843276 original size:11 final size:11
Alignment explanation
Indices: 843250--843434 Score: 77
Period size: 11 Copynumber: 17.1 Consensus size: 11
843240 AAAAAATTAA
843250 ATATTATATGTT
1 ATATTATAT-TT
843262 ATATTATATTT
1 ATATTATATTT
*
843273 ATATTTTATTTTT
1 ATA--TTATATTT
*
843286 ATATTATAATT
1 ATATTATATTT
*
843297 ATATT-TAAATT
1 ATATTAT-ATTT
843308 AT-TATATATTT
1 ATAT-TATATTT
*
843319 ATA-TAAATTT
1 ATATTATATTT
* *
843329 -TA--AAATAT
1 ATATTATATTT
*
843337 A-AATA-ATTT
1 ATATTATATTT
* **
843346 ATTTTATATAA
1 ATATTATATTT
* *
843357 ATTTTA-ATAT
1 ATATTATATTT
843367 AT-TTATATTT
1 ATATTATATTT
*
843377 -TTTTATATTT
1 ATATTATATTT
*
843387 ATATTATTTTT
1 ATATTATATTT
843398 ATATTATATTTT
1 ATATTATA-TTT
* *
843410 ATTTTAATTTTTT
1 ATATT-A-TATTT
843423 ATATTATATTT
1 ATATTATATTT
843434 A
1 A
843435 AAATTAATAT
Statistics
Matches: 136, Mismatches: 20, Indels: 35
0.71 0.10 0.18
Matches are distributed among these distances:
8 6 0.04
9 10 0.07
10 27 0.20
11 56 0.41
12 18 0.13
13 18 0.13
14 1 0.01
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (11 bp):
ATATTATATTT
Found at i:843292 original size:18 final size:18
Alignment explanation
Indices: 843250--843433 Score: 70
Period size: 16 Copynumber: 10.6 Consensus size: 18
843240 AAAAAATTAA
* *
843250 ATATTATATGTTA-TATT
1 ATATTATATTTTATTTTT
843267 ATATTTATATTTTATTTTT
1 ATA-TTATATTTTATTTTT
* *
843286 ATATTATA-ATTATATTT
1 ATATTATATTTTATTTTT
* * *
843303 A-AAT-TATTATATATTT
1 ATATTATATTTTATTTTT
* ***
843319 ATA-TAAATTTTA-AAAT
1 ATATTATATTTTATTTTT
* *
843335 ATA-AATAATTTA-TTTT
1 ATATTATATTTTATTTTT
*
843351 ATA-TAAATTTTAATATATTT
1 ATATTATATTTT-AT-T-TTT
*
843371 ATATT-T-TTTTATATTT
1 ATATTATATTTTATTTTT
*
843387 ATATTAT-TTTTA-TATT
1 ATATTATATTTTATTTTT
*
843403 ATATTTTATTTTAATTTTTT
1 ATATTATATTTT-A-TTTTT
843423 ATATTATATTT
1 ATATTATATTT
843434 AAAATTAATA
Statistics
Matches: 125, Mismatches: 27, Indels: 27
0.70 0.15 0.15
Matches are distributed among these distances:
15 2 0.02
16 47 0.38
17 28 0.22
18 17 0.14
19 11 0.09
20 19 0.15
21 1 0.01
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (18 bp):
ATATTATATTTTATTTTT
Found at i:843312 original size:20 final size:20
Alignment explanation
Indices: 843287--843374 Score: 70
Period size: 20 Copynumber: 4.8 Consensus size: 20
843277 TTTATTTTTA
*
843287 TATTATA-ATTATATTTAAAT
1 TATTATATATT-TATATAAAT
843307 TATTATATATTTATATAAAT
1 TATTATATATTTATATAAAT
843327 T-TTA-A-A---ATATAAAT
1 TATTATATATTTATATAAAT
*
843341 AATT-TAT-TTTATATAAAT
1 TATTATATATTTATATAAAT
843359 T-TTAATATATTTATAT
1 TATT-ATATATTTATAT
843375 TTTTTTATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 20
0.71 0.04 0.26
Matches are distributed among these distances:
14 8 0.15
15 3 0.05
17 3 0.05
18 9 0.16
19 6 0.11
20 23 0.42
21 3 0.05
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTATATATTTATATAAAT
Found at i:843354 original size:32 final size:31
Alignment explanation
Indices: 843302--843384 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 31
843292 TAATTATATT
843302 TAAATTATTATATATTTATATAAATTTTAAAATA
1 TAAA-TATT-TAT-TTTATATAAATTTTAAAATA
*
843336 TAAATAATTTATTTTATATAAATTTTAATATA
1 TAAAT-ATTTATTTTATATAAATTTTAAAATA
**
843368 TTTATATTT-TTTTATAT
1 TAAATATTTATTTTATAT
843385 TTATATTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 8 0.18
31 4 0.09
32 22 0.49
33 4 0.09
34 7 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (31 bp):
TAAATATTTATTTTATATAAATTTTAAAATA
Found at i:843387 original size:25 final size:26
Alignment explanation
Indices: 843359--843449 Score: 89
Period size: 25 Copynumber: 3.5 Consensus size: 26
843349 TTATATAAAT
843359 TTTAATATATTTATATT-TTTTTATA
1 TTTAATATATTTATATTATTTTTATA
*
843384 TTTATATTATTTTTATATTATATTTTAT-
1 TTTA-A-TATATTTATATTAT-TTTTATA
* * *
843412 TTTAAT-TTTTTATATTATATTTAAA
1 TTTAATATATTTATATTATTTTTATA
*
843437 ATTAATATATTTA
1 TTTAATATATTTA
843450 ATACATTATT
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
24 4 0.07
25 21 0.38
26 7 0.13
27 12 0.22
28 5 0.09
29 6 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTAATATATTTATATTATTTTTATA
Found at i:843398 original size:36 final size:36
Alignment explanation
Indices: 843342--843435 Score: 104
Period size: 36 Copynumber: 2.6 Consensus size: 36
843332 AATATAAATA
* *
843342 ATTTATTTTATATAAATTTTAA-TATATTTATATTTT
1 ATTTATTTTATATTATTTTTAATTATATTT-TATTTT
843378 -TTTATATTTATATTATTTTTATATTATATTTTATTTT
1 ATTTAT-TTTATATTATTTTTA-ATTATATTTTATTTT
* *
843415 AATT-TTTTATATTATATTTAA
1 ATTTATTTTATATTATTTTTAA
843436 AATTAATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
35 6 0.12
36 27 0.54
37 8 0.16
38 9 0.18
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (36 bp):
ATTTATTTTATATTATTTTTAATTATATTTTATTTT
Found at i:843409 original size:13 final size:13
Alignment explanation
Indices: 843391--843433 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
843381 ATATTTATAT
843391 TATTTTTATATTA
1 TATTTTTATATTA
*
843404 TA-TTTTATTTTA
1 TATTTTTATATTA
843416 -ATTTTTTATATTA
1 TA-TTTTTATATTA
843429 TATTT
1 TATTT
843434 AAAATTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.04
12 9 0.36
13 14 0.56
14 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTTTATATTA
Found at i:843692 original size:32 final size:32
Alignment explanation
Indices: 843606--843693 Score: 81
Period size: 32 Copynumber: 2.7 Consensus size: 32
843596 ATATTATAAT
* * *
843606 TATATTTAAAATATTATTTATATAGTATTTTGA
1 TATATTT-ATATATTATTTATATAGAATTTTAA
* *
843639 TACATTAATA-ATTTATTTTATATA-AATTTTAA
1 TATATTTATATA-TTA-TTTATATAGAATTTTAA
843671 TATATTTATATATTATGTTATAT
1 TATATTTATATATTAT-TTATAT
843694 TATATATTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
31 2 0.05
32 28 0.64
33 14 0.32
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (32 bp):
TATATTTATATATTATTTATATAGAATTTTAA
Found at i:844643 original size:15 final size:15
Alignment explanation
Indices: 844623--844656 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
844613 AAAAATGTCC
844623 TTAAAATAAAGGTTT
1 TTAAAATAAAGGTTT
844638 TTAAAATAAAGGTTT
1 TTAAAATAAAGGTTT
844653 TTAA
1 TTAA
844657 GCTCAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (15 bp):
TTAAAATAAAGGTTT
Found at i:852338 original size:3 final size:3
Alignment explanation
Indices: 852330--852355 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
852320 CTATGCATAA
852330 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
852356 TGACAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:852412 original size:54 final size:54
Alignment explanation
Indices: 852353--852458 Score: 178
Period size: 55 Copynumber: 2.0 Consensus size: 54
852343 AGAAGAAGAA
*
852353 GAATGACAATG-TTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAAATTTT
1 GAATGACAATGCTTGGATGAAAACCTAAAAGGGCATTCAAGTAA-AAAAAATTTT
*
852407 GAATGACAATGCTTGGATGAAAACCTGAAAGGGCATTCAAGTAAAAAAAATT
1 GAATGACAATGCTTGGATGAAAACCTAAAAGGGCATTCAAGTAAAAAAAATT
852459 GAATAAAAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
54 19 0.39
55 30 0.61
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.23
Consensus pattern (54 bp):
GAATGACAATGCTTGGATGAAAACCTAAAAGGGCATTCAAGTAAAAAAAATTTT
Found at i:854074 original size:170 final size:168
Alignment explanation
Indices: 853847--854163 Score: 411
Period size: 170 Copynumber: 1.9 Consensus size: 168
853837 TCAGACTTGG
* * * * * * ** * *
853847 GAGACTTTTTCATCTTTTATCTGCCCGTTGGCTCAGTTTTGGGAGACTTATTTTATCAATCGTCT
1 GAGACTTTTTCATCTTTCATCTGCCCATCGACTCAGTCTCGAAAGACTTACTTTATCAATCATCT
* * **
853912 ACCCATCGGCTCAGTCCCAATAGACTTCCTTTATCAATTGTCTGCCCGTCGGCTCAAACCTG-GA
66 ACCCATCAGCTCAGT-CCAAGAGACTTCCTTTATCAATCATCTGCCCGTCGGCTCAAACCTGAG-
853976 ATACTTCTTTCATCAATCGTCTACCATTGGCTCAATCTCGA
129 ATACTTCTTT-ATCAATCGTCTACCATTGGCTCAATCTCGA
* *
854017 GAGACTTTTTCATCTTTCATCTGCCCATCGACTCAGTCTCGAAAGACTTCCTTTATCAATCATTT
1 GAGACTTTTTCATCTTTCATCTGCCCATCGACTCAGTCTCGAAAGACTTACTTTATCAATCATCT
* ** * *
854082 ACCCATCAGCTTAGTCCAAGAGACTTCCTTTATCAATCATCTGCTTGTCGGGTCAGACCTGAGAT
66 ACCCATCAGCTCAGTCCAAGAGACTTCCTTTATCAATCATCTGCCCGTCGGCTCAAACCTGAGAT
854147 ACTTCTTTATCAATCGT
131 ACTTCTTTATCAATCGT
854164 TTGCCCGTCG
Statistics
Matches: 125, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
168 9 0.07
169 49 0.39
170 67 0.54
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (168 bp):
GAGACTTTTTCATCTTTCATCTGCCCATCGACTCAGTCTCGAAAGACTTACTTTATCAATCATCT
ACCCATCAGCTCAGTCCAAGAGACTTCCTTTATCAATCATCTGCCCGTCGGCTCAAACCTGAGAT
ACTTCTTTATCAATCGTCTACCATTGGCTCAATCTCGA
Found at i:854193 original size:42 final size:42
Alignment explanation
Indices: 853807--854254 Score: 165
Period size: 43 Copynumber: 10.5 Consensus size: 42
853797 CTCTTTCTAT
* *
853807 ACTTCCTTTATCAATCGTCTGCCTGTCGACTCAGA-CTTGGGAG
1 ACTT-CTTTATCAATCGTCTGCCCGTCGACTCA-ATCTCGGGAG
** ** * * * * *
853850 ACTT-TTTCATCTTTTATCTGCCCGTTGGCTCAGTTTTGGGAG
1 ACTTCTTT-ATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
* * * * * * ***
853892 ACTTATTTTATCAATCGTCTACCCATCGGCTCAGTCCCAATAG
1 ACTT-CTTTATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
* * * * *
853935 ACTTCCTTTATCAATTGTCTGCCCGTCGGCTCAAAC-CTGGAAT
1 ACTT-CTTTATCAATCGTCTGCCCGTCGACTCAATCTC-GGGAG
* * * * *
853978 ACTTCTTTCATCAATCGTCT-ACCATTGGCTCAATCTCGAGAG
1 ACTTCTTT-ATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
** * * * **
854020 ACTT-TTTCATCTTTCATCTGCCCATCGACTCAGTCTCGAAAG
1 ACTTCTTT-ATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
* * * * * * **
854062 ACTTCCTTTATCAATCATTTACCCATC-AGCTTAGTC-CAAGAG
1 ACTT-CTTTATCAATCGTCTGCCCGTCGA-CTCAATCTCGGGAG
* ** ** * * *
854104 ACTTCCTTTATCAATCATCTGCTTGTCGGGTCAGACCT-GAGAT
1 ACTT-CTTTATCAATCGTCTGCCCGTCGACTCA-ATCTCGGGAG
* *
854147 ACTTCTTTATCAATCGTTTGCCCGTCGACTCAATCTTGGGAG
1 ACTTCTTTATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
* * * *
854189 ACTTCCTTCATCAATTGTCTGCCCGTCGGCTCATTCTCGGGAG
1 ACTT-CTTTATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
* *
854232 ACTTCTTTTATTAATAGTCTGCC
1 ACTTC-TTTATCAATCGTCTGCC
854255 TATCAGCTTA
Statistics
Matches: 302, Mismatches: 86, Indels: 34
0.72 0.20 0.08
Matches are distributed among these distances:
41 18 0.06
42 130 0.43
43 148 0.49
44 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (42 bp):
ACTTCTTTATCAATCGTCTGCCCGTCGACTCAATCTCGGGAG
Found at i:854236 original size:85 final size:86
Alignment explanation
Indices: 853807--854251 Score: 264
Period size: 85 Copynumber: 5.2 Consensus size: 86
853797 CTCTTTCTAT
* ** * * * **
853807 ACTTCCTTTATCAATCGTCTGCCTGTCGACTCAGA-CTTGGGAGACTT-TTTCATCTTTTATCTG
1 ACTTCCTTTATCAATCGTCTACCCATCGACTCA-ATCTCGAGAGACTTCCTTCATCAATTATCTG
* * *
853870 CCCGTTGGCTCAGTTTTGGGAG
65 CCCGTCGGCTCAGTCTCGGGAG
** * * * * * * *
853892 ACTTATTTTATCAATCGTCTACCCATCGGCTCAGTCCCAATAGACTTCCTTTATCAATTGTCTGC
1 ACTTCCTTTATCAATCGTCTACCCATCGACTCAATCTCGAGAGACTTCCTTCATCAATTATCTGC
** * *
853957 CCGTCGGCTCAAAC-CTGGAAT
66 CCGTCGGCTCAGTCTC-GGGAG
* * * *
853978 ACTT-CTTTCATCAATCGTCTA-CCATTGGCTCAATCTCGAGAGACTT-TTTCATC-TTTCATCT
1 ACTTCCTTT-ATCAATCGTCTACCCATCGACTCAATCTCGAGAGACTTCCTTCATCAATT-ATCT
* * **
854039 GCCCATCGACTCAGTCTCGAAAG
64 GCCCGTCGGCTCAGTCTCGGGAG
* * * * * * *
854062 ACTTCCTTTATCAATCATTTACCCATC-AGCTTAGTC-CAAGAGACTTCCTTTATCAATCATCTG
1 ACTTCCTTTATCAATCGTCTACCCATCGA-CTCAATCTCGAGAGACTTCCTTCATCAATTATCTG
** * * * *
854125 CTTGTCGGGTCAGAC-CTGAGAT
65 CCCGTCGGCTCAGTCTC-GGGAG
* * * * * *
854147 ACTT-CTTTATCAATCGTTTGCCCGTCGACTCAATCTTGGGAGACTTCCTTCATCAATTGTCTGC
1 ACTTCCTTTATCAATCGTCTACCCATCGACTCAATCTCGAGAGACTTCCTTCATCAATTATCTGC
*
854211 CCGTCGGCTCATTCTCGGGAG
66 CCGTCGGCTCAGTCTCGGGAG
* * *
854232 ACTTCTTTTATTAATAGTCT
1 ACTTCCTTTATCAATCGTCT
854252 GCCTATCAGC
Statistics
Matches: 263, Mismatches: 81, Indels: 31
0.70 0.22 0.08
Matches are distributed among these distances:
83 2 0.01
84 71 0.27
85 136 0.52
86 54 0.21
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.36
Consensus pattern (86 bp):
ACTTCCTTTATCAATCGTCTACCCATCGACTCAATCTCGAGAGACTTCCTTCATCAATTATCTGC
CCGTCGGCTCAGTCTCGGGAG
Found at i:854398 original size:43 final size:42
Alignment explanation
Indices: 853888--854490 Score: 158
Period size: 43 Copynumber: 14.3 Consensus size: 42
853878 CTCAGTTTTG
* * * * *
853888 GGAGACTTATTTTATCAATCGTCTACCCATCGGCTCAGTCCCA
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAG-ACCA
** * ** * * * *
853931 ATAGACTTCCTTTATCAATTGTCTGCCCGTCGGCTCAAACCT
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGACCA
* * * * *
853973 GGAATACTTCTTTCATCAATCGTCTAC-CATTGGCTCA-ATCTC-
1 GG-AGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGA-C-CA
* ** * * *
854015 GAGAGACTT-TTTCATCTTTCATCTGCCCATCGACTCAGTCTC-
1 G-GAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGAC-CA
* * * * * * * *
854057 GAAAGACTTCCTTTATCAATCATTTACCCATCAGCTTAGTCCA
1 G-GAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGACCA
* * ** * *
854100 AGAGACTTCCTTTATCAATCATCTGCTTGTCGGGTCAGACCT
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGACCA
* * * * * * **
854142 GAGATACTTC-TTTATCAATCGTTTGCCCGTCGACTCA-ATCTTG
1 G-GAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGA-C-CA
* * ** * * ** *
854185 GGAGACTTCCTTCATCAATTGTCTGCCCGTCGGCTCATTCTCG
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGAC-CA
* * * *
854228 GGAGACTTCTTTTATTAAT-AGTCTGC-CTATCAGCTTAGACTTA
1 GGAGACTTCTTTTATCAATCA-TCTGCTC-ATCGGCTCAGAC-CA
* * * * * **
854271 GGAGA-TTCTTTTATTAATCATCTACTCGTCGGTTCAGTCTTG
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGAC-CA
* * * * * *
854313 GGAGA---C-TTTATCAATCGTTTGCCCATCAGTTTAGACTCA
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGAC-CA
*
854352 GGAGACTTCTTTTATCAATCATCTGCTCATTGGCTCAGACCTA
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGACC-A
* ** * * * *
854395 GGAGACTTC-TTCATCTTTCATCTGCTCCTCCGTTCAGACCC
1 GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGACCA
* * * *
854436 GAGAGGC-TCTTTTATCAATCATCTACCCATCGGCTCAAGCCCA
1 G-GAGACTTCTTTTATCAATCATCTGCTCATCGGCTC-AGACCA
854479 GGAGACTTCTTT
1 GGAGACTTCTTT
854491 ATCCATCGTT
Statistics
Matches: 412, Mismatches: 122, Indels: 52
0.70 0.21 0.09
Matches are distributed among these distances:
39 27 0.07
40 1 0.00
41 18 0.04
42 180 0.44
43 186 0.45
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (42 bp):
GGAGACTTCTTTTATCAATCATCTGCTCATCGGCTCAGACCA
Found at i:854400 original size:82 final size:81
Alignment explanation
Indices: 854251--854402 Score: 196
Period size: 82 Copynumber: 1.9 Consensus size: 81
854241 ATTAATAGTC
* * * * * * * *
854251 TGCCTATCAGCTTAGACTTAGGAGATTCTTTTATTAATCATCTACTCGTCGGTTCAGTCTTGGGA
1 TGCCCATCAGCTTAGACTCAGGAGATTCTTTTATCAATCATCTACTCATCGGCTCAGACCTAGGA
854316 GACTTTATCAATCGTT
66 GACTTTATCAATCGTT
* * *
854332 TGCCCATCAGTTTAGACTCAGGAGACTTCTTTTATCAATCATCTGCTCATTGGCTCAGACCTAGG
1 TGCCCATCAGCTTAGACTCAGGAGA-TTCTTTTATCAATCATCTACTCATCGGCTCAGACCTAGG
854397 AGACTT
65 AGACTT
854403 CTTCATCTTT
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
81 22 0.37
82 37 0.63
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (81 bp):
TGCCCATCAGCTTAGACTCAGGAGATTCTTTTATCAATCATCTACTCATCGGCTCAGACCTAGGA
GACTTTATCAATCGTT
Found at i:854493 original size:42 final size:43
Alignment explanation
Indices: 853888--854490 Score: 195
Period size: 42 Copynumber: 14.3 Consensus size: 43
853878 CTCAGTTTTG
* * * *
853888 GGAGACTTATTTTATCAATCGTCTACCCATCGGCTCAGTCCCA
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
** * ** * * *
853931 ATAGACTTCCTTTATCAATTGTCTGCCCGTCGGCTCA-AACCT
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * * * * *
853973 GGAATACTTCTTTCATCAATCGTCT-ACCATTGGCTCA-ATCTC-
1 GG-AGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGA-CCCA
* ** * * *
854015 GAGAGACTT-TTTCATCTTTCATCTGCCCATCGACTCAGTCTC-
1 G-GAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * * * * * *
854057 GAAAGACTTCCTTTATCAATCATTTACCCATCAGCTTAG-TCCA
1 G-GAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * *** * *
854100 AGAGACTTCCTTTATCAATCATCTGCTTGTCGGGTCAGA-CCT
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * * * * ***
854142 GAGATACTTC-TTTATCAATCGTTTGCCCGTCGACTCA-ATCTTG
1 G-GAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGA-CCCA
* * ** * ** * *
854185 GGAGACTTCCTTCATCAATTGTCTGCCCGTCGGCTCATTCTCG
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * * * **
854228 GGAGACTTCTTTTATTAAT-AGTCTGCCTATCAGCTTAGACTTA
1 GGAGACTTCTTTTATCAATCA-TCTGCCCATCGGCTCAGACCCA
* * * * * * ***
854271 GGAGA-TTCTTTTATTAATCATCTACTCGTCGGTTCAGTCTTG
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * * * * *
854313 GGAGA---C-TTTATCAATCGTTTGCCCATCAGTTTAGACTCA
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* * *
854352 GGAGACTTCTTTTATCAATCATCTGCTCATTGGCTCAGACCTA
1 GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
* ** * *
854395 GGAGACTTC-TTCATCTTTCATCTGCTCC-TCCGTTCAGACCC-
1 GGAGACTTCTTTTATCAATCATCTGC-CCATCGGCTCAGACCCA
* *
854436 GAGAGGC-TCTTTTATCAATCATCTACCCATCGGCTCA-AGCCCA
1 G-GAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGA-CCCA
854479 GGAGACTTCTTT
1 GGAGACTTCTTT
854491 ATCCATCGTT
Statistics
Matches: 407, Mismatches: 127, Indels: 52
0.69 0.22 0.09
Matches are distributed among these distances:
39 27 0.07
40 1 0.00
41 19 0.05
42 180 0.44
43 180 0.44
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (43 bp):
GGAGACTTCTTTTATCAATCATCTGCCCATCGGCTCAGACCCA
Found at i:856054 original size:166 final size:166
Alignment explanation
Indices: 855816--856359 Score: 645
Period size: 166 Copynumber: 3.3 Consensus size: 166
855806 AAATTACGAG
* * **
855816 GTTTTCTTCCCCGT-AATTTTTTCG-GGAAGATTTTTCTTAATTTTTAATTTTTAAAATTTATCA
1 GTTTTCTACTCCGTAAATTTTTT-GAGG-AGATTTTTCTTTGTTTTTAATTTTTAAAATTTATCA
* * *
855879 AATATCATTATTTATTTTATATTAATTCAGTTTTTAAAAATTAATTTATTTTCATGAGTTTTTGA
64 AACATCATTATTTATTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGA
*
855944 TTTTTTTCCGT-AAACTCTCATTTTTTCGAAATACGGT
129 TTTTTTTCCGTGAAACTCTCCTTTTTTCGAAATACGGT
* **
855981 GTTTTCTACTCCGTAAAGTTTTTTGAGGAGATTTTTCTTTGTTTTTAATTTTCAAAATTCGTCAA
1 GTTTTCTACTCCGTAAA-TTTTTTGAGGAGATTTTTCTTTGTTTTTAATTTTTAAAATTTATCAA
856046 ACATCATTATTTATTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGAT
65 ACATCATTATTTATTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGAT
* *
856111 TTTTTTCCTTGAAACT-TCCTTTTTTCCAAAAATACGGT
130 TTTTTTCCGTGAAACTCTCCTTTTTT-C-GAAATACGGT
* * * * * * * *
856149 GTTTTCTACTTCATAAATTATTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAGAATTTATTAA
1 GTTTTCTACTCCGTAAATT-TTTTGAGGAGATTTTTCTTTGTTTTTAATTTTTAAAATTTATCAA
* * * *
856214 ACATCATCATTTGA-TTCATATTAATTTATTTTTTAAAAATTAATTCATTTTCATGAGTTTTAGA
65 ACATCATTATTT-ATTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGA
* * *
856278 TTTTTTT--GTTGAAATTCTCCTTTTTTCGAGAA-ACCGA
129 TTTTTTTCCG-TGAAACTCTCCTTTTTTCGA-AATACGGT
* * * *
856315 GTTTTTTTCTCCGTAAATTTTTTTGGGGGGGATTTTTCTTTGTTT
1 GTTTTCTACTCCGTAAA-TTTTTT-GAGGAGATTTTTCTTTGTTT
856360 AAAAATTTTT
Statistics
Matches: 326, Mismatches: 40, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
165 12 0.04
166 134 0.41
167 45 0.14
168 134 0.41
169 1 0.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (166 bp):
GTTTTCTACTCCGTAAATTTTTTGAGGAGATTTTTCTTTGTTTTTAATTTTTAAAATTTATCAAA
CATCATTATTTATTTCATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATT
TTTTTCCGTGAAACTCTCCTTTTTTCGAAATACGGT
Found at i:856250 original size:168 final size:168
Alignment explanation
Indices: 855833--856304 Score: 634
Period size: 168 Copynumber: 2.8 Consensus size: 168
855823 TCCCCGTAAT
* * *
855833 TTTTTCG-GGAAGATTTTTCTTAATTTTTAATTTTTAAAATTTATCAAATATCATTATTTATTTT
1 TTTTTCGAGG-AGATTTTTCTTAGTTTTTAATTTTTAAAATTTATCAAACATCATTATTTATTTC
* *
855897 ATATTAATTCAGTTTTTAAAAATTAATTTATTTTCATGAGTTTTTGATTTTTTTCCGT-AAACTC
65 ATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAACTC
* * *
855961 TCATTTTTT-CGAAATACGGTGTTTTCTACTCCGTAAAG
130 TCCTTTTTTCCAAAATACGGTGTTTTCTACTCCATAAAG
* * * **
855999 TTTTTTGAGGAGATTTTTCTTTGTTTTTAATTTTCAAAATTCGTCAAACATCATTATTTATTTCA
1 TTTTTCGAGGAGATTTTTCTTAGTTTTTAATTTTTAAAATTTATCAAACATCATTATTTATTTCA
856064 TATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAACT-T
66 TATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAACTCT
*
856128 CCTTTTTTCCAAAAATACGGTGTTTTCTACTTCATAAA-
131 CCTTTTTTCC-AAAATACGGTGTTTTCTACTCCATAAAG
* * * * * *
856166 TTATTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAGAATTTATTAAACATCATCATTTGA-TT
1 TT-TTTCGAGGAGATTTTTCTTAGTTTTTAATTTTTAAAATTTATCAAACATCATTATTT-ATTT
* * * * *
856230 CATATTAATTTATTTTTTAAAAATTAATTCATTTTCATGAGTTTTAGATTTTTTT-GTTGAAATT
64 CATATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAACT
856294 CTCCTTTTTTC
129 CTCCTTTTTTC
856305 GAGAAACCGA
Statistics
Matches: 270, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
166 117 0.43
167 17 0.06
168 135 0.50
169 1 0.00
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (168 bp):
TTTTTCGAGGAGATTTTTCTTAGTTTTTAATTTTTAAAATTTATCAAACATCATTATTTATTTCA
TATTAATTCAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAACTCT
CCTTTTTTCCAAAATACGGTGTTTTCTACTCCATAAAG
Found at i:856369 original size:168 final size:164
Alignment explanation
Indices: 855844--856372 Score: 602
Period size: 168 Copynumber: 3.2 Consensus size: 164
855834 TTTTCGGGAA
** * * *
855844 GATTTTTCTTAATTTTTAATTTTTAAAATTTATCAAATATCATTATTTATTTTATATTAATTCAG
1 GATTTTTCTTTGTTTTAAATTTTTAAAATTTATCAAACATCATTATTTATTTCATATTAATTCAG
* *
855909 TTTTTAAAAATTAATTTATTTTCATGAGTTTTTGATTTTTTTCCG-T-AAACTCTCATTTTTTCG
66 TTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTT-CGTTGAAACTCTCCTTTTTTCG
*
855972 AAATA-CGGTGTTTTCTACTCCGTAAAGTTTTTTGAGGA
130 AAA-ACCGGT-TTTT-TACTCCGTAAA-TTTTTTGAGGG
* * **
856010 GATTTTTCTTTGTTTTTAATTTTCAAAATTCGTCAAACATCATTATTTATTTCATATTAATTCAG
1 GATTTTTCTTTGTTTTAAATTTTTAAAATTTATCAAACATCATTATTTATTTCATATTAATTCAG
* *
856075 TTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAACT-TCCTTTTTTCCA
66 TTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCGTTGAAACTCTCCTTTTTT-CG
* * * *
856139 AAAATACGGTGTTTTCTACTTCATAAATTATTTCGAGGG
130 AAAA-CCGGT-TTTT-TACTCCGTAAATT-TTTTGAGGG
* * * * * *
856178 GATTTTTCTTGGTTTTCAATTTTTAGAATTTATTAAACATCATCATTTGA-TTCATATTAATTTA
1 GATTTTTCTTTGTTTTAAATTTTTAAAATTTATCAAACATCATTATTT-ATTTCATATTAATTCA
* * *
856242 TTTTTTAAAAATTAATTCATTTTCATGAGTTTTAGATTTTTTT-GTTGAAATTCTCCTTTTTTCG
65 GTTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCGTTGAAACTCTCCTTTTTTCG
* *
856306 AGAAACCGAGTTTTTTTCTCCGTAAATTTTTTTGGGGGG
130 A-AAACCG-GTTTTTTACTCCGTAAA-TTTTTT-GAGGG
*
856345 GATTTTTCTTTGTTTAAAAATTTTTAAA
1 GATTTTTCTTTGTTT-TAAATTTTTAAA
856373 TGCATCTAAT
Statistics
Matches: 311, Mismatches: 39, Indels: 24
0.83 0.10 0.06
Matches are distributed among these distances:
165 1 0.00
166 120 0.39
167 46 0.15
168 143 0.46
169 1 0.00
ACGTcount: A:0.27, C:0.11, G:0.10, T:0.52
Consensus pattern (164 bp):
GATTTTTCTTTGTTTTAAATTTTTAAAATTTATCAAACATCATTATTTATTTCATATTAATTCAG
TTTTTAAAAATTAATTCATTTTCATGAGTTTTTGATTTTTTTCGTTGAAACTCTCCTTTTTTCGA
AAACCGGTTTTTTACTCCGTAAATTTTTTGAGGG
Found at i:856968 original size:11 final size:11
Alignment explanation
Indices: 856952--856976 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
856942 AGAGAGGTAT
856952 AAAGAGAAAGA
1 AAAGAGAAAGA
856963 AAAGAGAAAGA
1 AAAGAGAAAGA
856974 AAA
1 AAA
856977 AAAATAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AAAGAGAAAGA
Found at i:857941 original size:128 final size:127
Alignment explanation
Indices: 857790--858253 Score: 574
Period size: 127 Copynumber: 3.5 Consensus size: 127
857780 ATATTTCAAC
* *
857790 AAATATTAATCATTTTTAATTTTTTTATATTTCTATGGGTATCCGTAAGGGTATAAAAAATTTCG
1 AAATATTAATCATTTTTAA-TTTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTCG
**
857855 AAAAACTTTTTGTATCTTTTTGGGTATCTATTAAGGTACGAATGATTTTTTCCAAACATAAAT
65 AAAAACTTTTCATATCTTTTTGGGTATCTATTAAGGTACGAATGATTTTTTCCAAACATAAAT
*
857918 AAATATTAATCATTTTTAATTTTTTATATTCCTATGAGTATCCGTAAGGGTATAAAAGATTTCGA
1 AAATATTAATCATTTTTAATTTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTCGA
* *
857983 AAAACTTTTCATATCCTTTTGGGTATCCATTAAGGTACAGAATGATTTTTTTCCAAACATAAAT
66 AAAACTTTTCATATCTTTTTGGGTATCTATTAAGGTAC-GAATGA-TTTTTTCCAAACATAAAT
* * * * *
858047 GAATATTAGTCATTTTTAATTTTTTATATTCCTATAGGTATTCGTAGGGGTATAAAAGATTTC-A
1 AAATATTAATCATTTTTAATTTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTCGA
* ** *
858111 AAAACTTTTCATATCTTTTCGGGTAT-TCATTAAGGTACGAAATGATTTTTTAAGAAATAATTAA
66 AAAACTTTTCATATCTTTTTGGGTATCT-ATTAAGGTACG-AATGATTTTTT-CCAAA-CA-TAA
858175 CTCTCCTCACT
126 --------A-T
* * *
858186 AAATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCTGTAGGGGTATTAAAAGATTTC-
1 AAATATTAATCATTTTTAATTTTTTATATTCCTATGGGTATCCGTAAGGGTA-TAAAAGATTTCG
858250 AAAA
65 AAAA
858254 TTTTTTGTAT
Statistics
Matches: 294, Mismatches: 25, Indels: 22
0.86 0.07 0.06
Matches are distributed among these distances:
127 84 0.29
128 68 0.23
129 76 0.26
130 3 0.01
138 1 0.00
139 47 0.16
140 15 0.05
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (127 bp):
AAATATTAATCATTTTTAATTTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTCGA
AAAACTTTTCATATCTTTTTGGGTATCTATTAAGGTACGAATGATTTTTTCCAAACATAAAT
Found at i:859109 original size:19 final size:18
Alignment explanation
Indices: 859081--859135 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 18
859071 AATGAATAGT
*
859081 GATACGTGAATAGTGTATC
1 GATACATGAA-AGTGTATC
859100 GATACATGAAAGTGATGTATC
1 GATACATGAAA--G-TGTATC
859121 GATACATGAACAGTG
1 GATACATGAA-AGTG
859136 ATGAATAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.03
19 11 0.35
20 2 0.06
21 16 0.52
22 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (18 bp):
GATACATGAAAGTGTATC
Found at i:859120 original size:21 final size:22
Alignment explanation
Indices: 859094--859138 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
859084 ACGTGAATAG
859094 TGTATCGATACATGAA-AGTGA
1 TGTATCGATACATGAACAGTGA
859115 TGTATCGATACATGAACAGTGA
1 TGTATCGATACATGAACAGTGA
859137 TG
1 TG
859139 AATAGTGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (22 bp):
TGTATCGATACATGAACAGTGA
Found at i:859145 original size:10 final size:10
Alignment explanation
Indices: 859126--859156 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
859116 GTATCGATAC
859126 ATGAACAGTG
1 ATGAACAGTG
*
859136 ATGAATAGTG
1 ATGAACAGTG
859146 ATGAACAGTG
1 ATGAACAGTG
859156 A
1 A
859157 AAAATGAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:863396 original size:20 final size:20
Alignment explanation
Indices: 863371--863409 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
863361 ATGTTTACTC
863371 ATTTTAATTCGATTTATTTG
1 ATTTTAATTCGATTTATTTG
*
863391 ATTTTATTTCGATTTATTT
1 ATTTTAATTCGATTTATTT
863410 TTTAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (20 bp):
ATTTTAATTCGATTTATTTG
Found at i:865900 original size:13 final size:13
Alignment explanation
Indices: 865882--865908 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
865872 ACATATTGCT
865882 TTGTATCGATACA
1 TTGTATCGATACA
865895 TTGTATCGATACA
1 TTGTATCGATACA
865908 T
1 T
865909 GTTCTTGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:865926 original size:32 final size:33
Alignment explanation
Indices: 865863--865927 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
865853 CACACTTAGA
* *
865863 TGTAGCGATACATATTGCTTTGTATCGATACAT
1 TGTAGCGATACATATTGCTTGGTATCCATACAT
* *
865896 TGTATCGATACATGTT-CTTGGTATCCATACAT
1 TGTAGCGATACATATTGCTTGGTATCCATACAT
865928 AGTGAATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (33 bp):
TGTAGCGATACATATTGCTTGGTATCCATACAT
Found at i:865945 original size:20 final size:18
Alignment explanation
Indices: 865894--865945 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
865884 GTATCGATAC
*
865894 ATTGTATCGATACATGTT
1 ATTGTATCGATACATGTA
* *
865912 CTTGGTATCCATACATAGTGA
1 ATT-GTATCGATACAT-GT-A
865933 ATTGTATCGATAC
1 ATTGTATCGATAC
865946 CTGAAATTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 2 0.08
19 11 0.42
20 11 0.42
21 2 0.08
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (18 bp):
ATTGTATCGATACATGTA
Found at i:874020 original size:34 final size:35
Alignment explanation
Indices: 873969--874037 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 35
873959 TGCTATAACA
*
873969 AAAAGGGGGAGAAATATTTTGA-AAATAAATTTGT
1 AAAAGGGGGAGAAATATTTTGAGAAATAAACTTGT
* *
874003 AAAATGGGGAGAGATATTTTGAGAAATAAACTTGT
1 AAAAGGGGGAGAAATATTTTGAGAAATAAACTTGT
874038 TTTATAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
34 20 0.65
35 11 0.35
ACGTcount: A:0.45, C:0.01, G:0.25, T:0.29
Consensus pattern (35 bp):
AAAAGGGGGAGAAATATTTTGAGAAATAAACTTGT
Found at i:878171 original size:13 final size:13
Alignment explanation
Indices: 878153--878178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
878143 CAATTTGGGA
878153 TGTATCGATACAT
1 TGTATCGATACAT
878166 TGTATCGATACAT
1 TGTATCGATACAT
878179 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:878175 original size:33 final size:32
Alignment explanation
Indices: 878133--878196 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
878123 TACAAGCTAA
878133 TGTATCGATACAAT-TTGGGATGTATCGATACAT
1 TGTATCGATAC-ATCTTGGG-TGTATCGATACAT
*
878166 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
878197 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:878324 original size:20 final size:19
Alignment explanation
Indices: 878301--878339 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
878291 CTGTGCATTA
878301 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
*
878321 TGTATTGATACATTTAAGG
1 TGTATCGATACATTTAAGG
878340 GTTTTGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:880738 original size:13 final size:13
Alignment explanation
Indices: 880720--880744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
880710 ATAAACCCTT
880720 TGTATCGATACAC
1 TGTATCGATACAC
880733 TGTATCGATACA
1 TGTATCGATACA
880745 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:885070 original size:16 final size:16
Alignment explanation
Indices: 885049--885082 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
885039 GAGTCACTAT
885049 CACTCCACGTGGCTAC
1 CACTCCACGTGGCTAC
885065 CACTCCACGTGGCTAC
1 CACTCCACGTGGCTAC
885081 CA
1 CA
885083 TGGCTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.44, G:0.18, T:0.18
Consensus pattern (16 bp):
CACTCCACGTGGCTAC
Found at i:886934 original size:13 final size:13
Alignment explanation
Indices: 886916--886941 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
886906 CAATTTGGGA
886916 TGTATCGATACAT
1 TGTATCGATACAT
886929 TGTATCGATACAT
1 TGTATCGATACAT
886942 CTTATGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:887098 original size:20 final size:19
Alignment explanation
Indices: 887075--887113 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
887065 TTGTGCATTA
887075 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
887095 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
887114 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:891236 original size:15 final size:16
Alignment explanation
Indices: 891216--891249 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
891206 GAAAAGAAGG
*
891216 AAACTTTATATTTC-A
1 AAACTTCATATTTCGA
891231 AAACTTCATATTTCGA
1 AAACTTCATATTTCGA
891247 AAA
1 AAA
891250 AATAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (16 bp):
AAACTTCATATTTCGA
Found at i:892539 original size:84 final size:83
Alignment explanation
Indices: 892459--892666 Score: 233
Period size: 84 Copynumber: 2.5 Consensus size: 83
892449 GAGTTTATCG
* * * * *
892459 GGCACTAAACTAATAGGTAAACAAAGGATGAAAGGTTGACTAAGGCTAAACTAATAAGTCAATAA
1 GGCACTAAACCAACAGGTAAACAAAGGATAAAAGGTTGACCAAGGCTAAACCAATAAGTCAA-AA
892524 AGGGTAAAGGCGTTTACTA
65 AGGGTAAAGGCGTTTACTA
** * * *
892543 GGCACTAAACCGCCAGGTAAACAAAGGATAAAAGGTTGACCAAGGCTGAACCATTAAGTCAACAA
1 GGCACTAAACCAACAGGTAAACAAAGGATAAAAGGTTGACCAAGGCTAAACCAATAAGTCAAAAA
* * *
892608 GGGTAAAAG-ATTTACTT
66 GGGTAAAGGCGTTTACTA
* * * *
892625 GGGACTAAGCCGACAGGTAAAC-AA-GAGAAAAGGTTGACCAAG
1 GGCACTAAACCAACAGGTAAACAAAGGATAAAAGGTTGACCAAG
892667 ATGAAACTGA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 17 0.16
81 2 0.02
82 25 0.23
83 10 0.09
84 53 0.50
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.18
Consensus pattern (83 bp):
GGCACTAAACCAACAGGTAAACAAAGGATAAAAGGTTGACCAAGGCTAAACCAATAAGTCAAAAA
GGGTAAAGGCGTTTACTA
Found at i:892684 original size:80 final size:83
Alignment explanation
Indices: 892404--892703 Score: 208
Period size: 84 Copynumber: 3.6 Consensus size: 83
892394 TAAAAGGGAT
* * * *
892404 AAAAGGTTGACC-AGGACTGAACGAACAAGCCAACACAA-GATAAAAGAGTTTA-TCGGGCACTA
1 AAAAGGTTGACCAAGGA-TGAACCATCAAGTCAA-ACAAGGATAAAAGA-TTTACT-AGGCACTA
** *
892466 AACTAATAGGTAAACAAAGGATG
62 AACCGACAGGTAAACAAAGGA-G
* * * * * * *
892489 -AAAGGTTGACTAAGGCTAAACTAAT-AAGTCAATA-AAGGGTAAAGGCGTTTACTAGGCACTAA
1 AAAAGGTTGACCAAGGATGAAC-CATCAAGTCAA-ACAAGGATAAAAG-ATTTACTAGGCACTAA
* *
892551 ACCGCCAGGTAAACAAAGGAT
63 ACCGACAGGTAAACAAAGGAG
* * * * * *
892572 AAAAGGTTGACCAAGGCTGAACCATTAAGTC-AACAAGGGTAAAAGATTTACTTGGGACTAAGCC
1 AAAAGGTTGACCAAGGATGAACCATCAAGTCAAACAAGGATAAAAGATTTACTAGGCACTAAACC
892636 GACAGGTAAAC-AA-GAG
66 GACAGGTAAACAAAGGAG
* * *
892652 AAAAGGTTGACCAA-GATGAAAC-TGACAAGTCAAATAAGGATAAAAGACTTAC
1 AAAAGGTTGACCAAGGATGAACCAT--CAAGTCAAACAAGGATAAAAGATTTAC
892704 CCAAGACTAG
Statistics
Matches: 172, Mismatches: 32, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
78 1 0.01
79 6 0.03
80 21 0.12
81 19 0.11
82 26 0.15
83 15 0.09
84 79 0.46
85 5 0.03
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (83 bp):
AAAAGGTTGACCAAGGATGAACCATCAAGTCAAACAAGGATAAAAGATTTACTAGGCACTAAACC
GACAGGTAAACAAAGGAG
Found at i:893057 original size:84 final size:85
Alignment explanation
Indices: 892889--893210 Score: 260
Period size: 85 Copynumber: 3.8 Consensus size: 85
892879 AATTCGACAT
* * *
892889 GTAAACAATGAGATGAAGGTTGATCGAAGACTGAGCTAACAAGTCACCGTAGGTGTAAGGGGTTT
1 GTAAAGAATGAGATAAAGGTTGATCGAAGACTGAGCTAACAAGTCACCATAGGTGTAAGGGGTTT
* ** * *
892954 ATCGGGGACTGAGCCGATA-
66 ACCAAGGACAGAACCGATAG
* * *
892973 GTAAAGAATGAGATAAAGGTTGAGT-GGAGACTGAGTTGACAAGTCACCATAGGTGTAAGGGGTT
1 GTAAAGAATGAGATAAAGGTTGA-TCGAAGACTGAGCTAACAAGTCACCATAGGTGTAAGGGGTT
*
893037 TACCAAGGACAGAACTGATAG
65 TACCAAGGACAGAACCGATAG
* * * * * * **
893058 GTAAATG-AGGAGATAAAGGTTGACCCAAGACTGAGCTGATAGGTCACCATAAGG-GTATTGGGT
1 GTAAA-GAATGAGATAAAGGTTGATCGAAGACTGAGCTAACAAGTCACCAT-AGGTGTAAGGGGT
* * ** * **
893121 TTACCGAGTATTGAGCCGACGG
64 TTACCAAGGACAGAACCGATAG
* * * * * *
893143 GTAAAAAAGGAGA-AGAAGATTAATCGAAGACTGAGCTAACAAGTTACCATAGAG-GTAATGGGT
1 GTAAAGAATGAGATA-AAGGTTGATCGAAGACTGAGCTAACAAGTCACCATAG-GTGTAAGGGGT
893206 TTACC
64 TTACC
893211 GGGGACTGAA
Statistics
Matches: 191, Mismatches: 39, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
84 73 0.38
85 114 0.60
86 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.21
Consensus pattern (85 bp):
GTAAAGAATGAGATAAAGGTTGATCGAAGACTGAGCTAACAAGTCACCATAGGTGTAAGGGGTTT
ACCAAGGACAGAACCGATAG
Found at i:893404 original size:47 final size:47
Alignment explanation
Indices: 893305--894096 Score: 578
Period size: 47 Copynumber: 16.8 Consensus size: 47
893295 ATGAGGATGA
* * * *
893305 AAAGAGTTTGACCAGG-ACTAATGCCAATATAGTCAAAC-AAAGGTG
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * ** * * *
893350 AGAAGAGTTTGACTAGGTCCCAACGCCAACGTAGTTAAATGAGGGTTG
1 A-AAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* ** * *
893398 AAAGAGTTTGACCAGGTTTTAATGCCTAA-ATAGTGAAACGAGAGTAG
1 AAAGAGTTTGACTAGGTCCTAATGCC-AATATAGTCAAACGAGAGTTG
* *
893445 AAGGAGTTTGACTAGGTCCTAAAGCCAATATAGTCAAACGAGAG-TG
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * * *
893491 GAAGAAGTTTGACTAGGTCCTAATGCCAATATAATCAAATGA-AGATG
1 AAAG-AGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * *
893538 AGAAGAGTTTGACTAGGTCTTAATGCCAATAAAGTCAAAGGAGAG-T-
1 A-AAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * * *
893584 AAATTTGAGTTTGACCAGGTCTTAATGCCAATAGAGTCAAATGAGAG-T-
1 AAA---GAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * ** * * *
893632 AAATTTGAGTTTGACCAGGTCCTTACACCAATATAGTTAAATGAG-GATAG
1 AAA---GAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAG-TTG
* * * * *
893682 AATGAGTTTGACCAGGTCCTAACGCCAATATAGTCTAACGAGAGTGG
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * * *
893729 AAAGAGTTTAACTAGGTCCTAATGCCAATACAGTCAAATGAG-GATG
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * **
893775 AGAAGAGTTTGACCAAGTCCTAACACCAATATAGTCAAACGAGAG-T-
1 A-AAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * ** *
893821 AAATTTGAGTTTAACTAGGTCCTTACACCAATATAGTCAAACGAG-GATGG
1 AAA---GAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAG-TTG
* * * * * *
893871 AAAGAGTTTAACCAGGTCCTAATGCCAATACAATCAAATGAGAGTGG
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * * * * *
893918 AAAGAGTTTGACTAGGTGCTAACGCTAATACAGTCAAATGAG-GATG
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
**
893964 AGAAGAGTTTGACTAGGTTTTAATGCCAATATAGTCAAACGAGAG-T-
1 A-AAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
* * * *
894010 AAATTTGAGTTTGACCAAGTCCTCATGCCAATAGT-GTCAAACGATGA-TGG
1 AAA---GAGTTTGACTAGGTCCTAATGCCAATA-TAGTCAAACGA-GAGTTG
* **
894060 AAAGAGTTTAACTAGGTCCTAACACCAATATAGTCAA
1 AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAA
894097 TGATGAAAAT
Statistics
Matches: 603, Mismatches: 109, Indels: 68
0.77 0.14 0.09
Matches are distributed among these distances:
45 7 0.01
46 31 0.05
47 394 0.65
48 160 0.27
49 3 0.00
50 8 0.01
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (47 bp):
AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAACGAGAGTTG
Found at i:893458 original size:94 final size:93
Alignment explanation
Indices: 893305--894096 Score: 638
Period size: 94 Copynumber: 8.4 Consensus size: 93
893295 ATGAGGATGA
* *
893305 AAAGAGTTTGACCAGG-ACTAATGCCAATATAGTCAAAC-AAAGGTGAGAAGAGTTTGACTAGGT
1 AAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGA-GT-AGAAGAGTTTGACTAGGT
* ** *
893368 CCCAACGCCAACGTAGTTAAATGAGGGTTG
64 CCTAACGCCAATATAGTCAAATGAGGGTTG
** *
893398 AAAGAGTTTGACCAGGTTTTAATGCCTAA-ATAGTGAAACGAGAGTAGAAGGAGTTTGACTAGGT
1 AAAGAGTTTGACCAGGTCCTAATGCC-AATATAGTCAAACGAGAGTAGAA-GAGTTTGACTAGGT
* * *
893462 CCTAAAGCCAATATAGTCAAACGAGAG-TG
64 CCTAACGCCAATATAGTCAAATGAGGGTTG
* * * *
893491 GAAGAAGTTTGACTAGGTCCTAATGCCAATATAATCAAATGA-AGATGAGAAGAGTTTGACTAGG
1 AAAG-AGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAG-T-AGAAGAGTTTGACTAGG
* * * * *
893555 TCTTAATGCCAATAAAGTCAAAGGAGAG-T-
63 TCCTAACGCCAATATAGTCAAATGAGGGTTG
* * * *
893584 AAATTTGAGTTTGACCAGGTCTTAATGCCAATAGAGTCAAATGAGAGTA-AATTTGAGTTTGACC
1 AAA---GAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTAGAA---GAGTTTGACT
* * * * *
893648 AGGTCCTTACACCAATATAGTTAAATGAGGATAG
60 AGGTCCTAACGCCAATATAGTCAAATGAGGGTTG
* * * * *
893682 AATGAGTTTGACCAGGTCCTAACGCCAATATAGTCTAACGAGAGTGGAAAGAGTTTAACTAGGTC
1 AAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTAG-AAGAGTTTGACTAGGTC
* * *
893747 CTAATGCCAATACAGTCAAATGA-GGATG
65 CTAACGCCAATATAGTCAAATGAGGGTTG
* ** *
893775 AGAAGAGTTTGACCAAGTCCTAACACCAATATAGTCAAACGAGAGTA-AATTTGAGTTTAACTAG
1 A-AAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTAGAA---GAGTTTGACTAG
* * * * *
893839 GTCCTTACACCAATATAGTCAAACGAGGATGG
62 GTCCTAACGCCAATATAGTCAAATGAGGGTTG
* * * * * *
893871 AAAGAGTTTAACCAGGTCCTAATGCCAATACAATCAAATGAGAGTGGAAAGAGTTTGACTAGGTG
1 AAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTAG-AAGAGTTTGACTAGGTC
* * *
893936 CTAACGCTAATACAGTCAAATGA-GGATG
65 CTAACGCCAATATAGTCAAATGAGGGTTG
* ** * *
893964 AGAAGAGTTTGACTAGGTTTTAATGCCAATATAGTCAAACGAGAGTA-AATTTGAGTTTGACCAA
1 A-AAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTAGAA---GAGTTTGACTAG
* * * * * *
894028 GTCCTCATGCCAATAGT-GTCAAACGATGATGG
62 GTCCTAACGCCAATA-TAGTCAAATGAGGGTTG
* * **
894060 AAAGAGTTTAACTAGGTCCTAACACCAATATAGTCAA
1 AAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAA
894097 TGATGAAAAT
Statistics
Matches: 557, Mismatches: 110, Indels: 62
0.76 0.15 0.09
Matches are distributed among these distances:
92 4 0.01
93 39 0.07
94 259 0.46
95 209 0.38
96 40 0.07
97 4 0.01
98 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (93 bp):
AAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTAGAAGAGTTTGACTAGGTCC
TAACGCCAATATAGTCAAATGAGGGTTG
Found at i:893830 original size:142 final size:138
Alignment explanation
Indices: 893305--894096 Score: 710
Period size: 142 Copynumber: 5.6 Consensus size: 138
893295 ATGAGGATGA
* * ** *
893305 AAAGAGTTTGACCAGG-ACTAATGCCAATATAGTCAAACAAAGGTGAGAAGAGTTTGACTAGGTC
1 AAAGAGTTTGACCAGGTCCTAATGCCAATACAGTCAAA-TGAGATG-GAAGAGTTTGACTAGGTC
* * ** * * * *
893369 CCAACGCCAACGTAGTTAAATGAGGGTTGA-AAGAGTTTGACCAGGTTTTAATGCCTAA-ATAGT
64 CTAACACCAATATAGTCAAATGA-GGATGAGAAGAGTTTGACTAGGTCTTAATGCC-AATATAGT
*
893432 GAAACGAGAGTAG
127 CAAACGAGAGT-G
* * * * *
893445 AAGGAGTTTGACTAGGTCCTAAAGCCAATATAGTCAAACGAGAGTGGAAGAAGTTTGACTAGGTC
1 AAAGAGTTTGACCAGGTCCTAATGCCAATACAGTCAAATGAGA-TGGAAG-AGTTTGACTAGGTC
** * * *
893510 CTAATGCCAATATAATCAAATGAAGATGAGAAGAGTTTGACTAGGTCTTAATGCCAATAAAGTCA
64 CTAACACCAATATAGTCAAATGAGGATGAGAAGAGTTTGACTAGGTCTTAATGCCAATATAGTCA
*
893575 AAGGAGAGT-
129 AACGAGAGTG
* * * *
893584 AAATTTGAGTTTGACCAGGTCTTAATGCCAATAGAGTCAAATGAGA-GTAAATTTGAGTTTGACC
1 AAA---GAGTTTGACCAGGTCCTAATGCCAATACAGTCAAATGAGATG-GAA---GAGTTTGACT
* * * * *
893648 AGGTCCTTACACCAATATAGTTAAATGAGGAT-AGAATGAGTTTGACCAGGTCCTAACGCCAATA
59 AGGTCCTAACACCAATATAGTCAAATGAGGATGAGAA-GAGTTTGACTAGGTCTTAATGCCAATA
*
893712 TAGTCTAACGAGAGTGG
123 TAGTCAAACGAGAGT-G
* * * *
893729 AAAGAGTTTAACTAGGTCCTAATGCCAATACAGTCAAATGAGGATGAGAAGAGTTTGACCAAGTC
1 AAAGAGTTTGACCAGGTCCTAATGCCAATACAGTCAAATGA-GATG-GAAGAGTTTGACTAGGTC
* *
893794 CTAACACCAATATAGTCAAACGA-GA-GTA-AATTTGAGTTTAACTAGGTCCTTACA--CCAATA
64 CTAACACCAATATAGTCAAATGAGGATG-AGAA---GAGTTTGACTAGGT-CTTA-ATGCCAATA
893854 TAGTCAAACGAG-GATGG
123 TAGTCAAACGAGAG-T-G
* * *
893871 AAAGAGTTTAACCAGGTCCTAATGCCAATACAATCAAATGAGAGTGGAAAGAGTTTGACTAGGTG
1 AAAGAGTTTGACCAGGTCCTAATGCCAATACAGTCAAATGAGA-TGG-AAGAGTTTGACTAGGTC
* * * *
893936 CTAACGCTAATACAGTCAAATGAGGATGAGAAGAGTTTGACTAGGTTTTAATGCCAATATAGTCA
64 CTAACACCAATATAGTCAAATGAGGATGAGAAGAGTTTGACTAGGTCTTAATGCCAATATAGTCA
894001 AACGAGAGT-
129 AACGAGAGTG
* * ** * *
894010 AAATTTGAGTTTGACCAAGTCCTCATGCCAATAGTGTCAAACGATGATGGAAAGAGTTTAACTAG
1 AAA---GAGTTTGACCAGGTCCTAATGCCAATACAGTCAAATGA-GATGG-AAGAGTTTGACTAG
894075 GTCCTAACACCAATATAGTCAA
61 GTCCTAACACCAATATAGTCAA
894097 TGATGAAAAT
Statistics
Matches: 539, Mismatches: 77, Indels: 70
0.79 0.11 0.10
Matches are distributed among these distances:
139 6 0.01
140 34 0.06
141 161 0.30
142 247 0.46
143 80 0.15
144 8 0.01
145 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (138 bp):
AAAGAGTTTGACCAGGTCCTAATGCCAATACAGTCAAATGAGATGGAAGAGTTTGACTAGGTCCT
AACACCAATATAGTCAAATGAGGATGAGAAGAGTTTGACTAGGTCTTAATGCCAATATAGTCAAA
CGAGAGTG
Found at i:893887 original size:189 final size:189
Alignment explanation
Indices: 893297--894096 Score: 867
Period size: 189 Copynumber: 4.2 Consensus size: 189
893287 CACGTTGAAT
* * *
893297 GAGGATGAAAAGAGTTTGACCAGG-ACTAATGCCAATATAGTCAAAC-AAAG-GTGAGAAGAGTT
1 GAGGATGGAAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTG-GAGAAGAGTT
* *** * * *
893359 TGACTAGGTCCCAACGCCAACGTAGTTAAATGAGGGTTGAAAGAGTTTGACCAGGTTTTAATGCC
65 TGACTAGGTCCTAACGCCAATACAGTCAAATGA-GGATGAAAGAGTTTGACCAGGTCTTAATGCC
* * * *
893424 TAA-ATAGTGAAACGAGAGTAGAA--GGAGTTTGACTAGGTCC-TAAAGCCAATATAGTCAAAC
129 -AATATAGTCAAACGAGAGTA-AATTTGAGTTTGACCAGGTCCTTACA-CCAATATAGTCAAAC
* * *
893484 GA-GAGTGG-AAGAAGTTTGACTAGGTCCTAATGCCAATATAATCAAATGA-AGAT-GAGAAGAG
1 GAGGA-TGGAAAG-AGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAG-TGGAGAAGAG
* * * *
893545 TTTGACTAGGTCTTAATGCCAATAAAGTCAAAGGA-GA-GTAAATTTGAGTTTGACCAGGTCTTA
63 TTTGACTAGGTCCTAACGCCAATACAGTCAAATGAGGATG-AAA---GAGTTTGACCAGGTCTTA
* * *
893608 ATGCCAATAGAGTCAAATGAGAGTAAATTTGAGTTTGACCAGGTCCTTACACCAATATAGTTAAA
124 ATGCCAATATAGTCAAACGAGAGTAAATTTGAGTTTGACCAGGTCCTTACACCAATATAGTCAAA
*
893673 T
189 C
* * * *
893674 GAGGATAGAATGAGTTTGACCAGGTCCTAACGCCAATATAGTCTAACGAGAGTGGA-AAGAGTTT
1 GAGGATGGAAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTGGAGAAGAGTTT
* * * * **
893738 AACTAGGTCCTAATGCCAATACAGTCAAATGAGGATGAGAAGAGTTTGACCAAGTCCTAACACCA
66 GACTAGGTCCTAACGCCAATACAGTCAAATGAGGATGA-AAGAGTTTGACCAGGTCTTAATGCCA
* *
893803 ATATAGTCAAACGAGAGTAAATTTGAGTTTAACTAGGTCCTTACACCAATATAGTCAAAC
130 ATATAGTCAAACGAGAGTAAATTTGAGTTTGACCAGGTCCTTACACCAATATAGTCAAAC
* * * *
893863 GAGGATGGAAAGAGTTTAACCAGGTCCTAATGCCAATACAATCAAATGAGAGTGGA-AAGAGTTT
1 GAGGATGGAAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTGGAGAAGAGTTT
* * * *
893927 GACTAGGTGCTAACGCTAATACAGTCAAATGAGGATGAGAAGAGTTTGACTAGGTTTTAATGCCA
66 GACTAGGTCCTAACGCCAATACAGTCAAATGAGGATGA-AAGAGTTTGACCAGGTCTTAATGCCA
* * **
893992 ATATAGTCAAACGAGAGTAAATTTGAGTTTGACCAAGTCCTCATGCCAATAGT-GTCAAAC
130 ATATAGTCAAACGAGAGTAAATTTGAGTTTGACCAGGTCCTTACACCAATA-TAGTCAAAC
* * * **
894052 GATGATGGAAAGAGTTTAACTAGGTCCTAACACCAATATAGTCAA
1 GAGGATGGAAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAA
894097 TGATGAAAAT
Statistics
Matches: 517, Mismatches: 74, Indels: 42
0.82 0.12 0.07
Matches are distributed among these distances:
185 1 0.00
186 9 0.02
187 15 0.03
188 60 0.12
189 313 0.61
190 102 0.20
191 14 0.03
192 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (189 bp):
GAGGATGGAAAGAGTTTGACCAGGTCCTAATGCCAATATAGTCAAACGAGAGTGGAGAAGAGTTT
GACTAGGTCCTAACGCCAATACAGTCAAATGAGGATGAAAGAGTTTGACCAGGTCTTAATGCCAA
TATAGTCAAACGAGAGTAAATTTGAGTTTGACCAGGTCCTTACACCAATATAGTCAAAC
Found at i:894123 original size:32 final size:33
Alignment explanation
Indices: 894086--894200 Score: 108
Period size: 35 Copynumber: 3.4 Consensus size: 33
894076 TCCTAACACC
894086 AATATAGTC-AATGATGA-AAATGGGTTTGACCA
1 AATATAGTCAAATGATGAGAAA-GGGTTTGACCA
*
894118 AATATAGTCAAATGATGATGGAAAGTGTTTGACCA
1 AATATAGTCAAATGATGA--GAAAGGGTTTGACCA
* * * *
894153 GATACAGTCAAATGATGATGGAAAGTGTTTGACTA
1 AATATAGTCAAATGATGA--GAAAGGGTTTGACCA
* *
894188 GATACAGTCAAAT
1 AATATAGTCAAAT
894201 AGTGATGAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
32 9 0.12
33 8 0.11
35 55 0.73
36 3 0.04
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (33 bp):
AATATAGTCAAATGATGAGAAAGGGTTTGACCA
Found at i:894207 original size:38 final size:35
Alignment explanation
Indices: 894109--894226 Score: 157
Period size: 35 Copynumber: 3.4 Consensus size: 35
894099 ATGAAAATGG
* *
894109 GTTTGACCAAATATAGTCAAATGATGATGGAAAGT
1 GTTTGACCAGATACAGTCAAATGATGATGGAAAGT
894144 GTTTGACCAGATACAGTCAAATGATGATGGAAAGT
1 GTTTGACCAGATACAGTCAAATGATGATGGAAAGT
* * **
894179 GTTTGACTAGATACAGTCAAAT-AGTGATGAAAACA
1 GTTTGACCAGATACAGTCAAATGA-TGATGGAAAGT
*
894214 GTTTGACTAGATA
1 GTTTGACCAGATA
894227 TAATTAAATG
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
34 1 0.01
35 75 0.99
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (35 bp):
GTTTGACCAGATACAGTCAAATGATGATGGAAAGT
Found at i:894257 original size:29 final size:29
Alignment explanation
Indices: 894224--894297 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
894214 GTTTGACTAG
*
894224 ATATAATTAAATGAGAGAA-ATTTGATCGA
1 ATATAGTTAAATGAGA-AAGATTTGATCGA
* *
894253 GTATAGTTTAATGATGAAAGATTTGATCGA
1 ATATAGTTAAATGA-GAAAGATTTGATCGA
*
894283 ATATAGTTAAGTGAG
1 ATATAGTTAAATGAG
894298 GGAGGACTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
29 14 0.38
30 23 0.62
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.34
Consensus pattern (29 bp):
ATATAGTTAAATGAGAAAGATTTGATCGA
Found at i:896015 original size:53 final size:53
Alignment explanation
Indices: 895910--896014 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
895900 AGTTATATGA
* * * *
895910 CCCTTATCTCTTTTCATGACATCTTTTCAGGTTACTTTAAAAAGTATTTTTTT
1 CCCTTATCTATTTTCATGACATCATTTCAAGTTACTTCAAAAAGTATTTTTTT
* * * *
895963 CCCTTGTCTATTTTCATGACATCATTTCAAGTTTC-TCACAAAGTTTTTTTTT
1 CCCTTATCTATTTTCATGACATCATTTCAAGTTACTTCAAAAAGTATTTTTTT
896015 TTATAAGCCT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 14 0.32
53 30 0.68
ACGTcount: A:0.22, C:0.20, G:0.08, T:0.50
Consensus pattern (53 bp):
CCCTTATCTATTTTCATGACATCATTTCAAGTTACTTCAAAAAGTATTTTTTT
Found at i:901944 original size:17 final size:18
Alignment explanation
Indices: 901913--901946 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
901903 GTCAATGCAT
901913 GAAAAAACCAGAAGAAAA
1 GAAAAAACCAGAAGAAAA
*
901931 GAAAACACCA-AAGAAA
1 GAAAAAACCAGAAGAAA
901947 GCAAATCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.15, G:0.15, T:0.00
Consensus pattern (18 bp):
GAAAAAACCAGAAGAAAA
Found at i:903144 original size:165 final size:162
Alignment explanation
Indices: 902707--903257 Score: 520
Period size: 165 Copynumber: 3.3 Consensus size: 162
902697 TTAAATAAAT
*
902707 TGAATTTTTCAAAACTAATTT-AT-TGAGAGTTAAATAAAAATATTAT-ATGAATTTAAAAAATT
1 TGAATTTTTCAAAACTAATTTAATATGA-A-TTAAATAATAATATT-TGATGAATTTAAAAAA-T
* * * * **
902769 TTAAATCAAGAAAAATCCCCCCAAAATATTTACAGAGTAGAAAACTTGATTTTTAGAAATAGGGG
62 TAAAACCAAGAAAAATCCCCCAAAAATATTTACGGAGTAGAAAACTCAATTTTTAGAAATAGGGG
* *
902834 CATTTCAAGGAAAAAATAAAAAAACTCATGAAAATAAA
127 AATTTAAAGGAAAAAAT-AAAAAACTCATGAAAAT-AA
* * * * *
902872 TGAATTTTTCAAAACTAATTTAATATGAGTTAAGTGATGATATTTGATGAATATTAAAAAATTCA
1 TGAATTTTTCAAAACTAATTTAATATGAATTAAATAATAATATTTGATGAAT-TTAAAAAATTAA
* * ** * ** * **
902937 AACCGAGAAAAACCCCCTCAAAAACCTTTATGGAACAGAAAACTCAATTTTTCAGAAAAAAAAGG
65 AACCAAGAAAAATCCCC-CAAAAATATTTACGGAGTAGAAAACTCAATTTTT-AG-AAATAGGGG
* * *
903002 AATTTTAA-GAGAAAATGAAAAACTCATG-AAATAA
127 AATTTAAAGGAAAAAATAAAAAACTCATGAAAATAA
* * * *
903036 CTGAATTTTTGAAAACTGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAGTTAA
1 -TGAATTTTTCAAAACTAATTTAATATGAATTAAATAATAATATTTGATGAATTTAAAAAATT-A
* * **
903101 AAACCAAAAAAAATCCTCCCGAAAATATTTACGGAGTAGAAAACTCCGTATTTTAGAAATAGGGG
64 AAACCAAGAAAAATCC-CCCAAAAATATTTACGGAGTAGAAAACTCAAT-TTTTAGAAATAGGGG
903166 AATTTCAAAGGAAAAAATAAAAAACTCATGAAAATGAA
127 AATTT-AAAGGAAAAAATAAAAAACTCATGAAAAT-AA
* * * ** * * *
903204 TGAA-TTTTAAGAAATTGATTTAACCTAAATTAAATGATAATATTTAATGAATTT
1 TGAATTTTTCA-AAACTAATTTAATATGAATTAAATAATAATATTTGATGAATTT
903258 TAAATATTTT
Statistics
Matches: 312, Mismatches: 58, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
164 22 0.07
165 144 0.46
166 75 0.24
167 57 0.18
168 14 0.04
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (162 bp):
TGAATTTTTCAAAACTAATTTAATATGAATTAAATAATAATATTTGATGAATTTAAAAAATTAAA
ACCAAGAAAAATCCCCCAAAAATATTTACGGAGTAGAAAACTCAATTTTTAGAAATAGGGGAATT
TAAAGGAAAAAATAAAAAACTCATGAAAATAA
Found at i:903842 original size:20 final size:19
Alignment explanation
Indices: 903814--903851 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
903804 TTCTCAAGTT
903814 TTTCAAAAAATCTCAAAAAA
1 TTTCAAAAAAT-TCAAAAAA
*
903834 TTTCTAAAAATTCAAAAA
1 TTTCAAAAAATTCAAAAA
903852 TTGACAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (19 bp):
TTTCAAAAAATTCAAAAAA
Found at i:904393 original size:20 final size:20
Alignment explanation
Indices: 904368--904422 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
904358 AATAGCCTGC
* *
904368 ATGTATTGATACATTGAAGA
1 ATGTATCGATACATTAAAGA
*
904388 ATGTATCGATATATTAAAGA
1 ATGTATCGATACATTAAAGA
904408 ATGTATCGATACATT
1 ATGTATCGATACATT
904423 TGGGTCAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTAAAGA
Found at i:904465 original size:52 final size:51
Alignment explanation
Indices: 904385--904503 Score: 157
Period size: 52 Copynumber: 2.3 Consensus size: 51
904375 GATACATTGA
* * * * *
904385 AGAATGTATCGATATATTAAAGAATGTATCGATACATTTGGGTCAAAAACCT
1 AGAATGTATCGATACAATAAAGAATGTATCAATACATTTGGCTC-AAAACCG
* * *
904437 AGAATGTATTGATACAATAAATAATGTATTAATACATTTGGCTCAAAACCG
1 AGAATGTATCGATACAATAAAGAATGTATCAATACATTTGGCTCAAAACCG
904488 AGAATGTATCGATACA
1 AGAATGTATCGATACA
904504 TTTTCTTTCC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
51 21 0.36
52 37 0.64
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (51 bp):
AGAATGTATCGATACAATAAAGAATGTATCAATACATTTGGCTCAAAACCG
Found at i:905334 original size:52 final size:52
Alignment explanation
Indices: 905249--905399 Score: 178
Period size: 52 Copynumber: 2.9 Consensus size: 52
905239 GAGGGTATGA
* * * * * *
905249 TGCCAATGTGTTACTTCAAGGGTAGCAACATTGGATTTAAAGATGATAAGGG
1 TGCCAATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATGATAAGAG
* * * *
905301 TGCCAATGTGCTGATTCAAGGCTAGCGATATTGGGCTTAAAAATGATAAGAG
1 TGCCAATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATGATAAGAG
* *
905353 T-CCTAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAGATGAT
1 TGCC-AATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATGAT
905400 GCCACCAATT
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (52 bp):
TGCCAATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATGATAAGAG
Found at i:905510 original size:38 final size:37
Alignment explanation
Indices: 905468--905545 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 37
905458 TTTAAAAAGG
* *
905468 AAAAAAGAAAACGA-TGCCACCAACCTGTGTGGGCTT
1 AAAAAAAAAAAAGAGTGCCACCAACCTGTGTGGGCTT
905504 AAAAAAAAAAAAGAGGTGCCACCAACCTGTGTGGGCTT
1 AAAAAAAAAAAAGA-GTGCCACCAACCTGTGTGGGCTT
905542 AAAA
1 AAAA
905546 GGAGAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 12 0.32
38 26 0.68
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (37 bp):
AAAAAAAAAAAAGAGTGCCACCAACCTGTGTGGGCTT
Found at i:905633 original size:41 final size:42
Alignment explanation
Indices: 905581--905668 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
905571 GGCGAGCTTT
* * *
905581 AAAAAAAAAAGGTTGCCACCGACTTGTATGGGCATTA-AAGGG
1 AAAAAAAAAGGGGTGCCACCAACTTGTATGGGCATTAGAA-GG
* *
905623 AAAAAGAAAGGGGTGCCACCAACTTGTATGGGCTTTAGAAGG
1 AAAAAAAAAGGGGTGCCACCAACTTGTATGGGCATTAGAAGG
905665 AAAA
1 AAAA
905669 GGGTGCTGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (42 bp):
AAAAAAAAAGGGGTGCCACCAACTTGTATGGGCATTAGAAGG
Found at i:905700 original size:37 final size:37
Alignment explanation
Indices: 905633--906356 Score: 242
Period size: 37 Copynumber: 19.0 Consensus size: 37
905623 AAAAAGAAAG
*
905633 GGGTGCCACCAACTTGTATG--GGCTTT-AGAAGGAAAA
1 GGGTGCCACCAAC-T-TATGCAGGCTTTGAGAAGAAAAA
**
905669 GGGTGCTGCCAACTTATGCAGGCTTTGAGAAGAAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTGAGAAGAAAAA
*
905706 GAGTGCCACCAACTTGTATG--GGCTTTGAGAA-AGAAAA
1 GGGTGCCACCAAC-T-TATGCAGGCTTTGAGAAGA-AAAA
* *** * *
905743 GGTTGTTGCCAACTTGTGCAGGGTTTGAGAA-AAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTGAGAAGAAAAA
* * *
905779 GGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAGAAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTG--AG----AAGAAAAA
* * **
905822 GGGTGTCACCAACTTGTGTGGGCTTTGAGAA-AGAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTGAGAAGA-AAAA
* * * *
905859 GAGTGCCGCCAACTTGTAC-GGACTTTG-GAAAGAAAAA
1 GGGTGCCACCAACTTATGCAGG-CTTTGAG-AAGAAAAA
* *
905896 AGGTGCCGA-CAACTTGTATG--GGCTTTGAAAGAAAAAAAA
1 GGGTGCC-ACCAAC-T-TATGCAGGCTTTG--AGAAGAAAAA
**
905935 GGGTGCCACCAACTTATATAGGCTTTGAAAGAAAAAAGAAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTG--AG----AAGAAAAA
905978 GGGTGCCACCAACTTGAATG--GGCTTT-AGAAGGAAAAA
1 GGGTGCCACCAACTT--ATGCAGGCTTTGAGAA-GAAAAA
* * *
906015 -TGTGCCACCAACTTGTGC-GAGCTTTAAGAAG-AAAA
1 GGGTGCCACCAACTTATGCAG-GCTTTGAGAAGAAAAA
* * ** * ***
906050 GAGCGCCATTAACTTGTTTGGGCTTTGAAAGAAAAAAGAAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTG--AG----AAGAAAAA
* * * *
906093 AGGTGCCACCAACTTGTGTAGGCTTTGAGAAGGAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTGAGAAGAAAAA
* *
906130 GGGTGCCGCCAACTTGTGC-GAGCTTT-AGAA-AAAAGA
1 GGGTGCCACCAACTTATGCAG-GCTTTGAGAAGAAAA-A
* * * ** *
906166 TGTGTGCTATCAACTTATGTGGGCTTTGAAAGAAAAAAAA
1 -GGGTGCCACCAACTTATGCAGGCTTTG--AGAAGAAAAA
* * *
906206 GAGTGCTACCAACTTGTATG-A-GCTTTGAAAGGAAAAAAAA
1 GGGTGCCACCAAC-T-TATGCAGGCTTTG--A-GAAGAAAAA
* *
906246 AGGTGCCACCAACTTGTGTCA-GCTTT-AGAAGGAAAAA
1 GGGTGCCACCAACTTATG-CAGGCTTTGAGAA-GAAAAA
* * * * * * *
906283 -GGTGTCGCCAACTTTTGCGGGCTTTGAAAAGAAGAT
1 GGGTGCCACCAACTTATGCAGGCTTTGAGAAGAAAAA
* * ** *
906319 GAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAA
1 GGGTGCCACCAACTTATGCAGGCTTTGAGAA-GAAAAA
906357 AGAAAACGAC
Statistics
Matches: 532, Mismatches: 91, Indels: 128
0.71 0.12 0.17
Matches are distributed among these distances:
34 6 0.01
35 13 0.02
36 115 0.22
37 192 0.36
38 19 0.04
39 55 0.10
40 34 0.06
41 12 0.02
42 5 0.01
43 79 0.15
45 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (37 bp):
GGGTGCCACCAACTTATGCAGGCTTTGAGAAGAAAAA
Found at i:905705 original size:116 final size:112
Alignment explanation
Indices: 905482--906356 Score: 408
Period size: 116 Copynumber: 7.7 Consensus size: 112
905472 AAGAAAACGA
* * * *
905482 TGCCACCAACCTGTGTGGGCTTAAA--AAAAA-AAAAGAGGTGCCACCAACCTGTGTGGGC-TTA
1 TGCCACCAACTTGTATGGGCTTAAAGGAAAAAGAAAAG-GGTGCCACCAACTTGTATGGGCTTTA
* * * * * *
905543 AAAGGAGAAAAAATGTGCTGCCAGCTTAGGCGAGCTTT-A-AAAAAAAAAGG
65 GAA-G-G-AAAAAGGTGCCGCCAACTTATGCG-GCTTTGAGAAGAAAAAAGG
* *
905593 TTGCCACCGACTTGTATGGGCATTAAAGGGAAAAAGAAAGGGGTGCCACCAACTTGTATGGGCTT
1 -TGCCACCAACTTGTATGGGC-TTAAA-GGAAAAAGAAAAGGGTGCCACCAACTTGTATGGGCTT
* *
905658 TAGAAGGAAAAGGGTGCTGCCAACTTATGCAGGCTTTGAGAAG-AAAAAGAG
63 TAGAAGGAAAAAGGTGCCGCCAACTTATGC-GGCTTTGAGAAGAAAAAAG-G
* * * ***
905709 TGCCACCAACTTGTATGGGCTT---TGAGAAAGAAAAGGTTGTTGCCAACTTGTGCA-GGG-TTT
1 TGCCACCAACTTGTATGGGCTTAAAGGAAAAAGAAAAGGGTGCCACCAACTTGT--ATGGGCTTT
* * * * *
905769 GAGAA--AAAAAGGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAGAAAAAGGG
64 -AGAAGGAAAAA-GGTGCCGCCAACTTATG-CGGCTTTG--AG----AAGAAAAAAGG
* * * * * * * * *
905825 TGTCACCAACTTGTGTGGGCTT---TGAGAAAGAAAAGAGTGCCGCCAACTTGTACGGACTTTGG
1 TGCCACCAACTTGTATGGGCTTAAAGGAAAAAGAAAAGGGTGCCACCAACTTGTATGGGCTTTAG
* *
905887 AAAGAAAAAAGGTGCCGACAACTTGTATG-GGCTTTGA-AAGAAAAAAAAGGG
66 -AAGGAAAAAGGTGCCGCCAAC-T-TATGCGGCTTTGAGAAG--AAAAAA-GG
* * * *
905938 TGCCACCAACTTATATAGGCTTTGAAAGAAAAAAGAAAAAGGGTGCCACCAACTTGAATGGGCTT
1 TGCCACCAACTTGTATGGGC-TT-AAAGGAAAAAG-AAAAGGGTGCCACCAACTTGTATGGGCTT
* * * * *
906003 TAGAAGGAAAAATGTGCCACCAACTTGTGCGAGCTTTAAGAAGAAAAGA-G
63 TAGAAGGAAAAAGGTGCCGCCAACTTATGCG-GCTTTGAGAAGAAAAAAGG
* ** * * * * *
906053 CGCCATTAACTTGTTTGGGCTTTGAAAGAAAAAAGAAAAAAGGTGCCACCAACTTGTGTAGGCTT
1 TGCCACCAACTTGTATGGGC-TT-AAAGGAAAAAG-AAAAGGGTGCCACCAACTTGTATGGGCTT
* * *
906118 TGAGAAGGAAAAGGGTGCCGCCAACTTGTGCGAGCTTT-AGAA-AAAAGATGTG
63 T-AGAAGGAAAAAGGTGCCGCCAACTTATGCG-GCTTTGAGAAGAAAA-AAG-G
* * * * * * *
906170 TGCTATCAACTTATGTGGGCTTTGAAA-G-AAAA-AAAAGAGTGCTACCAACTTGTATGAGCTTT
1 TGCCACCAACTTGTATGGGC-TT-AAAGGAAAAAGAAAAGGGTGCCACCAACTTGTATGGGCTTT
* * * *
906232 -GAAAGGAAAAAAAAAGGTGCCACCAACTTGTGTCAGCTTT-AGAAGGAAAAAGG
64 AG-AAGG----AAAAAGGTGCCGCCAACTTATG-CGGCTTTGAGAAGAAAAAAGG
* * * ** * * * *
906285 TGTCGCCAACTTTTGCGGGCTT---TG-AAAAGAAGATGAGTGCCACCAACTTGTGTGGGCTTTG
1 TGCCACCAACTTGTATGGGCTTAAAGGAAAAAGAA-AAGGGTGCCACCAACTTGTATGGGCTTT-
*
906346 AAAAGGAAAAA
64 AGAAGGAAAAA
906357 AGAAAACGAC
Statistics
Matches: 603, Mismatches: 103, Indels: 116
0.73 0.13 0.14
Matches are distributed among these distances:
109 4 0.01
110 53 0.09
111 13 0.02
112 31 0.05
113 71 0.12
114 39 0.06
115 112 0.19
116 150 0.25
117 64 0.11
118 33 0.05
119 33 0.05
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (112 bp):
TGCCACCAACTTGTATGGGCTTAAAGGAAAAAGAAAAGGGTGCCACCAACTTGTATGGGCTTTAG
AAGGAAAAAGGTGCCGCCAACTTATGCGGCTTTGAGAAGAAAAAAGG
Found at i:905854 original size:45 final size:43
Alignment explanation
Indices: 905774--905990 Score: 116
Period size: 43 Copynumber: 5.4 Consensus size: 43
905764 GGTTTGAGAA
905774 AAAAAGGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAG
1 AAAAAGGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAG
** * * *
905817 AAAAAGGGTGTCACCAACTTGTGTGGGCTTTG--AG---AAAG
1 AAAAAGGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAG
* * *
905855 -AAAAGAGTGCCGCCAA-CT-TGTACGGACTTTG---G---AAAG
1 AAAAAGGGTACCACCAACCTATGTA-GG-CTTTGAAAGAAAAAAG
* *
905891 AAAAAAGGTGCCGA-CAA-CT-TGTATGGGCTTTGAAAG---AAA-
1 AAAAAGGGTACC-ACCAACCTATGTA--GGCTTTGAAAGAAAAAAG
* * *
905930 AAAAAGGGTGCCACCAACTTATATAGGCTTTGAAAGAAAAAAG
1 AAAAAGGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAG
*
905973 AAAAAGGGTGCCACCAAC
1 AAAAAGGGTACCACCAAC
905991 TTGAATGGGC
Statistics
Matches: 142, Mismatches: 17, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
35 3 0.02
36 8 0.06
37 41 0.29
38 7 0.05
39 25 0.18
40 5 0.04
41 5 0.04
42 3 0.02
43 45 0.32
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (43 bp):
AAAAAGGGTACCACCAACCTATGTAGGCTTTGAAAGAAAAAAG
Done.