genome.fa.s2306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2306
Parameters: 2 7 7 80 10 50 1000
Length:  92666

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6384--6414	12	2.5	12	94	5	53	0	25	0	74	0.82
6988--7013	2	13.0	2	100	0	52	50	0	0	50	1.00
8315--8385	30	2.4	29	85	4	97	53	0	2	43	1.15
8750--8837	16	5.5	16	74	14	74	64	1	0	34	1.01
8758--8825	23	2.8	23	80	17	75	66	0	0	33	0.92
8751--8837	32	2.7	31	81	11	104	65	1	0	33	1.00
8761--8834	38	2.0	37	82	12	89	66	0	0	33	0.92
10903--10945	2	21.5	2	95	0	77	0	51	0	48	1.00
14415--14446	2	16.5	2	93	6	57	50	0	0	50	1.00
14700--14760	23	2.6	24	80	17	74	68	1	0	29	0.99
14683--14771	35	2.5	36	80	14	121	66	1	0	32	0.99
14691--14764	25	3.2	22	71	19	62	67	1	0	31	0.99
14691--14831	44	3.2	44	74	21	127	63	1	0	35	1.04
14756--14820	32	2.0	32	88	11	96	60	1	0	38	1.07
14698--14863	61	2.7	63	74	11	153	62	1	0	36	1.03
15171--15211	2	20.5	2	94	0	73	51	0	0	48	1.00
18561--19085	186	2.8	191	89	6	780	30	12	12	44	1.79
22064--22104	14	2.9	15	86	10	52	43	7	0	48	1.30
23219--23251	14	2.4	14	94	0	57	39	0	0	60	0.97
23260--23285	12	2.2	12	100	0	52	34	7	0	57	1.27
23314--23381	18	3.4	20	73	17	52	39	1	0	58	1.07
23314--23394	23	3.5	23	72	16	69	38	1	0	60	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23266--23395	12	10.8	12	70	21	69	38	2	0	58	1.16
23266--23402	58	2.3	60	78	10	138	38	2	0	57	1.19
25174--25347	56	3.1	56	67	16	169	43	5	8	43	1.56
26275--26455	13	13.2	14	73	7	122	25	18	24	30	1.98
26288--26351	28	2.3	28	83	2	76	26	21	25	26	2.00
26303--26364	15	4.3	15	81	8	67	27	20	22	29	1.99
26276--26455	55	3.3	53	76	8	166	26	18	25	30	1.98
30514--30560	19	2.3	20	85	7	60	31	0	2	65	1.04
30907--30959	3	17.7	3	96	0	97	33	0	30	35	1.58
30980--31016	3	12.3	3	94	0	65	2	0	29	67	1.04
34103--34147	14	3.1	14	80	3	54	73	0	13	13	1.10
36162--36270	43	2.5	43	89	0	164	41	12	30	15	1.85
36553--36732	30	5.8	32	77	7	158	22	17	28	31	1.96
36557--36744	63	3.1	63	77	13	162	22	17	29	30	1.96
36556--39120	29	87.2	30	73	12	374	25	15	28	30	1.96
36921--39117	29	75.1	29	75	9	1505	25	15	27	30	1.96
36946--38889	86	22.0	95	71	16	263	25	15	27	31	1.96
36918--37930	143	6.8	151	75	12	462	25	15	27	31	1.96
36817--37150	123	2.7	123	85	4	424	24	15	30	28	1.96
37129--38025	57	14.9	66	72	13	287	25	15	27	31	1.96
37925--37996	38	1.9	37	86	8	101	33	12	22	31	1.91
37820--38834	143	6.9	152	74	10	397	25	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37782--38135	181	2.0	181	82	2	442	25	15	27	31	1.96
37963--39120	57	20.2	56	76	6	818	25	16	28	30	1.96
38476--38605	66	2.0	66	82	0	161	26	14	30	28	1.95
40279--40335	23	2.4	24	85	8	73	5	12	8	73	1.23
40307--40359	20	2.7	18	77	16	52	9	7	5	77	1.12
40305--40389	22	3.7	23	72	15	68	8	8	9	74	1.23
45746--45775	15	1.9	16	93	6	53	0	10	3	86	0.67
45856--45898	20	2.2	20	83	8	52	13	39	13	32	1.85
46006--46043	14	2.5	16	87	8	53	18	0	15	65	1.27
49583--49638	13	4.3	13	75	20	55	44	0	0	55	0.99
52981--53028	5	10.2	5	77	18	50	64	0	0	35	0.94
52993--53031	21	1.9	20	89	5	60	64	0	0	35	0.94
53025--53112	28	3.2	26	72	16	61	44	0	0	55	0.99
53105--53150	18	2.5	19	79	13	51	65	0	0	34	0.93
53641--53714	30	2.5	30	77	12	73	55	0	0	44	0.99
53679--53734	22	2.4	25	82	8	73	60	0	0	39	0.97
53687--53735	20	2.5	20	86	6	64	59	0	0	40	0.98
53680--53777	6	16.3	6	69	16	51	62	0	0	37	0.96
54189--54247	15	3.4	18	73	21	56	52	0	0	47	1.00
54953--55021	19	3.6	19	80	5	68	46	1	0	52	1.09
55073--55097	2	12.5	2	100	0	50	48	0	0	52	1.00
60191--60215	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62392--62421	2	15.0	2	100	0	60	50	0	0	50	1.00
70046--70165	52	2.3	52	94	0	204	29	18	17	35	1.94
70066--70185	52	2.3	52	88	2	179	30	17	19	33	1.95
70174--70198	13	1.9	13	100	0	50	36	16	16	32	1.90
70267--70291	13	1.9	13	100	0	50	32	16	16	36	1.90
70245--70311	33	2.0	33	88	0	98	40	13	11	34	1.81
71807--71851	22	2.1	22	91	4	74	44	17	8	28	1.79
72103--72138	2	18.0	2	100	0	72	50	0	0	50	1.00
73204--73279	34	2.2	36	83	9	104	47	0	1	51	1.09
73551--73601	10	5.0	10	77	17	52	58	1	1	37	1.20
73775--73815	2	20.5	2	100	0	82	51	0	0	48	1.00
73965--74004	19	2.0	20	85	4	55	32	0	0	67	0.91
74307--74345	2	19.5	2	100	0	78	48	0	0	51	1.00
75380--75416	3	12.3	3	100	0	74	67	0	0	32	0.91
78564--78604	14	2.9	14	92	0	73	36	0	12	51	1.40
78995--79043	20	2.5	19	90	9	80	40	0	0	59	0.98
79001--79053	20	2.8	20	88	8	67	45	0	0	54	0.99
80913--80967	27	1.9	30	89	10	89	81	3	10	3	0.93
80913--80959	15	3.3	15	77	14	55	78	4	12	4	1.04
80928--80967	15	2.7	15	80	0	53	82	2	12	2	0.87
81714--81789	12	6.9	11	75	15	52	39	2	48	9	1.49
81713--81798	24	3.8	24	72	17	85	41	2	45	10	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81704--81822	42	2.8	42	90	0	184	43	2	45	8	1.47
87141--87181	16	2.6	16	88	0	64	53	4	4	36	1.44
87902--87990	44	2.0	44	91	0	142	35	15	12	35	1.85
89700--89856	81	1.9	81	81	0	188	51	15	5	27	1.65
91144--91290	75	2.0	75	100	0	294	47	2	3	46	1.33
92130--92186	28	2.1	27	86	3	78	57	0	1	40	1.09

Tables:   1

The End!