genome.fa.s2319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2319
Parameters: 2 7 7 80 10 50 1000
Length:  91249

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--50	18	1.9	18	88	5	54	44	13	11	30	1.79
24--59	18	2.1	17	89	5	54	47	13	5	33	1.67
212--245	18	1.9	18	88	5	52	58	0	0	41	0.98
227--287	18	3.3	19	75	9	63	62	0	3	34	1.12
434--479	11	4.0	12	77	8	51	34	0	0	65	0.93
398--472	31	2.6	30	79	12	77	37	2	0	60	1.11
436--501	22	3.0	23	76	12	68	37	0	0	62	0.96
1669--1705	18	2.1	18	90	10	58	59	0	2	37	1.12
2188--2244	19	3.1	19	72	20	57	64	0	3	31	1.10
2136--2262	61	2.1	62	89	1	193	59	1	7	31	1.33
2168--2247	18	4.0	19	71	12	63	65	0	3	31	1.11
2929--2982	18	2.8	20	78	18	62	38	0	1	59	1.08
2922--2990	18	3.7	18	74	12	59	44	0	1	53	1.09
3305--3363	25	2.2	26	79	11	66	54	0	0	45	0.99
6381--6409	14	2.1	14	100	0	58	34	0	0	65	0.93
6366--6420	22	2.5	22	84	3	65	36	1	0	61	1.06
6383--6424	22	1.9	22	90	9	68	35	0	0	64	0.94
7764--7796	17	2.0	17	94	5	59	66	0	0	33	0.92
8038--8325	146	2.0	147	87	4	408	39	6	12	40	1.70
8723--8797	20	3.8	20	76	0	87	34	13	10	41	1.79
8723--8800	40	2.0	39	87	2	111	34	12	11	41	1.80
16152--16176	9	2.8	9	100	0	50	84	16	0	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17225--18581	82	15.8	83	85	6	844	27	31	16	23	1.96
17223--17787	192	2.9	192	91	1	891	25	31	14	28	1.95
17243--18656	55	24.6	56	82	8	1075	27	31	17	23	1.96
17243--18656	28	49.3	28	82	7	1075	27	31	17	23	1.96
17393--18656	174	7.3	172	81	9	1009	28	31	17	22	1.96
19170--19244	20	3.8	20	80	0	96	33	13	12	41	1.81
19170--19247	40	2.0	39	89	2	120	33	12	12	41	1.82
22657--22703	22	2.2	20	82	14	58	48	12	8	29	1.71
22659--22703	21	2.0	23	87	8	67	48	13	8	28	1.72
22914--22964	20	2.5	20	87	0	75	37	11	19	31	1.88
25698--25748	21	2.3	21	81	18	59	27	0	5	66	1.14
25740--25830	27	3.2	27	72	13	83	56	2	1	40	1.19
25803--25844	15	2.7	16	78	14	52	57	2	0	40	1.12
26077--26136	28	2.1	28	84	6	77	48	0	0	51	1.00
26089--26130	20	2.1	20	86	8	59	47	0	0	52	1.00
26097--26163	11	6.7	10	76	19	68	38	1	0	59	1.06
26096--26149	28	2.0	27	88	3	81	38	1	0	59	1.08
26124--26174	13	4.1	13	78	17	54	33	1	0	64	1.05
26118--26174	11	5.2	11	80	17	57	33	1	0	64	1.04
27255--27288	16	2.1	16	88	5	50	5	8	0	85	0.75
27422--27464	2	21.5	2	95	0	77	53	0	0	46	1.00
29344--29454	57	1.9	57	100	0	222	15	18	15	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32666--32716	2	25.5	2	100	0	102	49	0	0	50	1.00
37707--37759	26	2.2	23	90	10	79	49	0	0	50	1.00
38108--38141	16	2.3	14	90	10	50	88	0	11	0	0.52
38816--38870	2	28.0	2	96	3	103	50	0	0	49	1.00
40819--40894	36	2.1	36	85	11	102	43	0	0	56	0.99
43651--43706	20	2.8	20	87	12	80	23	14	17	44	1.85
43690--43717	13	2.2	13	100	0	56	28	14	14	42	1.84
46069--46236	51	3.3	51	85	5	232	31	29	8	30	1.88
46216--46294	28	2.8	28	86	5	106	21	30	24	24	1.99
46244--46421	79	2.2	80	87	1	250	25	28	16	29	1.97
46357--46473	51	2.3	51	87	0	162	29	27	11	31	1.92
46276--46527	130	1.9	130	90	3	400	25	27	14	32	1.94
46374--46680	153	2.0	155	91	2	501	26	27	13	33	1.93
46637--46859	51	4.4	51	82	2	277	27	27	13	31	1.93
46844--47011	79	2.1	79	84	2	212	30	25	11	32	1.92
55001--55068	21	3.2	22	69	12	61	64	4	1	29	1.21
55570--55619	2	25.5	2	91	4	84	52	2	0	46	1.12
56541--56595	28	2.0	28	92	7	94	58	0	0	41	0.98
57957--59060	456	2.4	456	82	1	1300	29	23	25	21	1.99
57957--59087	228	5.0	226	82	2	1073	29	23	25	21	1.99
70893--71031	39	3.6	39	76	2	136	41	11	6	41	1.67
71383--71432	21	2.4	21	86	6	66	64	0	2	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71491--71548	24	2.3	26	91	5	93	32	25	15	25	1.95
76039--76096	24	2.3	26	91	5	93	32	25	15	25	1.95
77005--77053	2	24.5	2	95	0	89	51	2	0	46	1.12
77920--77969	22	2.3	22	86	6	75	50	0	0	50	1.00
78007--78057	15	3.4	15	76	10	50	54	3	0	41	1.19
79060--79228	91	1.8	92	87	3	252	26	10	19	43	1.83
81180--81219	22	2.0	21	85	14	57	50	7	7	35	1.59
83458--83512	25	2.1	26	80	12	60	47	10	5	36	1.62
85615--85657	2	21.5	2	100	0	86	48	0	0	51	1.00
86359--86402	21	2.0	22	87	12	65	61	11	4	22	1.48
89071--89112	22	1.9	22	85	9	59	38	0	0	61	0.96

Tables:   1

The End!