Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 1 of 16
Found at i:5033 original size:2 final size:2
Alignment explanation
Indices: 5026--5069 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
5016 GCTAACTTAT
5026 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5068 TA
1 TA
5070 AAGTAAGCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5126 original size:2 final size:2
Alignment explanation
Indices: 5113--5147 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
5103 AGCTAACTTT
*
5113 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5148 GCATGTTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:5365 original size:14 final size:14
Alignment explanation
Indices: 5346--5373 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
5336 AGCTCCCCTC
5346 CATTATTATTTAAT
1 CATTATTATTTAAT
5360 CATTATTATTTAAT
1 CATTATTATTTAAT
5374 ACAAATTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
CATTATTATTTAAT
Found at i:5701 original size:277 final size:274
Alignment explanation
Indices: 5183--5719 Score: 869
Period size: 277 Copynumber: 1.9 Consensus size: 274
5173 TTAACTTATA
* * * *
5183 TATATATATTGTAATTAAAGATCTCTTTGAAGTGATTTAACAATTCAACCATTATTAATATTTTA
1 TATATATATTGTAATTAAACATCTCTTCGAAGTGATTTAACAATCCAACCATCATTAATATTTTA
* *
5248 TATAATTTATTATTTTATTTAAAATTAATTTTTAATAAGAAAAAATATATAAAATTATAAAAAAT
66 TATAATTTATCATTTTACTTAAAATTAATTTTTAATAAGAAAAAATATATAAAATTATAAAAAAT
*
5313 TTAGAGCTTAGCAAATAGGAACTAGCTCCCCTCCATTATTATTTAATCATTATTATTTAATACAA
131 TTAAAGCTTAGCAAATAGGAACTAGCTCCCCTCCATTATTATTTAATCATTATTATTTAATACAA
*
5378 ATTTAGTTAACATTCACGAGCATAATTTTTATAATTTATAAATAAATCTTACGCATATAAATAAT
196 ATTTAATTAACATTCACGAGCATAATTTTTATAATTTATAAATAAATCTTACGCATATAAATAAT
5443 GATAATTTATAATT
261 GATAATTTATAATT
* *
5457 TATATATATTGTAGTTAAAAAACATCTCTTCGAAGTGGTTTAACAATCCAACCATCATTAATATT
1 TATATATATTGTAATT---AAACATCTCTTCGAAGTGATTTAACAATCCAACCATCATTAATATT
** *
5522 TTATATTGTTTATCATTTTACTTAAAATTAATTTTTAATAAGTAAAAATATATAAAATTATAAAA
63 TTATATAATTTATCATTTTACTTAAAATTAATTTTTAATAAGAAAAAATATATAAAATTATAAAA
5587 AATTTAAAGCTTAGCAAATAGGAACTAGCTCCCCTCCATTAATT-TTTAATCATTATTATTTAAT
128 AATTTAAAGCTTAGCAAATAGGAACTAGCTCCCCTCCATT-ATTATTTAATCATTATTATTTAAT
* * * * *
5651 ACAAATTTAATTAGCATTTACGAGCATAATTTTTATAATTTATGAATAAATCTTATGCATGTAAA
192 ACAAATTTAATTAACATTCACGAGCATAATTTTTATAATTTATAAATAAATCTTACGCATATAAA
5716 TAAT
257 TAAT
5720 AATTATTAGT
Statistics
Matches: 241, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
274 15 0.06
277 223 0.93
278 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (274 bp):
TATATATATTGTAATTAAACATCTCTTCGAAGTGATTTAACAATCCAACCATCATTAATATTTTA
TATAATTTATCATTTTACTTAAAATTAATTTTTAATAAGAAAAAATATATAAAATTATAAAAAAT
TTAAAGCTTAGCAAATAGGAACTAGCTCCCCTCCATTATTATTTAATCATTATTATTTAATACAA
ATTTAATTAACATTCACGAGCATAATTTTTATAATTTATAAATAAATCTTACGCATATAAATAAT
GATAATTTATAATT
Found at i:7170 original size:29 final size:32
Alignment explanation
Indices: 7138--7205 Score: 79
Period size: 32 Copynumber: 2.1 Consensus size: 32
7128 TTAATATGAA
7138 TTATT-ATTTAATAATAAAAAT-TAT-ATATT
1 TTATTAATTTAATAATAAAAATATATAATATT
*
7167 TTATTTAAATTTAATTATAAAAATATATAAATATT
1 TTA-TT-AATTTAATAATAAAAATATAT-AATATT
7202 TTAT
1 TTAT
7206 AAAAATAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 3 0.09
30 2 0.06
32 15 0.47
33 3 0.09
34 1 0.03
35 8 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (32 bp):
TTATTAATTTAATAATAAAAATATATAATATT
Found at i:9302 original size:2 final size:2
Alignment explanation
Indices: 9295--9337 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
9285 TTTATTTGTT
9295 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9337 T
1 T
9338 CTTCAATCTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11405 original size:41 final size:41
Alignment explanation
Indices: 11346--11427 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
11336 CTAATCCAAG
*
11346 CCAAAGTTTGAAAGGATCTAGCTCTTTTCATTACTTTTCTA
1 CCAAAGTTTGAAAAGATCTAGCTCTTTTCATTACTTTTCTA
11387 CCAAAGTTTGAAAAGATCTAGCTCTTTTCATTACTTTTCTA
1 CCAAAGTTTGAAAAGATCTAGCTCTTTTCATTACTTTTCTA
11428 TCTATTGTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (41 bp):
CCAAAGTTTGAAAAGATCTAGCTCTTTTCATTACTTTTCTA
Found at i:12168 original size:21 final size:22
Alignment explanation
Indices: 12113--12172 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
12103 ATATGTTTTA
* *
12113 GGATGAAAAGATACA-CTGATT
1 GGATGAAAAGATGCATTTGATT
* *
12134 GGATAAAAAAATGCATTTG-TT
1 GGATGAAAAGATGCATTTGATT
12155 GGATGAAAAGATGCATTT
1 GGATGAAAAGATGCATTT
12173 TTTATAGCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (22 bp):
GGATGAAAAGATGCATTTGATT
Found at i:15159 original size:23 final size:23
Alignment explanation
Indices: 15133--15180 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
15123 GAGACATAAG
*
15133 TATGTTAGGTAGTTAATAAAATA
1 TATGTAAGGTAGTTAATAAAATA
15156 TATGTAAGGTAGTTAATAAAATA
1 TATGTAAGGTAGTTAATAAAATA
15179 TA
1 TA
15181 GTATAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.38
Consensus pattern (23 bp):
TATGTAAGGTAGTTAATAAAATA
Found at i:15952 original size:21 final size:21
Alignment explanation
Indices: 15903--15978 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
15893 AAAAAAACAT
* *
15903 TTAGATGAAAAGAT-CAATTGG
1 TTAGATGAAAAAATGC-ATTTG
15924 TT-GAATGAAAAAATGCATTTG
1 TTAG-ATGAAAAAATGCATTTG
** *
15945 TTAGATGAAAGTATGCATTTA
1 TTAGATGAAAAAATGCATTTG
15966 TTAGATGAAAAAA
1 TTAGATGAAAAAA
15979 ATACGTTCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 42 0.93
22 2 0.04
ACGTcount: A:0.45, C:0.04, G:0.20, T:0.32
Consensus pattern (21 bp):
TTAGATGAAAAAATGCATTTG
Found at i:16319 original size:20 final size:20
Alignment explanation
Indices: 16289--16335 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
16279 ATTTGTGTCA
16289 ATACAATAAGTTG-ATATATCG
1 ATAC-ATAAG-TGAATATATCG
*
16310 ATACATAAGTGAATGTATCG
1 ATACATAAGTGAATATATCG
16330 ATACAT
1 ATACAT
16336 GTTTGTAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 2 0.08
20 18 0.75
21 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (20 bp):
ATACATAAGTGAATATATCG
Found at i:16448 original size:20 final size:20
Alignment explanation
Indices: 16393--16448 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
16383 TTGGTCAAAA
* *
16393 ATTGTATCAATACATAAATG
1 ATTGTATCAATACATTAATC
* * *
16413 AATGTATCGATACATTATTC
1 ATTGTATCAATACATTAATC
16433 ATTGTATCAATACATT
1 ATTGTATCAATACATT
16449 TTAGGTTTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (20 bp):
ATTGTATCAATACATTAATC
Found at i:18973 original size:79 final size:79
Alignment explanation
Indices: 18885--19259 Score: 384
Period size: 80 Copynumber: 4.7 Consensus size: 79
18875 CTAACAGCCA
* * ** * *
18885 TTTTCACTTCTAAAACATCAAATTTTTTATCTCTAGGGATACTCCAACCCCACTATCTTCGATAA
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCATCTTCGA-AA
*
18950 GG-ACTCTAACCCCA
65 GGAACTCTAACCCCG
** * * * * *
18964 TTTTTACTTCCAAAATGTCGAATGTTTCATCGCTGGGGATACTCCAACCTCACCATCTTCGAAGA
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCATCTTCGAA-A
* *
19029 GAAACT-TCAACCTCG
65 GGAACTCT-AACCCCG
* *
19044 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCTTCTTCGAAGG
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCATCTTCGAAAG
* *
19109 GATATTCCAACCCCG
66 GA-ACTCTAACCCCG
* * * * * * *
19124 TTTTTACTTCTAAAACATTAAATTCTTCAT-TTTAAGGATACTCCAACACCACCATC-TCTGAAG
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCATCTTC-GAAA
19187 GGATACTCTAA-CCCG
65 GGA-ACTCTAACCCCG
* * *
19202 TTTTTACTTCCAAAACATTGAATTCTTCATTTCTA-GGATACTCCAACACCACCATCTT
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCATCTT
19260 TGAAGGGGTA
Statistics
Matches: 249, Mismatches: 39, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
78 56 0.22
79 95 0.38
80 98 0.39
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (79 bp):
TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCATCTTCGAAAG
GAACTCTAACCCCG
Found at i:19074 original size:80 final size:79
Alignment explanation
Indices: 18865--19302 Score: 383
Period size: 80 Copynumber: 5.6 Consensus size: 79
18855 AAAACATCAA
* * * * * ** *
18865 AAGAGGTACTCTAACAGCCATTTTCACTTCTAAAACATCAAATTTTTTATCTCTAGGGATACTCC
1 AAGAGATACTCTAAC-CCCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCC
*
18930 AACCCCACTATCTTCG
65 AA-CCCACCATCTTCG
* * ** * * * *
18946 ATA-AG-GACTCTAACCCCATTTTTACTTCCAAAATGTCGAATGTTTCATCGCTGGGGATACTCC
1 A-AGAGATACTCTAACCCCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCC
19009 AACCTCACCATCTTCG
65 AACC-CACCATCTTCG
* *
19025 AAGAGAAACT-TCAACCTCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCC
1 AAGAGATACTCT-AACCCCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCC
*
19089 AACCCCACCTTCTTCG
65 AA-CCCACCATCTTCG
* * * * * * * *
19105 AAGGGATATTCCAACCCCGTTTTTACTTCTAAAACATTAAATTCTTCAT-TTTAAGGATACTCCA
1 AAGAGATACTCTAACCCCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCA
19169 ACACCACCATC-TCTG
66 AC-CCACCATCTTC-G
* * *
19184 AAGGGATACTCTAA-CCCGTTTTTACTTCCAAAACATTGAATTCTTCATTTCTA-GGATACTCCA
1 AAGAGATACTCTAACCCCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCA
*
19247 ACACCACCATCTTTG
66 AC-CCACCATCTTCG
* * * * * *
19262 AAGGGGTACTCCAACCCTGATTTT-C-ACCAAAA-ATTGAATTT
1 AAGAGATACTCTAACCCCGTTTTTACTTCCAAAACATTGAATTT
19303 CTATTTTTTG
Statistics
Matches: 300, Mismatches: 45, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
76 8 0.03
77 6 0.02
78 73 0.24
79 100 0.33
80 107 0.36
81 5 0.02
82 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (79 bp):
AAGAGATACTCTAACCCCGTTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCA
ACCCACCATCTTCG
Found at i:19095 original size:159 final size:157
Alignment explanation
Indices: 18885--19278 Score: 406
Period size: 159 Copynumber: 2.5 Consensus size: 157
18875 CTAACAGCCA
* * ** *
18885 TTTTCACTTCTAAAACATCAAATTTTTTATCTCTAGGGATACTCCAACCCCACTATCTTCGATAA
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACTATCTTCGA-AA
* ** * **
18950 GG-ACTCTAACCCCATTTTTACTTCCAAAATGTCGAATGT-TTCATCGCTGGGGATACTCCAAC-
65 GGAACTCCAACCCCATTTTTACTTCCAAAACATCAAAT-TCTTCAT-GCTAAGGATACTCCAACA
19012 CTCACCATCT-TCGAAGAGAAACT-TCAACCTCG
128 C-CACCATCTCT-GAAGAGAAACTCT-AACC-CG
*
19044 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACCT-TCTTCGAAG
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCA-CTATCTTCGAAA
* * * * **
19108 GGATATTCCAACCCCGTTTTTACTTCTAAAACATTAAATTCTTCATTTTAAGGATACTCCAACAC
65 GGA-ACTCCAACCCCATTTTTACTTCCAAAACATCAAATTCTTCATGCTAAGGATACTCCAACAC
* *
19173 CACCATCTCTGAAGGGATACTCTAACCCG
129 CACCATCTCTGAAGAGAAACTCTAACCCG
* * * * * *
19202 TTTTTACTTCCAAAACATTGAATTCTTCATTTCTA-GGATACTCCAACACCACCATCTTTGAAGG
1 TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACTATCTTCGAA-A
*
19266 GGTACTCCAACCC
65 GGAACTCCAACCC
19279 TGATTTTCAC
Statistics
Matches: 199, Mismatches: 27, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
156 1 0.01
157 31 0.16
158 41 0.21
159 89 0.45
160 37 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (157 bp):
TTTTTACTTCCAAAACATTGAATTTTTCATCTCTAGGGATACTCCAACCCCACTATCTTCGAAAG
GAACTCCAACCCCATTTTTACTTCCAAAACATCAAATTCTTCATGCTAAGGATACTCCAACACCA
CCATCTCTGAAGAGAAACTCTAACCCG
Found at i:19230 original size:78 final size:78
Alignment explanation
Indices: 19000--19278 Score: 357
Period size: 78 Copynumber: 3.5 Consensus size: 78
18990 TCATCGCTGG
* * *
19000 GGATACTCCAAC-CTCACCATCTTCGAAGAGAAACTTCAACCTCGTTTTTACTTCCAAAACATTG
1 GGATACTCCAACAC-CACCATCTTCGAAGGGATACTCCAACC-CGTTTTTACTTCCAAAACATTG
* * *
19064 AATTTTTCATCTCTAG
64 AATTCTTCAT-TTTAA
* * * * *
19080 GGATACTCCAACCCCACCTTCTTCGAAGGGATATTCCAACCCCGTTTTTACTTCTAAAACATTAA
1 GGATACTCCAACACCACCATCTTCGAAGGGATACTCCAA-CCCGTTTTTACTTCCAAAACATTGA
19145 ATTCTTCATTTTAA
65 ATTCTTCATTTTAA
*
19159 GGATACTCCAACACCACCATC-TCTGAAGGGATACTCTAACCCGTTTTTACTTCCAAAACATTGA
1 GGATACTCCAACACCACCATCTTC-GAAGGGATACTCCAACCCGTTTTTACTTCCAAAACATTGA
19223 ATTCTTCATTTCT-A
65 ATTCTTCATTT-TAA
* *
19237 GGATACTCCAACACCACCATCTTTGAAGGGGTACTCCAACCC
1 GGATACTCCAACACCACCATCTTCGAAGGGATACTCCAACCC
19279 TGATTTTCAC
Statistics
Matches: 175, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
78 74 0.42
79 37 0.21
80 61 0.35
81 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (78 bp):
GGATACTCCAACACCACCATCTTCGAAGGGATACTCCAACCCGTTTTTACTTCCAAAACATTGAA
TTCTTCATTTTAA
Found at i:22176 original size:13 final size:13
Alignment explanation
Indices: 22158--22193 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
22148 TTGACAAGAT
22158 TATAATATATAAA
1 TATAATATATAAA
22171 TATAATATA-AAA
1 TATAATATATAAA
22183 -ATAAT-TATAAA
1 TATAATATATAAA
22194 ATCACATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 2 0.09
11 8 0.36
12 3 0.14
13 9 0.41
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TATAATATATAAA
Found at i:22180 original size:11 final size:11
Alignment explanation
Indices: 22159--22211 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
22149 TGACAAGATT
22159 ATAATATATAAA
1 ATAATATA-AAA
22171 TATAATATAAAA
1 -ATAATATAAAA
22183 ATAAT-TATAAA
1 ATAATATA-AAA
* *
22194 ATCACATAAAA
1 ATAATATAAAA
22205 ATAATAT
1 ATAATAT
22212 TAATACAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
10 2 0.06
11 19 0.56
12 5 0.15
13 8 0.24
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:22205 original size:22 final size:24
Alignment explanation
Indices: 22159--22211 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 24
22149 TGACAAGATT
*
22159 ATAATATATAAATATAATATAAAA
1 ATAATATATAAATATAACATAAAA
*
22183 ATAAT-TATAAA-ATCACATAAAA
1 ATAATATATAAATATAACATAAAA
22205 ATAATAT
1 ATAATAT
22212 TAATACAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 14 0.54
23 7 0.27
24 5 0.19
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (24 bp):
ATAATATATAAATATAACATAAAA
Found at i:23754 original size:51 final size:52
Alignment explanation
Indices: 23617--23779 Score: 154
Period size: 51 Copynumber: 3.2 Consensus size: 52
23607 ACAATGGGGC
* * * * * * *
23617 TGGAGTATCCCCTGATTATGGAAAATCAATATTCTGAAAATAAAATCGGGGT
1 TGGAGTATCCCCTAATTATGAAAAATTAGTATTTTAAAAATAAAATCGAGGT
** *
23669 TGGAGTAT-CCCTAATTAT-AGAAAATTAGCGTTTTAAAAATTAAATCGAGGT
1 TGGAGTATCCCCTAATTATGA-AAAATTAGTATTTTAAAAATAAAATCGAGGT
* * *
23720 TGGAGTATCCCCT-ATTGTGAAAAATTGGTATTTTAGAAATAAAATC-AGGAT
1 TGGAGTATCCCCTAATTATGAAAAATTAGTATTTTAAAAATAAAATCGAGG-T
*
23771 TAGAGTATC
1 TGGAGTATC
23780 TCTTCGAAAA
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
50 3 0.03
51 74 0.82
52 13 0.14
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (52 bp):
TGGAGTATCCCCTAATTATGAAAAATTAGTATTTTAAAAATAAAATCGAGGT
Found at i:23904 original size:28 final size:27
Alignment explanation
Indices: 23863--23936 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
23853 AATATAAAGC
23863 CGGGGTTGGAGTATCCCATCG-GAAATAA
1 CGGGGTTGGAGTATCCC--CGAGAAATAA
*
23891 TGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGA-GAAATAA
*
23919 CAGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
23937 AATTATGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
28 39 0.95
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAGAAATAA
Found at i:24001 original size:51 final size:51
Alignment explanation
Indices: 23923--24088 Score: 215
Period size: 51 Copynumber: 3.3 Consensus size: 51
23913 AAATAACAGG
* *
23923 GTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCAGA
* * * * * * *
23974 GTTGGAATATCCCCGGTTGTGATAAATTGATGCTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCAGA
* * * *
24025 GTTGGAGTATCCTCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCAGG
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCAGA
24076 GTTGGAGTATCCC
1 GTTGGAGTATCCC
24089 TGAGATGAAG
Statistics
Matches: 94, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 94 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCAGA
Found at i:27040 original size:2 final size:2
Alignment explanation
Indices: 27033--27063 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
27023 TGTGGATGAA
*
27033 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27064 ACGAGTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:28559 original size:20 final size:20
Alignment explanation
Indices: 28513--28583 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
28503 TTCTATAATT
* *
28513 TGTATCGATACAACAAGTTAA
1 TGTATCGATAC-ATAAGTGAA
* *
28534 TATATCAATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
*
28554 TGTATCGATATATAAGTGAA
1 TGTATCGATACATAAGTGAA
28574 TGTATCGATA
1 TGTATCGATA
28584 TTGGACCTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
20 34 0.79
21 9 0.21
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:28715 original size:20 final size:20
Alignment explanation
Indices: 28692--28740 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
28682 CAAATGTATT
28692 GATACATTCTTCAATGTCTC
1 GATACATTCTTCAATGTCTC
28712 GATACATTCTTCAATGTCTC
1 GATACATTCTTCAATGTCTC
28732 GATACATTC
1 GATACATTC
28741 AGTTAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (20 bp):
GATACATTCTTCAATGTCTC
Found at i:33768 original size:13 final size:13
Alignment explanation
Indices: 33750--33775 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33740 TAATTTTTTG
33750 TGTATCGATACAT
1 TGTATCGATACAT
33763 TGTATCGATACAT
1 TGTATCGATACAT
33776 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:34524 original size:21 final size:21
Alignment explanation
Indices: 34483--34526 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34473 CTCCCCTTTA
* *
34483 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
34504 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
34525 TC
1 TC
34527 ATATTCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:36352 original size:13 final size:13
Alignment explanation
Indices: 36334--36372 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
36324 ATAATCACCC
*
36334 TGTATCGATACAG
1 TGTATCGATACAA
36347 TGTATCGATACAA
1 TGTATCGATACAA
36360 TGTATCGATACAA
1 TGTATCGATACAA
36373 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38463 original size:15 final size:15
Alignment explanation
Indices: 38443--38473 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38433 ATTTCGTTTG
*
38443 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
38458 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
38473 G
1 G
38474 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:40323 original size:21 final size:21
Alignment explanation
Indices: 40277--40321 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
40267 AAGTTTTCAT
40277 TTTTC-TTAGCTAACTCATTA
1 TTTTCATTAGCTAACTCATTA
*
40297 TTTTCATTAGCTAACTTCTTTA
1 TTTTCATTAGCTAAC-TCATTA
40319 TTT
1 TTT
40322 CAACTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCATTAGCTAACTCATTA
Found at i:42554 original size:13 final size:13
Alignment explanation
Indices: 42536--42561 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42526 TAATTTTTTG
42536 TGTATCGATACAT
1 TGTATCGATACAT
42549 TGTATCGATACAT
1 TGTATCGATACAT
42562 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:43963 original size:13 final size:13
Alignment explanation
Indices: 43945--43969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43935 AAGGTTTTAA
43945 TACAAAGACAAGG
1 TACAAAGACAAGG
43958 TACAAAGACAAG
1 TACAAAGACAAG
43970 TTGAGATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.20, T:0.08
Consensus pattern (13 bp):
TACAAAGACAAGG
Found at i:45533 original size:21 final size:21
Alignment explanation
Indices: 45482--45537 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
45472 ATGTAGGGTG
45482 GTTTGTATCGATACATTCACT
1 GTTTGTATCGATACATTCACT
* *
45503 -TATGTATCGATACATTTACT
1 GTTTGTATCGATACATTCACT
*
45523 GTTTATATCGATACA
1 GTTTGTATCGATACA
45538 AATTGTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (21 bp):
GTTTGTATCGATACATTCACT
Found at i:45941 original size:12 final size:12
Alignment explanation
Indices: 45909--45969 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
45899 CATGTAATGA
*
45909 ATGCATGCATAT
1 ATGCATGTATAT
*
45921 AT--ATATATAT
1 ATGCATGTATAT
*
45931 ATTCATGTATAT
1 ATGCATGTATAT
45943 ATGCATGAATATAT
1 ATGCATG--TATAT
*
45957 ATGCATGAATAT
1 ATGCATGTATAT
45969 A
1 A
45970 CATGCATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 8 0.20
12 20 0.50
14 12 0.30
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.39
Consensus pattern (12 bp):
ATGCATGTATAT
Found at i:45955 original size:14 final size:14
Alignment explanation
Indices: 45925--45976 Score: 72
Period size: 14 Copynumber: 3.9 Consensus size: 14
45915 GCATATATAT
*
45925 ATATATATTCATG-
1 ATATATATGCATGA
45938 -TATATATGCATGA
1 ATATATATGCATGA
45951 ATATATATGCATGA
1 ATATATATGCATGA
*
45965 ATATACATGCAT
1 ATATATATGCAT
45977 TAATGTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
12 11 0.31
14 24 0.69
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (14 bp):
ATATATATGCATGA
Found at i:48459 original size:155 final size:156
Alignment explanation
Indices: 48201--48491 Score: 417
Period size: 155 Copynumber: 1.9 Consensus size: 156
48191 AAGTATCCTT
* *
48201 GTAACTCTAAAGGACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGCACACCTTTAA
1 GTAACCCTAAAGGACTT-AAAATGATCATAAATGAGATGAACCTATCCTAAATGCACACCTTTAA
* * * *** *
48266 CATAAAAGCATCCTAATGATAACTTAGGACTTGGTTCT-AAAGAAATTACAAAAATACCCCTAAG
65 CATAAAAGCATCCTAATGACAACCTAAGACTCAATTCTAAAAGAAATTACAAAAATAACCCTAAG
48330 GTATACTTTCGACATAAAAGTATCTCG
130 GTATACTTTCGACATAAAAGTATCTCG
**
48357 GTAACCCTAAAGGACTT-AAATGCATCATAAATGAGATGAACCTATCCTAAATGCACACCTTTGG
1 GTAACCCTAAAGGACTTAAAATG-ATCATAAATGAGATGAACCTATCCTAAATGCACACCTTTAA
**
48421 CATAAAAGCATCAC-GGTGACAACCTAAGACTCAATTCTAAAAGAAATTACAAAAATAACCCTAA
65 CATAAAAGCATC-CTAATGACAACCTAAGACTCAATTCTAAAAGAAATTACAAAAATAACCCTAA
48485 GGTATAC
129 GGTATAC
48492 CTTCAATGTG
Statistics
Matches: 119, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
154 5 0.04
155 66 0.55
156 48 0.40
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (156 bp):
GTAACCCTAAAGGACTTAAAATGATCATAAATGAGATGAACCTATCCTAAATGCACACCTTTAAC
ATAAAAGCATCCTAATGACAACCTAAGACTCAATTCTAAAAGAAATTACAAAAATAACCCTAAGG
TATACTTTCGACATAAAAGTATCTCG
Found at i:48506 original size:156 final size:156
Alignment explanation
Indices: 48176--48510 Score: 435
Period size: 156 Copynumber: 2.1 Consensus size: 156
48166 TCCTTAGAGC
* * *
48176 ATACCTTCGATATGAAAGTATC-CTTGTAACTCTAAAGGACTTAAAAATGATCATAAATGGGATG
1 ATACCTTCGATATGAAAGTATCTCTGGTAACCCTAAAGGACTT-AAAATGATCATAAATGAGATG
* * * ***
48240 AACCTATCCTAAATGCACACCTTTAACATAAAAGCATCCTAATGATAACTTAGGACTTGGTTCTA
65 AACCTATCCTAAATGCACACCTTTAACATAAAAGCATCCTAATGACAACCTAAGACTCAATTCTA
*
48305 AAGAAATTACAAAAATACCCCTAAGGT
130 AAGAAATTACAAAAATAACCCTAAGGT
* * *
48332 ATACTTTCGACATAAAAGTATCTC-GGTAACCCTAAAGGACTT-AAATGCATCATAAATGAGATG
1 ATACCTTCGATATGAAAGTATCTCTGGTAACCCTAAAGGACTTAAAATG-ATCATAAATGAGATG
** **
48395 AACCTATCCTAAATGCACACCTTTGGCATAAAAGCATCAC-GGTGACAACCTAAGACTCAATTCT
65 AACCTATCCTAAATGCACACCTTTAACATAAAAGCATC-CTAATGACAACCTAAGACTCAATTCT
48459 AAAAGAAATTACAAAAATAACCCTAAGGT
129 -AAAGAAATTACAAAAATAACCCTAAGGT
* *
48488 ATACCTTCAATGTGAAAGTATCT
1 ATACCTTCGATATGAAAGTATCT
48511 TAGTAAACTT
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
154 5 0.03
155 66 0.43
156 81 0.53
157 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (156 bp):
ATACCTTCGATATGAAAGTATCTCTGGTAACCCTAAAGGACTTAAAATGATCATAAATGAGATGA
ACCTATCCTAAATGCACACCTTTAACATAAAAGCATCCTAATGACAACCTAAGACTCAATTCTAA
AGAAATTACAAAAATAACCCTAAGGT
Found at i:52693 original size:153 final size:153
Alignment explanation
Indices: 52408--52993 Score: 639
Period size: 154 Copynumber: 3.8 Consensus size: 153
52398 ATATAAATGC
* * * *
52408 AAAACTCATAAAATAAATT-AAATTTTCACAAACTAATTTAATATAAATTTAATAAAAATATTTG
1 AAAACTCATAAAATAAATTGAATTTTTCA-AAACTAATTTAATATGAATTAAATAATAATATTTG
* * * * *
52472 ATA-AATTTTAAAAATTTTAAACTAAGAAAAATCCAATTAGAGAAATTTACGGAGTA-AAAAACT
65 A-AGAATTTTAAAAATTATAAACTTAGAAAAATCCTACTAGAGAAATTTACGAAGTAGAAAAA-T
*
52535 CTGTATCTTAGTAACA-AAAAAATTTT
128 ATGTATCTT-GTAACAGAAAAAATTTT
* * * * *
52561 AAAACTCATGAAATAGATTGAATTTTTCAAAACTGATTTAATAT-AGCTTAAATAATAATATTTT
1 AAAACTCATAAAATAAATTGAATTTTTCAAAACTAATTTAATATGA-ATTAAATAATAATATTTG
* * * * *
52625 AAGAATTTTTAAAATTATAAAATTAGAAAAATCCTACTGGAGGAATTTACGAAATAGAAAAATAT
65 AAGAATTTTAAAAATTATAAACTTAGAAAAATCCTACTAGAGAAATTTACGAAGTAGAAAAATAT
* * *
52690 GTATCTTGATAATAGGAAAATTTTT
130 GTATCTTG-TAACAGAAAAAATTTT
* * * **
52715 AAAACTTATAAAATAAATTGAATTTTTTAAAACTAATTTAATATGATTTAAGCAATAATATTTGA
1 AAAACTCATAAAATAAATTGAATTTTTCAAAACTAATTTAATATGAATTAAATAATAATATTTGA
* * * *
52780 AGAATTTTAAAAATTATAAACTCAGAAAAATCCTACT-GAAGAAATTTATGGAGTAG-AAAATTT
66 AGAATTTTAAAAATTATAAACTTAGAAAAATCCTACTAG-AGAAATTTACGAAGTAGAAAAATAT
* *
52843 CATATCTCGGTAACAAGAAAAAATTTT
130 -GTATCT-TGTAAC-AGAAAAAATTTT
* * * * *
52870 AAAATTCATAAAATAAATTTAATTTTTCAAAACTAAATTAAAATGAATTAAA-AATAATATTTAA
1 AAAACTCATAAAATAAATTGAATTTTTCAAAACTAATTTAATATGAATTAAATAATAATATTTGA
* * * *
52934 AGAATTTTGAAAATTACAAACTTAAAAAAATCCTACCAGAGAAATTTACGAAGTAGAAAA
66 AGAATTTTAAAAATTATAAACTTAGAAAAATCCTACTAGAGAAATTTACGAAGTAGAAAA
52994 TTTCGTATTT
Statistics
Matches: 360, Mismatches: 60, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
152 3 0.01
153 109 0.30
154 188 0.52
155 60 0.17
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (153 bp):
AAAACTCATAAAATAAATTGAATTTTTCAAAACTAATTTAATATGAATTAAATAATAATATTTGA
AGAATTTTAAAAATTATAAACTTAGAAAAATCCTACTAGAGAAATTTACGAAGTAGAAAAATATG
TATCTTGTAACAGAAAAAATTTT
Found at i:53613 original size:20 final size:20
Alignment explanation
Indices: 53588--53630 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
53578 TTTTCACAAT
53588 TTGTATCGATACATTATTCA
1 TTGTATCGATACATTATTCA
*
53608 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTATTCA
53628 TTG
1 TTG
53631 CATCCATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (20 bp):
TTGTATCGATACATTATTCA
Found at i:55889 original size:51 final size:51
Alignment explanation
Indices: 55834--55949 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
55824 TTTTTATCAT
* * * *
55834 GGGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCACAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTACCACAATC
* ** *
55885 GGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTTCACAATT
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTACCACAATC
55936 GGGGATACTCCAAC
1 GGGGATACTCCAAC
55950 CTTGTTATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTACCACAATC
Found at i:55961 original size:31 final size:28
Alignment explanation
Indices: 55936--56006 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
55926 TTTCACAATT
*
55936 GGGGATACTCCAACCTTGTTATTTCATC
1 GGGGATACTCCAACCTCGTTATTTCATC
55964 GGGGATACTCCAACCTCGTTATTT--TC
1 GGGGATACTCCAACCTCGTTATTTCATC
55990 GAGGGGATACTCCAACC
1 --GGGGATACTCCAACC
56007 CCGGCTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.05
28 38 0.95
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (28 bp):
GGGGATACTCCAACCTCGTTATTTCATC
Found at i:56016 original size:107 final size:107
Alignment explanation
Indices: 55885--56159 Score: 363
Period size: 107 Copynumber: 2.6 Consensus size: 107
55875 TACCACAATC
* * * * *
55885 GGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
* *
55950 CTTGTTATTTCATCGGGGATACTCCAA-CCTCGTTATTTTCGA
66 CCTGTTATGTCATCGGGGATACTCCAATCC-CGTTATTTTCGA
* * * * * *
55992 GGGGATACTCCAACCCCGGCTTTATATCTAAAATATTGATTTTTCATAATCGGGGGTACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
* *
56057 CCTGTTATGTCATCGGGGATACTCTAATCCCGTTATTTTTGA
66 CCTGTTATGTCATCGGGGATACTCCAATCCCGTTATTTTCGA
* * * *
56099 GGGGATATTCCAACCTCGATTTTATTTCTAAAATACTAATTTTTCACAATCAGGGATACTC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAATACTAATTTTTCACAATCGGGGATACTC
56160 TAACTCCAAT
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
107 140 0.99
108 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
CCTGTTATGTCATCGGGGATACTCCAATCCCGTTATTTTCGA
Found at i:56234 original size:79 final size:77
Alignment explanation
Indices: 56151--56525 Score: 374
Period size: 79 Copynumber: 4.8 Consensus size: 77
56141 TTCACAATCA
* * * * *
56151 GGGATACTCTAACTCCAATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTT-TCATAATCGGGGATACTCCAACC
**
56216 CCATTATTTTCATG
65 CTGTTATTTTCA-G
*** * * ** * *
56230 GGGATACTCCAACCCCGGCCTTATTTCTAAAGCATTGATTTTCCATAATCGAGGATACTCTAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTT-CATAATCGGGGATACTCCAACC
*
56295 CTGTTATTTTTGAG
65 CTGTTA-TTTTCAG
* * **
56309 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTC-ATAATCGGGGATACTCCAACC
56374 CTGTTATTTTCGAG
65 CTGTTATTTTC-AG
* ** *
56388 GGGATACTCCAACCACGATTTTATTTTTAAAATACCGATTTTCTATAAT-GAGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTC-ATAATCG-GGGATACTCCAAC
* *
56452 CCTGTTATTTTTGAA
64 CCTGTTA-TTTTCAG
* * * *
56467 GGGATACTTCAACCCCAATTTTACTTCCAAAACACCGATTTTCCATAATCGAGGATACT
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTT-CATAATCGGGGATACT
56526 TCAGCCCCGT
Statistics
Matches: 242, Mismatches: 46, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
78 6 0.02
79 225 0.93
80 11 0.05
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (77 bp):
GGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTCATAATCGGGGATACTCCAACCC
TGTTATTTTCAG
Found at i:56340 original size:158 final size:157
Alignment explanation
Indices: 56150--56525 Score: 468
Period size: 158 Copynumber: 2.4 Consensus size: 157
56140 TTTCACAATC
* * *
56150 AGGGATACTCTAACTCCAATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAAC
1 AGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTT-TCATAATCGGGGATACTCCAAC
* * * **
56215 CCCATTATTTTC-ATGGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATTGATTTTCCATAAT
65 CCCATTATTTTCGA-GGGGATACTCCAACCACGACCTTATTTCTAAAACACCGATTTTCCATAAT
*
56279 CGA-GGATACTCTAACCCTGTTATTTTTGA
129 -GAGGGATACTCCAACCCTGTTATTTTTGA
* * * **
56308 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
1 AGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTC-ATAATCGGGGATACTCCAAC
** ** * * *
56373 CCTGTTATTTTCGAGGGGATACTCCAACCACGATTTTATTTTTAAAATACCGATTTTCTATAATG
65 CCCATTATTTTCGAGGGGATACTCCAACCACGACCTTATTTCTAAAACACCGATTTTCCATAATG
56438 AGGGATACTCCAACCCTGTTATTTTTGA
130 AGGGATACTCCAACCCTGTTATTTTTGA
* * * *
56466 AGGGATACTTCAACCCCAATTTTACTTCCAAAACACCGATTTTCCATAATCGAGGATACT
1 AGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTT-CATAATCGGGGATACT
56526 TCAGCCCCGT
Statistics
Matches: 184, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
157 4 0.02
158 178 0.97
159 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (157 bp):
AGGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTCATAATCGGGGATACTCCAACC
CCATTATTTTCGAGGGGATACTCCAACCACGACCTTATTTCTAAAACACCGATTTTCCATAATGA
GGGATACTCCAACCCTGTTATTTTTGA
Found at i:63391 original size:20 final size:20
Alignment explanation
Indices: 63366--63421 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
63356 ATTTGCCTGC
*
63366 ATGTATCGATACATTGTATA
1 ATGTATCGATACATTGAATA
*
63386 ATGTATCGATATATTGAATA
1 ATGTATCGATACATTGAATA
*
63406 ATGTATCAATACATTG
1 ATGTATCGATACATTG
63422 CCTTGGCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:66270 original size:60 final size:62
Alignment explanation
Indices: 66156--66284 Score: 208
Period size: 61 Copynumber: 2.1 Consensus size: 62
66146 GCCCTTCCAA
* **
66156 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACC-TTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
*
66217 TCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCTCACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
66278 TCCTCAA
1 TCCTCAA
66285 CTCCTTCAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 22 0.35
61 41 0.65
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (62 bp):
TCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:66373 original size:108 final size:104
Alignment explanation
Indices: 66184--66390 Score: 324
Period size: 108 Copynumber: 2.0 Consensus size: 104
66174 CCTTTTTCTT
* *
66184 TTCAAAGCCCACATGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAA
1 TTCAAAGCCCACACGAGTTGGTGGCACCTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAA
*
66249 AGCTCACACAAGTTGGTGGCACCTTTTAGTCCTCAACTCC
66 AGCCCACACAAGTTGGTGGCACC-TTTAGTCCTCAACTCC
* * *
66289 TTCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCATTTTTTCTTTT
1 TTCAAAGCCCACACGAGTTGGTGGCA-CCTCTAGTCCTCAAAGAGCAGGACGC--CTTTTCCTTT
66354 TAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCA
63 TAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCA
66391 GAGAGCAGGA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 25 0.27
106 24 0.26
107 11 0.12
108 33 0.35
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (104 bp):
TTCAAAGCCCACACGAGTTGGTGGCACCTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAA
AGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAACTCC
Found at i:66428 original size:60 final size:61
Alignment explanation
Indices: 66292--66956 Score: 837
Period size: 60 Copynumber: 10.9 Consensus size: 61
66282 CAACTCCTTC
* * * * *
66292 AAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCATTTTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC--CTTTTCCTTTT
* *
66355 AAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAGAGAGCAGGATGCCTTTTCCTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
66415 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* * * *
66476 AAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTCTCC-TTC
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* ** * *
66536 AAAGCCCACATGC-A-TTGGTTGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTT
1 AAAGCCCACA--CAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCC--TTTTCCTTTT
* * * * *
66599 AAAGCTCACACAAGTTGGTGGTA-CCTTTAGTCCTCAAAGAGTAAGACGCCTATTCCTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* * *
66659 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTCC-TTC
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* * * *
66719 AAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCC--TTTTCCTTTT
*
66782 AAAGCTCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* * * *
66842 GAAGCCCATATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACG-CTTTCTCC-TTC
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTT-TCCTTTT
* * *
66902 AAAGCCCACACAAGTTGGTGGCA-CCTCCTAGTCCTCACAGAGTAGGACGCACTTT
1 AAAGCCCACACAAGTTGGTGGCACCCT-TTAGTCCTCAAAGAGCAGGACGC-CTTT
66957 ATTTTCCTCT
Statistics
Matches: 529, Mismatches: 56, Indels: 35
0.85 0.09 0.06
Matches are distributed among these distances:
59 3 0.01
60 229 0.43
61 149 0.28
62 85 0.16
63 63 0.12
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (61 bp):
AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
Found at i:66685 original size:183 final size:183
Alignment explanation
Indices: 66292--66948 Score: 943
Period size: 183 Copynumber: 3.6 Consensus size: 183
66282 CAACTCCTTC
* * * * * * *
66292 AAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCATTTTTTCTTTTTAA
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC--CTTCTC-CTTCAA
* * *
66357 AGCCCACA-CAAGTTGGTGGCA-CCTTTAGTCCTCAGAGAGCAGGATGCC--TTTTCCTTTTAAA
63 AGCCCACAGC-AGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAA
*
66418 GCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
127 GCTCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* *
66476 AAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGC
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGC
* *
66541 CCACATGCA-TTGGTTGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCT
66 CCACA-GCAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCT
* * * *
66605 CACACAAGTTGGTGGTACCTTTAGTCCTCAAAGAGTAAGACGCCTATTCCTTTT
130 CACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
*
66659 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTCAAAGC
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGC
66724 CCACA-CGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCT
66 CCACAGC-AGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCT
66788 CACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
130 CACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
* * * *
66842 GAAGCCCATATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCTTTCTCCTTCAAAGC
1 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGC
* *
66907 CCACA-CAAGTTGGTGGCA-CCTCCTAGTCCTCACAGAGTAGGA
66 CCACAGC-AGTTGGTGGCACCCT-CTAGTCCTCAAAGAGCAGGA
66949 CGCACTTTAT
Statistics
Matches: 431, Mismatches: 34, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
181 21 0.05
182 33 0.08
183 300 0.70
184 77 0.18
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (183 bp):
AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGC
CCACAGCAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCTC
ACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
Found at i:66872 original size:244 final size:240
Alignment explanation
Indices: 66285--66943 Score: 869
Period size: 244 Copynumber: 2.7 Consensus size: 240
66275 TAGTCCTCAA
* *
66285 CTCCTTCAAAGCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCATTTTTTC
1 CTCCTTCAAAG-CCACACAAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGC--CTTTTC
* *
66350 TTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAGAGAGCAGGATGCCTTTTCCTTTT
63 TTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTT
* * *
66415 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAG
127 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTCAAAG
*
66480 CCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
192 CCCACACAAATTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTT
* * *
66529 CTCCTTCAAAGCC-CACATGCATTGGTTGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTT
1 CTCCTTCAAAGCCACACAAG--TTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCC--TTTT
* * * *
66593 CTTTTTAAAGCTCACACAAGTTGGTGGTACCTTTAGTCCTCAAAGAGTAAGACGCCTATTCCTTT
62 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCT-TTCCTTT
66658 TAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTCC-TTCAAA
126 TAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTCAAA
* *
66722 GCCCACACGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTT
191 GCCCACACAAATTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCC--TT
* * * * * *
66774 TTCTTTTTAAAGCTCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCC
1 CTC-CTTCAAAGC-CACACAAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTCT
* * * * *
66838 TTTTGAAGCCCATATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACG-CTTTCTCCTTC
64 TTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTC-CTTTT
* *
66902 AAAGCCCACACAAGTTGGTGGCA-CCTCCTAGTCCTCACAGAG
127 AAAGCCCACACAAGTTGGTGGCACCCT-TTAGTCCTCAAAGAG
66944 TAGGACGCAC
Statistics
Matches: 365, Mismatches: 37, Indels: 27
0.85 0.09 0.06
Matches are distributed among these distances:
242 10 0.03
243 121 0.33
244 185 0.51
245 28 0.08
246 15 0.04
247 1 0.00
248 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (240 bp):
CTCCTTCAAAGCCACACAAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTTTTCTTT
TTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAG
CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTCAAAGCCCA
CACAAATTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCCTT
Found at i:67017 original size:36 final size:36
Alignment explanation
Indices: 66966--67047 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
66956 TATTTTCCTC
* *
66966 TTCCTCTTTTATCCTCATAGAGCGGGACACACT-TCAT
1 TTCCT-TTTTATCCTCAAAGAGCAGGACACACTCT-AT
* *
67003 TTCCTTTTTGTCCTCAAAGAGCAGGACGCACTCTAT
1 TTCCTTTTTATCCTCAAAGAGCAGGACACACTCTAT
*
67039 TTTCTTTTT
1 TTCCTTTTT
67048 TCTCCATTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 33 0.85
37 6 0.15
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (36 bp):
TTCCTTTTTATCCTCAAAGAGCAGGACACACTCTAT
Found at i:67112 original size:46 final size:46
Alignment explanation
Indices: 67008--67163 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
66998 TTCATTTCCT
* *
67008 TTTTGTCCTCAAAGAGCAGGACGCACTCTATTTTCTT-TTTTCTCC
1 TTTTGTCCTCAAAGAGCAGGACGCACTCCATTTCCTTCTTTTCTCC
* * * * ** *
67053 -ATTGTCTTCAAAGAGCAGGTCACGTTCCATTCCCTTCTTTTCTCC
1 TTTTGTCCTCAAAGAGCAGGACGCACTCCATTTCCTTCTTTTCTCC
* * *
67098 TTTTGTCCTCAAAGAGCAAGACGCACTGCATTTCTTTCTTTTC-CC
1 TTTTGTCCTCAAAGAGCAGGACGCACTCCATTTCCTTCTTTTCTCC
*
67143 TTTTGTCCTCAAGGAGCAGGA
1 TTTTGTCCTCAAAGAGCAGGA
67164 TGCATTTTGT
Statistics
Matches: 88, Mismatches: 21, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
44 27 0.31
45 29 0.33
46 32 0.36
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (46 bp):
TTTTGTCCTCAAAGAGCAGGACGCACTCCATTTCCTTCTTTTCTCC
Found at i:67927 original size:13 final size:13
Alignment explanation
Indices: 67911--67940 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
67901 ATACATTGTT
*
67911 CATTGTATCGATA
1 CATTATATCGATA
67924 CATTATATCGATA
1 CATTATATCGATA
67937 CATT
1 CATT
67941 CTGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (13 bp):
CATTATATCGATA
Found at i:68015 original size:13 final size:13
Alignment explanation
Indices: 67993--68022 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
67983 ATACAGTGCT
67993 CATTGCATCGATA
1 CATTGCATCGATA
*
68006 CATTGTATCGATA
1 CATTGCATCGATA
68019 CATT
1 CATT
68023 ACTCGTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (13 bp):
CATTGCATCGATA
Found at i:68058 original size:20 final size:20
Alignment explanation
Indices: 68033--68074 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
68023 ACTCGTTGTA
68033 TTGACCACTTCGAGCCATTT
1 TTGACCACTTCGAGCCATTT
68053 TTGACCACTTCGAGCCATTT
1 TTGACCACTTCGAGCCATTT
68073 TT
1 TT
68075 TGGCTTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (20 bp):
TTGACCACTTCGAGCCATTT
Found at i:70374 original size:51 final size:51
Alignment explanation
Indices: 70319--70434 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
70309 TTTTTCATCA
* * *
70319 TGGGGATACTCCAAC-TCTGATTTTA-TTTCTAAAGCATCGATTTACCGCAAT
1 TGGGGATACTCCAACTTC-GATTTTATTTTC-AAAACATCAATTTACCACAAT
* **
70370 TGGGGATACTCCAACTTCGGTTTTATTTTCAAAACATCAATTTTTCACAAT
1 TGGGGATACTCCAACTTCGATTTTATTTTCAAAACATCAATTTACCACAAT
70421 TGGGGATACTCCAA
1 TGGGGATACTCCAA
70435 TCCCGTTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
51 51 0.89
52 6 0.11
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (51 bp):
TGGGGATACTCCAACTTCGATTTTATTTTCAAAACATCAATTTACCACAAT
Found at i:70492 original size:28 final size:28
Alignment explanation
Indices: 70422--70494 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
70412 TTTCACAATT
* *
70422 GGGGATACTCCAATCCCGTTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCATA
* ** *
70450 GGAGATACTGTAACCCCGTTATTT-TTGA
1 GGGGATACTCCAACCCCGTTATTTCAT-A
70478 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
70495 AGCTTTATAT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCATA
Found at i:70502 original size:107 final size:105
Alignment explanation
Indices: 70371--70649 Score: 276
Period size: 107 Copynumber: 2.6 Consensus size: 105
70361 TACCGCAATT
** * *
70371 GGGGATACTCCAACTTCGGTTTTATTTTCAAAACATCAATTTTTCACAATTGGGGATACTCCAAT
1 GGGGATACTCCAACCCCAGTTTTA-TTTCAAAA-ATCAATTTTTCACAATCGGGGATACTCCAA-
* ** * *
70436 CC-CGTTATTTCATCG-GAGATACTGTAACCCCGTTATTTTTGA
63 CCTCGTTATGTCATCGAG-GATACTCCAACCCCATTATTTTCGA
* * * *
70478 GGGGATACTCCAACCCCAGCTTTATATCAAAAAT-ATTGATTTTTCATAATCGGGGGTACTCCAA
1 GGGGATACTCCAACCCCAGTTTTATTTCAAAAATCA---ATTTTTCACAATCGGGGATACTCCAA
* * *
70542 CCTCGTTATGTCATCGAGGATATTCCAATCTCATTATTTTCGA
63 CCTCGTTATGTCATCGAGGATACTCCAACCCCATTATTTTCGA
* * * *
70585 GGGGATACACCAACCCCAATTTTATTTCTAAAATACTAATTTTTCACAATCGGGGATACTTCAAC
1 GGGGATACTCCAACCCCAGTTTTATTTCAAAAAT-C-AATTTTTCACAATCGGGGATACTCCAAC
70650 TCCGATTTTA
Statistics
Matches: 140, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
104 1 0.01
105 2 0.01
106 9 0.06
107 126 0.90
108 1 0.01
110 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (105 bp):
GGGGATACTCCAACCCCAGTTTTATTTCAAAAATCAATTTTTCACAATCGGGGATACTCCAACCT
CGTTATGTCATCGAGGATACTCCAACCCCATTATTTTCGA
Found at i:70658 original size:51 final size:51
Alignment explanation
Indices: 70585--70702 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 51
70575 TTATTTTCGA
* * * *
70585 GGGGATACACCAACCCCAATTTTA-TTTCTAAAATACTAATTTTTCACAATC
1 GGGGATACTCCAACCCCAATTTTATTTTC-AAAACACCAATTTCTCACAATC
* * *
70636 GGGGATACTTCAACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATC
1 GGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTCTCACAATC
70687 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
70703 TGTTATTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 53 0.93
52 4 0.07
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTCTCACAATC
Found at i:70720 original size:79 final size:75
Alignment explanation
Indices: 70635--71017 Score: 335
Period size: 79 Copynumber: 4.9 Consensus size: 75
70625 TTTTCACAAT
* * *
70635 CGGGGATACTTCAACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATCGGGGATACTCCAA
1 CGGGGATACTTCAAC-CCGATTTTATTTTCAAAACATCGATTT-TCATAATCGGGGATACTCCAA
*
70700 CCCTGTTATTTTTA
64 CCCTATTA--TTTA
* ** * *
70714 CGGGGATAC-TCTAACCCCTACCTTA-TTTCTAAAGCATCGATTTTTCACAATCGGGGATACTCC
1 CGGGGATACTTC-AA-CCCGATTTTATTTTC-AAAACATCGA-TTTTCATAATCGGGGATACTCC
70777 AACCCTATTATTTTCA
62 AACCCTATTA-TTT-A
* * * * *
70793 TGGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTCTATAATC-AGGATACTCCAA
1 CGGGGATACTTCAACCC-GATTTTATTTTCAAAACATCGATTTTC-ATAATCGGGGATACTCCAA
*
70857 CCCTATTATTTC
64 CCCTATTATTTA
* * *
70869 CGAGAGGATAC-TCAAACCTCGATTTTATTTTTAAAATATCGATTTTCTATAATCAGGGATACTC
1 CG-G-GGATACTTC-AACC-CGATTTTATTTTCAAAACATCGATTTTC-ATAATCGGGGATACTC
* *
70933 CAACCCTGTTATTTC
61 CAACCCTATTATTTA
* *
70948 CGAAGGGATACTTCAACCCCAATTTT-TCTTTCAAAACATCGATTTTCCATAATTGGGGATACTC
1 CG--GGGATACTTCAA-CCCGATTTTAT-TTTCAAAACATCGATTTT-CATAATCGGGGATACTC
71012 CAACCC
61 CAACCC
71018 CGTGGTTATC
Statistics
Matches: 254, Mismatches: 31, Indels: 38
0.79 0.10 0.12
Matches are distributed among these distances:
76 1 0.00
77 5 0.02
78 78 0.31
79 154 0.61
80 16 0.06
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (75 bp):
CGGGGATACTTCAACCCGATTTTATTTTCAAAACATCGATTTTCATAATCGGGGATACTCCAACC
CTATTATTTA
Found at i:70928 original size:157 final size:155
Alignment explanation
Indices: 70636--71017 Score: 414
Period size: 157 Copynumber: 2.4 Consensus size: 155
70626 TTTCACAATC
*
70636 GGGGATACTTCAACTCCGATTTTATTTTCAAAACACCAA-TTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTTCAAC-CCGATTTTATTTTCAAAACACCAATTTTCT-ATAATC-GGGATACTCCAA
* * * *
70700 CCCTGTTATTTTTACGGGGATACTCTAACCCCTACCTTATTTCTAAAGCATCGATTTTTCACAAT
63 CCCTATTA-TTTTACGGGGATACTCAAACCCCGACCTTATTTCTAAAACATCGATTTTTCACAAT
* *
70765 CGGGGATACTCCAACCCTATTATTTTC-A
127 CAGGGATACTCCAACCCTATTATTTCCGA
* *
70793 TGGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGATACTCCAAC
1 -GGGGATACTTCAACCC-GATTTTATTTTCAAAACACCAATTTTCTATAATCGGGATACTCCAAC
* * ** * * *
70858 CCTATTA-TTTCCGAGAGGATACTCAAACCTCGATTTTATTTTTAAAATATCGA-TTTTCTATAA
64 CCTATTATTTTACG-G-GGATACTCAAACCCCGACCTTATTTCTAAAACATCGATTTTTC-ACAA
*
70921 TCAGGGATACTCCAACCCTGTTATTTCCGA
126 TCAGGGATACTCCAACCCTATTATTTCCGA
* * * * * *
70951 AGGGATACTTCAACCCCAATTTT-TCTTTCAAAACATCGATTTTCCATAATTGGGGATACTCCAA
1 GGGGATACTTCAA-CCCGATTTTAT-TTTCAAAACACCAATTTTCTATAA-TCGGGATACTCCAA
71015 CCC
63 CCC
71018 CGTGGTTATC
Statistics
Matches: 190, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
155 5 0.03
156 7 0.04
157 114 0.60
158 59 0.31
159 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (155 bp):
GGGGATACTTCAACCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGATACTCCAACCC
TATTATTTTACGGGGATACTCAAACCCCGACCTTATTTCTAAAACATCGATTTTTCACAATCAGG
GATACTCCAACCCTATTATTTCCGA
Found at i:77252 original size:60 final size:60
Alignment explanation
Indices: 77143--77887 Score: 819
Period size: 60 Copynumber: 12.3 Consensus size: 60
77133 TAGCCCTTCC
* * *
77143 AGTCTTCAAAGAGCAGGACGCCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGATG-CCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT
* * * * *
77204 AGTCCTCAAAAAGTATGATGCCTTTTCCTTTTAAAGCTCACATAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTT
* * * *
77265 AGTCCTCAAAGAGCA-G--GCCTTCTCC-TTCAAAGCCCACACGAGTTGGTGGCACCCTCT
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
*
77322 AGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGATGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
77384 AGTCTTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * * **
77445 AGTCCTCAAAGAGCAGGACGCCTTCTCC-TTCAAAGCCCACA-AGCGTTGGTGGCATCCTCC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACA-AGTTGGTGGCA-CCTTT
*
77505 AGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGATGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * ** * *
77567 AGTCCTCAAA-ACGTAGGACGCCTTTTCCTTTTAAAGCCCATGCAAGTTGGTAGCACTTTTT
1 AGTCCTCAAAGA-GCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTT
* * * * * * *
77628 AGTCCTCAAATAGCATGACGCCTTCTCC-TTCAAAGCCCACACGAGTTGGTGGCACCTTCA
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-T
* * * *
77688 AGTCCTTAAAGAGTAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTCT
1 AGTCCTCAAAGAGCAGGATGCC--TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
77750 AGCCCTCAAAGAGCAGGACGGCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* ** *
77811 AGTCCTCAAAGAGCAGGATGCCTTTTCC-TTCAAAGTGCACACAAGTTGGTGGCACCTCCT
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT-TT
77871 AGTCCTCAAA-AGCAGGA
1 AGTCCTCAAAGAGCAGGA
77888 CGCACTTTGT
Statistics
Matches: 574, Mismatches: 86, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
57 39 0.07
58 11 0.02
59 13 0.02
60 241 0.42
61 121 0.21
62 75 0.13
63 73 0.13
64 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:77547 original size:183 final size:182
Alignment explanation
Indices: 77140--77887 Score: 1060
Period size: 183 Copynumber: 4.1 Consensus size: 182
77130 TTTTAGCCCT
* * * * *
77140 TCCAGTCTTCAAAGAGCAGGACGCC-CTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
1 TCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * * * * * *
77204 AGTCCTCAAAAAGTATGATGCCTTTTCCTTTTAAAGCTCACATAAGTTGGTGGCACCTTTTAGTC
66 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGTC
*
77269 CTCAAAGAGCA-G--GCCTTCTCCTTCAAAGCCCACACGAGTTGGTGGCACCC
131 CTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACAAGAGTTGGTGGCA-CC
*
77319 TCTAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 TCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
77384 AGTCTTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGTC
66 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGTC
*
77449 CTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACAAGCGTTGGTGGCATCC
131 CTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACAAGAGTTGGTGGCA-CC
77502 TCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 TCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * **
77567 AGTCCTCAAA-ACGTAGGACGCCTTTTCCTTTTAAAGCCCATGCAAGTTGGTAGCACTTTTTAGT
66 AGTCCTCAAAGA-GCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGT
* * *
77631 CCTCAAATAGCATGACGCCTTCTCCTTCAAAGCCCACACGAGTTGGTGGCACC
130 CCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACAAGAGTTGGTGGCACC
* * * *
77684 TTCAAGTCCTTAAAGAGTAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTC
1 -TCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* *
77749 TAGCCCTCAAAGAGCAGGACGGCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGT
65 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGT
* * **
77814 CCTCAAAGAGCAGGATGCCTTTTCCTTCAAAGTGCACACA-AGTTGGTGGCACC
130 CCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACA-AGAGTTGGTGGCACC
77867 TCCTAGTCCTCAAA-AGCAGGA
1 TCC-AGTCCTCAAAGAGCAGGA
77888 CGCACTTTGT
Statistics
Matches: 509, Mismatches: 51, Indels: 15
0.89 0.09 0.03
Matches are distributed among these distances:
179 22 0.04
180 104 0.20
181 1 0.00
182 11 0.02
183 370 0.73
184 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (182 bp):
TCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTTTAGTC
CTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACAAGAGTTGGTGGCACC
Found at i:78037 original size:89 final size:90
Alignment explanation
Indices: 77872--78112 Score: 287
Period size: 89 Copynumber: 2.7 Consensus size: 90
77862 GCACCTCCTA
* * * * * *
77872 GTCCTCAAAAGCAGGACGCACTTTGTTTT-CTTCTTCCTCTTTTATCCTCAAAGAGTATGACACA
1 GTCCTCAAAAGCAGGACGCACTCTATTTTCCTTCTTTCTCCTTTGTCCTCAAAGAGTAGGACACA
*
77936 CTTCATTTCCTTCTTTTC-CTTTTT
66 CTTCATTCCCTTCTTTTCTCTTTTT
*
77960 GTCCTCAAAGAGTAGGACGCACTCTATTTTCCTT-TTTCTCCTTTGTCCTCAAAGAGTAGGACAC
1 GTCCTCAAA-AGCAGGACGCACTCTATTTTCCTTCTTTCTCCTTTGTCCTCAAAGAGTAGGACAC
*
78024 -GTTCCATTCCCTTCTTTTCTCTTTTT
65 ACTT-CATTCCCTTCTTTTCTCTTTTT
* * *
78050 GTCCTCAAATAGCAGAACGCACTGTA-TTTCCTTCTTT-TCCCTTTTGTCCTCAAAGAGAAGGAC
1 GTCCTCAAA-AGCAGGACGCACTCTATTTTCCTTCTTTCT-CC-TTTGTCCTCAAAGAGTAGGAC
78113 CCATTTTGTT
Statistics
Matches: 132, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
88 11 0.08
89 65 0.49
90 36 0.27
91 20 0.15
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.39
Consensus pattern (90 bp):
GTCCTCAAAAGCAGGACGCACTCTATTTTCCTTCTTTCTCCTTTGTCCTCAAAGAGTAGGACACA
CTTCATTCCCTTCTTTTCTCTTTTT
Found at i:78943 original size:20 final size:20
Alignment explanation
Indices: 78920--79024 Score: 109
Period size: 20 Copynumber: 5.6 Consensus size: 20
78910 TTTTGTATTA
78920 TATCGATACATTGCTCATTG
1 TATCGATACATTGCTCATTG
78940 TATCGATACATTGCTCATTG
1 TATCGATACATTGCTCATTG
78960 TATCGAT--A-----CATTG
1 TATCGATACATTGCTCATTG
78973 TATCGATACATTGCTCATTG
1 TATCGATACATTGCTCATTG
* * * *
78993 TATTGATATATT-TTGCAATG
1 TATCGATACATTGCT-CATTG
79013 TATCGATACATT
1 TATCGATACATT
79025 CAGGCATTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 16
0.76 0.06 0.17
Matches are distributed among these distances:
13 12 0.17
15 1 0.01
18 1 0.01
19 1 0.01
20 56 0.79
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (20 bp):
TATCGATACATTGCTCATTG
Found at i:78971 original size:13 final size:13
Alignment explanation
Indices: 78955--78985 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
78945 ATACATTGCT
78955 CATTGTATCGATA
1 CATTGTATCGATA
78968 CATTGTATCGATA
1 CATTGTATCGATA
78981 CATTG
1 CATTG
78986 CTCATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:78977 original size:33 final size:33
Alignment explanation
Indices: 78935--79000 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
78925 ATACATTGCT
78935 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
*
78968 CATTGTATCGATACATTGCTCATTGTATTGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
79001 TATTTTGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:79015 original size:53 final size:53
Alignment explanation
Indices: 78920--79024 Score: 158
Period size: 53 Copynumber: 2.0 Consensus size: 53
78910 TTTTGTATTA
*
78920 TATCGATACATTGCTCATTGTATCGATACATTGCTCATTGTATCGATACATTG
1 TATCGATACATTGCTCATTGTATCGATACATTGCTCAATGTATCGATACATTG
* * *
78973 TATCGATACATTGCTCATTGTATTGATATATT-TTGCAATGTATCGATACATT
1 TATCGATACATTGCTCATTGTATCGATACATTGCT-CAATGTATCGATACATT
79025 CAGGCATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
52 1 0.02
53 46 0.98
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (53 bp):
TATCGATACATTGCTCATTGTATCGATACATTGCTCAATGTATCGATACATTG
Found at i:81423 original size:51 final size:51
Alignment explanation
Indices: 81323--81435 Score: 122
Period size: 51 Copynumber: 2.2 Consensus size: 51
81313 TTTTTCATCA
* *
81323 CGGGGATACTCCAACTCCAATTTTATTTCTAAAGCATCGATTTACCACAAT
1 CGGGGATACTCCAACTCCAATTTTATTTCTAAAACATCAATTTACCACAAT
** **
81374 CGGGGATACTCCAACTCCTGTTTTATTT-TCAAAACA-CTAATTTTTCACAAT
1 CGGGGATACTCCAACTCCAATTTTATTTCT-AAAACATC-AATTTACCACAAT
**
81425 TAGGGATACTC
1 CGGGGATACTC
81436 AAACCCCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
50 2 0.04
51 50 0.96
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (51 bp):
CGGGGATACTCCAACTCCAATTTTATTTCTAAAACATCAATTTACCACAAT
Found at i:81487 original size:28 final size:28
Alignment explanation
Indices: 81426--81495 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
81416 TTTCACAATT
*
81426 AGGGATACTCAAACCCCATTATTTCTCG
1 AGGGATACTCCAACCCCATTATTTCTCG
**
81454 A-GGATACTCCAACCCTGTTATTT-TCG
1 AGGGATACTCCAACCCCATTATTTCTCG
81480 AAGGGATACTCCAACC
1 -AGGGATACTCCAACC
81496 TCGGTTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.08
27 20 0.54
28 14 0.38
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
AGGGATACTCCAACCCCATTATTTCTCG
Found at i:81600 original size:107 final size:105
Alignment explanation
Indices: 81375--81652 Score: 369
Period size: 107 Copynumber: 2.6 Consensus size: 105
81365 TACCACAATC
* * ** *
81375 GGGGATACTCCAA-CTCCTGTTTTATTTTCAAAACACTAATTTTTCACAATTAGGGATACTCAAA
1 GGGGATACTCCAACCT-CGGTTTTATTTT-AAAATACTAATTTTTCACAATCGGGGATACTCCAA
*
81439 CCCCATTATTTCTCGAGGATACTCCAACCCTGTTATTTTCGA
64 CCCCATTATGTCTCGAGGATACTCCAACCCTGTTATTTTCGA
* * * *
81481 AGGGATACTCCAACCTCGGTTTTATATTTAAAATATTAATTTTTCATAATCGGGGGTACTCCAAC
1 GGGGATACTCCAACCTCGGTTTTAT-TTTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
* *
81546 CCCATTATGTCATCGTGGATACTCCAATCCTGTTATTTTCGA
65 CCCATTATGTC-TCGAGGATACTCCAACCCTGTTATTTTCGA
* * *
81588 GGGGATATTCCAACCCCGATTTTATTTCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCTCGGTTTTATTT-TAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
81653 TCCGATTTTA
Statistics
Matches: 149, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
106 61 0.41
107 88 0.59
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (105 bp):
GGGGATACTCCAACCTCGGTTTTATTTTAAAATACTAATTTTTCACAATCGGGGATACTCCAACC
CCATTATGTCTCGAGGATACTCCAACCCTGTTATTTTCGA
Found at i:81658 original size:51 final size:51
Alignment explanation
Indices: 81588--81707 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
81578 TTATTTTCGA
* * * *
81588 GGGGATATTCCAACCCCGATTTTATTTCTAAAATACTAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTCTCACAATC
* *
81639 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTCTCACAATT
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTCTCACAATC
81690 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
81708 TTATTTTCAT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTCTCACAATC
Found at i:81722 original size:79 final size:78
Alignment explanation
Indices: 81639--82023 Score: 400
Period size: 79 Copynumber: 4.9 Consensus size: 78
81629 TTTCACAATC
* * * *
81639 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTCTCACAATTGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTT-TCATAATCGGGGATACTCCAAC
81704 CCCGTTATTTTC-A
65 CCCGTTATTTTCGA
* *** * * *
81717 TGGGGATACTCTAACCCCGGCCTTATTTCTAAAGCA-TCGATTTTTCACAATCGGGGATACTCCA
1 -GGGGATACTCCAACCCCGATTTTATTTCCAAAACACT-GA-TTTTCATAATCGGGGATACTCCA
81781 ACCCCGTTATTTTCGA
63 ACCCCGTTATTTTCGA
* * ** **
81797 GGAGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTC-ATAATCGGGGATACTCCAAC
*
81862 CCTGTTATTTTCGA
65 CCCGTTATTTTCGA
* * *** *
81876 AGGGATACTCCAACCCCGATTTTACTTT-TAAAATTTTGATTTTCTATAATCAGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTA-TTTCCAAAACACTGATTTTC-ATAATCGGGGATACTCCAA
**
81940 CCCTATTATTTTCGA
64 CCCCGTTATTTTCGA
* * * *
81955 AGGGATACTTCAACCCC-AATTTACTTCCAAAACACTGATTTTCCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTT-CATAATCGGGGATACTCCAAC
82019 CCCGT
65 CCCGT
82024 GGTTATCTCC
Statistics
Matches: 255, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
77 2 0.01
78 44 0.17
79 202 0.79
80 7 0.03
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCATAATCGGGGATACTCCAACC
CCGTTATTTTCGA
Found at i:81805 original size:158 final size:156
Alignment explanation
Indices: 81640--82023 Score: 443
Period size: 158 Copynumber: 2.4 Consensus size: 156
81630 TTCACAATCG
*
81640 GGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTCTCACAATTGGGGATACTCCAACC
1 GGGATACTCCAAC-CCGATTTTATTTCCAAAACACTAATTT-TCATAATTGGGGATACTCCAACC
* * * *
81705 CCGTTATTTTC-ATGGGGATACTCTAACCCCGGCCTTA-TTTCTAAAGCATCGATTTT-TCACAA
64 CCGTTATTTTCGA-AGGGATACTCCAACCCCGACCTTACTTT-TAAAACATCGATTTTCT-ACAA
* *
81767 TCGGGGATACTCCAACCCCGTTATTTTCG-A
126 TCAGGGATACTCCAACCCCATTATTTTCGAA
* * *
81797 GGAGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
1 GG-GATACTCCAA-CCCGATTTTATTTCCAAAACACTAATTTTC-ATAATTGGGGATACTCCAAC
* ** ** * *
81862 CCTGTTATTTTCGAAGGGATACTCCAACCCCGATTTTACTTTTAAAATTTTGATTTTCTATAATC
63 CCCGTTATTTTCGAAGGGATACTCCAACCCCGACCTTACTTTTAAAACATCGATTTTCTACAATC
*
81927 AGGGATACTCCAACCCTATTATTTTCGAA
128 AGGGATACTCCAACCCCATTATTTTCGAA
* * * * * *
81956 GGGATACTTCAACCCCAATTTACTTCCAAAACACTGATTTTCCATAATCGGGGATACTCCAACCC
1 GGGATACTCCAACCCGATTTTATTTCCAAAACACTAATTTT-CATAATTGGGGATACTCCAACCC
82021 CGT
65 CGT
82024 GGTTATCTCC
Statistics
Matches: 191, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
157 49 0.26
158 133 0.70
159 9 0.05
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (156 bp):
GGGATACTCCAACCCGATTTTATTTCCAAAACACTAATTTTCATAATTGGGGATACTCCAACCCC
GTTATTTTCGAAGGGATACTCCAACCCCGACCTTACTTTTAAAACATCGATTTTCTACAATCAGG
GATACTCCAACCCCATTATTTTCGAA
Found at i:87787 original size:21 final size:20
Alignment explanation
Indices: 87763--87807 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
87753 TGAAAAAACA
87763 CATTGATTAGATA-AAAGAATG
1 CATTG-TTAGATAGAAAG-ATG
87784 CATTTGTTAGATAGAAAGATG
1 CA-TTGTTAGATAGAAAGATG
87805 CAT
1 CAT
87808 CCTTTATAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
20 1 0.05
21 14 0.64
22 7 0.32
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (20 bp):
CATTGTTAGATAGAAAGATG
Found at i:91294 original size:79 final size:79
Alignment explanation
Indices: 91161--91469 Score: 354
Period size: 79 Copynumber: 3.9 Consensus size: 79
91151 TTTTGGAGAT
* * * * * * *
91161 AATAACGGGGCTGGAGTATCCCTGATTATGAAAAATCGGTGTTTTGGAAGTAAAATCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAACCGGGGTTGG
91226 AGTATCCCCTCAGA
66 AGTATCCCCTCAGA
* * * * * *
91240 AATAACAGGGTTGGAATATCCCTGATTAT-AGAGAATCGGTATTTT-GAAACTAAAATCGGGGTT
1 AATAACGGGGTTGGAGTATCCCCGATTATGA-AAAATCGATATTTTAGAAA-TAAAACCGGGGTT
*
91303 GGAGTATCCCCT-TGAA
64 GGAGTATCCCCTCAG-A
* * * * *
91319 AATAATGGGGTTAGAGTATCCCCGACTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAACCGGGGTTGG
91384 AGTATCCCCTCAGA
66 AGTATCCCCTCAGA
* * ** *
91398 AATAATGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAACCGGGGTTGG
91463 AGTATCC
66 AGTATCC
91470 TCGATGAAAA
Statistics
Matches: 199, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
78 5 0.03
79 188 0.94
80 6 0.03
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAACCGGGGTTGG
AGTATCCCCTCAGA
Found at i:91458 original size:158 final size:158
Alignment explanation
Indices: 91174--91469 Score: 416
Period size: 158 Copynumber: 1.9 Consensus size: 158
91164 AACGGGGCTG
* * * * * *
91174 GAGTATCCCTGATTATGAAAAATCGGTGTTTTGGAAGTAAAATCGGGGTTGGAGTATCCCCTCAG
1 GAGTATCCCCGACTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAG
* ** *
91239 AAATAACAGGGTTGGAATATCCCTGATTATAGAGAATCGGTATTTTGAAACTAAAATCGGGGTTG
66 AAATAACAGGGTTGGAATATCCCCGATTATAGAGAATCAATATTTTGAAACTAAAACCGGGGTTG
91304 GAGTATCCCCTTGAAAATAATGGGGTTA
131 GAGTATCCCCTTGAAAATAATGGGGTTA
*
91332 GAGTATCCCCGACTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAG
1 GAGTATCCCCGACTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAG
** * * *
91397 AAATAATGGGGTTGGAGTATCCCCGATTAT-GAGAAATTAATATTTTAGAAA-TAAAGCCGGGGT
66 AAATAACAGGGTTGGAATATCCCCGATTATAGAG-AATCAATATTTT-GAAACTAAAACCGGGGT
91460 TGGAGTATCC
129 TGGAGTATCC
91470 TCGATGAAAA
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
157 3 0.03
158 113 0.94
159 4 0.03
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (158 bp):
GAGTATCCCCGACTATGAAAAATCGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAG
AAATAACAGGGTTGGAATATCCCCGATTATAGAGAATCAATATTTTGAAACTAAAACCGGGGTTG
GAGTATCCCCTTGAAAATAATGGGGTTA
Found at i:91486 original size:127 final size:127
Alignment explanation
Indices: 91346--91737 Score: 608
Period size: 127 Copynumber: 3.1 Consensus size: 127
91336 ATCCCCGACT
* *
91346 ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTG
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
91411 GAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCTCG
66 GAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCTCG
* *
91473 ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACAGGGTTA
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
* *
91538 GAGTATCCCCGATTATGAGAAATTAATATGTTAGAAATAAAGCTGGGGTTGGAGTATCC-CTG
66 GAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCTC-G
* *
91600 GTGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAACGGGGTTG
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
* * * * * *
91665 GAGTATCCCCGATTAAGAAAAATTGATATTTTGGAAATGAAA-CCGGGATTGGAGTATCCCTAAG
66 GAGTATCCCCGATTATGAGAAATTAATATTTTAGAAAT-AAAGCCGGGGTTGGAGTAT-CCT-CG
91729 ATGAAAAAT
1 ATGAAAAAT
91738 ATAGAAATTT
Statistics
Matches: 241, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
126 1 0.00
127 226 0.94
128 5 0.02
129 9 0.04
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (127 bp):
ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
GAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCTCG
Found at i:91491 original size:48 final size:49
Alignment explanation
Indices: 91404--91519 Score: 162
Period size: 48 Copynumber: 2.3 Consensus size: 49
91394 CAGAAATAAT
* *
91404 GGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCC
1 GGGGTTGGAGTATCCCCG--TATGAAAAATTAATATTTTAGAAATAAAACC
* * *
91455 GGGGTTGGAGTATCCTCG-ATGAAAAATTGATGTTTTAGAAATAAAACC
1 GGGGTTGGAGTATCCCCGTATGAAAAATTAATATTTTAGAAATAAAACC
91503 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
91520 TCGGAAATAA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 42 0.71
51 17 0.29
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (49 bp):
GGGGTTGGAGTATCCCCGTATGAAAAATTAATATTTTAGAAATAAAACC
Found at i:91654 original size:79 final size:78
Alignment explanation
Indices: 91582--91724 Score: 200
Period size: 79 Copynumber: 1.8 Consensus size: 78
91572 AAATAAAGCT
* * * *
91582 GGGGTTGGAGTATCCCTG-GT-GAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCC
1 GGGGTTGGAGTATCCCCGAGTAGAAAAATTGATATTTTAGAAATAAAACCGGGATTGGAGTATCC
91645 CCTCGGAAATAAC
66 CCTCGGAAATAAC
* * *
91658 GGGGTTGGAGTATCCCCGATTAAGAAAAATTGATATTTTGGAAATGAAACCGGGATTGGAGTATC
1 GGGGTTGGAGTATCCCCGAGT-AGAAAAATTGATATTTTAGAAATAAAACCGGGATTGGAGTATC
91723 CC
65 CC
91725 TAAGATGAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
76 17 0.30
77 1 0.02
79 39 0.68
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (78 bp):
GGGGTTGGAGTATCCCCGAGTAGAAAAATTGATATTTTAGAAATAAAACCGGGATTGGAGTATCC
CCTCGGAAATAAC
Found at i:94052 original size:33 final size:33
Alignment explanation
Indices: 94006--94073 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
93996 TACATTGTAA
** *
94006 AATGTATTGATACAATGAGCCATGTATCGATAC
1 AATGTATCAATACAATGAACCATGTATCGATAC
*
94039 AATGTATCAATACAATGAACGATGTATCGATAC
1 AATGTATCAATACAATGAACCATGTATCGATAC
94072 AA
1 AA
94074 ATTGTGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (33 bp):
AATGTATCAATACAATGAACCATGTATCGATAC
Found at i:97108 original size:2 final size:2
Alignment explanation
Indices: 97101--97134 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
97091 ATGGAATGTT
*
97101 TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97135 CTAATAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:98334 original size:33 final size:32
Alignment explanation
Indices: 98296--98371 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
98286 AATAATGTTA
*
98296 ATATAATATAAATATATGAATATATCAAAATTT
1 ATATAATATAAAT-TATCAATATATCAAAATTT
* *
98329 ATATAATAAAAATTATCAATATATTAAAATTT
1 ATATAATATAAATTATCAATATATCAAAATTT
*
98361 AAATAA-ATAAA
1 ATATAATATAAA
98372 AATACATAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 4 0.11
32 22 0.58
33 12 0.32
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (32 bp):
ATATAATATAAATTATCAATATATCAAAATTT
Found at i:98358 original size:32 final size:33
Alignment explanation
Indices: 98296--98375 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
98286 AATAATGTTA
* *
98296 ATATAATATAAATATATGAATATATCAAAATTT
1 ATATAATAAAAATATATCAATATATCAAAATTT
*
98329 ATATAATAAAAAT-TATCAATATATTAAAATTT
1 ATATAATAAAAATATATCAATATATCAAAATTT
*
98361 AAATAAATAAAAATA
1 ATAT-AATAAAAATA
98376 CATAAGACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
32 20 0.49
33 21 0.51
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (33 bp):
ATATAATAAAAATATATCAATATATCAAAATTT
Found at i:104925 original size:17 final size:17
Alignment explanation
Indices: 104903--104937 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
104893 TCCAAAATGA
104903 TTTAAACTCAAAATAAT
1 TTTAAACTCAAAATAAT
*
104920 TTTAAATTCAAAATAAT
1 TTTAAACTCAAAATAAT
104937 T
1 T
104938 CAAATTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTAAACTCAAAATAAT
Found at i:105008 original size:16 final size:16
Alignment explanation
Indices: 104981--105019 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
104971 AACTTAAACC
104981 TCAAAATGACTCAAATT
1 TCAAAATGACTC-AATT
*
104998 T-AAAATTACTCAATT
1 TCAAAATGACTCAATT
105013 TCAAAAT
1 TCAAAAT
105020 AACCATAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 14 0.70
17 1 0.05
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (16 bp):
TCAAAATGACTCAATT
Found at i:106457 original size:12 final size:13
Alignment explanation
Indices: 106430--106458 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
106420 AAATATGCTT
106430 ACTTTCTTTGGTA
1 ACTTTCTTTGGTA
106443 ACTTTCTTT-GTA
1 ACTTTCTTTGGTA
106455 ACTT
1 ACTT
106459 CCTGTCTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.55
Consensus pattern (13 bp):
ACTTTCTTTGGTA
Found at i:112691 original size:34 final size:34
Alignment explanation
Indices: 112619--112692 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 34
112609 TATATTTTTT
* * * *
112619 ATTTTTATAATTATTATAGGAAGTATATATTTTT
1 ATTTTTATAATTATTATAGGAAGAAAATATTGTA
* *
112653 ATTTTTATAATTATTATAGTAAGAAAATGTTGTA
1 ATTTTTATAATTATTATAGGAAGAAAATATTGTA
112687 ATTTTT
1 ATTTTT
112693 TTTAAAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.54
Consensus pattern (34 bp):
ATTTTTATAATTATTATAGGAAGAAAATATTGTA
Found at i:112696 original size:37 final size:34
Alignment explanation
Indices: 112614--112680 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
112604 TATTATATAT
* *
112614 TTTTTATTTTTATAATTATTATAGGAAGTATATA
1 TTTTTATTTTTATAATTATTATAGGAAGAAAATA
*
112648 TTTTTATTTTTATAATTATTATAGTAAGAAAAT
1 TTTTTATTTTTATAATTATTATAGGAAGAAAAT
112681 GTTGTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.55
Consensus pattern (34 bp):
TTTTTATTTTTATAATTATTATAGGAAGAAAATA
Found at i:114099 original size:2 final size:2
Alignment explanation
Indices: 114092--114116 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114082 CAAAAATAAA
114092 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
114117 ATTTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114351 original size:3 final size:3
Alignment explanation
Indices: 114337--114376 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
114327 TATGGAGTTG
*
114337 ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
114377 ATTTAAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:114696 original size:14 final size:15
Alignment explanation
Indices: 114677--114706 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
114667 TAAATATATC
114677 TAAAATTTA-AATTT
1 TAAAATTTATAATTT
114691 TAAAATTTATAATTT
1 TAAAATTTATAATTT
114706 T
1 T
114707 TTTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAAATTTATAATTT
Found at i:117315 original size:21 final size:22
Alignment explanation
Indices: 117273--117315 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
117263 GAGCTTAAGG
*
117273 AAATGAATTCTAAATATAAAAA
1 AAATGAATTCAAAATATAAAAA
*
117295 AAATGATTTCAAAAT-TAAAAA
1 AAATGAATTCAAAATATAAAAA
117316 TTGAAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28
Consensus pattern (22 bp):
AAATGAATTCAAAATATAAAAA
Found at i:119904 original size:80 final size:78
Alignment explanation
Indices: 119654--120022 Score: 317
Period size: 79 Copynumber: 4.6 Consensus size: 78
119644 ACGGGATTGA
* ** * ** *
119654 AGTATCCTCGATGGTGAAAAATTGATATTTT-GAAAATAAAATCAGGTTGAAGTATCCTTTTAGA
1 AGTATCCTCGATGGTGAAAAATTGATATTTTGGAAAAAAAAAAGAGGTTGGAGTATCCCCTTAAA
* *
119718 AATAATGGGGTTGG
66 AATAA-CGGGTTAG
* * * * * * **
119732 AGTATCCCCAATGGTGAAAAATCGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCCTCGAA
1 AGTATCCTCGATGGTGAAAAATTGATATTTTGGAAAAAAAAAAGAGGTTGGAGTATCCCCTTAAA
* *
119797 AATAACATGGTTGG
66 AATAAC-GGGTTAG
* * *
119811 AGTATCCCCGATGGTGAAAAATTGATATTTTGGAAACAAAAAAAGGGGTTGGAGTATCCCTTTAA
1 AGTATCCTCGATGGTGAAAAATTGATATTTTGGAAA-AAAAAAAGAGGTTGGAGTATCCCCTTAA
119876 AAATAACGGGATTAG
65 AAATAACGGG-TTAG
* * * * *
119891 AGTATCCTTGATGGTAAAAAAAATCGACATTTTAGAAATGAAAAAAAATTGAGGTTGGAGTATCC
1 AGTATCCTCGATGGT--GAAAAATTGATATTTT-GGAA--AAAAAAAA--GAGGTTGGAGTATCC
*
119956 CCTTGAAAATAACGAGGTTAG
59 CCTTAAAAATAACG-GGTTAG
* * *
119977 AGTATCTTTGATGGTAAAAAAATTGATATTTTGGAAATGAAAAAAA
1 AGTATCCTCGATGGT-GAAAAATTGATATTTTGGAAA--AAAAAAA
120023 TCAATGAATT
Statistics
Matches: 239, Mismatches: 38, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
78 28 0.12
79 69 0.29
80 46 0.19
82 14 0.06
83 3 0.01
84 17 0.07
85 16 0.07
86 44 0.18
87 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.28
Consensus pattern (78 bp):
AGTATCCTCGATGGTGAAAAATTGATATTTTGGAAAAAAAAAAGAGGTTGGAGTATCCCCTTAAA
AATAACGGGTTAG
Found at i:119965 original size:86 final size:82
Alignment explanation
Indices: 119748--120022 Score: 301
Period size: 80 Copynumber: 3.4 Consensus size: 82
119738 CCCAATGGTG
* * * * * *
119748 AAAAATCGATATTTTGGAAAT---AAAAACGGGGTTGGAGTATCCCCTCGAAAATAACATGGTTG
1 AAAAATTGATATTTTGGAAATGAAAAAAAAGAGGTTGGAGTATCCCCTTGAAAATAAC-GGGTTA
** *
119810 GAGTATCCCCGATGGT-G
65 GAGTATCCTTGATGGTAA
* * * *
119827 AAAAATTGATATTTTGGAAA--CAAAAAAAGGGGTTGGAGTATCCCTTTAAAAATAACGGGATTA
1 AAAAATTGATATTTTGGAAATGAAAAAAAAGAGGTTGGAGTATCCCCTTGAAAATAACGGG-TTA
119890 GAGTATCCTTGATGGTAAA
65 GAGTATCCTTGATGGT-AA
* * *
119909 AAAAATCGACATTTTAGAAATGAAAAAAAATTGAGGTTGGAGTATCCCCTTGAAAATAACGAGGT
1 AAAAATTGATATTTTGGAAATGAAAAAAAA--GAGGTTGGAGTATCCCCTTGAAAATAACG-GGT
*
119974 TAGAGTATCTTTGATGGTAA
63 TAGAGTATCCTTGATGGTAA
119994 AAAAATTGATATTTTGGAAATGAAAAAAA
1 AAAAATTGATATTTTGGAAATGAAAAAAA
120023 TCAATGAATT
Statistics
Matches: 165, Mismatches: 21, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
79 21 0.13
80 46 0.28
82 17 0.10
84 7 0.04
85 28 0.17
86 44 0.27
87 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (82 bp):
AAAAATTGATATTTTGGAAATGAAAAAAAAGAGGTTGGAGTATCCCCTTGAAAATAACGGGTTAG
AGTATCCTTGATGGTAA
Found at i:120734 original size:23 final size:23
Alignment explanation
Indices: 120694--120739 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
120684 ATTTTTAGGG
120694 AAAAATATTATAAAATTTGAAAA
1 AAAAATATTATAAAATTTGAAAA
* *
120717 AAAAATCATT-TAATATTTTAAAA
1 AAAAAT-ATTATAAAATTTGAAAA
120740 TAATTTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
AAAAATATTATAAAATTTGAAAA
Found at i:122777 original size:58 final size:58
Alignment explanation
Indices: 122682--122797 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 58
122672 GTTCCCCGAT
* **
122682 TATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTG-GAGTATCCCCTCGAAAATAA
1 TATGAGAAATTAATACTTTAGAAATAAAACCAAGGTTGCG-GTATCCCCTCGAAAATAA
* * *
122740 TATGAGAAATTAATACTTTAGAAATAAAGCTAAGGTTGCGGTATTCCCTCGAAAATAA
1 TATGAGAAATTAATACTTTAGAAATAAAACCAAGGTTGCGGTATCCCCTCGAAAATAA
122798 CAGGGTTGGA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
58 50 0.98
59 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.28
Consensus pattern (58 bp):
TATGAGAAATTAATACTTTAGAAATAAAACCAAGGTTGCGGTATCCCCTCGAAAATAA
Found at i:122838 original size:28 final size:28
Alignment explanation
Indices: 122780--122841 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
122770 TAAGGTTGCG
* * **
122780 GTATTCCCTCGAAAATAACAGGGTTGGA
1 GTATCCCCTCAAAAATAACAGGGTTAAA
122808 GTATCCCCTCAAAAATAAC-GGGATTAAA
1 GTATCCCCTCAAAAATAACAGGG-TTAAA
122836 GTATCC
1 GTATCC
122842 TCGATTGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (28 bp):
GTATCCCCTCAAAAATAACAGGGTTAAA
Found at i:122903 original size:79 final size:78
Alignment explanation
Indices: 122801--123082 Score: 351
Period size: 79 Copynumber: 3.6 Consensus size: 78
122791 AAAATAACAG
* * *
122801 GGTTGGAGTATCCCCT-CAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGGTGTTT
1 GGTTGGAGTATCCCCTCCGAAAATAACGGGATTAGAGTATCCTCGATTG-AAA-AATTGATGTTT
122865 TAGAAATAAAACCGA
64 TAGAAATAAAACCGA
* * * *
122880 GGTTAGAGTATCCCCTCCG-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTT
1 GGTTGGAGTATCCCCTCCGAAAATAACGGGATTAGAGTATCCTCGA-T-TGAAAAATTGATGTTT
*
122944 TAGAAATAAAACCGG
64 TAGAAATAAAACCGA
* *
122959 GGTTGGAGTATCCCCT-TGAAAATAACGGGATTGGAGTATCC-CTGA-TGAAAAATTGATGTTTT
1 GGTTGGAGTATCCCCTCCGAAAATAACGGGATTAGAGTATCCTC-GATTGAAAAATTGATGTTTT
* *
123021 AGAAATAAAACTGG
65 AGAAATAAAACCGA
* *
123035 GGTTGGAGTAT-CCCTTCGAAAATAACGGGGTTAGAGTATCCTCGATTG
1 GGTTGGAGTATCCCCTCCGAAAATAACGGGATTAGAGTATCCTCGATTG
123083 TGAAAAGACG
Statistics
Matches: 180, Mismatches: 15, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
75 4 0.02
76 65 0.36
77 3 0.02
78 2 0.01
79 99 0.55
80 5 0.03
81 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (78 bp):
GGTTGGAGTATCCCCTCCGAAAATAACGGGATTAGAGTATCCTCGATTGAAAAATTGATGTTTTA
GAAATAAAACCGA
Found at i:123074 original size:155 final size:158
Alignment explanation
Indices: 122800--123088 Score: 417
Period size: 155 Copynumber: 1.8 Consensus size: 158
122790 GAAAATAACA
*
122800 GGGTTGGAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGATGTTT
*
122865 TAGAAATAAAACCGAGGTTAGAGTATCCCCTCCGAAATAACGGGGTTGGAGTATCCCCGATTATG
66 TAGAAATAAAACCGAGGTTAGAGTATCCCCTCCGAAATAACGGGGTTAGAGTATCCCCGATTATG
122930 AAAAATTGATGTTTTAGAAATAAAACCG
131 AAAAATTGATGTTTTAGAAATAAAACCG
** **
122958 GGGTTGGAGTATCCCCTTGAAAATAACGGGATTGGAGTATCC-CTGA-TG-AAA-AATTGATGTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTC-GATTGCAAAGAATTGATGTT
* * * * * *
123019 TTAGAAATAAAACTGGGGTTGGAGTAT-CCCTTCGAAAATAACGGGGTTAGAGTATCCTCGATTG
65 TTAGAAATAAAACCGAGGTTAGAGTATCCCCTCCG-AAATAACGGGGTTAGAGTATCCCCGATTA
123083 TGAAAA
129 TGAAAA
123089 GACGGTGTTT
Statistics
Matches: 117, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
154 6 0.05
155 65 0.56
156 3 0.03
157 3 0.03
158 40 0.34
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.27
Consensus pattern (158 bp):
GGGTTGGAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGATGTTT
TAGAAATAAAACCGAGGTTAGAGTATCCCCTCCGAAATAACGGGGTTAGAGTATCCCCGATTATG
AAAAATTGATGTTTTAGAAATAAAACCG
Found at i:123123 original size:155 final size:158
Alignment explanation
Indices: 122806--123128 Score: 399
Period size: 155 Copynumber: 2.1 Consensus size: 158
122796 AACAGGGTTG
*
122806 GAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGGTGTTTTAGAAA
1 GAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGATGTTTTAGAAA
*
122871 TAAAACCGAGGTTAGAGTATCCCCTCCGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAAT
66 TAAAACCGAGGTTAGAGTATCCCCTCCGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAAT
* * * *
122936 TGATGTTTTAGAAATAAAACCGGGGTTG
131 CGATGTTTTAGAAATAAAACCAGAGTTA
** **
122964 GAGTATCCCCTTGAAAATAACGGGATTGGAGTATCC-CTGA-TG-AAA-AATTGATGTTTTAGAA
1 GAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTC-GATTGCAAAGAATTGATGTTTTAGAA
* * * * * *
123025 ATAAAACTGGGGTTGGAGTAT-CCCTTCGAAAATAACGGGGTTAGAGTATCCTCGATTGTGAAAA
65 ATAAAACCGAGGTTAGAGTATCCCCTCCG-AAATAACGGGGTTAGAGTATCCCCGATTATGAAAA
* * *
123089 GA-CGGTGTTTTGGAAATAAAATCAGAGTTA
129 -ATCGATGTTTTAGAAATAAAACCAGAGTTA
123119 GAGTA-CCCCT
1 GAGTATCCCCT
123129 GATTAAGAAA
Statistics
Matches: 143, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
154 11 0.08
155 91 0.64
156 4 0.03
157 3 0.02
158 34 0.24
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (158 bp):
GAGTATCCCCTCAAAAATAACGGGATTAAAGTATCCTCGATTGCAAAGAATTGATGTTTTAGAAA
TAAAACCGAGGTTAGAGTATCCCCTCCGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAAT
CGATGTTTTAGAAATAAAACCAGAGTTA
Found at i:125504 original size:13 final size:13
Alignment explanation
Indices: 125486--125510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125476 AATGCCTGAA
125486 TGTATCGATACAT
1 TGTATCGATACAT
125499 TGTATCGATACA
1 TGTATCGATACA
125511 CTTCCTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:125525 original size:21 final size:21
Alignment explanation
Indices: 125499--125538 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
125489 ATCGATACAT
125499 TGTATCGATACACTTCCTTAA
1 TGTATCGATACACTTCCTTAA
*
125520 TGTATCGATACATTTCCTT
1 TGTATCGATACACTTCCTT
125539 GGCAATAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (21 bp):
TGTATCGATACACTTCCTTAA
Found at i:125587 original size:19 final size:18
Alignment explanation
Indices: 125563--125625 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
125553 AGCGATATAT
125563 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
*
125582 TGTATCCATAC--A--T-
1 TGTATCGATACAAACTTA
125595 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
125614 TGTATCGATACA
1 TGTATCGATACA
125626 TTTATGGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
14 1 0.03
16 2 0.06
18 1 0.03
19 22 0.61
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:125602 original size:32 final size:32
Alignment explanation
Indices: 125561--125627 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
125551 GTAGCGATAT
125561 ATTGTATCGATACAAAACTTATGTATCCATAC
1 ATTGTATCGATACAAAACTTATGTATCCATAC
* *
125593 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTATGTATCCATAC
125625 ATT
1 ATT
125628 TATGGTTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (32 bp):
ATTGTATCGATACAAAACTTATGTATCCATAC
Found at i:125711 original size:21 final size:20
Alignment explanation
Indices: 125685--125723 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
125675 GTTGGGACCT
125685 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATT-TAGAAA
125706 TGTATCGATACATTTAGA
1 TGTATCGATACATTTAGA
125724 TAAAAATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTAGAAA
Found at i:126379 original size:41 final size:42
Alignment explanation
Indices: 126334--126425 Score: 116
Period size: 41 Copynumber: 2.2 Consensus size: 42
126324 CGTCCCGTTT
* *
126334 TTTGAGGACAAAGAAAAAG-GGAAACGAAA-TACGTCCTGCTC
1 TTTGAGGACAAA-AAAAAGAGGAAAAGAAAGTACATCCTGCTC
* * *
126375 TTTGAGGACAAAAGAAAGAGGAAAATAAAGTGCATCCTGCTC
1 TTTGAGGACAAAAAAAAGAGGAAAAGAAAGTACATCCTGCTC
126417 TTTGAGGAC
1 TTTGAGGAC
126426 TGGAAAATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
40 5 0.11
41 20 0.45
42 19 0.43
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (42 bp):
TTTGAGGACAAAAAAAAGAGGAAAAGAAAGTACATCCTGCTC
Found at i:126500 original size:55 final size:55
Alignment explanation
Indices: 126409--126536 Score: 184
Period size: 55 Copynumber: 2.3 Consensus size: 55
126399 ATAAAGTGCA
* * *
126409 TCCTGCTCTTTGAGGACTGGAAAATGCCATCGACTTGTGTGGGCTTTAAGAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * * *
126464 TCCTGCTTTTTGAGGGCTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
*
126519 TCCTACTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
126537 AAAGGGCGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
Found at i:126622 original size:94 final size:93
Alignment explanation
Indices: 126457--126628 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 93
126447 GTGGGCTTTA
* * * * * *
126457 AGAGGCGTCCTGCTTTTTGAGGGCTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCC
1 AGAGGCGTCCTGCTCTTTGAGGACTGAGAAGCGCCACCAACTTGTGTGGGCTTTAAAAAGCGCCC
126522 TACTCTTTGAGGACTAAAGGGCGAAAGG
66 TACTCTTTGAGGACTAAAGGGCGAAAGG
*
126550 AGAGAGCGTCCTGCTCTTTGAGGATTGAGAAGCGCCACCAACTTGTGTGGGCTTTAAAAAGCGCC
1 AGAG-GCGTCCTGCTCTTTGAGGACTGAGAAGCGCCACCAACTTGTGTGGGCTTTAAAAAGCGCC
*
126615 CTGCTCTTTGAGGA
65 CTACTCTTTGAGGA
126629 TTGAAAGGTG
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
93 4 0.06
94 66 0.94
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (93 bp):
AGAGGCGTCCTGCTCTTTGAGGACTGAGAAGCGCCACCAACTTGTGTGGGCTTTAAAAAGCGCCC
TACTCTTTGAGGACTAAAGGGCGAAAGG
Found at i:126640 original size:149 final size:149
Alignment explanation
Indices: 126409--126686 Score: 398
Period size: 149 Copynumber: 1.9 Consensus size: 149
126399 ATAAAGTGCA
* * * * * * *
126409 TCCTGCTCTTTGAGGACTGGAAAATGCCATCGACTTGTGTGGGCTTTAAGAGGCGTCCTGCTTTT
1 TCCTGCTCTTTGAGGACTGGAAAACGCCACCAACTTGTGTGGGCTTTAAAAAGCGCCCTGCTCTT
* *
126474 TGAGGGCTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAA
66 TGAGGGATGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAA
126539 AGGGCGAAAGGAGAGAGCG
131 AGGGCGAAAGGAGAGAGCG
* *
126558 TCCTGCTCTTTGAGGA-TTGAGAAGCGCCACCAACTTGTGTGGGCTTTAAAAAGCGCCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGA-AAACGCCACCAACTTGTGTGGGCTTTAAAAAGCGCCCTGCTCT
* * *
126622 TTGA-GGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
65 TTGAGGGATGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACT
126686 A
129 A
126687 GAAAATGCCA
Statistics
Matches: 113, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
148 9 0.08
149 104 0.92
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (149 bp):
TCCTGCTCTTTGAGGACTGGAAAACGCCACCAACTTGTGTGGGCTTTAAAAAGCGCCCTGCTCTT
TGAGGGATGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAA
AGGGCGAAAGGAGAGAGCG
Found at i:126755 original size:61 final size:59
Alignment explanation
Indices: 126545--127219 Score: 697
Period size: 61 Copynumber: 11.6 Consensus size: 59
126535 CTAAAGGGCG
* * *
126545 AAAGGAGAGAGCGTCCTGCTCTTTGAGGATTGAGAAGCGCCACCAACTTGTGTGGGCTTT-
1 AAAGGAAAG-GCGTCCTGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTGTGGGCTTTA
* *
126605 -AA--AAA-GCGCCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTA
*
126660 ----GAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGA
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-A
* *
126717 AAAGGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGA
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-A
* * *
126778 AAAGAAAAGGCATCTTGC-CTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCA
1 AAAGGAAAGGCGTCCTGCTC-TTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT--A
* *
126840 AAAAGAAA-GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTA
* * * *
126899 AAAGGAGAAAGCGTCCTACTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTAGGCTTTA
1 AAAGGA-AAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTA
* * ** *
126959 AAAGGAAAATGCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTA
1 AAAGG-AAAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTA
* *
127020 AAAGG--A---GTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTA
* * ** *
127075 AAAGAAAAAGACGTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT-
1 AAAG-GAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTA
127135 --A--AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTA
*
127190 ----GAAAGGCGTTCTGCTCTTTGAGGACT-AAAG
1 AAAGGAAAGGCGTCCTGCTCTTTGAGGACTGAAAG
127220 GGTGAAAGGA
Statistics
Matches: 537, Mismatches: 47, Indels: 69
0.82 0.07 0.11
Matches are distributed among these distances:
53 1 0.00
54 11 0.02
55 203 0.38
56 4 0.01
57 2 0.00
58 3 0.01
59 11 0.02
60 56 0.10
61 233 0.43
62 13 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (59 bp):
AAAGGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTA
Found at i:126777 original size:116 final size:115
Alignment explanation
Indices: 126555--127215 Score: 719
Period size: 116 Copynumber: 5.7 Consensus size: 115
126545 AAAGGAGAGA
* * *
126555 GCGTCCTGCTCTTTGAGGA-TTGAGAA-GCGCCACCAACTTGTGTGGGCTTT--AA--AAAGCGC
1 GCGTCCTGCTCTTTGAGGACTAGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCGT
*
126614 CCTGCTCTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
65 CCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
126665 GCGTCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAGGTG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAA-GCG
*
126729 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAG
64 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
* * *
126787 GCATCTTGC-CTTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGC
1 GCGTCCTGCTC-TTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAGGAAAGC
* * *
126850 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA
63 GTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAG
* * *
126909 GCGTCCTACTCTTTGAGGACT--AAAGGTGCCACCAGCTTGTGTAGGCTTTAAAAGGAAAATGCG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAA-GCG
* ** * *
126972 TCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAG
64 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
127024 GAGTCTTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGACG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GAAAG-CG
** * *
127088 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAG
64 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
127140 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-G---GCGTT
1 GCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCGTC
127200 CTGCTCTTTGAGGACT
66 CTGCTCTTTGAGGACT
127216 AAAGGGTGAA
Statistics
Matches: 481, Mismatches: 45, Indels: 50
0.84 0.08 0.09
Matches are distributed among these distances:
110 62 0.13
111 4 0.01
113 2 0.00
115 24 0.05
116 178 0.37
117 5 0.01
119 5 0.01
120 3 0.01
121 77 0.16
122 112 0.23
123 9 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (115 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGCGTC
CTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:128300 original size:1 final size:1
Alignment explanation
Indices: 128294--128367 Score: 58
Period size: 1 Copynumber: 74.0 Consensus size: 1
128284 CAGATTCTTC
* * * * * * * * * *
128294 TTTTTTTTTCTCTCTTTTTTCTTTGTTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTGTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
128359 TTTTTTTTT
1 TTTTTTTTT
128368 GAAAAAGAAT
Statistics
Matches: 53, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.86
Consensus pattern (1 bp):
T
Found at i:128323 original size:12 final size:12
Alignment explanation
Indices: 128294--128368 Score: 78
Period size: 12 Copynumber: 6.0 Consensus size: 12
128284 CAGATTCTTC
* *
128294 TTTTTTTTTCTC
1 TTTTTTTTTTTG
*
128306 TCTTTTTTCTTTG
1 T-TTTTTTTTTTG
128319 TTTTTTTTTTTG
1 TTTTTTTTTTTG
*
128331 TTTTTTTGTTTTT
1 TTTTTTT-TTTTG
128344 TTGTTTTTTTTTG
1 TT-TTTTTTTTTG
*
128357 TGTTTTTTTTTG
1 TTTTTTTTTTTG
128369 AAAAAGAATA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
12 28 0.53
13 20 0.38
14 5 0.09
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:128325 original size:28 final size:28
Alignment explanation
Indices: 128294--128361 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
128284 CAGATTCTTC
* *
128294 TTTTTTTTTCTCTCTTT-TTTCTTTGTT
1 TTTTTTTTTGTTTCTTTGTTTCTTTGTT
* *
128321 TTTTTTTTTGTTTTTTTGTTTTTTTGTT
1 TTTTTTTTTGTTTCTTTGTTTCTTTGTT
*
128349 TTTTTTTGTGTTT
1 TTTTTTTTTGTTT
128362 TTTTTTGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (28 bp):
TTTTTTTTTGTTTCTTTGTTTCTTTGTT
Found at i:128338 original size:20 final size:19
Alignment explanation
Indices: 128308--128367 Score: 84
Period size: 20 Copynumber: 3.1 Consensus size: 19
128298 TTTTTCTCTC
*
128308 TTTTTTCTTTGTTTTTTTT
1 TTTTTTTTTTGTTTTTTTT
128327 TTTGTTTTTTTGTTTTTTTGT
1 TTT-TTTTTTTGTTTTTTT-T
*
128348 TTTTTTTTGTGTTTTTTTT
1 TTTTTTTTTTGTTTTTTTT
128367 T
1 T
128368 GAAAAAGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.14
20 28 0.76
21 4 0.11
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTGTTTTTTTT
Found at i:128362 original size:28 final size:29
Alignment explanation
Indices: 128310--128365 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
128300 TTTCTCTCTT
*
128310 TTTTCTTTGTTTTTTTTTTTGTTTTTTTG
1 TTTTCTTTGTTTTTTTTTGTGTTTTTTTG
128339 TTTT-TTTGTTTTTTTTTGTGTTTTTTT
1 TTTTCTTTGTTTTTTTTTGTGTTTTTTT
128366 TTGAAAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.88
Consensus pattern (29 bp):
TTTTCTTTGTTTTTTTTTGTGTTTTTTTG
Found at i:128363 original size:8 final size:8
Alignment explanation
Indices: 128308--128353 Score: 67
Period size: 8 Copynumber: 5.8 Consensus size: 8
128298 TTTTTCTCTC
*
128308 TTTTTTCT
1 TTTTTTGT
128316 TTGTTTT-T
1 TT-TTTTGT
128324 TTTTTTGT
1 TTTTTTGT
128332 TTTTTTGT
1 TTTTTTGT
128340 TTTTTTGT
1 TTTTTTGT
128348 TTTTTT
1 TTTTTT
128354 TTGTGTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 4 0.11
8 28 0.78
9 4 0.11
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (8 bp):
TTTTTTGT
Found at i:140955 original size:79 final size:79
Alignment explanation
Indices: 140686--140996 Score: 349
Period size: 79 Copynumber: 3.9 Consensus size: 79
140676 ATTTCCTGAC
* * * *
140686 GAGAAATTTAATATTTTGGAGATAATAA-CGGGGTTGGCGTATCCCCTTGAAAATAATGGGGTTG
1 GAGAAA-TTAATATTTTAGAAATAA-AACCGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTG
* *
140750 GAGTATCCCCGGTTGT
64 GAGTATCCCCGATTAT
* ** * * * * *
140766 GAAAAATCGATGA-TTTAGAAATAAAATCGGGATT-GATGCATCCCCTAGGAAATAACGGGGTTG
1 GAGAAATTAAT-ATTTTAGAAATAAAACCGGGGTTGGA-GTATCCCCTTGAAAATAACGGGGTTG
140829 GAGTATCCCCGATTAT
64 GAGTATCCCCGATTAT
* * * * *
140845 GAGAAATTAATATTTTAGAAATAAAACCGGGGTTAGAGTATTCCCTCGGAAATAATGGGGTTGGA
1 GAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGA
140910 GTATCCCCGATTAT
66 GTATCCCCGATTAT
* * * * *
140924 GAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGGGTATTCCCTTGAAAATAACAGGGTTAGA
1 GAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGA
140989 GTATCCCC
66 GTATCCCC
140997 TCGAAAATAA
Statistics
Matches: 196, Mismatches: 30, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
78 4 0.02
79 184 0.94
80 8 0.04
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
GAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGA
GTATCCCCGATTAT
Found at i:140984 original size:28 final size:28
Alignment explanation
Indices: 140961--141024 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
140951 CGGGGTTGGG
* *
140961 GTATTCCCTTGAAAATAACAGGGTTAGA
1 GTATCCCCTCGAAAATAACAGGGTTAGA
*
140989 GTATCCCCTCGAAAATAAC-GAGATTAGA
1 GTATCCCCTCGAAAATAACAG-GGTTAGA
141017 GTATCCCC
1 GTATCCCC
141025 GATTATGGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (28 bp):
GTATCCCCTCGAAAATAACAGGGTTAGA
Done.