genome.fa.s2301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2301
Parameters: 2 7 7 80 10 50 1000
Length:  132231

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412--508	23	4.3	22	81	16	101	30	0	1	68	0.97
410--498	11	8.1	12	75	17	79	32	0	1	66	0.99
473--505	17	1.9	17	93	0	57	27	0	3	69	1.03
416--498	43	2.0	42	85	7	114	30	0	1	68	0.97
412--497	33	2.6	33	89	9	122	30	0	1	68	0.97
446--505	17	3.6	17	73	13	52	30	0	1	68	0.99
990--1053	18	3.4	18	68	19	58	46	6	0	46	1.27
975--1052	39	2.0	39	97	0	147	47	7	1	43	1.40
1323--1356	16	2.1	17	88	5	52	61	0	0	38	0.96
2250--2292	19	2.3	19	88	8	61	48	0	0	51	1.00
2348--2384	13	3.2	12	88	11	51	59	2	0	37	1.12
2619--2657	18	2.2	18	90	0	60	61	0	2	35	1.10
3188--3235	19	2.5	19	80	19	55	35	2	0	62	1.07
3258--3384	50	2.5	50	77	13	127	56	0	0	41	1.10
3331--3397	23	3.3	20	73	16	59	55	0	0	44	0.99
3346--3432	38	2.1	42	81	14	101	50	0	0	49	1.00
3356--3457	46	2.2	46	77	6	109	51	0	0	48	1.00
4751--4811	30	2.1	29	81	6	70	40	0	0	59	0.98
4781--4823	23	1.9	22	85	4	59	41	0	0	58	0.98
5438--5519	30	2.7	30	71	17	80	41	0	2	56	1.13
6110--6141	5	6.4	5	100	0	64	59	0	0	40	0.97
7806--7989	33	5.6	33	75	7	176	14	28	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7796--8022	66	3.4	66	70	7	183	14	28	24	32	1.95
7789--8065	33	8.5	33	74	10	162	17	27	23	31	1.97
8035--8099	33	2.0	33	84	0	85	26	24	13	35	1.93
13508--13559	22	2.3	23	80	3	61	46	1	1	50	1.23
13515--13557	23	1.9	22	85	4	59	48	2	2	46	1.27
13646--13684	6	6.3	6	82	5	51	58	0	0	41	0.98
13649--13684	13	2.9	12	87	4	54	58	0	0	41	0.98
13649--13696	25	1.9	25	86	0	69	60	2	2	35	1.20
14484--14517	2	17.0	2	100	0	68	50	0	0	50	1.00
17441--17484	3	14.7	3	100	0	88	68	0	0	31	0.90
20118--20169	17	3.1	16	77	17	52	36	0	0	63	0.95
23004--23032	2	14.5	2	100	0	58	48	0	0	51	1.00
23426--23821	199	2.0	200	88	1	598	45	13	6	33	1.71
27943--27988	20	2.2	21	92	3	76	47	0	0	52	1.00
27959--28015	12	4.8	12	75	12	55	42	0	0	57	0.98
29704--29761	30	1.9	31	82	10	75	31	1	3	63	1.21
29706--29769	20	2.9	23	73	20	64	32	1	1	64	1.13
31170--31215	19	2.5	19	78	3	58	43	2	0	54	1.12
32430--32460	2	15.5	2	93	0	53	45	3	0	51	1.17
32601--32651	11	4.6	11	76	9	50	64	1	1	31	1.15
32597--32656	28	2.1	28	84	6	77	65	1	1	31	1.13
32636--32688	17	3.2	17	76	15	65	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33166--33243	28	2.6	29	80	13	86	47	0	0	52	1.00
34611--34640	2	15.0	2	100	0	60	50	0	0	50	1.00
36744--36798	19	2.8	20	81	13	69	61	1	0	36	1.06
37032--37064	2	17.0	2	93	6	59	51	0	48	0	1.00
41879--41925	13	3.5	13	83	13	60	59	4	0	36	1.17
42080--42115	17	2.1	17	94	0	63	30	13	2	52	1.55
42148--42173	2	13.0	2	100	0	52	50	0	0	50	1.00
46100--46165	34	1.9	34	84	6	89	57	0	0	42	0.98
46667--46694	2	14.0	2	100	0	56	50	0	0	50	1.00
47106--47147	19	2.2	19	86	0	57	47	0	2	50	1.14
48681--48719	16	2.4	16	83	8	53	48	0	0	51	1.00
49086--49162	38	2.0	38	80	12	86	48	1	0	50	1.09
49090--49141	16	3.1	16	80	17	61	48	0	0	51	1.00
49662--49717	26	2.2	26	81	12	62	62	1	1	33	1.16
49719--49753	17	2.1	17	88	0	52	34	5	0	60	1.21
52119--52674	278	2.0	276	98	0	1076	39	10	14	34	1.82
52753--52777	2	12.5	2	100	0	50	52	0	0	48	1.00
53007--53079	31	2.4	30	88	4	112	69	0	2	27	1.02
53009--53054	22	2.2	20	88	7	65	69	0	2	28	1.00
53009--53093	11	8.1	10	73	11	55	68	1	3	27	1.13
53943--54025	34	2.4	34	82	8	96	56	2	0	40	1.12
54261--54290	15	2.0	15	100	0	60	46	13	0	40	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55316--55374	20	2.9	19	73	9	55	37	3	10	49	1.54
55776--55825	18	2.9	17	72	18	50	58	2	0	40	1.10
56499--56572	37	2.0	37	94	0	130	40	5	2	51	1.39
57876--57909	14	2.5	13	86	9	50	41	2	0	55	1.15
57895--57932	17	2.2	18	85	4	51	26	0	0	73	0.83
58566--58609	17	2.6	17	75	3	54	45	0	0	54	0.99
59151--59178	2	14.0	2	100	0	56	50	0	0	50	1.00
59444--59486	22	1.9	23	85	4	61	58	0	2	39	1.11
59588--59629	20	2.2	19	86	4	57	42	7	7	42	1.59
61698--61845	77	1.9	79	85	2	210	52	4	6	35	1.49
61803--61919	24	4.5	25	72	17	71	58	0	0	40	1.10
61750--61962	65	3.1	66	76	13	164	55	1	2	39	1.25
61856--61920	33	2.0	33	84	6	87	56	0	0	43	0.99
62438--62473	18	1.9	19	94	5	65	58	0	0	41	0.98
63685--63723	20	1.9	21	84	5	53	48	2	0	48	1.15
63681--63746	25	2.6	25	74	13	62	50	1	3	45	1.26
67691--67732	19	2.2	19	86	4	57	30	16	16	35	1.92
71179--71217	18	2.1	19	85	4	53	51	0	0	48	1.00
77562--77593	3	10.7	3	100	0	64	65	0	0	34	0.93
80720--80744	8	3.1	8	100	0	50	12	0	0	88	0.53
80845--80933	26	3.5	26	76	14	78	51	1	0	47	1.08
81292--81392	25	3.7	26	75	18	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81281--81350	20	3.4	21	77	15	76	48	0	0	51	1.00
81689--81715	2	13.5	2	100	0	54	51	0	0	48	1.00
82080--82114	17	2.1	17	89	10	54	54	0	0	45	0.99
89624--89656	2	16.5	2	100	0	66	48	0	51	0	1.00
94649--94718	35	2.0	35	88	0	104	37	17	15	30	1.91
95991--96054	13	4.8	13	75	12	51	37	0	0	62	0.95
96042--96087	24	2.0	24	86	4	67	45	0	0	54	0.99
96198--96247	6	8.0	6	79	16	57	52	0	0	48	1.00
96198--96243	20	2.3	20	85	3	67	54	0	0	45	0.99
96233--96282	18	2.8	19	79	11	61	42	0	0	58	0.98
96242--96304	31	2.0	32	84	9	85	42	1	0	55	1.09
107050--107081	15	2.1	15	100	0	64	56	0	0	43	0.99
108494--108546	17	3.4	16	82	7	65	60	1	0	37	1.08
109075--109107	16	2.0	17	88	5	50	60	3	3	33	1.27
109985--110018	15	2.2	16	89	5	52	73	2	2	20	1.09
110758--110798	21	2.0	21	85	9	57	53	2	0	43	1.13
114989--115143	76	2.0	76	93	2	267	52	7	3	36	1.45
116319--116380	24	2.6	23	78	16	63	62	3	1	32	1.20
116363--116413	20	2.4	21	83	6	59	52	0	5	41	1.25
116694--116724	2	15.5	2	100	0	62	51	0	0	48	1.00
117098--117140	11	4.2	11	85	14	65	53	0	0	46	1.00
117115--117204	28	3.2	29	80	9	96	41	0	1	57	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117239--117284	19	2.5	19	75	3	58	39	2	0	58	1.10
117239--117308	36	1.9	36	82	5	88	34	4	1	60	1.25
117371--117410	12	3.3	12	92	0	71	45	0	20	35	1.51
117858--117932	33	2.3	33	84	9	91	61	0	1	37	1.05
117858--117902	14	3.1	16	75	18	53	66	0	0	33	0.92
118480--118556	18	3.9	19	72	14	57	46	0	0	53	1.00
118479--118553	20	3.8	19	75	18	64	46	0	0	53	1.00
118535--118565	13	2.3	14	94	5	55	41	0	0	58	0.98
118873--118942	33	2.0	34	84	13	90	52	2	2	41	1.31
120629--120660	2	17.0	2	87	12	50	50	0	0	50	1.00

Tables:   1   2