genome.fa.s2314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2314
Parameters: 2 7 7 80 10 50 1000
Length:  519745

Tables:   1   2   

This is table  1  of  2  ( 132 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2103--6421	477	9.0	476	82	7	4866	31	18	14	35	1.91
2125--6421	953	4.5	948	84	7	4910	31	18	14	35	1.91
9044--9088	21	2.1	21	84	8	56	53	4	20	22	1.63
10892--10922	15	2.1	15	93	0	53	48	16	22	12	1.80
12992--13030	13	3.0	13	96	0	69	33	15	12	38	1.85
15033--15208	88	2.0	88	100	0	352	42	14	19	23	1.88
15656--15681	13	2.0	13	100	0	52	38	15	15	30	1.88
16431--92985	475	161.1	476	92	1	114776	30	18	14	36	1.91
98314--98389	21	3.5	20	66	20	53	13	19	10	56	1.65
98303--98396	46	2.0	46	100	0	188	12	20	10	56	1.66
98313--98409	46	2.1	46	90	3	151	16	18	9	55	1.67
101284--105341	476	8.6	475	87	2	5522	30	18	14	36	1.91
101268--105341	953	4.3	951	86	2	5596	30	18	14	36	1.91
106964--107039	12	6.9	11	75	15	52	39	2	48	9	1.49
106963--107048	24	3.8	24	72	17	85	41	2	45	10	1.51
106954--107072	42	2.8	42	90	0	184	42	2	45	9	1.49
111257--111350	47	2.0	45	95	4	170	13	20	10	55	1.68
111267--111363	45	2.1	47	86	7	137	17	18	9	54	1.69
114236--118292	476	8.6	475	87	2	5513	30	18	14	36	1.91
114220--118292	953	4.3	951	86	2	5587	30	18	14	36	1.91
119916--119991	12	6.9	11	75	15	52	39	2	48	9	1.49
119915--120000	24	3.8	24	72	17	85	41	2	45	10	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119906--120024	42	2.8	42	92	0	193	42	2	46	8	1.47
124218--124293	21	3.5	20	66	20	53	13	19	10	56	1.65
124207--124300	46	2.0	46	100	0	188	12	20	10	56	1.66
124217--124313	46	2.1	46	90	3	151	16	18	9	55	1.67
127188--131244	476	8.6	475	87	2	5504	30	18	14	36	1.91
127172--131244	953	4.3	951	86	2	5578	30	18	14	36	1.91
132868--132943	12	6.9	11	75	15	52	39	2	48	9	1.49
132867--132952	24	3.8	24	72	17	85	41	2	45	10	1.51
132858--132976	42	2.8	42	92	0	193	42	2	46	8	1.47
139257--186989	476	100.0	475	84	4	49932	31	18	14	35	1.91
137958--294557	952	163.2	950	83	6	131252	31	17	15	35	1.91
151673--152119	227	2.0	227	86	3	632	34	19	12	33	1.89
154277--154723	227	2.0	227	86	3	632	34	19	12	33	1.89
169665--186981	159	109.3	158	63	12	1762	32	18	14	34	1.91
174311--186897	159	79.4	160	65	13	2666	32	18	14	34	1.91
187955--188244	79	3.7	78	78	4	278	30	15	26	26	1.96
188201--188272	28	2.6	27	86	6	99	25	23	29	22	1.99
188053--188427	183	2.0	184	84	2	493	30	17	26	25	1.97
188120--188347	104	2.2	105	83	4	280	29	17	28	24	1.97
188230--188557	79	4.2	77	84	5	356	31	14	27	27	1.95
188230--188557	158	2.1	154	84	5	417	31	14	27	27	1.95
188523--188636	51	2.2	51	85	3	158	34	8	25	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191752--191851	42	2.4	42	86	8	134	43	10	28	19	1.83
191946--192716	61	13.3	59	83	9	705	26	19	26	27	1.99
191946--192716	116	6.7	117	84	7	795	26	19	26	27	1.99
191946--192689	55	12.9	55	86	5	605	26	19	26	27	1.99
192196--192281	28	3.1	28	63	21	72	25	20	26	26	1.99
194456--194544	26	3.3	26	64	22	67	22	16	30	30	1.96
194131--194775	55	11.2	59	83	8	556	25	19	27	26	1.99
195658--210107	476	30.0	476	78	8	7585	31	17	14	35	1.91
197765--198405	159	4.0	160	64	16	378	32	18	14	34	1.91
195658--210107	951	15.0	952	74	10	7276	31	17	14	35	1.91
199174--199802	312	2.0	312	91	0	1006	32	16	14	36	1.89
200933--201450	255	2.0	255	88	1	770	33	17	15	34	1.91
203820--204659	417	2.0	417	88	1	1263	31	19	14	34	1.92
206628--206948	162	2.0	163	86	1	448	29	20	11	38	1.89
206152--207426	637	2.0	639	90	2	1992	31	18	13	36	1.90
209837--210354	255	2.0	255	89	0	777	33	17	15	34	1.91
210465--210754	150	1.9	149	88	2	438	29	18	15	35	1.92
210469--210855	150	2.5	150	80	6	368	31	18	16	33	1.93
210615--294557	476	176.4	476	92	1	128021	31	17	14	35	1.90
220731--294209	159	463.1	159	63	15	5380	31	17	14	35	1.90
294132--294979	422	2.0	422	94	0	1473	32	18	13	36	1.89
294554--333293	476	81.4	476	92	1	59911	32	17	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294977--332268	159	235.2	157	63	15	3776	32	17	14	35	1.90
333567--336877	476	7.0	475	91	1	4940	31	18	14	35	1.90
337151--340461	476	7.0	475	91	1	4931	31	18	14	35	1.90
340735--347853	476	15.0	475	92	1	10742	31	17	14	35	1.90
340776--347163	159	40.3	157	63	13	771	31	17	14	35	1.90
348122--350498	476	5.0	475	91	1	3340	31	18	14	35	1.90
350759--354069	476	7.0	476	91	1	4909	31	18	14	35	1.91
350759--370476	952	20.5	951	74	11	6069	31	17	14	36	1.90
354338--356179	476	3.9	475	88	1	2787	31	18	14	35	1.91
355773--356579	399	2.0	399	87	2	1145	30	17	15	36	1.91
355298--357055	875	2.0	874	91	1	2858	31	17	15	36	1.91
356172--370476	476	30.0	475	80	6	10153	31	17	14	36	1.90
360779--361463	317	2.2	318	90	1	989	33	18	13	35	1.89
360305--361906	793	2.0	792	86	1	2219	32	17	13	36	1.90
363861--364248	200	1.9	200	88	4	586	30	16	13	39	1.87
368083--368118	18	1.9	19	88	5	56	30	25	5	38	1.78
370056--372331	476	5.0	428	73	15	1388	31	17	14	36	1.90
370471--376665	476	13.0	476	89	1	9262	31	18	14	36	1.90
370481--375812	159	33.6	158	63	12	608	31	17	14	36	1.90
375238--375910	159	4.2	159	66	12	376	32	17	14	35	1.91
377410--377477	33	2.1	32	91	2	109	32	14	19	33	1.92
377432--377457	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377509--377563	20	2.7	21	80	2	67	27	14	14	43	1.84
379563--379613	20	2.4	21	83	9	68	5	25	47	21	1.73
379575--379613	20	1.9	21	94	5	71	7	23	46	23	1.78
386053--386862	407	2.0	407	91	0	1327	31	17	14	37	1.89
386458--387830	475	2.9	475	89	1	2056	31	17	14	36	1.90
387827--389943	475	4.5	476	87	2	2963	31	18	14	36	1.90
391558--391680	42	3.0	42	87	1	176	44	3	43	8	1.50
396649--397908	476	2.6	475	88	1	1869	30	18	14	36	1.91
398283--398326	20	2.2	20	84	8	54	27	11	25	36	1.90
398999--400397	476	2.9	472	87	4	1827	31	17	14	36	1.90
400167--400216	24	2.1	24	88	0	73	32	14	16	38	1.88
400193--400631	233	1.9	233	87	1	639	31	18	12	38	1.87
400401--402042	474	3.4	474	88	3	2274	31	17	13	36	1.89
401848--401897	24	2.1	24	88	0	73	32	16	16	36	1.90
402093--425133	476	48.5	476	90	1	34736	31	18	14	36	1.90
425138--481057	474	117.9	476	87	1	70703	31	18	14	35	1.91
474789--479212	158	28.0	157	63	15	509	32	18	13	34	1.90
480685--481401	376	1.9	376	88	1	1080	33	18	13	34	1.90
480209--481875	852	2.0	852	89	0	2532	32	18	13	35	1.90
481061--484839	475	7.9	475	85	1	4834	32	18	14	34	1.91
481061--484839	951	4.0	953	84	1	4939	32	18	14	34	1.91
485604--486415	403	2.0	403	93	0	1392	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485128--486891	879	2.0	878	86	1	2460	31	18	14	35	1.91
486007--487762	476	3.7	475	84	2	2304	31	17	14	35	1.91
487110--488402	645	2.0	645	89	1	1982	31	18	14	34	1.92
487765--491696	476	8.3	472	81	5	3748	32	17	14	35	1.90
488824--491696	475	6.0	476	82	3	3360	32	17	13	36	1.89
487765--491696	951	4.2	946	80	5	3785	32	17	14	35	1.90
491528--491814	159	1.8	159	85	4	409	31	17	16	34	1.92
491867--491932	33	2.0	33	93	0	114	33	16	16	33	1.92
491677--494659	476	6.3	472	81	5	2845	31	17	14	36	1.90
496458--496483	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2