Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold231
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1009718
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 1 of 7
Found at i:464 original size:19 final size:19
Alignment explanation
Indices: 407--466 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 19
397 AATATAAAAA
*
407 TATATTTTA-AATTTAAATA
1 TATATTTTATAA-TTAAATT
426 T-TATTTT-T-ATTAATATT
1 TATATTTTATAATTAA-ATT
443 TATATTTTATAATTAAATT
1 TATATTTTATAATTAAATT
462 TATAT
1 TATAT
467 AAATTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
16 4 0.11
17 4 0.11
18 12 0.34
19 10 0.29
20 5 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TATATTTTATAATTAAATT
Found at i:3786 original size:17 final size:17
Alignment explanation
Indices: 3751--3786 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
3741 AAAAAATTAA
*
3751 ATATATTTATGTTAGAT
1 ATATATTTATATTAGAT
*
3768 ATATATTTATATTATAT
1 ATATATTTATATTAGAT
3785 AT
1 AT
3787 TTACACTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
ATATATTTATATTAGAT
Found at i:4805 original size:15 final size:15
Alignment explanation
Indices: 4760--4802 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 15
4750 TGATCATAAC
4760 TTTG-CTTTTTG-A-
1 TTTGTCTTTTTGTAT
4772 TTT-TCTTTTTGTAT
1 TTTGTCTTTTTGTAT
4786 TTTGTCTTTTT-TAT
1 TTTGTCTTTTTGTAT
4800 TTT
1 TTT
4803 TGTAATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 10 0.37
13 1 0.04
14 9 0.33
15 7 0.26
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.77
Consensus pattern (15 bp):
TTTGTCTTTTTGTAT
Found at i:4832 original size:6 final size:6
Alignment explanation
Indices: 4821--4855 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
4811 TTGTAATAAT
*
4821 TTTTTG TTTTTG TTTTTG TTTTTT TTTTTG CTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG -TTTT
4856 CAGTCGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 22 0.85
7 4 0.15
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:7763 original size:15 final size:15
Alignment explanation
Indices: 7730--7763 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7720 CATATATTTC
* *
7730 TAAATTAAATATAAT
1 TAAATTAAATAAAAA
7745 TAAATTAAATAAAAA
1 TAAATTAAATAAAAA
7760 TAAA
1 TAAA
7764 ATTTATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAATTAAATAAAAA
Found at i:11530 original size:19 final size:18
Alignment explanation
Indices: 11488--11534 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
11478 GAAAATTTGC
*
11488 TAATTTTTTTATATATAA
1 TAATATTTTTATATATAA
*
11506 -AA-ATTTTTATAATGTAA
1 TAATATTTTTAT-ATATAA
11523 TAATATTTTTAT
1 TAATATTTTTAT
11535 CAAATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 2 0.08
19 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TAATATTTTTATATATAA
Found at i:13236 original size:2 final size:2
Alignment explanation
Indices: 13229--13258 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
13219 AGCATCGCAA
13229 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
13259 GGGGTAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18118 original size:18 final size:18
Alignment explanation
Indices: 18092--18127 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
18082 TTCAACCTTG
*
18092 GGTGCAAATGATTCATCT
1 GGTGAAAATGATTCATCT
18110 GGTGAAAATGATTCATCT
1 GGTGAAAATGATTCATCT
18128 AAATGAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (18 bp):
GGTGAAAATGATTCATCT
Found at i:20828 original size:2 final size:2
Alignment explanation
Indices: 20821--20846 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20811 ATTTACAACC
20821 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
20847 CACAAATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22229 original size:29 final size:29
Alignment explanation
Indices: 22192--22249 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
22182 GACAGTATGG
22192 TTAGAGATGTGTGCTACCATTAATTGGTT
1 TTAGAGATGTGTGCTACCATTAATTGGTT
22221 TTAGAGATGTGTGCTACCATTAATTGGTT
1 TTAGAGATGTGTGCTACCATTAATTGGTT
22250 CTTCAATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (29 bp):
TTAGAGATGTGTGCTACCATTAATTGGTT
Found at i:28214 original size:28 final size:28
Alignment explanation
Indices: 28174--28231 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
28164 AGCATAGAGT
28174 TATGATTTATTATTCTTTTTTGTACATA
1 TATGATTTATTATTCTTTTTTGTACATA
28202 TATGATTTATTATTCTTTTTTGTACATA
1 TATGATTTATTATTCTTTTTTGTACATA
28230 TA
1 TA
28232 AACCATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (28 bp):
TATGATTTATTATTCTTTTTTGTACATA
Found at i:29767 original size:21 final size:21
Alignment explanation
Indices: 29737--29784 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
29727 AATAGTGTTA
29737 AATC-AAAGTAGATTGTTTGG
1 AATCAAAAGTAGATTGTTTGG
29757 AATCAAAAGTAGATTGTTTGG
1 AATCAAAAGTAGATTGTTTGG
29778 AATCAAA
1 AATCAAA
29785 TTTATCTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (21 bp):
AATCAAAAGTAGATTGTTTGG
Found at i:30869 original size:19 final size:19
Alignment explanation
Indices: 30842--30884 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
30832 TTATAAATAA
* * *
30842 ATTTAAATAAAAATATATT
1 ATTTTAATAAAAAAATACT
30861 ATTTTAATAAAAAAATACT
1 ATTTTAATAAAAAAATACT
30880 ATTTT
1 ATTTT
30885 GACTTGATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTTAATAAAAAAATACT
Found at i:32943 original size:51 final size:51
Alignment explanation
Indices: 32853--32969 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 51
32843 AGAAATTGTA
* * * *
32853 GGGTTGGAGTATTCTCAAAGATGAAAAATTTGACGTTTTGGAAGTAAAAATG
1 GGGTTAGAGTA-TCTCAAAGATGAAAAATTCGACATTTTGAAAGTAAAAATG
* * *
32905 GGGTTAGAGTATCTTAGAGATTAAAAATTCGACATTTTGAAAGTAAAAATG
1 GGGTTAGAGTATCTCAAAGATGAAAAATTCGACATTTTGAAAGTAAAAATG
** *
32956 AAGTTAAAGTATCT
1 GGGTTAGAGTATCT
32970 ATTCGGAGAT
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
51 45 0.82
52 10 0.18
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (51 bp):
GGGTTAGAGTATCTCAAAGATGAAAAATTCGACATTTTGAAAGTAAAAATG
Found at i:33029 original size:80 final size:76
Alignment explanation
Indices: 32903--33171 Score: 231
Period size: 80 Copynumber: 3.4 Consensus size: 76
32893 GAAGTAAAAA
* * * * * * *
32903 TGGGGTTAGAGTATCTTAGAGATTAAAAATTCGACATTTTGAAAGTAAAAATGAAGTTAAAGTAT
1 TGGGGTTAGAGTATC-CAGAGATGAAAAATTTGGCATTTAG-AAGTAAAAATGAGGTTAGAGTAT
* *
32968 CTATTCGGAGATAG
64 CT-CTCGGAGATGG
* *
32982 TGGGGTT-GAAGTATCCCTAGAGATGAAAAATTTGGCATTCTAGAAGTAGAAAT-AGGGTTGGAG
1 TGGGGTTAG-AGTAT-CC-AGAGATGAAAAATTTGGCATT-TAGAAGTAAAAATGA-GGTTAGAG
* *
33045 TATCCCCTCGGATATGG
61 TAT-CTCTCGGAGATGG
* * *
33062 TGGGGTTAGAGTATCCAGAGAT-AAAAACTTTGGCATTATGGAAATAAAAATGGGGTTAGAGTAT
1 TGGGGTTAGAGTATCCAGAGATGAAAAA-TTTGGCATT-TAGAAGTAAAAATGAGGTTAGAGTAT
*
33126 CTCTCGAAGATGG
64 CTCTCGGAGATGG
*
33139 TGGGGGTTGGAGTATCCCAGAGATG-AAAATTTG
1 T-GGGGTTAGAGTAT-CCAGAGATGAAAAATTTG
33172 ATGTTTTGGA
Statistics
Matches: 155, Mismatches: 23, Indels: 25
0.76 0.11 0.12
Matches are distributed among these distances:
77 16 0.10
78 52 0.34
79 27 0.17
80 56 0.36
81 4 0.03
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (76 bp):
TGGGGTTAGAGTATCCAGAGATGAAAAATTTGGCATTTAGAAGTAAAAATGAGGTTAGAGTATCT
CTCGGAGATGG
Found at i:33125 original size:78 final size:77
Alignment explanation
Indices: 32903--33171 Score: 238
Period size: 78 Copynumber: 3.4 Consensus size: 77
32893 GAAGTAAAAA
** * * * ** *
32903 TGGGGTTAGAGTATCTTAGAGATTAAAAATTCGACATTTTGAAAGTAAAAATGAAGTTAAAGTAT
1 TGGGGTTAGAGTATCCCAGAGA-TAAAAATTTGGCATTTAGAAA-TAAAAATGGGGTTAGAGTAT
* * *
32968 CTATTCGGAGATAG
64 CCACTCGGAGATGG
* * * *
32982 TGGGGTT-GAAGTATCCCTAGAGATGAAAAATTTGGCATTCTAGAAGTAGAAATAGGGTTGGAGT
1 TGGGGTTAG-AGTATCCC-AGAGAT-AAAAATTTGGCATT-TAGAAATAAAAATGGGGTTAGAGT
* *
33046 ATCCCCTCGGATATGG
62 ATCCACTCGGAGATGG
*
33062 TGGGGTTAGAGTAT-CCAGAGATAAAAACTTTGGCATTATGGAAATAAAAATGGGGTTAGAGTAT
1 TGGGGTTAGAGTATCCCAGAGATAAAAA-TTTGGCATT-TAGAAATAAAAATGGGGTTAGAGTAT
* *
33126 -CTCTCGAAGATGG
64 CCACTCGGAGATGG
* *
33139 TGGGGGTTGGAGTATCCCAGAGATGAAAATTTG
1 T-GGGGTTAGAGTATCCCAGAGATAAAAATTTG
33172 ATGTTTTGGA
Statistics
Matches: 154, Mismatches: 28, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
77 16 0.10
78 53 0.34
79 28 0.18
80 52 0.34
81 5 0.03
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (77 bp):
TGGGGTTAGAGTATCCCAGAGATAAAAATTTGGCATTTAGAAATAAAAATGGGGTTAGAGTATCC
ACTCGGAGATGG
Found at i:33182 original size:78 final size:77
Alignment explanation
Indices: 32903--33245 Score: 237
Period size: 78 Copynumber: 4.4 Consensus size: 77
32893 GAAGTAAAAA
* ** * * * ** *
32903 TGGGGTTAGAGTATCTTAGAGATTAAAAATTCGACATTTT-GAAAGTAAAAATGAAGTTAAAGTA
1 TGGGGTTGGAGTATCCCAGAGA-TGAAAATTTGGCATTTTGGAAA-TAAAAATGGGGTTAGAGTA
* *
32967 TCTATTCGGAGATAG
64 TCT-CTCGGAGATGG
* * * * * * *
32982 TGGGGTTGAAGTATCCCTAGAGATGAAAAATTTGGCATTCTAGAAGTAGAAATAGGGTTGGAGTA
1 TGGGGTTGGAGTATCCC-AGAGATG-AAAATTTGGCATTTTGGAAATAAAAATGGGGTTAGAGTA
* *
33047 TCCCCTCGGATATGG
64 T-CTCTCGGAGATGG
* * *
33062 TGGGGTTAGAGTAT-CCAGAGATAAAAACTTTGGCATTATGGAAATAAAAATGGGGTTAGAGTAT
1 TGGGGTTGGAGTATCCCAGAGATGAAAA-TTTGGCATTTTGGAAATAAAAATGGGGTTAGAGTAT
*
33126 CTCTCGAAGATGG
65 CTCTCGGAGATGG
*** * * * *
33139 TGGGGGTTGGAGTATCCCAGAGATGAAAATTTGATGTTTTGGAAGT-AAAATCGAGG-TGGCGTA
1 T-GGGGTTGGAGTATCCCAGAGATGAAAATTTGGCATTTTGGAAATAAAAAT-GGGGTTAGAGTA
*
33202 TCTCCTCAGAGATGG
64 TCT-CTCGGAGATGG
* *
33217 TAGGATTGGAGTATCTCC-GAAGATGAAAA
1 TGGGGTTGGAGTATC-CCAG-AGATGAAAA
33246 ATTCGATGTT
Statistics
Matches: 208, Mismatches: 45, Indels: 23
0.75 0.16 0.08
Matches are distributed among these distances:
77 41 0.20
78 84 0.40
79 28 0.13
80 51 0.25
81 4 0.02
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (77 bp):
TGGGGTTGGAGTATCCCAGAGATGAAAATTTGGCATTTTGGAAATAAAAATGGGGTTAGAGTATC
TCTCGGAGATGG
Found at i:35681 original size:4 final size:4
Alignment explanation
Indices: 35667--35709 Score: 68
Period size: 4 Copynumber: 10.5 Consensus size: 4
35657 TTTCATATTC
*
35667 TCTT TCTTT TCTT TCTT TCTT TCTC TCTT TCTT TCTT TCTT TC
1 TCTT TC-TT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
35710 GTTTGATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 32 0.89
5 4 0.11
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
TCTT
Found at i:37778 original size:19 final size:19
Alignment explanation
Indices: 37736--37781 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37726 TTATTATTAT
* * *
37736 ATTTATGTAACTTAACTAA
1 ATTTATGTAAATAAAATAA
*
37755 TTTTATGTAAATAAAATAA
1 ATTTATGTAAATAAAATAA
37774 ATTTATGT
1 ATTTATGT
37782 TTTACAACTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (19 bp):
ATTTATGTAAATAAAATAA
Found at i:38198 original size:19 final size:19
Alignment explanation
Indices: 38165--38216 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
38155 AATCATAAAC
38165 ATTTATGTAACTTATAATAT
1 ATTTATGTAA-TTATAATAT
38185 ATTTATGTAATTATAATAT
1 ATTTATGTAATTATAATAT
* *
38204 TTTTGTGT-ATTAT
1 ATTTATGTAATTAT
38217 TACATAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 5 0.17
19 15 0.50
20 10 0.33
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (19 bp):
ATTTATGTAATTATAATAT
Found at i:38819 original size:32 final size:32
Alignment explanation
Indices: 38760--38820 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
38750 ATATAAAATT
* *
38760 ATAAAACACAAATATTATTAAGTATATTATAA
1 ATAAAACACAAATAATAATAAGTATATTATAA
*
38792 ATAAAACATAAATAATAATAA-TGATATTA
1 ATAAAACACAAATAATAATAAGT-ATATTA
38821 ATTAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.04
32 24 0.96
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (32 bp):
ATAAAACACAAATAATAATAAGTATATTATAA
Found at i:40052 original size:23 final size:21
Alignment explanation
Indices: 40013--40061 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
40003 CAATTATATA
*
40013 ATATATATTAGT-TTTTTGTTT
1 ATATATATTAGTGTTTTT-ATT
40034 ATATATATTATGTAGTTTTTATT
1 ATATATATTA-GT-GTTTTTATT
40057 ATATA
1 ATATA
40062 AAGAATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.42
22 2 0.08
23 7 0.29
24 5 0.21
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (21 bp):
ATATATATTAGTGTTTTTATT
Found at i:40061 original size:25 final size:24
Alignment explanation
Indices: 40005--40062 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
39995 TCTGTTTTCA
40005 ATTATATAATATATATTAGTTTTT
1 ATTATATAATATATATTAGTTTTT
*
40029 -TGTTTAT-ATATATTATGTAGTTTTT
1 AT-TATATAATATA-TAT-TAGTTTTT
40054 ATTATATAA
1 ATTATATAA
40063 AGAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
23 6 0.22
24 7 0.26
25 12 0.44
26 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (24 bp):
ATTATATAATATATATTAGTTTTT
Found at i:41039 original size:20 final size:20
Alignment explanation
Indices: 41014--41062 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
41004 GTTTGAGTAC
*
41014 AAAAAATATTTTATTTTTTA
1 AAAAAATATTTTATTTTTAA
41034 AAAAAATATTTTATTTTTAA
1 AAAAAATATTTTATTTTTAA
41054 AAAAAATAT
1 AAAAAATAT
41063 GATTTACTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAAAATATTTTATTTTTAA
Found at i:42725 original size:17 final size:17
Alignment explanation
Indices: 42703--42737 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
42693 AGAACGCATC
42703 TTTCTTTCACCAAAATA
1 TTTCTTTCACCAAAATA
42720 TTTCTTTCACCAAAATA
1 TTTCTTTCACCAAAATA
42737 T
1 T
42738 GAAGCCTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTCTTTCACCAAAATA
Found at i:42957 original size:22 final size:22
Alignment explanation
Indices: 42932--42976 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
42922 GTTTTAATAA
*
42932 TTTTATTTAAATTT-TTTATATT
1 TTTTAATTAAATTTATTT-TATT
42954 TTTTAATTAAATTTATTTTATT
1 TTTTAATTAAATTTATTTTATT
42976 T
1 T
42977 GACTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTAATTAAATTTATTTTATT
Found at i:43868 original size:34 final size:34
Alignment explanation
Indices: 43798--43869 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
43788 TCTATATAAT
*
43798 ATATATAAAATACAGATTTTTTACATAAATGCTA
1 ATATATAAAATACAGATTTTTTACATAAATACTA
* *
43832 ATATATAGAATACA-ATTTTTTTACATAAATATTA
1 ATATATAAAATACAGA-TTTTTTACATAAATACTA
43866 ATAT
1 ATAT
43870 TTATTATGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.03
34 33 0.97
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (34 bp):
ATATATAAAATACAGATTTTTTACATAAATACTA
Found at i:44484 original size:20 final size:23
Alignment explanation
Indices: 44456--44503 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
44446 AATATATACA
*
44456 AATTTT-TATAAATTAAAA-ATT
1 AATTTTATATATATTAAAATATT
44477 AATTTTATATATATTAAAATATT
1 AATTTTATATATATTAAAATATT
44500 AATT
1 AATT
44504 ATACATCGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 6 0.25
22 11 0.46
23 7 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AATTTTATATATATTAAAATATT
Found at i:44830 original size:30 final size:27
Alignment explanation
Indices: 44788--44844 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 27
44778 AATTGAAATT
44788 TTTTTATAATTAAAATTATTAAAATTTAA
1 TTTTTATAATTAAAATTA--AAAATTTAA
*
44817 TTTTTAGTTATTAAAATTAAAAATTTAA
1 TTTTTA-TAATTAAAATTAAAAATTTAA
44845 AACTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 9 0.35
29 6 0.23
30 11 0.42
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTTATAATTAAAATTAAAAATTTAA
Found at i:44843 original size:21 final size:21
Alignment explanation
Indices: 44803--44843 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
44793 ATAATTAAAA
* **
44803 TTATTAAAATTTAATTTTTAG
1 TTATTAAAATTAAAAATTTAG
44824 TTATTAAAATTAAAAATTTA
1 TTATTAAAATTAAAAATTTA
44844 AAACTTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TTATTAAAATTAAAAATTTAG
Found at i:45935 original size:37 final size:39
Alignment explanation
Indices: 45867--45947 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 39
45857 TTATTGTTAA
*
45867 ATTAAATTATTATTAAGTTATATTCTAATTCAAATGTAT
1 ATTAAATTATTATTAAGTTATATTCTAATTCAAATATAT
* *
45906 ATTAAA-TATT-TTAAAGTTAT-TTTTAATTCAATTATAT
1 ATTAAATTATTATT-AAGTTATATTCTAATTCAAATATAT
45943 ATTAA
1 ATTAA
45948 CTTTGAAATG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 21 0.55
38 11 0.29
39 6 0.16
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (39 bp):
ATTAAATTATTATTAAGTTATATTCTAATTCAAATATAT
Found at i:46642 original size:5 final size:5
Alignment explanation
Indices: 46628--46686 Score: 66
Period size: 5 Copynumber: 11.6 Consensus size: 5
46618 AAAGGGGCAG
* *
46628 AAAG- AAAGA AAAGA AAAGA AAAGA AAAGA AAGGAA AAAGA AATAGG AAAGA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG-A AAAGA AA-AGA AAAGA
*
46679 AAGGA AAA
1 AAAGA AAA
46687 CAAATAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
4 4 0.09
5 34 0.74
6 8 0.17
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:46652 original size:15 final size:15
Alignment explanation
Indices: 46628--46686 Score: 66
Period size: 16 Copynumber: 3.9 Consensus size: 15
46618 AAAGGGGCAG
46628 AAAG-AAAGAAAAGA
1 AAAGAAAAGAAAAGA
46642 AAAGAAAAGAAAAGA
1 AAAGAAAAGAAAAGA
* *
46657 AAGGAAAAAGAAATAGG
1 AAAG-AAAAGAAA-AGA
*
46674 AAAGAAAGGAAAA
1 AAAGAAAAGAAAA
46687 CAAATAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
14 4 0.11
15 14 0.37
16 15 0.39
17 5 0.13
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (15 bp):
AAAGAAAAGAAAAGA
Found at i:46697 original size:32 final size:31
Alignment explanation
Indices: 46626--46697 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 31
46616 AAAAAGGGGC
*
46626 AGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAA
1 AGAAA-AAAGAAAAGAAAAGAAAAGAAAACAA
* * *
46658 AGGAAAAAGAAATAGGAAAGAAAGGAAAACAA
1 AGAAAAAAGAAA-AGAAAAGAAAAGAAAACAA
*
46690 ATAAAAAA
1 AGAAAAAA
46698 ATTATGTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 7 0.21
32 26 0.79
ACGTcount: A:0.75, C:0.01, G:0.21, T:0.03
Consensus pattern (31 bp):
AGAAAAAAGAAAAGAAAAGAAAAGAAAACAA
Found at i:46810 original size:17 final size:17
Alignment explanation
Indices: 46788--46824 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
46778 TATTAACATG
46788 TTTATTTATATATTATA
1 TTTATTTATATATTATA
*
46805 TTTATTTTTATATTATA
1 TTTATTTATATATTATA
46822 TTT
1 TTT
46825 TAATTCATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTATATATTATA
Found at i:47297 original size:26 final size:24
Alignment explanation
Indices: 47268--47316 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
47258 TTATTTTTAA
*
47268 AATTTTAATATAATTTTTTAAAATAC
1 AATTTTAAT-TAA-TTTATAAAATAC
47294 AATTTTAATTAATTTATAAAATA
1 AATTTTAATTAATTTATAAAATA
47317 ATCTCGGACG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
25 3 0.14
26 9 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
AATTTTAATTAATTTATAAAATAC
Found at i:47473 original size:17 final size:17
Alignment explanation
Indices: 47422--47510 Score: 69
Period size: 17 Copynumber: 5.2 Consensus size: 17
47412 TTGATAGTTC
* *
47422 ATATATTATATTATATA
1 ATATTTTATATTTTATA
* *
47439 ATA-ATTAT-TTTTAAA
1 ATATTTTATATTTTATA
47454 ATATTTTAT-TTTTATTA
1 ATATTTTATATTTTA-TA
47471 ATAATTTATATATTTTAT-
1 AT-ATTT-TATATTTTATA
*
47489 ATATTTTTATATTTTATT
1 ATA-TTTTATATTTTATA
47507 ATAT
1 ATAT
47511 ATTAATATAT
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
15 8 0.13
16 14 0.23
17 18 0.30
18 12 0.20
19 4 0.07
20 5 0.08
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATTTTATATTTTATA
Found at i:47485 original size:37 final size:39
Alignment explanation
Indices: 47423--47526 Score: 112
Period size: 36 Copynumber: 2.8 Consensus size: 39
47413 TGATAGTTCA
* *
47423 TATATTATATTATATAATAAT-TATTTTTAAAATA-TTT
1 TATATTTTATTATATATTAATATATTTTTAAAATATTTT
* *
47460 TAT-TTTTATTA-ATAATTTATATA-TTTT-ATATATTTT
1 TATATTTTATTATAT-ATTAATATATTTTTAAAATATTTT
47496 TATATTTTATTATATATTAATATATTATTTA
1 TATATTTTATTATATATTAATATATT-TTTA
47527 CCGCGTCTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
35 6 0.11
36 21 0.39
37 21 0.39
38 3 0.06
39 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (39 bp):
TATATTTTATTATATATTAATATATTTTTAAAATATTTT
Found at i:47488 original size:20 final size:19
Alignment explanation
Indices: 47463--47521 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
47453 AATATTTTAT
47463 TTTTATTAATAATTTATATA
1 TTTTATT-ATAATTTATATA
*
47483 TTTTA-TAT-ATTTTTATA
1 TTTTATTATAATTTATATA
*
47500 TTTTATTATATATTAATATA
1 TTTTATTATA-ATTTATATA
47520 TT
1 TT
47522 ATTTACCGCG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.39
18 5 0.15
19 1 0.03
20 14 0.42
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTATTATAATTTATATA
Found at i:47519 original size:10 final size:10
Alignment explanation
Indices: 47476--47524 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
47466 TATTAATAAT
47476 TTATATATT-
1 TTATATATTA
*
47485 TTATATATTT
1 TTATATATTA
*
47495 TTATATTTTA
1 TTATATATTA
47505 TTATATATTA
1 TTATATATTA
47515 --ATATATTA
1 TTATATATTA
47523 TT
1 TT
47525 TACCGCGTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
8 8 0.24
9 9 0.26
10 17 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATATATTA
Found at i:47747 original size:13 final size:14
Alignment explanation
Indices: 47731--47760 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
47721 AAAAGGAAAA
47731 AAAAATGAAAAT-G
1 AAAAATGAAAATCG
47744 AAAAATGAAAATCG
1 AAAAATGAAAATCG
47758 AAA
1 AAA
47761 CCTAAAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAAATGAAAATCG
Found at i:49781 original size:18 final size:18
Alignment explanation
Indices: 49744--49777 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
49734 ATAGATATAT
*
49744 TTTTTATATATTTAAATA
1 TTTTTATATAATTAAATA
49762 TTTTTAT-TAATTAAAT
1 TTTTTATATAATTAAAT
49778 TATTAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTATATAATTAAATA
Found at i:49915 original size:18 final size:19
Alignment explanation
Indices: 49872--49916 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
49862 TATTTTTTTA
49872 AATATTTTTAATAATTAATT
1 AATATTTTTAAT-ATTAATT
*
49892 ATATATTTTTAAT-TTATTT
1 A-ATATTTTTAATATTAATT
49911 AATATT
1 AATATT
49917 CAATTTGCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 6 0.26
20 1 0.04
21 11 0.48
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATATTTTTAATATTAATT
Found at i:55000 original size:16 final size:16
Alignment explanation
Indices: 54961--55003 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
54951 TGATGACAAT
* *
54961 AATATAATCAACCTCA
1 AATATAGTCAACATCA
54977 AATATAGTCAACATCA
1 AATATAGTCAACATCA
*
54993 AATGTAGTCAA
1 AATATAGTCAA
55004 TAATAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.19, G:0.07, T:0.26
Consensus pattern (16 bp):
AATATAGTCAACATCA
Found at i:60280 original size:18 final size:18
Alignment explanation
Indices: 60257--60292 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60247 ATGAAATCCA
60257 AAGATATAATAAGAAGTT
1 AAGATATAATAAGAAGTT
60275 AAGATATAATAAGAAGTT
1 AAGATATAATAAGAAGTT
60293 TAAATTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.28
Consensus pattern (18 bp):
AAGATATAATAAGAAGTT
Found at i:66034 original size:25 final size:27
Alignment explanation
Indices: 66001--66055 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
65991 TATTTTATGT
* *
66001 ATAATATTTTGATATA-TA-ATTTAAA
1 ATAAAATTTTAATATATTATATTTAAA
66026 ATAAAATTTTAATATATTATATTTAAA
1 ATAAAATTTTAATATATTATATTTAAA
66053 ATA
1 ATA
66056 TTTAAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 14 0.54
26 2 0.08
27 10 0.38
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
ATAAAATTTTAATATATTATATTTAAA
Found at i:66060 original size:36 final size:35
Alignment explanation
Indices: 66019--66107 Score: 92
Period size: 36 Copynumber: 2.4 Consensus size: 35
66009 TTGATATATA
* *
66019 ATTTAAAATAA-AATTTTAATATATTATAT-TTAAAAT
1 ATTTAAAATAATAA-TGTAATA-ATTAAATGTT-AAAT
66055 ATTTAAAAGTAATAATGTAATAATTAAATGTTAAAT
1 ATTTAAAA-TAATAATGTAATAATTAAATGTTAAAT
66091 ATTTAATAATATATAAT
1 ATTTAA-AATA-ATAAT
66108 ATAAAATATT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
36 26 0.57
37 18 0.39
38 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (35 bp):
ATTTAAAATAATAATGTAATAATTAAATGTTAAAT
Found at i:66278 original size:18 final size:18
Alignment explanation
Indices: 66255--66300 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 18
66245 CAGTAAAAAT
66255 TTTAAATAATATATAATA
1 TTTAAATAATATATAATA
*
66273 TTTAAAT-AT-T-TTATA
1 TTTAAATAATATATAATA
66288 TTT-AATAATATAT
1 TTTAAATAATATAT
66301 TAAAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
14 3 0.12
15 9 0.38
16 2 0.08
17 3 0.12
18 7 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTAAATAATATATAATA
Found at i:67490 original size:19 final size:17
Alignment explanation
Indices: 67466--67525 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 17
67456 ACAGTAACTA
67466 TATCGATACTTAAGTGTTG
1 TATCGATAC-TAAGTG-TG
67485 TATCGATAC-AA---TG
1 TATCGATACTAAGTGTG
67498 TATCGATACATAAGTGCTG
1 TATCGATAC-TAAGTG-TG
67517 TATCGATAC
1 TATCGATAC
67526 AATGTATCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.31
15 2 0.06
17 2 0.06
19 20 0.57
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (17 bp):
TATCGATACTAAGTGTG
Found at i:67501 original size:13 final size:13
Alignment explanation
Indices: 67483--67507 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67473 ACTTAAGTGT
67483 TGTATCGATACAA
1 TGTATCGATACAA
67496 TGTATCGATACA
1 TGTATCGATACA
67508 TAAGTGCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:67512 original size:32 final size:32
Alignment explanation
Indices: 67466--67533 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
67456 ACAGTAACTA
* *
67466 TATCGATACTTAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGCTGTATCGATACAATG
67498 TATCGATACATAAGTGCTGTATCGATACAATG
1 TATCGATACATAAGTGCTGTATCGATACAATG
67530 TATC
1 TATC
67534 CCTATAAAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (32 bp):
TATCGATACATAAGTGCTGTATCGATACAATG
Found at i:70287 original size:21 final size:19
Alignment explanation
Indices: 70240--70288 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 19
70230 CATTCAAAGG
70240 GAATC-ATATCGAAATAAT
1 GAATCAATATCGAAATAAT
70258 G-AT-AA-ATCGAAATCAAT
1 GAATCAATATCGAAAT-AAT
70275 GTAATCAATATCGA
1 G-AATCAATATCGA
70289 GTCAAAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
16 8 0.32
17 7 0.28
18 1 0.04
19 2 0.08
20 2 0.08
21 5 0.20
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (19 bp):
GAATCAATATCGAAATAAT
Found at i:75395 original size:22 final size:23
Alignment explanation
Indices: 75350--75395 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
75340 ATTAATTATA
* * *
75350 ATTTTAAAATATATTGTAACATT
1 ATTTAAAAATAAATTGTAAAATT
75373 ATTTAAAAATAAATT-TAAAATT
1 ATTTAAAAATAAATTGTAAAATT
75395 A
1 A
75396 GATGTGCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTTAAAAATAAATTGTAAAATT
Found at i:75525 original size:20 final size:21
Alignment explanation
Indices: 75475--75519 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
75465 TAAAATTAAT
75475 TATTATAAT-GATAAGATTTGA
1 TATTATAATAGA-AAGATTTGA
75496 TATTATAATAGAAAGATTT-A
1 TATTATAATAGAAAGATTTGA
75516 TATT
1 TATT
75520 TAAATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (21 bp):
TATTATAATAGAAAGATTTGA
Found at i:75691 original size:21 final size:21
Alignment explanation
Indices: 75667--75719 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
75657 ATTTTGATAA
75667 ATAAAATAATTATA-TAAATAT
1 ATAAAATAATTATATTAAAT-T
* *
75688 ATAAATTTATTATATTAAATT
1 ATAAAATAATTATATTAAATT
*
75709 ATTAAATAATT
1 ATAAAATAATT
75720 TAAAATTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAAAATAATTATATTAAATT
Found at i:75736 original size:15 final size:16
Alignment explanation
Indices: 75716--75747 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
75706 ATTATTAAAT
75716 AATTTAA-AATTTTTA
1 AATTTAATAATTTTTA
75731 AATTTAATAATTTTTA
1 AATTTAATAATTTTTA
75747 A
1 A
75748 TTATTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTAATAATTTTTA
Found at i:75749 original size:15 final size:14
Alignment explanation
Indices: 75715--75749 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
75705 AATTATTAAA
75715 TAATTTAAAATTTT
1 TAATTTAAAATTTT
75729 TAAATTTAATAATTTT
1 T-AATTTAA-AATTTT
75745 TAATT
1 TAATT
75750 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 11 0.58
16 7 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAATTTAAAATTTT
Found at i:75822 original size:35 final size:35
Alignment explanation
Indices: 75737--75837 Score: 104
Period size: 35 Copynumber: 2.9 Consensus size: 35
75727 TTTAAATTTA
*
75737 ATAATTTTTAATTATTATTTAA-ATTAAATATAAAT
1 ATAAATTTTAATTATTATTTAATA-TAAATATAAAT
* *
75772 -T-TATTTATATTTTATTATTTAATATAAATATAAAT
1 ATAAATTT-TA-ATTATTATTTAATATAAATATAAAT
75807 ATAAATTTTAATTATT-TATT-ATATAAATATA
1 ATAAATTTTAATTATTAT-TTAATATAAATATA
75838 TTTTAATTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
33 3 0.05
34 15 0.27
35 29 0.53
36 4 0.07
37 4 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (35 bp):
ATAAATTTTAATTATTATTTAATATAAATATAAAT
Found at i:75868 original size:13 final size:13
Alignment explanation
Indices: 75815--75868 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 13
75805 ATATAAATTT
75815 TAATTATTTATTATA
1 TAATTATTT-TTA-A
*
75830 TAAATATATTTTAA
1 TAATTAT-TTTTAA
*
75844 TTTATTATTTTTAA
1 -TAATTATTTTTAA
75858 TAATTATTTTT
1 TAATTATTTTT
75869 CATTCTCTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 10 0.30
14 7 0.21
15 14 0.42
16 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATTATTTTTAA
Found at i:75922 original size:21 final size:21
Alignment explanation
Indices: 75890--75947 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
75880 TAAATTTAAA
75890 TATAAT-TTTAATTTTAATAT
1 TATAATATTTAATTTTAATAT
*
75910 TATAATATTTAATTTTATTAT
1 TATAATATTTAATTTTAATAT
* *
75931 TAAAATAATTAATTTTA
1 TATAATATTTAATTTTA
75948 TTGTGATGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 6 0.18
21 28 0.82
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TATAATATTTAATTTTAATAT
Found at i:75938 original size:78 final size:84
Alignment explanation
Indices: 75796--75946 Score: 190
Period size: 78 Copynumber: 1.9 Consensus size: 84
75786 TTATTTAATA
* **
75796 TAAATATAAATATAAATTTTAATTATTTATTATATAAATATATTTTAATTTATTATTTTTAATAA
1 TAAATATAAATATAAATTTTAATTATTTAATATATAAATATATTTTAATTTATTATTTAAAATAA
*
75861 TTATTTTTCATTCTCTGAT
66 TTAATTTTCATTCTCTGAT
* *
75880 TAAATTTAAATAT-AATTTTAA-T-TTTAATAT-TATA-ATA-TTTAATTTTATTA-TTAAAATA
1 TAAATATAAATATAAATTTTAATTATTTAATATATAAATATATTTTAA-TTTATTATTTAAAATA
75938 ATTAATTTT
65 ATTAATTTT
75947 ATTGTGATGG
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
78 19 0.32
79 10 0.17
80 3 0.05
81 7 0.12
82 1 0.02
83 8 0.13
84 12 0.20
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.56
Consensus pattern (84 bp):
TAAATATAAATATAAATTTTAATTATTTAATATATAAATATATTTTAATTTATTATTTAAAATAA
TTAATTTTCATTCTCTGAT
Found at i:76761 original size:3 final size:3
Alignment explanation
Indices: 76748--76791 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
76738 TTCCCTGAAC
*
76748 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
76792 GACGAAATGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:97347 original size:2 final size:2
Alignment explanation
Indices: 97340--97374 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
97330 AACAGCCTAC
97340 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97375 CATGCTAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:100291 original size:83 final size:83
Alignment explanation
Indices: 100188--100374 Score: 275
Period size: 83 Copynumber: 2.3 Consensus size: 83
100178 CTTATTCGAT
* * *
100188 TAGGATCAATACACCCTACCTAGTTTAGAGACCACTGGCGTGAAATCAGTGCCCAAAGACCTTCA
1 TAGGATCAATGCACCCTACCTACTTTAGAGACCACTGGCATGAAATCAGTGCCCAAAGACCTTCA
100253 TGCCCAAATTATCTAATG
66 TGCCCAAATTATCTAATG
* * * *
100271 TAGGATCAGTGCACTCTACCTACTTTAGATACCATTGGCATGAAATCAGTGCCCAAAGACCTTCA
1 TAGGATCAATGCACCCTACCTACTTTAGAGACCACTGGCATGAAATCAGTGCCCAAAGACCTTCA
* *
100336 TGCTCAAATTATCTGATG
66 TGCCCAAATTATCTAATG
* *
100354 CAGGATCAATGCACGCTACCT
1 TAGGATCAATGCACCCTACCT
100375 CTTACTTCAG
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 92 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (83 bp):
TAGGATCAATGCACCCTACCTACTTTAGAGACCACTGGCATGAAATCAGTGCCCAAAGACCTTCA
TGCCCAAATTATCTAATG
Found at i:106438 original size:32 final size:34
Alignment explanation
Indices: 106375--106447 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 34
106365 AAGTAAAATG
* *
106375 TCAAATATAAAAAAATAAACTAAAAATAAAAG-A
1 TCAAATAGAAAAAAATAAACTAAAAACAAAAGTA
* **
106408 T-AAATAGAAAAAGATAAACTAAAGGCAAAAGTA
1 TCAAATAGAAAAAAATAAACTAAAAACAAAAGTA
106441 TCAAATA
1 TCAAATA
106448 AATTGTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
32 25 0.76
33 3 0.09
34 5 0.15
ACGTcount: A:0.67, C:0.07, G:0.08, T:0.18
Consensus pattern (34 bp):
TCAAATAGAAAAAAATAAACTAAAAACAAAAGTA
Found at i:107030 original size:40 final size:40
Alignment explanation
Indices: 106974--107049 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
106964 GATATTCCAA
* *
106974 ATTAAAACATAGAGATACAATTAATTGGTCTTCTTTTTGT
1 ATTAAAACATAAAGATACAATTAATTGATCTTCTTTTTGT
* *
107014 ATTAAAAGATAAAGATACAGTTAATTGATCTTCTTT
1 ATTAAAACATAAAGATACAATTAATTGATCTTCTTT
107050 CTGTTCATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (40 bp):
ATTAAAACATAAAGATACAATTAATTGATCTTCTTTTTGT
Found at i:107869 original size:23 final size:23
Alignment explanation
Indices: 107842--107906 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 23
107832 AGTTCATGTA
107842 TTTATATCGTGTTTATATTATTT
1 TTTATATCGTGTTTATATTATTT
* *
107865 TTTATGTCGTGTTTTTAGTTATTT
1 TTTATATCGTGTTTATA-TTATTT
* * *
107889 TTCATATTGTATTTATAT
1 TTTATATCGTGTTTATAT
107907 CGTATCTCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 16 0.47
24 18 0.53
ACGTcount: A:0.20, C:0.05, G:0.11, T:0.65
Consensus pattern (23 bp):
TTTATATCGTGTTTATATTATTT
Found at i:108565 original size:19 final size:19
Alignment explanation
Indices: 108539--108581 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
108529 TATTATTTAG
108539 ATTTTGACA-GATTAATG-T
1 ATTTTGACATG-TTAATGTT
108557 ATTTATGACATGTTAATGTT
1 ATTT-TGACATGTTAATGTT
108577 ATTTT
1 ATTTT
108582 TGCATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.18
19 12 0.55
20 6 0.27
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (19 bp):
ATTTTGACATGTTAATGTT
Found at i:112865 original size:73 final size:73
Alignment explanation
Indices: 112751--112898 Score: 181
Period size: 73 Copynumber: 2.0 Consensus size: 73
112741 ACCTTTATTT
* * * *
112751 TTTCCTTATCTGTTAAGCGCACGTCACCTTATTCAGCATTCTTAAAACTTTTATATTGCCTTTTT
1 TTTCCTTATCTGTTAAGCACACGTCACCTTATTCAGCATTCTTAAAACTTTTATACTACCTTTGT
*
112816 TTTTTTTC
66 TTTTCTTC
* ** * * *
112824 TTTCC-TATTTGTTAAAGCACACGTGGCCTTCTTCAGTATTCTTAAAAGTTTTATACTACCTTTG
1 TTTCCTTATCTGTT-AAGCACACGTCACCTTATTCAGCATTCTTAAAACTTTTATACTACCTTTG
112888 TTTTTCTTC
65 TTTTTCTTC
112897 TT
1 TT
112899 ATTTGTTGAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
72 7 0.11
73 56 0.89
ACGTcount: A:0.20, C:0.21, G:0.09, T:0.50
Consensus pattern (73 bp):
TTTCCTTATCTGTTAAGCACACGTCACCTTATTCAGCATTCTTAAAACTTTTATACTACCTTTGT
TTTTCTTC
Found at i:113282 original size:20 final size:22
Alignment explanation
Indices: 113257--113298 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
113247 CAACCAAATC
*
113257 TTTATC-ATATTTTTA-ATATA
1 TTTATCTATACTTTTAGATATA
113277 TTTATCTATACTTTTAGATATA
1 TTTATCTATACTTTTAGATATA
113299 ATTTTAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 8 0.42
22 5 0.26
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTATCTATACTTTTAGATATA
Found at i:114501 original size:18 final size:19
Alignment explanation
Indices: 114477--114519 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
114467 GAAAGGAGAA
114477 AAAAAAAGAAAAAAGAGAG-
1 AAAAAAA-AAAAAAGAGAGC
114496 AAAAAAAAAAAAAGAGAGC
1 AAAAAAAAAAAAAGAGAGC
114515 AAAAA
1 AAAAA
114520 TTTACATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAAGAGAGC
Found at i:114504 original size:16 final size:17
Alignment explanation
Indices: 114479--114512 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
114469 AAGGAGAAAA
*
114479 AAAAAGAAAAAAGAGAG
1 AAAAAGAAAAAAAAGAG
114496 AAAAA-AAAAAAAAGAG
1 AAAAAGAAAAAAAAGAG
114512 A
1 A
114513 GCAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAGAG
Found at i:114518 original size:16 final size:17
Alignment explanation
Indices: 114478--114519 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 17
114468 AAAGGAGAAA
114478 AAAAAAGAAAAAAGAGAG
1 AAAAAA-AAAAAAGAGAG
114496 AAAAAAAAAAAAAGAGAG
1 -AAAAAAAAAAAAGAGAG
114514 CAAAAA
1 -AAAAA
114520 TTTACATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAGAGAG
Found at i:114754 original size:33 final size:31
Alignment explanation
Indices: 114684--114755 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
114674 GTTATTAAAA
*
114684 ATTTATATAAATTTTTATATGTTAATTATTC
1 ATTTATATAAATTTTGATATGTTAATTATTC
* * **
114715 GTTTATATATATTTTGATATGTTTGTATATTC
1 ATTTATATAAATTTTGATATGTTAAT-TATTC
114747 ATGTTATAT
1 AT-TTATAT
114756 TTATATTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 21 0.64
32 6 0.18
33 6 0.18
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (31 bp):
ATTTATATAAATTTTGATATGTTAATTATTC
Found at i:115419 original size:27 final size:25
Alignment explanation
Indices: 115381--115472 Score: 82
Period size: 27 Copynumber: 3.6 Consensus size: 25
115371 TATTTATGTA
*
115381 TTCATGTCATATTTATATTATTTTTG
1 TTCATGTTATATTT-TATTATTTTTG
115407 TGTCATGTTATATTTTA--ATTTTT-
1 T-TCATGTTATATTTTATTATTTTTG
*
115430 TTCATATTATATTTGTATTATGTTTTG
1 TTCATGTTATATTT-TATTAT-TTTTG
* *
115457 ATTTATCTTATATTTT
1 -TTCATGTTATATTTT
115473 CATAATTTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
22 12 0.22
23 3 0.05
24 6 0.11
25 2 0.04
26 7 0.13
27 13 0.24
28 12 0.22
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (25 bp):
TTCATGTTATATTTTATTATTTTTG
Found at i:115439 original size:22 final size:23
Alignment explanation
Indices: 115385--115448 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
115375 TATGTATTCA
*
115385 TGTCATATT-TATATTATTTTTG
1 TGTCATATTATATTTTATTTTTG
*
115407 TGTCATGTTATATTTTAATTTTT-
1 TGTCATATTATATTTT-ATTTTTG
115430 T-TCATATTATATTTGTATT
1 TGTCATATTATATTT-TATT
115449 ATGTTTTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 23 0.64
23 7 0.19
24 6 0.17
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (23 bp):
TGTCATATTATATTTTATTTTTG
Found at i:115584 original size:20 final size:22
Alignment explanation
Indices: 115559--115599 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
115549 TAATAATTAT
115559 TTTATATGA-T-TTAATTTAAA
1 TTTATATGATTATTAATTTAAA
115579 TTTATATGATTATTAATTTAA
1 TTTATATGATTATTAATTTAA
115600 TTAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 1 0.05
22 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTATATGATTATTAATTTAAA
Found at i:115607 original size:22 final size:20
Alignment explanation
Indices: 115562--115603 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
115552 TAATTATTTT
*
115562 ATATGATTTAATTTAAATTT
1 ATATGATTTAATTTAAATTA
115582 ATATGATTATTAATTT-AATTA
1 ATATGA-T-TTAATTTAAATTA
115603 A
1 A
115604 ATATTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.32
21 6 0.32
22 7 0.37
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (20 bp):
ATATGATTTAATTTAAATTA
Found at i:115753 original size:16 final size:16
Alignment explanation
Indices: 115732--115765 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
115722 GTGGCAAAGG
*
115732 TATTTTTTTAGATTTT
1 TATTTTTGTAGATTTT
*
115748 TATTTTTGTATATTTT
1 TATTTTTGTAGATTTT
115764 TA
1 TA
115766 ATGTTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
TATTTTTGTAGATTTT
Found at i:117643 original size:20 final size:20
Alignment explanation
Indices: 117599--117645 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
117589 TTTTACCCAG
*
117599 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTCTTCA
*
117619 TTGTATCGATACATT-TCTCA
1 ATGTATCGATACATTCT-TCA
117639 ATGTATC
1 ATGTATC
117646 AATGCATTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.45
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:120654 original size:22 final size:22
Alignment explanation
Indices: 120626--120667 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
120616 GCCATTCATG
120626 GTAAAATATACATATACTTCTA
1 GTAAAATATACATATACTTCTA
* *
120648 GTAAAATGTACATATGCTTC
1 GTAAAATATACATATACTTC
120668 ATGTACATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (22 bp):
GTAAAATATACATATACTTCTA
Found at i:121422 original size:16 final size:17
Alignment explanation
Indices: 121401--121470 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 17
121391 CCGAGATTTC
121401 AAAAAAAAT-ATTAAAT
1 AAAAAAAATAATTAAAT
*
121417 -AAAAAAATAAATAAATT
1 AAAAAAAATAATTAAA-T
* **
121434 AAAATAAA-AATTTTAT
1 AAAAAAAATAATTAAAT
*
121450 -AAAAAAATAATGAAAT
1 AAAAAAAATAATTAAAT
121466 AAAAA
1 AAAAA
121471 GAAGAAATGA
Statistics
Matches: 40, Mismatches: 9, Indels: 9
0.69 0.16 0.16
Matches are distributed among these distances:
15 14 0.35
16 11 0.28
17 9 0.22
18 6 0.15
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.24
Consensus pattern (17 bp):
AAAAAAAATAATTAAAT
Found at i:121603 original size:38 final size:38
Alignment explanation
Indices: 121552--121679 Score: 179
Period size: 38 Copynumber: 3.3 Consensus size: 38
121542 TTTTTTTTTC
121552 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
1 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
121590 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
1 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
* *
121628 TTCATGCATGCATAATTTTCATTTCATGCTTTTCACGTAACAT
1 AT--TGCATGC---ATTTTCATTTCATGTTTTTCACGTAACAT
121671 -TT-CATGCAT
1 ATTGCATGCAT
121680 GCATAATTTT
Statistics
Matches: 83, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
36 2 0.02
38 39 0.47
39 5 0.06
40 8 0.10
42 1 0.01
43 28 0.34
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (38 bp):
ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
Found at i:121653 original size:22 final size:22
Alignment explanation
Indices: 121625--121701 Score: 81
Period size: 22 Copynumber: 3.5 Consensus size: 22
121615 TTTCACGTAA
121625 CATTTCATGCATGCATAATTTT
1 CATTTCATGCATGCATAATTTT
* *
121647 CATTTCATGCTTTTCACGTAA----
1 CATTTCATGC-ATGCA--TAATTTT
121668 CATTTCATGCATGCATAATTTT
1 CATTTCATGCATGCATAATTTT
121690 CATTTCATGCAT
1 CATTTCATGCAT
121702 TTCAAAAACA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
18 3 0.07
20 3 0.07
21 10 0.23
22 22 0.50
23 3 0.07
25 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (22 bp):
CATTTCATGCATGCATAATTTT
Found at i:121673 original size:21 final size:21
Alignment explanation
Indices: 121604--121677 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
121594 CATGCATTTT
*
121604 CATTTCATGTTTTTCACGTAA
1 CATTTCATGCTTTTCACGTAA
* *
121625 CATTTCATGC-ATGCA--TAA
1 CATTTCATGCTTTTCACGTAA
121643 TTTTCATTTCATGCTTTTCACGTAA
1 ----CATTTCATGCTTTTCACGTAA
121668 CATTTCATGC
1 CATTTCATGC
121678 ATGCATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
18 3 0.07
20 3 0.07
21 19 0.46
22 10 0.24
23 3 0.07
25 3 0.07
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.45
Consensus pattern (21 bp):
CATTTCATGCTTTTCACGTAA
Found at i:121699 original size:43 final size:43
Alignment explanation
Indices: 121561--121705 Score: 219
Period size: 43 Copynumber: 3.5 Consensus size: 43
121551 CATTGCATGC
* *
121561 ATTTTCATTTCATGTTTTTCACGTAACATAT--TGCATGC---
1 ATTTTCATTTCATGCTTTTCACGTAACATTTCATGCATGCATA
*
121599 ATTTTCATTTCATGTTTTTCACGTAACATTTCATGCATGCATA
1 ATTTTCATTTCATGCTTTTCACGTAACATTTCATGCATGCATA
121642 ATTTTCATTTCATGCTTTTCACGTAACATTTCATGCATGCATA
1 ATTTTCATTTCATGCTTTTCACGTAACATTTCATGCATGCATA
*
121685 ATTTTCATTTCATGCATTTCA
1 ATTTTCATTTCATGCTTTTCA
121706 AAAACATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
38 30 0.30
40 7 0.07
43 62 0.63
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (43 bp):
ATTTTCATTTCATGCTTTTCACGTAACATTTCATGCATGCATA
Found at i:121736 original size:5 final size:5
Alignment explanation
Indices: 121728--121808 Score: 108
Period size: 5 Copynumber: 16.2 Consensus size: 5
121718 TGCATTGCAC
* * *
121728 TTCAT TTCAT TTCAT TGCAT TTCAT TGCAT TGCAT TTCAT TTCAT TTCAT
1 TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT
* * *
121778 TTCAT TTCAT TGCAT TGCAT TTCAT TACAT T
1 TTCAT TTCAT TTCAT TTCAT TTCAT TTCAT T
121809 GCTTTCATGC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 69 1.00
ACGTcount: A:0.21, C:0.20, G:0.06, T:0.53
Consensus pattern (5 bp):
TTCAT
Found at i:121748 original size:15 final size:15
Alignment explanation
Indices: 121730--121820 Score: 123
Period size: 15 Copynumber: 6.2 Consensus size: 15
121720 CATTGCACTT
121730 CATTTCATTTCATTG
1 CATTTCATTTCATTG
*
121745 CATTTCATTGCATTG
1 CATTTCATTTCATTG
*
121760 CATTTCATTTCATTT
1 CATTTCATTTCATTG
121775 CATTTCATTTCATTG
1 CATTTCATTTCATTG
* *
121790 CATTGCATTTCATTA
1 CATTTCATTTCATTG
*
121805 CATTGC-TTTCA-TG
1 CATTTCATTTCATTG
121818 CAT
1 CAT
121821 GAAATGGCCG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
13 4 0.06
14 5 0.07
15 60 0.87
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.51
Consensus pattern (15 bp):
CATTTCATTTCATTG
Found at i:130075 original size:1 final size:1
Alignment explanation
Indices: 130069--130157 Score: 70
Period size: 1 Copynumber: 89.0 Consensus size: 1
130059 AAATCTTCAC
* * ** * * * **
130069 TTTTTTTTTTGTTTTTTTTTTTCTTTTTCCTTTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
130134 TTTTTGTTTTGTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTT
130158 CCAATTGCCA
Statistics
Matches: 68, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:130112 original size:33 final size:33
Alignment explanation
Indices: 130069--130156 Score: 153
Period size: 32 Copynumber: 2.7 Consensus size: 33
130059 AAATCTTCAC
130069 TTTTTT-TTTTGTTTTTTTTTTTCTTTTTCCTT
1 TTTTTTGTTTTGTTTTTTTTTTTCTTTTTCCTT
130101 TTTTTTGTTTTG-TTTTTTTTTTCTTTTTCCTT
1 TTTTTTGTTTTGTTTTTTTTTTTCTTTTTCCTT
130133 TTTTTTGTTTTGTTTTTTTCTTTT
1 TTTTTTGTTTTGTTTTTTT-TTTT
130157 TCCAATTGCC
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
32 38 0.72
33 11 0.21
34 4 0.08
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (33 bp):
TTTTTTGTTTTGTTTTTTTTTTTCTTTTTCCTT
Found at i:142446 original size:42 final size:42
Alignment explanation
Indices: 142397--143147 Score: 911
Period size: 42 Copynumber: 17.8 Consensus size: 42
142387 TTTGTTTTCA
*
142397 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCCTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* *
142439 CTTAGTCTACCTGTTGGCTTTGACCCTGGAGACTTTTCTTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCC
* * *
142482 CTAAGTCTGCCTATCGGCTTTGGCCCTGGAGACTTTTCTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142524 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* ** * * *
142566 CTTCAGTCTGCCTGTCAGCTTTGATTCTGGAGAC--TGCCTCA
1 CTT-AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142607 TTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTT-C
1 CTT--AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142650 CTTAGTCTGCCTGTCGGCCTTGACCCTGGAGACTTTTCTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* * * **
142692 CTTAGTCTGCTTGTCGGCTTTGTCCCTGAAGACTTTTCAACC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* * *
142734 CTCAATCTACCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCC
* * * * *
142777 CTAAGTCTGCCTATCGGCTTCGTCCCTAGAGAC-TTTCTTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCC
** *
142819 CCCAGTCTACCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCC
* * *
142862 CTAAGTCTGCCTGTCGGCTTTGGCCCTAGAGACTTTTCTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142904 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* ** * * *
142946 CTTCAGTCTGCCTGTCAGCTTTGATTCTGGAGAC--TGCCTCA
1 CTT-AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142987 TTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
1 CTT--AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* *
143031 CTTAGTCTGCCTGTCGGCCTTGACCCTGGAGACTTTTCATCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* *
143073 CTTAGTCTGCCTGTCGGTTTTGACCTTGGAGACTTTTCTTTCC
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCC
* * * *
143116 CTAAGTCTGCCCGTTGGCTTTGACCCGGGAGA
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGA
143148 GTATTTTTTT
Statistics
Matches: 604, Mismatches: 92, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
41 48 0.08
42 356 0.59
43 191 0.32
44 9 0.01
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.36
Consensus pattern (42 bp):
CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
Found at i:142543 original size:85 final size:84
Alignment explanation
Indices: 142400--143147 Score: 882
Period size: 85 Copynumber: 8.8 Consensus size: 84
142390 GTTTTCACTT
* * *
142400 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCCTCCCTTAGTCTACCTGTTGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCC
142465 TGGAGACTTTTCTTTCCCTA
66 TGGAGACTTTTC-TTCCCTA
* *
142485 AGTCTGCCTATCGGCTTTGGCCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCC
* *
142550 TGGAGACTTTCCTTCCCTTC
66 TGGAGACTTTTCTTCCC-TA
* ** * * **
142570 AGTCTGCCTGTCAGCTTTGATTCTGGAGAC--TGCCTCATTTAAAGTCTGCCTGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTT--AGTCTGCCTGTCGGCTTTGAC
*
142633 CCTGGAGACTTTTCTT-CCTT
64 CCTGGAGACTTTTCTTCCCTA
* * *
142653 AGTCTGCCTGTCGGCCTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCTTGTCGGCTTTGTCCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCC
* **
142718 TGAAGACTTTTCAACCCTCA
66 TGGAGACTTTTCTTCCCT-A
* * * * *
142738 A-TCTACCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCCCTAAGTCTGCCTATCGGCTTCGTCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCCCTTAGTCTGCCTGTCGGCTTTGACC
* **
142802 CTAGAGAC-TTTCTTTCCCCC
65 CTGGAGACTTTTC-TTCCCTA
* * *
142822 AGTCTACCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCCCTAAGTCTGCCTGTCGGCTTTGGCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
142887 CTAGAGACTTTTCTTCCCTT
65 CTGGAGACTTTTCTTCCCTA
* * **
142907 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTCAGTCTGCCTGTCAGCTTTGATT
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTT-AGTCTGCCTGTCGGCTTTGACC
**
142972 CTGGAGACTGCCTCATT---TAA
65 CTGGAGACT-TTTC-TTCCCT-A
*
142992 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCCTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCC
* *
143057 TGGAGACTTTTCATCCCTT
66 TGGAGACTTTTCTTCCCTA
* * * * *
143076 AGTCTGCCTGTCGGTTTTGACCTTGGAGACTTTTCTTTCCCTAAGTCTGCCCGTTGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCCCTTAGTCTGCCTGTCGGCTTTGACC
*
143141 CGGGAGA
65 CTGGAGA
143148 GTATTTTTTT
Statistics
Matches: 568, Mismatches: 76, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
82 1 0.00
83 67 0.12
84 113 0.20
85 379 0.67
86 6 0.01
87 2 0.00
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.36
Consensus pattern (84 bp):
AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCC
TGGAGACTTTTCTTCCCTA
Found at i:142626 original size:127 final size:125
Alignment explanation
Indices: 142397--143147 Score: 888
Period size: 127 Copynumber: 5.9 Consensus size: 125
142387 TTTGTTTTCA
* *
142397 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCC-TCCCTTAGTCTACCTGTTGGCTTTG
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGAC-TTTCCTTCCCTTAGTCTGCCTGTCGGCTTTG
* * * *
142461 ACCCTGGAGACTTTTC-TTTCCCTAAGTCTGCCTATCGGCTTTGGCCCTGGAGACTTTTCTTCC
65 ATCCTGGAGACTTTTCATTT---AAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142524 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTCAGTCTGCCTGTCAGCTTTG
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTT-AGTCTGCCTGTCGGCTTTG
* **
142589 ATTCTGGAGACTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTT-C
65 ATCCTGGAGACT-TTTCATTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* * *
142650 CTTAGTCTGCCTGTCGGCCTTGACCCTGGAGACTTTTCTTCCCTTAGTCTGCTTGTCGGCTTTG-
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGA
* ** * *
142714 TCCCTGAAGACTTTTCAACCCTCAA-TCTACCTGTCGGCTTTGACCCTGGAGACTTTTCTTTCC
66 T-CCTGGAGACTTTTC-A-TTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TTCC
* * * * * * ** *
142777 CTAAGTCTGCCTATCGGCTTCGTCCCTAGAGACTTTCTTTCCCCCAGTCTACCTGTCGGCTTTGA
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGA
* * * *
142842 CCCTGGAGACTTTTC-TTTCCCTAAGTCTGCCTGTCGGCTTTGGCCCTAGAGACTTTTCTTCC
66 TCCTGGAGACTTTTCATTT---AAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
*
142904 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTCAGTCTGCCTGTCAGCTTTG
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTT-AGTCTGCCTGTCGGCTTTG
* **
142969 ATTCTGGAGACTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
65 ATCCTGGAGACT-TTTCATTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
* * * *
143031 CTTAGTCTGCCTGTCGGCCTTGACCCTGGAGACTTTTCATCCCTTAGTCTGCCTGTCGGTTTTGA
1 CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGA
* * * *
143096 -CCTTGGAGACTTTTC-TTTCCCTAAGTCTGCCCGTTGGCTTTGACCCGGGAGA
66 TCC-TGGAGACTTTTCATTT---AAAGTCTGCCTGTCGGCTTTGACCCTGGAGA
143148 GTATTTTTTT
Statistics
Matches: 532, Mismatches: 71, Indels: 42
0.82 0.11 0.07
Matches are distributed among these distances:
124 7 0.01
125 61 0.11
126 80 0.15
127 291 0.55
128 83 0.16
129 4 0.01
130 6 0.01
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.36
Consensus pattern (125 bp):
CTTAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGA
TCCTGGAGACTTTTCATTTAAAGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTTCC
Found at i:143609 original size:38 final size:38
Alignment explanation
Indices: 143566--143693 Score: 179
Period size: 38 Copynumber: 3.3 Consensus size: 38
143556 TTTTTTTTTC
143566 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
1 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
143604 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
1 ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
* *
143642 TTCATGCATGCATAATTTTCATTTCATGCTTTTCACGTAACAT
1 AT--TGCATGC---ATTTTCATTTCATGTTTTTCACGTAACAT
143685 -TT-CATGCAT
1 ATTGCATGCAT
143694 GCATAATTTT
Statistics
Matches: 83, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
36 2 0.02
38 39 0.47
39 5 0.06
40 8 0.10
42 1 0.01
43 28 0.34
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (38 bp):
ATTGCATGCATTTTCATTTCATGTTTTTCACGTAACAT
Found at i:143660 original size:43 final size:43
Alignment explanation
Indices: 143575--143712 Score: 223
Period size: 43 Copynumber: 3.3 Consensus size: 43
143565 CATTGCATGC
*
143575 ATTTTCATTTCATGTTTTTCACGTAACATAT--TGCATGC---
1 ATTTTCATTTCATGTTTTTCACGTAACATTTCATGCATGCATA
143613 ATTTTCATTTCATGTTTTTCACGTAACATTTCATGCATGCATA
1 ATTTTCATTTCATGTTTTTCACGTAACATTTCATGCATGCATA
*
143656 ATTTTCATTTCATGCTTTTCACGTAACATTTCATGCATGCATA
1 ATTTTCATTTCATGTTTTTCACGTAACATTTCATGCATGCATA
143699 ATTTTCATTTCATG
1 ATTTTCATTTCATG
143713 CATTTCAAAA
Statistics
Matches: 93, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
38 30 0.32
40 7 0.08
43 56 0.60
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (43 bp):
ATTTTCATTTCATGTTTTTCACGTAACATTTCATGCATGCATA
Found at i:143667 original size:22 final size:22
Alignment explanation
Indices: 143639--143715 Score: 81
Period size: 22 Copynumber: 3.5 Consensus size: 22
143629 TTTCACGTAA
143639 CATTTCATGCATGCATAATTTT
1 CATTTCATGCATGCATAATTTT
* *
143661 CATTTCATGCTTTTCACGTAA----
1 CATTTCATGC-ATGCA--TAATTTT
143682 CATTTCATGCATGCATAATTTT
1 CATTTCATGCATGCATAATTTT
143704 CATTTCATGCAT
1 CATTTCATGCAT
143716 TTCAAAAACA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
18 3 0.07
20 3 0.07
21 10 0.23
22 22 0.50
23 3 0.07
25 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (22 bp):
CATTTCATGCATGCATAATTTT
Found at i:143687 original size:21 final size:21
Alignment explanation
Indices: 143618--143691 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
143608 CATGCATTTT
*
143618 CATTTCATGTTTTTCACGTAA
1 CATTTCATGCTTTTCACGTAA
* *
143639 CATTTCATGC-ATGCA--TAA
1 CATTTCATGCTTTTCACGTAA
143657 TTTTCATTTCATGCTTTTCACGTAA
1 ----CATTTCATGCTTTTCACGTAA
143682 CATTTCATGC
1 CATTTCATGC
143692 ATGCATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
18 3 0.07
20 3 0.07
21 19 0.46
22 10 0.24
23 3 0.07
25 3 0.07
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.45
Consensus pattern (21 bp):
CATTTCATGCTTTTCACGTAA
Found at i:143740 original size:5 final size:5
Alignment explanation
Indices: 143730--143814 Score: 82
Period size: 5 Copynumber: 17.0 Consensus size: 5
143720 AAAACATTTT
* * * *
143730 ATTGC ATTGC ACTT-C ATTGC ATTTC ATTGC ATTGC ATTTC ATTTC ATTTC
1 ATTGC ATTGC A-TTGC ATTGC ATTGC ATTGC ATTGC ATTGC ATTGC ATTGC
* * * *
143780 ATTTC ATTTC ATTGC ATTGC ATTTC ATTAC ATTGC
1 ATTGC ATTGC ATTGC ATTGC ATTGC ATTGC ATTGC
143815 TTTCATGCAT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
4 2 0.03
5 67 0.94
6 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (5 bp):
ATTGC
Found at i:143747 original size:10 final size:10
Alignment explanation
Indices: 143734--143812 Score: 95
Period size: 10 Copynumber: 7.9 Consensus size: 10
143724 CATTTTATTG
*
143734 CATTGCACTT
1 CATTGCATTT
143744 CATTGCATTT
1 CATTGCATTT
*
143754 CATTGCATTG
1 CATTGCATTT
*
143764 CATTTCATTT
1 CATTGCATTT
*
143774 CATTTCATTT
1 CATTGCATTT
* *
143784 CATTTCATTG
1 CATTGCATTT
143794 CATTGCATTT
1 CATTGCATTT
*
143804 CATTACATT
1 CATTGCATT
143813 GCTTTCATGC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 61 1.00
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.49
Consensus pattern (10 bp):
CATTGCATTT
Found at i:143750 original size:15 final size:15
Alignment explanation
Indices: 143724--143824 Score: 116
Period size: 15 Copynumber: 6.9 Consensus size: 15
143714 ATTTCAAAAA
*
143724 CATTTTATTGCATTG
1 CATTTCATTGCATTG
* *
143739 CACTTCATTGCATTT
1 CATTTCATTGCATTG
* *
143754 CATTGCATTGCATTT
1 CATTTCATTGCATTG
* *
143769 CATTTCATTTCATTT
1 CATTTCATTGCATTG
143784 CATTTCATTGCATTG
1 CATTTCATTGCATTG
*
143799 CATTTCATTACATTG
1 CATTTCATTGCATTG
143814 C-TTTCA-TGCAT
1 CATTTCATTGCAT
143825 GAAATGGCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
13 4 0.05
14 5 0.07
15 66 0.88
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.50
Consensus pattern (15 bp):
CATTTCATTGCATTG
Found at i:146224 original size:21 final size:21
Alignment explanation
Indices: 146174--146224 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
146164 AAAAAAGAAG
*
146174 TGTACATATAGTTATGTTTAA
1 TGTACATATAGTTATGTATAA
* *
146195 TTTAAATATAGTTATGTCAT-A
1 TGTACATATAGTTATGT-ATAA
146216 TGTACATAT
1 TGTACATAT
146225 TATTATACTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (21 bp):
TGTACATATAGTTATGTATAA
Found at i:146670 original size:18 final size:18
Alignment explanation
Indices: 146647--146681 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
146637 ATATAAACAT
*
146647 TGTTATAGTCATATGTAA
1 TGTTATAATCATATGTAA
*
146665 TGTTATAATGATATGTA
1 TGTTATAATCATATGTA
146682 TATATAAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (18 bp):
TGTTATAATCATATGTAA
Found at i:147524 original size:20 final size:20
Alignment explanation
Indices: 147504--147544 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
147494 TTATTGACAT
147504 AAAGAGTCGATTCCTTTCATA
1 AAAG-GTCGATTCCTTTCATA
147525 AAAGGTCGATTCCTTTCATA
1 AAAGGTCGATTCCTTTCATA
147545 GAGGGATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (20 bp):
AAAGGTCGATTCCTTTCATA
Found at i:147625 original size:22 final size:22
Alignment explanation
Indices: 147566--147618 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
147556 TTCTTTGAAT
147566 AAAACAATATGTATATATAGTA
1 AAAACAATATGTATATATAGTA
147588 AAAACAATATGTATATATAGTA
1 AAAACAATATGTATATATAGTA
*
147610 AAAATAATA
1 AAAACAATA
147619 GCTATATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (22 bp):
AAAACAATATGTATATATAGTA
Found at i:148100 original size:62 final size:62
Alignment explanation
Indices: 148034--148186 Score: 177
Period size: 64 Copynumber: 2.4 Consensus size: 62
148024 AAAATTTGGC
* *
148034 TTTCTTTCTTAATTTCTGCATTTTTAGCAT-AAGA-AGTCGATT-TCTTTTTTAGAAGAGTTGAT
1 TTTCTTTCTTAATTT-TGCATTTTTAGCATAAAAAGAGTCGGTTCTC-TTTTTAGAA-AGTTGAT
** *
148096 TTTCTTTCTTAATTATTTTATTTTTAGCATAAAAAGAGTCGGTTCTCTTTTTGGAAAGTTGAT
1 TTTCTTTCTTAATT-TTGCATTTTTAGCATAAAAAGAGTCGGTTCTCTTTTTAGAAAGTTGAT
*
148159 TCTCTTTCTTAAATTTGTGCATTTTTAG
1 TTTCTTTCTT-AATTT-TGCATTTTTAG
148187 TGATCTTGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
62 26 0.34
63 21 0.27
64 28 0.36
65 2 0.03
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.52
Consensus pattern (62 bp):
TTTCTTTCTTAATTTTGCATTTTTAGCATAAAAAGAGTCGGTTCTCTTTTTAGAAAGTTGAT
Found at i:148186 original size:64 final size:62
Alignment explanation
Indices: 148036--148186 Score: 168
Period size: 63 Copynumber: 2.4 Consensus size: 62
148026 AATTTGGCTT
* *
148036 TCTTTCTT-AATTTCTGCATTTTTAGCATAAGAAGTCGATTTCTTTTTTAGAAGAGTTGATTT
1 TCTTTCTTAAATTT-TGCATTTTTAGCATAAAAAGTCGATTTCTTTTTTAGAAGAGTTGATTC
* *
148098 TCTTTCTTAATTATTTT--ATTTTTAGCATAAAAAGAGTCG-GTTCTCTTTTTGGAA-AGTTGAT
1 TCTTTCTTAA--ATTTTGCATTTTTAGCAT-AAAA-AGTCGATTTCT-TTTTTAGAAGAGTTGAT
148159 TC
61 TC
148161 TCTTTCTTAAATTTGTGCATTTTTAG
1 TCTTTCTTAAATTT-TGCATTTTTAG
148187 TGATCTTGAA
Statistics
Matches: 76, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
61 4 0.05
62 20 0.26
63 26 0.34
64 22 0.29
65 4 0.05
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.51
Consensus pattern (62 bp):
TCTTTCTTAAATTTTGCATTTTTAGCATAAAAAGTCGATTTCTTTTTTAGAAGAGTTGATTC
Found at i:150129 original size:14 final size:14
Alignment explanation
Indices: 150081--150130 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
150071 TAAAATTTTA
150081 AAAATATAAAAATT
1 AAAATATAAAAATT
* *
150095 AAAGTACTAAATA-T
1 AAAATA-TAAAAATT
150109 AACAATATAAAAATT
1 AA-AATATAAAAATT
150124 AAAATAT
1 AAAATAT
150131 TTTATTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:151402 original size:22 final size:22
Alignment explanation
Indices: 151372--151420 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
151362 TATCATAAAT
*
151372 GTAAGTATTTAGAAATAAAGAA
1 GTAAGTATTCAGAAATAAAGAA
* *
151394 GTAATTATTCAGAACTAAAGAA
1 GTAAGTATTCAGAAATAAAGAA
*
151416 ATAAG
1 GTAAG
151421 CTAGAAGAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.04, G:0.16, T:0.27
Consensus pattern (22 bp):
GTAAGTATTCAGAAATAAAGAA
Found at i:152091 original size:18 final size:18
Alignment explanation
Indices: 152056--152099 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
152046 TTATTCTCTT
* *
152056 TTATTTTTTTACTTAAAA
1 TTATTTTTTAACTCAAAA
152074 -TATTTTTTAACTACAAAA
1 TTATTTTTTAACT-CAAAA
152092 TTATTTTT
1 TTATTTTT
152100 AATTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 11 0.50
18 4 0.18
19 7 0.32
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATTTTTTAACTCAAAA
Found at i:152539 original size:14 final size:16
Alignment explanation
Indices: 152510--152545 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
152500 TAAAATATAT
152510 TTTTTATATATTTTTA
1 TTTTTATATATTTTTA
152526 TTTTTAT-T-TTTTTA
1 TTTTTATATATTTTTA
152540 TTTTTA
1 TTTTTA
152546 ACCACTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 12 0.60
15 1 0.05
16 7 0.35
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTATATATTTTTA
Found at i:153176 original size:18 final size:18
Alignment explanation
Indices: 153155--153201 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
153145 TGGTAGATTT
*
153155 ATTTATTATTTTTATAAA
1 ATTTATTATTTTCATAAA
*
153173 ATTT-TTATATTTCCTAAA
1 ATTTATTAT-TTTCATAAA
153191 ATATTATTATT
1 AT-TTATTATT
153202 GAATATTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 4 0.17
18 13 0.54
19 3 0.12
20 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTATTATTTTCATAAA
Found at i:153246 original size:13 final size:13
Alignment explanation
Indices: 153228--153287 Score: 50
Period size: 15 Copynumber: 4.3 Consensus size: 13
153218 TAAATAATTA
153228 ATATATTTTATAT
1 ATATATTTTATAT
* *
153241 ATATATTTTTTTAAA
1 ATATA-TTTTAT-AT
153256 ATATTATTTTATATT
1 ATA-TATTTTATA-T
153271 AATATATTTTA-AT
1 -ATATATTTTATAT
153284 ATAT
1 ATAT
153288 TGAGATTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
12 4 0.11
13 6 0.16
14 7 0.18
15 16 0.42
16 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATATATTTTATAT
Found at i:155731 original size:2 final size:2
Alignment explanation
Indices: 155726--155753 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
155716 ACACACACAC
155726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155754 GAAAACTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:162202 original size:31 final size:32
Alignment explanation
Indices: 162141--162202 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
162131 ATAGGTAAAT
*
162141 ATATTAAAATTTATATTAAATAAATTATTAAC
1 ATATTAAAATTTATATTAAATAAATAATTAAC
*
162173 ATATTAAAATTTATA-TAAATATATAATTAA
1 ATATTAAAATTTATATTAAATAAATAATTAA
162203 AAATTATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (32 bp):
ATATTAAAATTTATATTAAATAAATAATTAAC
Found at i:162898 original size:11 final size:11
Alignment explanation
Indices: 162875--162955 Score: 52
Period size: 11 Copynumber: 7.9 Consensus size: 11
162865 ATATATGGAA
*
162875 TTAT-TTAATT
1 TTATATTAAAT
162885 TTATATTAAAT
1 TTATATTAAAT
162896 TTAT-TT-AA-
1 TTATATTAAAT
*
162904 TTATATTTTAA-
1 TTATA-TTAAAT
*
162915 TTA-ATT-TAT
1 TTATATTAAAT
*
162924 TTATTTTAAAT
1 TTATATTAAAT
162935 TTATATTAAA-
1 TTATATTAAAT
162945 TTATAATTAAA
1 TTAT-ATTAAA
162956 ATTTTATATA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
8 5 0.09
9 7 0.12
10 15 0.26
11 31 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATATTAAAT
Found at i:162942 original size:25 final size:24
Alignment explanation
Indices: 162875--162948 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 24
162865 ATATATGGAA
*
162875 TTATTTAATTTTATATTAAATTTAT
1 TTATTTAAATTTATATT-AATTTAT
* *
162900 TTAATTATATTT-TAATTAATTTAT
1 TTATTTAAATTTAT-ATTAATTTAT
*
162924 TTATTTTAAATTTATATTAAATTAT
1 TTA-TTTAAATTTATATTAATTTAT
162949 AATTAAAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
24 11 0.28
25 28 0.70
26 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATTTAAATTTATATTAATTTAT
Found at i:162962 original size:39 final size:38
Alignment explanation
Indices: 162884--162981 Score: 94
Period size: 39 Copynumber: 2.5 Consensus size: 38
162874 ATTATTTAAT
* *
162884 TTTATATTAAATTTATTTAATTATATTTTAATTAATTTA
1 TTTATTTTAAATTTATTTAATTATATATTAA-TAATTTA
162923 TTTATTTTAAATTTATATTAAATTATA-ATTAA-AATTTTA
1 TTTATTTTAAATTTAT-TT-AATTATATATTAATAA-TTTA
* *
162962 TATAATTATAAATTT-TTTAA
1 T-TTATTTTAAATTTATTTAA
162982 AAAAATTGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
37 2 0.04
38 4 0.08
39 21 0.41
40 17 0.33
41 7 0.14
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (38 bp):
TTTATTTTAAATTTATTTAATTATATATTAATAATTTA
Found at i:162967 original size:16 final size:17
Alignment explanation
Indices: 162946--162977 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
162936 TATATTAAAT
162946 TATAATTA-AAATTTTA
1 TATAATTATAAATTTTA
162962 TATAATTATAAATTTT
1 TATAATTATAAATTTT
162978 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATAATTATAAATTTTA
Found at i:163709 original size:139 final size:139
Alignment explanation
Indices: 163458--163720 Score: 440
Period size: 139 Copynumber: 1.9 Consensus size: 139
163448 GATGTGACCC
* * *
163458 ATACCAAATCATTTCGAAGAAAGGTTAAAATTTTCAGAAAAATATTATCAATAAAAAATTATAAT
1 ATACCAAATCATTACGAAGAAAAGTTAAAATTTTCAAAAAAATATTATCAATAAAAAATTATAAT
*
163523 TTTTTAAAAAATATTAAAATTTGATGTGACTTATATCAAACTTTTCAGACAAAAAATTATTGCTT
66 TTTTTAAAAAATATTAAAACTTGATGTGACTTATATCAAACTTTTCAGA-AAAAAATTATTGCTT
163588 GGCATGATTT
130 GGCATGATTT
*
163598 ATACCAAATCATTACGAAGAAAAGTTAAAATTTTTAAAAAAATATTAT-AATAAAAAATTATAAT
1 ATACCAAATCATTACGAAGAAAAGTTAAAATTTTCAAAAAAATATTATCAATAAAAAATTATAAT
*
163662 TTTTTAAAAAATATTAAAGCTTGATGTGACTTATA-CTAAACTTTTCAGAAAAAAATTAT
66 TTTTTAAAAAATATTAAAACTTGATGTGACTTATATC-AAACTTTTCAGAAAAAAATTAT
163721 AATTTCAAAA
Statistics
Matches: 116, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
138 11 0.09
139 61 0.53
140 44 0.38
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (139 bp):
ATACCAAATCATTACGAAGAAAAGTTAAAATTTTCAAAAAAATATTATCAATAAAAAATTATAAT
TTTTTAAAAAATATTAAAACTTGATGTGACTTATATCAAACTTTTCAGAAAAAAATTATTGCTTG
GCATGATTT
Found at i:163735 original size:158 final size:158
Alignment explanation
Indices: 163573--164014 Score: 737
Period size: 157 Copynumber: 2.8 Consensus size: 158
163563 CTTTTCAGAC
163573 AAAAAATTATTGCTTGGCATGATTTATACCAAATCATTACGAAGAAAAGTTAAAATTTTTAAAAA
1 AAAAAATTATTGCTTGGCATGATTTATACCAAATCATTACGAAGAAAAGTTAAAATTTTTAAAAA
* *
163638 AATATTAT-AATAAAAAATTATAATTTTTTAAAAAATATTAAAGCTTGATGTGACTTATACTAAA
66 AATATTATCAATAAAAAATTATAATTTTTTAAAAAATATTAAAGTTTGATGTGACTTATACCAAA
163702 CTTTTCAGA-AAAAAATTATAATTTCAAA
131 CTTTTCAGACAAAAAATTATAATTTC-AA
* * *
163730 AAAAAATTATCGCTTGGCATGATTTATATCAAATCATTACGAAGAAAAGTTAAAATTTTTAGAAA
1 AAAAAATTATTGCTTGGCATGATTTATACCAAATCATTACGAAGAAAAGTTAAAATTTTTAAAAA
* *
163795 AATATTATCAATAAAAAATTATAATTTTTT-AAAAATATTAAAGTTTGATGTGACTTCTACCAAG
66 AATATTATCAATAAAAAATTATAATTTTTTAAAAAATATTAAAGTTTGATGTGACTTATACCAAA
*
163859 CTTTTCAGACAAAAAATTATAATTTCGA
131 CTTTTCAGACAAAAAATTATAATTTCAA
* * * *
163887 AAAAAATTATTGCTTGGAATGATTTATACCAAACCATTACGAAGAAAAGTTCAAATTTTTATAAA
1 AAAAAATTATTGCTTGGCATGATTTATACCAAATCATTACGAAGAAAAGTTAAAATTTTTAAAAA
*
163952 AATATTATCAATAAAAAATTATAATTTTTTAAAAAATATTAAAGTTTGATGTGACTTCTACCA
66 AATATTATCAATAAAAAATTATAATTTTTTAAAAAATATTAAAGTTTGATGTGACTTATACCA
164015 TGGCATGATT
Statistics
Matches: 268, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
157 199 0.74
158 69 0.26
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (158 bp):
AAAAAATTATTGCTTGGCATGATTTATACCAAATCATTACGAAGAAAAGTTAAAATTTTTAAAAA
AATATTATCAATAAAAAATTATAATTTTTTAAAAAATATTAAAGTTTGATGTGACTTATACCAAA
CTTTTCAGACAAAAAATTATAATTTCAA
Done.