Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 10 of 16
Found at i:1546212 original size:21 final size:22
Alignment explanation
Indices: 1546170--1546212 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1546160 GAGTTATGAA
**
1546170 CAAATGTTTTTGAACCTTAAAT
1 CAAATGTTTTTGAACCGAAAAT
*
1546192 CAAATGTTTTT-AAGCGAAAAT
1 CAAATGTTTTTGAACCGAAAAT
1546213 ATTCCAGGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (22 bp):
CAAATGTTTTTGAACCGAAAAT
Found at i:1554425 original size:36 final size:37
Alignment explanation
Indices: 1554379--1554458 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 37
1554369 GAGGGATAAT
* *
1554379 TTTTTTTGAAAATAAATTTTTTATCAAG-GGAGAGAA
1 TTTTTTTGAAAATAAATATTTTATCAAGAGGAGAAAA
1554415 TTTTTTTGAAAATAAATATTTTATCAAGAAGGAGAAAA
1 TTTTTTTGAAAATAAATATTTTATCAAG-AGGAGAAAA
1554453 TTTTTT
1 TTTTTT
1554459 AAACGAGAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
36 27 0.68
38 13 0.32
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.44
Consensus pattern (37 bp):
TTTTTTTGAAAATAAATATTTTATCAAGAGGAGAAAA
Found at i:1557715 original size:12 final size:12
Alignment explanation
Indices: 1557698--1557722 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1557688 GTTGAACCTC
1557698 TATAAACATTTG
1 TATAAACATTTG
1557710 TATAAACATTTG
1 TATAAACATTTG
1557722 T
1 T
1557723 CTTAAGCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TATAAACATTTG
Found at i:1559189 original size:13 final size:13
Alignment explanation
Indices: 1559171--1559200 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1559161 CCATTTGAAG
*
1559171 CAATGTATCGATA
1 CAATGTATCAATA
1559184 CAATGTATCAATA
1 CAATGTATCAATA
1559197 CAAT
1 CAAT
1559201 ATGCCATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (13 bp):
CAATGTATCAATA
Found at i:1559307 original size:13 final size:13
Alignment explanation
Indices: 1559289--1559313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1559279 ACAATGAACA
1559289 TGTATCGATACAT
1 TGTATCGATACAT
1559302 TGTATCGATACA
1 TGTATCGATACA
1559314 AAGCATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1561680 original size:22 final size:21
Alignment explanation
Indices: 1561645--1561694 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
1561635 TTTGTTGATG
*
1561645 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
1561665 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
1561686 AATTTGAAG
1 ATTTTGAAG
1561695 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:1561691 original size:21 final size:22
Alignment explanation
Indices: 1561652--1561694 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1561642 ATGATTTTGA
* *
1561652 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
1561674 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
1561695 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:1561821 original size:13 final size:13
Alignment explanation
Indices: 1561803--1561828 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1561793 TAGTAACCCT
1561803 TGTATCGATACAA
1 TGTATCGATACAA
1561816 TGTATCGATACAA
1 TGTATCGATACAA
1561829 AGAATATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1569324 original size:457 final size:458
Alignment explanation
Indices: 1568445--1570143 Score: 1255
Period size: 457 Copynumber: 3.7 Consensus size: 458
1568435 TAAGTTCCCA
* *
1568445 CCTTAAATGAGCCAAACATAGATTCTAGTAATGATATTCATTCATTTTGAAATTAGGCACTATAA
1 CCTTAAATGAGACAAACATAGATTCTAGTAATGATATTCATTCATTTTGAAATGAGGCACTATAA
* * *
1568510 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCTTGAAAATCTTTTCCTTCC
66 ACACATTCTCCTCAATAGGATAAATGATACTGATGATTTTTTTTGCATGAAAATCTTTTCCTTCC
* *
1568575 CCTATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTAGTAACAATCT
131 ACTATTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTAGTAACAATCT
* ** *** * *
1568640 CCATTCTTTTCCAGATTGGGAACCAAAGGCACATTCCCTTCATTGGGGTACATGACATTGATGCT
196 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTACAGTACACGACATTGACGCT
* * *
1568705 TTGATGTAGCAAGAAAAGATTTTCTTTCCATCGTTTTTGAAAGAATCAAAATTTGTCTGTAAAAT
261 TTGATGTAGCAAGAAAAGATTTTCCTTCCACCGTTTTTGAAAGAATCAAAATTTGCCTGTAAAAT
* * *
1568770 AAGACAAACACGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTA
326 AAGACAAACACGAATACTCATACAAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTA
* **
1568835 TTCTCATTAGAATACTAGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAGTTC
391 TTCTCATAAGAATACTAGATATTGAAGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAGTTC
1568900 GTG
456 GTG
* * * * * **
1568903 CCTTAAATGAGACAAATATGGATTCTAGTGATGGTCTTCATTCATTTTGTGATGAGGCACTATAA
1 CCTTAAATGAGACAAACATAGATTCTAGTAATGATATTCATTCATTTTGAAATGAGGCACTATAA
* ** * * * * *
1568968 ACAGATTCTTTTCAATAGGATAAGTGATACTGAT-TTTTTTTTTGCATGGAAATCTTTTCTTTGC
66 ACACATTCTCCTCAATAGGATAAATGATACTGATGATTTTTTTTGCATGAAAATCTTTTCCTTCC
* * * * * * *
1569032 ACTATTTTTCTAAAAATTAATGTTCATCTCTTAAATAAGACAAGCATCGATTCTCA-TGAGAGTC
131 ACTATTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-AGTAACAATC
*
1569096 -CGCATTCTTTTCAAGATTGGGAACCAAAAATACATTCCCTTCATTACAGTACACGACATTGACG
195 TC-CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTACAGTACACGACATTGACG
* * * * * *
1569160 CTTTGGTGTAGCAATAAAAGCTTTTCCTTCCACCGTTTTT-AAGAGAATCAAAGTTTGCCTTTCA
259 CTTTGATGTAGCAAGAAAAGATTTTCCTTCCACCGTTTTTGAA-AGAATCAAAATTTGCCTGTAA
* * *** * *
1569224 AATAAGACAAACATGAATAGTCATACAAATCCCCATTCTTTTTGTGATTAGGCGCCACAAACGTA
323 AATAAGACAAACACGAATACTCATACAAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATA
* * * *
1569289 GTCTTCTTATAAGGATAC-AGAATATTGAAGCTTTGGTTTTGCAAGAAAGGTTTTTTTCCCACCA
388 GTATTCTCATAAGAATACTAG-ATATTGAAGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACC-
*
1569353 ATTTTTCAAAGTCTAAG
451 A--GTTC---G--T--G
* * ** * * *
1569370 TCCGCGTCTCAAATAAGCCAAACA-AGGATTCTAG-AATTTTTCTTCATTCACTTTGTAATTGA-
1 --C-C-T-T-AAATGAGACAAACATA-GATTCTAGTAA-TGATATTCATTCATTTTG-AAATGAG
* * * * * *
1569432 GCATTATAAACACATTCTCCTCATTAAGATTAATGATAATGATAATTTTCTTTTGCATGAAAATC
57 GCACTATAAACACATTCTCCTCAATAGGATAAATGATACTGATGATTTT-TTTTGCATGAAAATC
* * * * *
1569497 TTTTCTTTTCA-TAATTTTCCTTAAAATCAAAGTTCATCCCTTAAACAAGACAAGTATCGATTCT
121 TTTTCCTTCCACT-ATTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * *
1569561 CGTAACAATCCCCATTCTTTTCAAGATTAGG----------A-A----C--C--TA-A--A-AC-
185 AGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTACAGTACACG
* * * * * * *
1569602 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
250 ACATTGACGCTTTGATGTAGCAAGAAAAGATTTTCCTTCCACCGTTTTTGAAAGAATCAAAATTT
* * * * * * * * * *
1569667 GTCTCTTAAATAAGACAAACA-TAATTCATTCATACTAATCCCC-TTTTTTTTAGGATTTGGCAC
315 GCCTGTAAAATAAGACAAACACGAA-T-ACTCATACAAATCCCCATTCTTTTCAAGATTAGGCAC
* * * * * *
1569730 C-CTAAACATAGTCTTCTCACAAGGATA-TATGATATTGATGCTTTCGTTTCGCAAGAAAGGCCT
378 CAC-AAACATAGTATTCTCATAAGAATACTA-GATATTGAAGCTTTGGTTTTGCAAGAAA-G---
*** * *
1569793 TTGCCTTACAAATTTTTGTAGAGTCTAAGTTCATG
437 --G-C-T-----TTTTT-CCCA--C-CAGTTCGTG
** ** * * * * ** * * *
1569828 CCACAAATGAGGTAAACATAGATTTTAGGAATGATCTTTATTCATTTTGTGATTAAGCAGTATAA
1 CCTTAAATGAGACAAACATAGATTCTAGTAATGATATTCATTCATTTTGAAATGAGGCACTATAA
** * * * * *
1569893 ACACATTCTTTTCAATAGGATAAGTGATATTGATGATTTTCTTTTGCATGCAAATCTTTTCTTTT
66 ACACATTCTCCTCAATAGGATAAATGATACTGATGATTTT-TTTTGCATGAAAATCTTTTCCTTC
* * ** * * * * * *
1569958 TACTATTTTCGTTGAACTTAAAGTTCATCCCTTAAATAAAAGAAGCTTCGATTCTCA-TAACAGT
130 CACTATTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-AGTAACAAT
* * * * * * *
1570022 CTCCATTTTTTTCAAGATTGGGAACAAAAAATACATTTCCTTTATTA-GGATACACGACATTGAT
194 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTACAG-TACACGACATTGAC
* * * * * *
1570086 GCTTT-AGGGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
258 GCTTTGA-TGTAGCAAGAAAAGATTTTCCTTCCACCGTTTTTGAAAGAATCAAAATTTG
1570144 TCTCTTAAAT
Statistics
Matches: 987, Mismatches: 173, Indels: 144
0.76 0.13 0.11
Matches are distributed among these distances:
450 3 0.00
451 141 0.14
452 183 0.19
453 5 0.01
455 2 0.00
456 8 0.01
457 292 0.30
458 88 0.09
459 1 0.00
460 5 0.01
462 1 0.00
463 2 0.00
464 6 0.01
465 6 0.01
467 4 0.00
469 1 0.00
470 1 0.00
471 3 0.00
472 2 0.00
473 68 0.07
474 9 0.01
475 93 0.09
476 63 0.06
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (458 bp):
CCTTAAATGAGACAAACATAGATTCTAGTAATGATATTCATTCATTTTGAAATGAGGCACTATAA
ACACATTCTCCTCAATAGGATAAATGATACTGATGATTTTTTTTGCATGAAAATCTTTTCCTTCC
ACTATTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTAGTAACAATCT
CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTACAGTACACGACATTGACGCT
TTGATGTAGCAAGAAAAGATTTTCCTTCCACCGTTTTTGAAAGAATCAAAATTTGCCTGTAAAAT
AAGACAAACACGAATACTCATACAAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTA
TTCTCATAAGAATACTAGATATTGAAGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAGTTC
GTG
Found at i:1571067 original size:476 final size:478
Alignment explanation
Indices: 1570311--1572421 Score: 1991
Period size: 476 Copynumber: 4.5 Consensus size: 478
1570301 TTTTCCTTAC
* * * * **
1570311 GATAAGTGATATTGATGATTTCCTTTTACACT-AAATTCTTTTCTTTACCCTATTTTTTTTAAAA
1 GATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTACCCTATTTTCCTTAAAA
* * ** * * * * *
1570375 TCAAAGTTCATCCTTTAAATAAAACAAGTGTCAATTCTCATTACAGTCTCCATTATTTTCTAGAT
65 TCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGAT
* * * *
1570440 TGGTAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
130 TGGGAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * *
1570505 AGCTTTTCTTTCCACCGTTTTT-TATAAAATCAAAGTTTGCCTCTAAAA-AAGAACAAACATTAA
195 AGCTTTTCTTTCCACCGTTTTTGT-TAAAATCAAAGTTTGTCTTTAAAATAAG-ACAAACATGAA
* * *
1570568 TACTCATACTATT-TCTCATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTTATTAGGAT
258 TACTCATACTATTCCCT-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATAAGGAT
* * * *
1570632 ACATGATATTGGTACTTTGGTTTCGCAAGAAATGTTTTTTTCCCACCAATTTTTATAAAGTTTAT
322 ACATGATATTGGTACTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* *
1570697 GTTCGTGCCTCAAATGAAG-CGAACATGGATTCTAGCAA-TGATCTTCATTCATTTTGTGATTAG
387 GTCCGTGCCTCAAATGAAGACAAACATGGATTCTAGCAATTGATCTTCATTCATTTTGTGATTAG
* *
1570760 GCACTATAAACTCATTCTCCTT-ATTAG
452 GCACTATAAACACATTCT-CTTCAATAG
* * * *
1570787 GCTAAATGATATTGATGATTTTTTTTTGCGTGAAAATCTTTTCTTTACCCTTTTTTCCTTAAAAT
1 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
*
1570852 -ATAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTAGTAACAATCTCCATTCTTTTCAAGAT
66 CA-AAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGAT
* * *
1570916 TGTGAACCAAAAGCACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCACGAAA
130 TGGGAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * *
1570981 TGCTTTTCATTCTACCGTTTTTGTTAAAATCAAAGTTTGTCTTTAAAATTAGACAAAGATGAATA
195 AGCTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTTGTCTTTAAAATAAGACAAACATGAATA
* * * * * **
1571046 CTCATACTATTCCCTATTCTTTTCAAGACTAGACAACTTAAACATAGTCTT-TTCGTTGGGATAC
260 CTCATACTATTCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTT-ATAAGGATAC
* * * * *
1571110 ATGATATTGGTGCTTTGGTTTCGAAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTATGT
324 ATGATATTGGTACTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
* * *
1571175 CCGTGCCTTAAATG-AGACAAAAATGGATTCT--CATATTGATCTTCATTCATGTTGTGATTAGG
389 CCGTGCCTCAAATGAAGACAAACATGGATTCTAGCA-ATTGATCTTCATTCATTTTGTGATTAGG
* ** * *
1571237 TACTATAAACAGGTTATTTTCAATAG
453 CACTATAAACACATTCTCTTCAATAG
* * *
1571263 GATAAGTGATATTGATGATTTTCTTTTTGCAT-ATAAATCTTTTCTTTGCACTATTTTCCTTAAA
1 GATAAATGATATTGATGATTTTC-TTTTGCATGA-AAATCTTTTCTTTACCCTATTTTCCTTAAA
* * * *
1571327 ATCAAAGTTCATCTCTTAAAATAAGATAAGCATCGATTCTCGTAACAATC-CCATTCTCTTCAAG
64 ATCAAAGTTCATCCCTT-AAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAG
* *
1571391 ATTGGGAACCAAAAACACATTTCCATCATTA-AGATACATGACATTGATGCTTTGGTGTCGCAAG
128 ATTGGGAACCAAAAACACATTCCCTTCATTAGA-ATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * *
1571455 AAACGCTTTTCTTTCCACC-TTTTT-TAAGAGAATCAATGTTTGCCTTTCAAATAAGACAAACAT
192 AAAAGCTTTTCTTTCCACCGTTTTTGTTA-A-AATCAAAGTTTGTCTTTAAAATAAGACAAACAT
* * * *** * * *
1571518 GAATAGTCATACAAATCACC-ATTCTTTTTGGGATTAGGCGCCACAAACGTAGTCTTCTTATAAG
255 GAATACTCATACTATTC-CCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATAAG
* * *
1571582 GATACA-GAATATT-GAAGCTTTGGTTTTGCAAGAAAGGTTTTTTTCCCACCAATTTTT-CAAAG
319 GATACATG-ATATTGGTA-CTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAG
* * * * ** * *
1571644 TCTAAGTCCGCGTCTCAAAT-AAGCCAAACAAGGATTCTAG-AATTTTTCTTCATTCACTTTGTA
382 TCTAAGTCCGTGCCTCAAATGAAGACAAACATGGATTCTAGCAATTGATCTTCATTCATTTTGTG
* * * *
1571707 ATT-GAGCATTATAAACACATTCTCCTCATTAA
447 ATTAG-GCACTATAAACACATTCTCTTCAATAG
* * * *
1571739 GATTAATGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTT-TCATAATTTTCCTTAAAA
1 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCT-ATTTTCCTTAAAA
* * * * *
1571803 TCAAAGTTAATCCCTTAAACAAGACAAGTATCAATTCTCGTAACAATCCCCATTCTTTTCAGGAT
65 TCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGAT
*
1571868 TAGG----------A-A----C--C--TA-AA-AC---ACATTGATGCTTTGGTGTCGCAAGAAA
130 TGGGAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* *
1571909 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACAT-AAT
195 AGCTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTTGTCT-TTAAAATAAGACAAACATGAA-
* * * * * * *
1571972 TCACTCATACTAATCCCCT-TT-TTTTTAGGATTTGGCACCCTAAACATAGTCTTCTCACAAGGA
258 T-ACTCATACT-ATTCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATAAGGA
* * * * ** * * * *
1572035 TATATGATATTGATGCTTTCGTTTCGCAAGAAAGG-CCTTTGCCTTACAAATTTTTGTAGAGTCT
321 TACATGATATTGGTACTTTGGTTTCGCAAGAAAGGTTTTTTTCC-CACCAATTTTTGTAAAGTCT
* * * ** * * *
1572099 AAGTTCATGCCACAAATG-AGGTAAACATAGATTTTAGGAA-TGATC-T--TT-A-------ATT
385 AAGTCCGTGCCTCAAATGAAGACAAACATGGATTCTAGCAATTGATCTTCATTCATTTTGTGATT
* * * *
1572151 AAGCAGTATAAACACATTCTTTTGAATAG
450 AGGCACTATAAACACATTCTCTTCAATAG
* * *** * * *
1572180 GATAAGTGATATTGATGATTTTCTTTTGCATGCAAATCTTTTCTTTTTACTATTTTCGTTGAACT
1 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
* * * * * * *
1572245 TAAAGTTCATCCCTTAAATAAAAGAAGCTTCGATTCTCGTAACAGTCTCCATTTTTTTCAAGATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * * * * * *
1572310 GGGAACAAAAAATACATTTCCTTTATTAGGATACACGACATTGATGCTTTAGG-GTTGCAAGAAA
131 GGGAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTT-GGTGTCGCAAGAAA
* *
1572374 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
195 AGCTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTTGTCT-TTAAA
1572422 TATGGATAAT
Statistics
Matches: 1344, Mismatches: 222, Indels: 148
0.78 0.13 0.09
Matches are distributed among these distances:
441 132 0.10
442 2 0.00
448 1 0.00
449 2 0.00
450 7 0.01
451 142 0.11
452 55 0.04
453 5 0.00
454 2 0.00
455 1 0.00
456 4 0.00
458 1 0.00
460 3 0.00
461 1 0.00
462 2 0.00
464 1 0.00
465 69 0.05
466 4 0.00
474 31 0.02
475 77 0.06
476 511 0.38
477 257 0.19
478 34 0.03
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (478 bp):
GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
CAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATT
GGGAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
GCTTTTCTTTCCACCGTTTTTGTTAAAATCAAAGTTTGTCTTTAAAATAAGACAAACATGAATAC
TCATACTATTCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACAT
GATATTGGTACTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTCC
GTGCCTCAAATGAAGACAAACATGGATTCTAGCAATTGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTCTCTTCAATAG
Found at i:1573336 original size:476 final size:472
Alignment explanation
Indices: 1572580--1573830 Score: 1523
Period size: 476 Copynumber: 2.6 Consensus size: 472
1572570 TTTTCCTTAC
* * * *
1572580 GATAAGTGATATTGATGATTTCCTTTTACACTAAATTCTTTTCTTTACCCTATTTTTCTTAAAAT
1 GATAAATGATATTGATGATTTTCTTTTGCA-TAAAATCTTTTCTTTACCCTATTTTTCTTAAAAT
* * * * * *
1572645 CAAAGTTCATCCTTTAAATAAAACAAGCGTCAATTCTCGTTACAGTCTCCATTATTTTCTAGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTC-AGATT
* * * * *
1572710 GGTAACCTAAAGCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCACAAGAAAA
129 GG-AACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
1572775 GCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGCCTCTAAAA-AAGGACAAACATTAATA
193 GCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGCCTCTAAAATAA-GACAAACA-TAATA
* * *
1572839 CTCATACTATTTCTCATTCTTTTCAAGATTAGGCACCATAAACGTAGT-TTTCTTATTAGGATAC
256 CTCATACTATTCCTCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTT-TCATTAGGATAC
* * * * * *
1572903 ATGATATTGGTACTTTGGTTTCGCAAGAAATGTTTTTTTCCCACCAATTTTTATAAAGTTTATGT
320 ATGATATTGGTACTTTGGTTTCGAAAGAAAGGCTTTTTCCCCACCAATTTTTATAAAGTCTAAGT
* * * * *
1572968 TCGTGCCTCAAATGAAGCGAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCAC
385 CCGTGCCTCAAATGAAGCAAAAATGGATTCTAGCAATGATCTTCATTCATGTTGAGATTAGGCAC
* *
1573033 TATAAACTCATTC-TCCTT-ATTAG
450 TATAAACACATTCAT--TTCAATAG
* * *
1573056 GCTAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTACCCT-TTCTTCCTTAAAA
1 GATAAATGATATTGATGATTTTCTTTTGCAT-AAAATCTTTTCTTTACCCTATT-TTTCTTAAAA
* *
1573120 T-ATAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTAGTAATAATCTCCATTCTTTTCACGA
64 TCA-AAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCA-GA
*
1573184 TTGTGAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCACGAA
127 TTG-GAACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * *
1573249 ATGCTTTTCTTTCTACCGTTTTTGT-TAAAATCAAAGTTTGTCTTTAAAATTAGACAAACATGAA
191 AAGCTTTTCTTTCCACCGTTTTT-TATAAAATCAAAGTTTGCCTCTAAAATAAGACAAACAT-AA
* * * * * *
1573313 TACTCATACTATTCC-CTATTCTTTTCAAGACTAGACAACTTAAACATAGTCTTTTCGTTGGGAT
254 TACTCATACTATTCCTC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCATTAGGAT
* *
1573377 ACATGATATTGGTGCTTTGGTTTCGAAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAA
318 ACATGATATTGGTACTTTGGTTTCGAAAGAAAGGCTTTTTCCCCACCAATTTTTATAAAGTCTAA
* * * * * *
1573442 GTCCGTGCCTTAAATGAGGCAAAAATGGATTCTCGTATTGATCTTCATTCATGTTGAGATTAGGT
383 GTCCGTGCCTCAAATGAAGCAAAAATGGATTCTAGCAATGATCTTCATTCATGTTGAGATTAGGC
*
1573507 ACTATAAACAGATTCATTTCAATAG
448 ACTATAAACACATTCATTTCAATAG
* * * *
1573532 GATAAGTGATATTGATGATTTTCTTTTTGCATAGAAATCTTTTCTTTGCACTATTTTTTTTTAAA
1 GATAAATGATATTGATGATTTTC-TTTTGCATA-AAATCTTTTCTTTACCCTA-TTTTTCTTAAA
* * * *
1573597 ATCAAAGTTCATCTCTTAAAATAAGATAAGCATCGATTCTCGTAACAATC-CCATTCTCTTCAAG
63 ATCAAAGTTCATCCCTT-AAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTC-AG
* *
1573661 ATTGGGAACCAAAAACACATTTCCATCATTA-AGATACATGACATTGATGCTTTGGTGTCGCAAG
126 ATT-GGAACCAAAAACACATTCCCTTCATTAGA-ATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * *
1573725 AAACGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGCCTCTCAAATAAGATAAACATAA
189 AAAAGCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGCCTCTAAAATAAGACAAACATAA
* * * * *
1573790 CTAGTCATACAAATCCTCATTCTTTTTAGGATTAGGCACCA
254 -TACTCATACTATTCCTCATTCTTTTCAAGATTAGGCACCA
1573831 CAAATAAGAC
Statistics
Matches: 660, Mismatches: 91, Indels: 46
0.83 0.11 0.06
Matches are distributed among these distances:
475 9 0.01
476 413 0.63
477 34 0.05
478 170 0.26
479 34 0.05
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (472 bp):
GATAAATGATATTGATGATTTTCTTTTGCATAAAATCTTTTCTTTACCCTATTTTTCTTAAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAGATTGG
AACCAAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
TTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGCCTCTAAAATAAGACAAACATAATACTCAT
ACTATTCCTCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCATTAGGATACATGATA
TTGGTACTTTGGTTTCGAAAGAAAGGCTTTTTCCCCACCAATTTTTATAAAGTCTAAGTCCGTGC
CTCAAATGAAGCAAAAATGGATTCTAGCAATGATCTTCATTCATGTTGAGATTAGGCACTATAAA
CACATTCATTTCAATAG
Found at i:1574758 original size:475 final size:477
Alignment explanation
Indices: 1573832--1574788 Score: 1203
Period size: 475 Copynumber: 2.0 Consensus size: 477
1573822 TAGGCACCAC
* * * * * *
1573832 AAATAAGACGAACATGATTCACTTATACTAAACCCCATTCTTTTTAGGATTAGGCACCATAAATG
1 AAATAAGACAAACATGAATCACTCATACTAAACCCCATTCTTTTCAGAATTAGACACCATAAATG
** * *
1573897 TAGTCTTCTCATTAGGATACACGATATTGATACTTTGGTTCCACAAAAAAGGCTTTTTCCCTACC
66 TAGTCTTCTCAAAAGGATACAAGATATTGATACTTTGGTTCCACAAAAAAGGCTTTTTCCCTACA
*
1573962 AATTTTTGTAAAGTTTAAATTCGTGCCACAAATGAGACAAACATGGATTCTAGGAATGATCTTCA
131 AATTTTTGTAAAGTCTAAATTCGTGCCACAAATGAGACAAACATGGATTCTAGGAATGATCTTCA
* ** *
1574027 TTTATTTTCTGATTAAGCACTATAAACACATTCTTTTTAGTAGGATAAGTGACACTGATAATTTT
196 TTCATTTTCTGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAGTGACACTGATAATTTT
* *
1574092 CTTTTGCATGAAAATCTTTTCTTTGCACTATTTTCCTTAAAATCAAAGTTCATCTCCTAAATAAG
261 CTTTTGCATGAAAATCTTTTCTTTACACTATTTTCCTTAAAATCAAAGTCCATCTCCTAAATAAG
* * * *
1574157 ACAAGCATCGATTCTCACAACAGTCCCTATTTTTTTCTAGCTTGGGAACCAAAAACAAATTCCCT
326 ACAAGCATAGATTCTCACAACAATCCCTATTTTTTTCAAGATTGGGAACCAAAAACAAATTCCCT
* * * *
1574222 ACATTAGGATACACGAGATTGATGCTTTGGTGCCGCAAAAAAAGGTTTTCTTCTAACTGTTTTTT
391 ACATTAGGATACACGACATTGATGCTTTGGTGCCGCAAAAAAAGCTTTTATTCTAACTGTTTTTG
1574287 ATAGAATCAAAGTTTGCCTCTT
456 ATAGAATCAAAGTTTGCCTCTT
* * *
1574309 AAATAAGACAAACATGAAT-AGTCATACTAATCCCCATTCTTTTCAGAATTAGACACCATAATTG
1 AAATAAGACAAACATGAATCACTCATACTAAACCCCATTCTTTTCAGAATTAGACACCATAAATG
* * * * * *
1574373 TAGTCTTCTCAAAAGGATACAAGATATTGA-AGCTTTGGTTTCGCAAGAAATGCTTTTTTCCTTC
66 TAGTCTTCTCAAAAGGATACAAGATATTGATA-CTTTGGTTCCACAAAAAAGGCTTTTTCCCTAC
** * ***
1574437 AAATTTTTGTAAAGTCTATGTTCGTGCC-CAAAT-AGGCCAAACATGGATTCTAGTTTTGATCTT
130 AAATTTTTGTAAAGTCTAAATTCGTGCCACAAATGA-GACAAACATGGATTCTAGGAATGATCTT
* * * * * *
1574500 CATTCATTTTGTGATTAGGCACTATCAACACATTCTCCTCATTAGGATTAA-TGATA-TCGATGA
194 CATTCATTTTCTGATTAAGCACTATAAACACATTCTCCTCAGTAGGA-TAAGTGACACT-GATAA
* * *
1574563 TTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTCCATC-CCTTAC
257 TTTTCTTTTGCATGAAAATCTTTTCTTTACACTATTTTCCTTAAAATCAAAGTCCATCTCC-TAA
* *** * * *
1574627 ATAAGATAAGCATAGATTCTTGTAACAATCTCC-ATTTTTTTCAAGATTGGGATCCAACAACAGA
321 ATAAGACAAGCATAGATTCTCACAACAATC-CCTATTTTTTTCAAGATTGGGAACCAAAAACAAA
* * * * * * *
1574691 TTCTCTTCATTAGGATACATGACATTGATGCTTTAGG-GTCGCAAGAAAAGCTTTTATTTTCACT
385 TTCCCTACATTAGGATACACGACATTGATGCTTT-GGTGCCGCAAAAAAAGCTTTTATTCTAACT
* *
1574755 GTTTTTGATAGAATCAAAGTTTGTCTGTT
449 GTTTTTGATAGAATCAAAGTTTGCCTCTT
1574784 AAATA
1 AAATA
1574789 TGGACACACG
Statistics
Matches: 408, Mismatches: 65, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
474 4 0.01
475 265 0.65
476 122 0.30
477 17 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (477 bp):
AAATAAGACAAACATGAATCACTCATACTAAACCCCATTCTTTTCAGAATTAGACACCATAAATG
TAGTCTTCTCAAAAGGATACAAGATATTGATACTTTGGTTCCACAAAAAAGGCTTTTTCCCTACA
AATTTTTGTAAAGTCTAAATTCGTGCCACAAATGAGACAAACATGGATTCTAGGAATGATCTTCA
TTCATTTTCTGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAGTGACACTGATAATTTT
CTTTTGCATGAAAATCTTTTCTTTACACTATTTTCCTTAAAATCAAAGTCCATCTCCTAAATAAG
ACAAGCATAGATTCTCACAACAATCCCTATTTTTTTCAAGATTGGGAACCAAAAACAAATTCCCT
ACATTAGGATACACGACATTGATGCTTTGGTGCCGCAAAAAAAGCTTTTATTCTAACTGTTTTTG
ATAGAATCAAAGTTTGCCTCTT
Found at i:1575144 original size:403 final size:403
Alignment explanation
Indices: 1574395--1575193 Score: 1101
Period size: 403 Copynumber: 2.0 Consensus size: 403
1574385 AAGGATACAA
* * * * * * *
1574395 GATATTGAAGCTTTGGTTTCGCAAGAAATGCTTTTTTCCTTCAAATTTTTGTAAAGTCTATGTTC
1 GATATTGAAGCTTTGGTTTCACAAGAAAGGCTTTTTCCCATCAAATTTTGGAAAAGTCTAAGTTC
* * *
1574460 GTGCCCAAATAGGCCAAACATGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTAT
66 CTGCCCAAATAGGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTACGCACTAT
* *
1574525 CAACACATTCTCCTCATTAGGATTAATGATATCGATGATTTTCTTTTGCATGGAAATCTTTTCTT
131 AAACACATTCTCCTCATTAGGATTAATGATATCGATGATTTTCTTTTGCATGGAAATCTTTTCCT
* * * **
1574590 TACCCTATTTTCCTTAAAATCAAAGTCCATCCCTTACATAAGATAAGCATAGATTCTTGTAACAA
196 TACACTATTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGACAAGCATAGATTCTCATAACAA
* * *
1574655 TCTCCATTTTTTTCAAGATTGGGATCCAACAACAGATTCTCTTCATTAGGATACATGACATTGAT
261 TCTCCATTTTTTTCAAGATTGGGAACCAAAAACAGATTCTCTTCATTAGGATACACGACATTGAT
* * *
1574720 GCTTTAGGGTCGCAAGAAAAGCTTTTATTTTCACTGTTTTTGATAGAATCAAAGTTTGTCTGTTA
326 GCTTTAGGGCCGCAAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTGTTA
1574785 AATATGGACACAC
391 AATATGGACACAC
* *
1574798 GATATTGATGCTTTGGTTTCACATGAAAGGCTTTCTTCCCAT-AAATTTTGGAAAAGTCTAAGTT
1 GATATTGAAGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCATCAAATTTTGGAAAAGTCTAAGTT
* **
1574862 CCTGTCTCAAAT-GAGCCAAATGTGGATTCTAGTATTGAT-TTCCATTCATTTTGTGATTACGCA
65 CCTG-CCCAAATAG-GCCAAACATGGATTCTAGTATTGATCTT-CATTCATTTTGTGATTACGCA
*
1574925 CTATAAACACATTCTCCTCATTAGGATTAATGATAAT-GATG-TTTTTTTTTGCATGGAAATCTT
127 CTATAAACACATTCTCCTCATTAGGATTAATGAT-ATCGATGATTTTCTTTTGCATGGAAATCTT
* * * * *
1574988 TTCCTTACACTATTTTTCTTAAACTGAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
191 TTCCTTACACTATTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGACAAGCATAGATTCTCAT
* * *
1575053 AACAGTC-CCTATTTTTTTCAAGTTTGGGAACCAAAAACATATTC-CTTTCATTAGGATACACGA
256 AACAATCTCC-ATTTTTTTCAAGATTGGGAACCAAAAACAGATTCTC-TTCATTAGGATACACGA
* * *
1575116 CGTTGATGCTTT-GGTGCCGCAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
319 CATTGATGCTTTAGG-GCCGCAAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTT
*
1575180 GTCTTTTAAATATG
383 GTCTGTTAAATATG
1575194 ACAAACATGA
Statistics
Matches: 347, Mismatches: 41, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
402 5 0.01
403 250 0.72
404 90 0.26
405 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (403 bp):
GATATTGAAGCTTTGGTTTCACAAGAAAGGCTTTTTCCCATCAAATTTTGGAAAAGTCTAAGTTC
CTGCCCAAATAGGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTACGCACTAT
AAACACATTCTCCTCATTAGGATTAATGATATCGATGATTTTCTTTTGCATGGAAATCTTTTCCT
TACACTATTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGACAAGCATAGATTCTCATAACAA
TCTCCATTTTTTTCAAGATTGGGAACCAAAAACAGATTCTCTTCATTAGGATACACGACATTGAT
GCTTTAGGGCCGCAAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTGTTA
AATATGGACACAC
Found at i:1575762 original size:13 final size:13
Alignment explanation
Indices: 1575744--1575800 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1575734 CATAAAGTGT
1575744 TGTATCGATACAA
1 TGTATCGATACAA
1575757 TGTATCGATACATAAA
1 TGTATCGATAC---AA
1575773 TGTTGTATCGATACAA
1 ---TGTATCGATACAA
1575789 TGTATCGATACA
1 TGTATCGATACA
1575801 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
16 4 0.11
19 11 0.29
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1575781 original size:19 final size:18
Alignment explanation
Indices: 1575721--1575819 Score: 83
Period size: 19 Copynumber: 5.8 Consensus size: 18
1575711 AATTTCAACG
1575721 ATTTGTATCGATACATAA
1 ATTTGTATCGATACATAA
1575739 AGTGTTGTATCGATAC---A
1 A-T-TTGTATCGATACATAA
1575756 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
1575772 ATGTTGTATCGATAC---A
1 AT-TTGTATCGATACATAA
1575788 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
1575804 GTTTTGTATCGATACA
1 -ATTTGTATCGATACA
1575820 ATGTAAGCTA
Statistics
Matches: 66, Mismatches: 1, Indels: 27
0.70 0.01 0.29
Matches are distributed among these distances:
13 22 0.33
16 5 0.08
17 2 0.03
18 1 0.02
19 24 0.36
20 12 0.18
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (18 bp):
ATTTGTATCGATACATAA
Found at i:1575782 original size:32 final size:32
Alignment explanation
Indices: 1575724--1575824 Score: 175
Period size: 32 Copynumber: 3.1 Consensus size: 32
1575714 TTCAACGATT
1575724 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAA-TGTTGTATCGATACAA
1575757 TGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
* *
1575789 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
1575821 TGTA
1 TGTA
1575825 AGCTACTGCC
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 50 0.76
33 16 0.24
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAATGTTGTATCGATACAA
Found at i:1575845 original size:65 final size:65
Alignment explanation
Indices: 1575724--1575852 Score: 156
Period size: 65 Copynumber: 2.0 Consensus size: 65
1575714 TTCAACGATT
* ***
1575724 TGTATCGATACATAAAGTGTTGTATCGATACAATGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAATGTATAGATACATAAAAAATGTATCGATACAA
* *
1575789 TGTATCGATACAT-AAGTTTTGTATCGATACAATGTA-AGCTAC-TGCCAAAAAATGTATCGATA
1 TGTATCGATACATAAAGTGTTGTATCGATACAATGTATAGATACAT---AAAAAATGTATCGATA
1575851 CA
63 CA
1575853 TTACTCAAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
62 1 0.02
63 4 0.07
64 22 0.40
65 28 0.51
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (65 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAATGTATAGATACATAAAAAATGTATCGATACAA
Found at i:1575924 original size:52 final size:52
Alignment explanation
Indices: 1575882--1576010 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
1575872 CACTGATCTT
1575882 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
1575934 TGTATCGATACATGCAGGCAAATTTGCCCATATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1575986 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1576011 TCATATTTCG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1579981 original size:130 final size:130
Alignment explanation
Indices: 1579746--1579994 Score: 315
Period size: 130 Copynumber: 1.9 Consensus size: 130
1579736 GGTGTTGCAG
* * * * * *
1579746 GAAAAGCTTTTCGTTCCACCGTTTTTGATATAATCAAAGTTTGCCTTTTAAATAAGACAAACATG
1 GAAAAGCTTTTCGTTCCACCATTTTTGATAAAATCAAAGTTTGCCTCTTAAAAAAAACAAACAAG
* * *
1579811 AATAGCCATATGAATCCCCATTCTTTTTGGGATTATGCACCATAAACGTAGTCTCTTGTTTTCAA
66 AATAGCCATATGAATCCCCAATCTTTTTAGGATTAGGCACCATAAACGTAGTCTCTTGTTTTCAA
* * * *
1579876 GAAAAGCTTTTCTTTCCACTATTTTAT-ATAAAATCAAAGTTTGTCTCTTAAAAAAAACAAATAA
1 GAAAAGCTTTTCGTTCCACCATTTT-TGATAAAATCAAAGTTTGCCTCTTAAAAAAAACAAACAA
* *
1579940 GAATA-CTCATACT-AATCCCTAATCTTTTTAGTATTAGGCACCATAAACGTAGTCT
65 GAATAGC-CATA-TGAATCCCCAATCTTTTTAGGATTAGGCACCATAAACGTAGTCT
1579995 TCTTAAAAGG
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
129 1 0.01
130 98 0.97
131 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (130 bp):
GAAAAGCTTTTCGTTCCACCATTTTTGATAAAATCAAAGTTTGCCTCTTAAAAAAAACAAACAAG
AATAGCCATATGAATCCCCAATCTTTTTAGGATTAGGCACCATAAACGTAGTCTCTTGTTTTCAA
Found at i:1581205 original size:403 final size:403
Alignment explanation
Indices: 1579995--1582827 Score: 3759
Period size: 403 Copynumber: 7.0 Consensus size: 403
1579985 AACGTAGTCT
* * *
1579995 TCTTAAA-A-GGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTTTGCTCACCAATT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CACAAATT
* * *** * * * *
1580058 TTTGTAAAGTCTAA-TAGCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGATTTTCTTTC
65 TTTGTAAAGTCTAAGT-TCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTC
* * ** * *
1580122 ATTTTGTGATTAGGCACTATAAACACATTCTCCT-CTTAAAGACTAA-TGATATTAATGATTTTC
129 ATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTT-AGGA-TAAGTGATATTGATGATTTTC
* * * * *
1580185 TTTTCCATGGAAATCTATTCTTTGCCTTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGA
192 TTTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * * * * * *
1580250 CAAGCATCGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGATCCAAAAACACAATCTCTT
257 CAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTT
* * * **
1580315 CATTAGGATACATGACATTGATGCTTTAGTGTTG-AAGAAAAGCATTTCTTTGCACTATTTTTGA
322 CTTTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
1580379 TAGAATCAAAGTTTGTC
387 TAGAATCAAAGTTTGTC
* * * *
1580396 TTTTTAATATGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTTTTCCCACAAATT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT-CCACAAATT
* * *
1580461 TTTGTAAAGTCCAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTGGTATTTATCCCCATTCA
65 TTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTCA
* * * * * *
1580526 TTTTGTGATTAGGTAGTATAAACACAATCTTTTCCATAGAATATGTGATATTGATGTTTTTTTTT
130 TTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATG--ATTTTCT
* **
1580591 TTTGCATGAAAATCTTTTCTTTACAC-TATTTTCCTTAAAATCAAAGTTCATCCCCTAAAGGAGA
193 TTTGCATGAAAATCTTTTCTTTAC-CTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * *
1580655 CAAGCATCTATTCTCATAATTGTCTCCATTATTTTCTAGATCGAGAACCTAAAACATATTCCCTT
257 CAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTT
* * *
1580720 CTTTAGGATACATGACATTGATGCTTCAGGGATGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
322 CTTTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
*
1580785 TAGAATCAAAATTTGTC
387 TAGAATCAAAGTTTGTC
* * * *
1580802 TCTTTAATATGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTTATCCAACAAATT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-ACAAATT
* *
1580867 TTTGTAAAGTCCAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCAATCA
65 TTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTCA
* * * *
1580932 TTTTGTGATTAGGTAGTATAAACACAATCTTTTCCTTAGGATAAATGATATTGACGGTTTT-TTT
130 TTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTT
* * *
1580996 GGCATGAAAATCTTTTCTTTACCTTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAGAAGACAA
195 TGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * * *
1581061 GCATCTATTCTCATAATTGTCTCCATTATTTTCTTGATCGGAAACCTAAATCACATTCCCTTCTT
260 GCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCTT
* ** * ** * *
1581126 TAAGATACATGACATTGATGCTTCGGCGTCACAAGAAAAACTTTTCTTTCCAGCGTTTTTGATAG
325 TAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
1581191 AATCAAAGTTTGTC
390 AATCAAAGTTTGTC
* * * * * *
1581205 TTTTAAATATGGATTCACGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCGTCCCACAACTT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACAAATT
* * * *
1581270 TTTGTAAAGTCTAAGTTCTTACCACAAATGAGCCAAATGTCGATTCTAGTATTTATCTCCATTCG
65 TTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTCA
* *
1581335 TTCTGTGATTAGGCAGTATAAACAAAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTT
130 TTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTT
*
1581400 TGCATGAAAATCTTTTCTTTACCTTATTTCCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
195 TGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
1581465 GCATCAATTCTCATAATAGTCTTCATTATTTTTTGGATTGGGAACCTAAAACACATTCCCTT-TA
260 GCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCT-
* * *
1581529 TTAGGATACATGTCATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCA-CATTTTTAATA
324 TTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
*
1581593 GAATCAAAGTTTGTT
389 GAATCAAAGTTTGTC
* * *
1581608 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAAGAAATGCTTTCTTTCCATAAATT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACAAATT
* * *
1581673 TTTGTAAAGTCTAAGTTCCTACCACAAATGAGCCAAATGTGGATTCTGGTATTCATCTCCATTCA
65 TTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTCA
* *
1581738 TTTTGTGATTAGGCAGTATAAATACAATCTTTTCCTTAGGATAAGTGATATCGATGATTTTCTTT
130 TTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTT
* * * * *
1581803 TGCATGAAAATTTTTTCTTTACCTTATTTCCCTTAAAATCAATGTTCATCCCTTAAATATGCCAA
195 TGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
1581868 GCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTT-TA
260 GCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCT-
* * * *
1581932 TTAGGATTCATGACATTGATGCTTTAGTGTCGCAAAAAAAGCTTTTGTTTCCACCGTTTTTGATA
324 TTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
*
1581997 GAATCAAAGTTTGTT
389 GAATCAAAGTTTGTC
* * * * *
1582012 TCTTAAATATGGATAAACGATGTTGATACTTTGGTTTTGCAAGAAATG-TTTTCTTCCCACAAAT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TT-CCACAAAT
* * * * *
1582076 TTTTGTAAAGTCTAGGTTCTTGCCACAAATGAGCCAAATGTGGATTCTGGTAATTATCTCTATTC
64 TTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTC
* * *
1582141 ATTTTGTGATTATGCAGTATAAACACAATCTTTTTCGTAGGATAAGTGAT-TTGATGATTTTCTT
129 ATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTT
* * * *
1582205 TTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTCAAATCAAAGTTCGTCCCTTAAATAAGATA
194 TTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
** * * * *
1582270 AGCATCGATTCTCATAATAACCTCCATTATTTTCTGGATTAGGAACCGAAAACACATTCCCTTCA
259 AGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCT
* * * * *
1582335 TTAGGATACATGACATTGATGTTTCTA-TGTTGTAAGAAAAGCTTTTGTTTCCACCATTTTTGAC
324 TTAGGATACATGACATTGATGCTT-TAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* *
1582399 AGAATCGAAGTTTTTC
388 AGAATCAAAGTTTGTC
* * * * * * *
1582415 TCTTAAATATGGAGACAAGGTATTTATTCTTTTGTTTTGCAAGAAAGGCTTTCTTTCCACAAATT
1 TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACAAATT
* * *
1582480 TTTGTAAAGTCTAAGTTCTTGCCGCAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCA
65 TTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTCA
* * *
1582545 TTTTTTGATTAGGCAGTCTAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTT
130 TTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTT
* * * * * *
1582610 TGCATTAAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCGAATTTCATCTCTTAAATAAGACAA
195 TGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * *
1582675 GCATCGATTCTCGTAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCTTTCAT
260 GCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCTT
* * *
1582740 TAGGATACATGACATCGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTGCACCGTTTTTGATAA
325 TAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
1582805 AATCAAAGTTTGTC
390 AATCAAAGTTTGTC
*
1582819 TCTAAAATA
1 TCTTAAATA
1582828 AGACAAACAT
Statistics
Matches: 2151, Mismatches: 257, Indels: 45
0.88 0.10 0.02
Matches are distributed among these distances:
401 5 0.00
402 5 0.00
403 1221 0.57
404 561 0.26
405 143 0.07
406 216 0.10
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (403 bp):
TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCACAAATTT
TTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCATTCAT
TTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTTT
GCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
CATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCTTT
AGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA
ATCAAAGTTTGTC
Found at i:1581830 original size:807 final size:805
Alignment explanation
Indices: 1579994--1582819 Score: 3826
Period size: 807 Copynumber: 3.5 Consensus size: 805
1579984 AAACGTAGTC
* * *
1579994 TTCTTAAA-A-GGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTTTGCTCACCAAT
1 TTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CACAAAT
* * *** * * *
1580057 TTTTGTAAAGTCTAA-TAGCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGATTTTCTTT
65 TTTTGTAAAGTCTAAGT-TCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATT-ATCTCCATT
* * ** * *
1580121 CATTTTGTGATTAGGCACTATAAACACATTCTCCT-CTTAAAGACTAA-TGATATTAATGATTTT
128 CATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTT-AGGA-TAAGTGATATTGATGATTTT
* * * * *
1580184 CTTTTCCATGGAAATCTATTCTTTGCCTTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAG
191 CTTTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * * * * * *
1580249 ACAAGCATCGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGATCCAAAAACACAATCTCT
256 ACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCT
* * * * **
1580314 TCATTAGGATACATGACATTGATGCTTTAGTGTTG-AAGAAAAGCATTTCTTTGCACTATTTTTG
321 TCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAACTTTTCTTTCCACCGTTTTTG
* * * *
1580378 ATAGAATCAAAGTTTGTCTTTTTAATATGGATACACGATATTGATGTTTTGGTTTCACAAGAAAG
386 ATAGAATCAAAGTTTGTCTTTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAT
* * *
1580443 GCTTTTTTCCCACAAATTTTTGTAAAGTCCAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCT
451 GCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCT
* * * *
1580508 GGTATTTATCCCCATTCATTTTGTGATTAGGTAGTATAAACACAATCTTTTCCATAGAATATGTG
516 GGTATTTATCTCCATTCATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCATAGGATAAGTG
* *
1580573 ATATTGATGTTTTTTTTTTTTGCATGAAAATCTTTTCTTTACACTATTTTCCTTAAAATCAAAGT
581 ATATTGATG--ATTTTCTTTTGCATGAAAATCTTTTCTTTAC-CTATTTTCCTTAAAATCAAAGT
* ** * * * * *
1580638 TCATCCCCTAAAGGAGACAAGCATCTATTCTCATAATTGTCTCCATTATTTTCTAGATCGAGAAC
643 TCATCCCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTATTTTCTGGATTGGGAAC
* * * *
1580703 CTAAAACATATTCCCTTCT-TTAGGATACATGACATTGATGCTTCAGGGATGCAAGAAAAGCTTT
708 CTAAAACACATTCCCTT-TATTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTT
* *
1580767 TCTTTCCACCGTTTTTGATAGAATCAAAATTTGT
772 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * *
1580801 CTCTTTAATATGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTTATCCAACAAAT
1 TTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-ACAAAT
* *
1580866 TTTTGTAAAGTCCAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTTATCTCCAATC
65 TTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTA-TTATCTCCATTC
* * * *
1580931 ATTTTGTGATTAGGTAGTATAAACACAATCTTTTCCTTAGGATAAATGATATTGACGGTTTT-TT
129 ATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTT
* * *
1580995 TGGCATGAAAATCTTTTCTTTACCTTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAGAAGACA
194 TTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * * * *
1581060 AGCATCTATTCTCATAATTGTCTCCATTATTTTCTTGATCGGAAACCTAAATCACATTCCCTTCT
259 AGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCA
* ** * * *
1581125 TTAAGATACATGACATTGATGCTTCGGCGTCACAAGAAAAACTTTTCTTTCCAGCGTTTTTGATA
324 TTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAACTTTTCTTTCCACCGTTTTTGATA
*
1581190 GAATCAAAGTTTGTCTTTTAAATATGGATTCACGATATTGATGCTTTGGTTTCGCAAGAAATGCT
389 GAATCAAAGTTTGTCTTTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATGCT
* * * * *
1581255 TTCGTCCCACAACTTTTTGTAAAGTCTAAGTTCTTACCACAAATGAGCCAAATGTCGATTCTAGT
454 TTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTGGT
* * * *
1581320 ATTTATCTCCATTCGTTCTGTGATTAGGCAGTATAAACAAAATCTTTTCCTTAGGATAAGTGATA
519 ATTTATCTCCATTCATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCATAGGATAAGTGATA
*
1581385 TTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTCCCTTAAAATCAAAGTTCATC
584 TTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACC-TATTTTCCTTAAAATCAAAGTTCATC
* *
1581450 CCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTTCATTATTTTTTGGATTGGGAACCTAAA
648 CCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAA
*
1581515 ACACATTCCCTTTATTAGGATACATGTCATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTC
713 ACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTC
*
1581580 CA-CATTTTTAATAGAATCAAAGTTTGT
778 CACCATTTTTGATAGAATCAAAGTTTGT
* * *
1581607 TTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAAGAAATGCTTTCTTTCCATAAAT
1 TTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACAAAT
* *
1581672 TTTTGTAAAGTCTAAGTTCCTACCACAAATGAGCCAAATGTGGATTCTGGTATTCATCTCCATTC
65 TTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATT-ATCTCCATTC
* *
1581737 ATTTTGTGATTAGGCAGTATAAATACAATCTTTTCCTTAGGATAAGTGATATCGATGATTTTCTT
129 ATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTT
* * * * *
1581802 TTGCATGAAAATTTTTTCTTTACCTTATTTCCCTTAAAATCAATGTTCATCCCTTAAATATGCCA
194 TTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
*
1581867 AGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTTA
259 AGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCA
* *
1581932 TTAGGATTCATGACATTGATGCTTTAGTGTCGCAA-AAAAAGCTTTTGTTTCCACCGTTTTTGAT
324 TTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAA-CTTTTCTTTCCACCGTTTTTGAT
* * * *
1581996 AGAATCAAAGTTTGT-TTCTTAAATATGGATAAACGATGTTGATACTTTGGTTTTGCAAGAAATG
388 AGAATCAAAGTTTGTCTT-TTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
* *
1582060 TTTTCTTCCCACAAATTTTTGTAAAGTCTAGGTTCTTGCCACAAATGAGCCAAATGTGGATTCTG
452 CTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTG
* * * * *
1582125 GTAATTATCTCTATTCATTTTGTGATTATGCAGTATAAACACAATCTTTTTCGTAGGATAAGTGA
517 GTATTTATCTCCATTCATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCATAGGATAAGTGA
* *
1582190 T-TTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTCAAATCAAAGTTCG
582 TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTA-CCTATTTTCCTTAAAATCAAAGTTCA
* * ** * *
1582254 TCCCTTAAATAAGATAAGCATCGATTCTCATAATAACCTCCATTATTTTCTGGATTAGGAACCGA
646 TCCCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTATTTTCTGGATTGGGAACCTA
* * * *
1582319 AAACACATTCCCTTCATTAGGATACATGACATTGATGTTTCTA-TGTTGTAAGAAAAGCTTTTGT
711 AAACACATTCCCTTTATTAGGATACATGACATTGATGCTT-TAGTGTTGCAAGAAAAGCTTTTCT
* *
1582383 TTCCACCATTTTTGACAGAATCGAAGTTT-T
775 TTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * * * *
1582413 TCTCTTAAATATGGAGACAAGGTATTTATTCTTTTGTTTTGCAAGAAAGGCTTTCTTTCCACAAA
1 T-TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACAAA
* *
1582478 TTTTTGTAAAGTCTAAGTTCTTGCCGCAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATT
64 TTTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTA-TTATCTCCATT
* * *
1582543 CATTTTTTGATTAGGCAGTCTAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCT
128 CATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCT
* * * * * *
1582608 TTTGCATTAAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCGAATTTCATCTCTTAAATAAGAC
193 TTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* *
1582673 AAGCATCGATTCTCGTAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCTTTC
258 AAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTC
* * * *
1582738 ATTAGGATACATGACATCGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTGCACCGTTTTTGAT
323 ATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAACTTTTCTTTCCACCGTTTTTGAT
*
1582803 AAAATCAAAGTTTGTCT
388 AGAATCAAAGTTTGTCT
1582820 CTAAAATAAG
Statistics
Matches: 1771, Mismatches: 226, Indels: 43
0.87 0.11 0.02
Matches are distributed among these distances:
805 2 0.00
806 374 0.21
807 896 0.51
808 146 0.08
809 347 0.20
810 6 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (805 bp):
TTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCACAAATT
TTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTATTATCTCCATTCAT
TTTGTGATTAGGCAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTTT
GCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
CATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCATT
AGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAACTTTTCTTTCCACCGTTTTTGATAGA
ATCAAAGTTTGTCTTTTAAATATGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATGCTTT
CTTCCCACAAATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTGGTAT
TTATCTCCATTCATTTTGTGATTAGGCAGTATAAACACAATCTTTTCCATAGGATAAGTGATATT
GATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTATTTTCCTTAAAATCAAAGTTCATCCCT
TAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACA
CATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGT
Found at i:1584209 original size:403 final size:400
Alignment explanation
Indices: 1583408--1584209 Score: 936
Period size: 403 Copynumber: 2.0 Consensus size: 400
1583398 GGTTTTGCAA
* * * * *
1583408 GAAAGGCTTTTTCCCACCAATTTTTCTAAACGCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
1 GAAAGGCTTTTTCCCACAAAATTTTCTAAACGCTAAGTTCCTGCCACAAATGAGACAAACATAGA
** * *
1583473 TTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATGACAGATTCTTTTCAATAGATAAA
66 TTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTATAACAGAATCTTTTCAATAGATAAA
* *
1583538 TGATTTTGATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCACTATTTTCCTTAAAAACAAAGT
131 TGATATTGATGATTTTCTTTTGCATGAAAATCTTTTTTTTGCACTATTTTCCTTAAAAACAAAGT
* * * *
1583603 TTATCTCTTAAATAAGATAAGCATCAATTCTCATACAATCCCCATGCTTTTCAGGATTGGGATCC
196 TTATCCCTTAAATAAGATAAGCATCAATTCTCATACAATCCCCATGATTTTCAGGATTAGGAACC
* * * *
1583668 AAAAAAACATTCCCTTTATTAGGATACATGACATTGTTGCTTTGGTGTTGCAAGAAAAGCTTTTC
261 AAAAAAACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTC
* * * * * * ** **
1583733 TTTACGCCTTTTTTGATAGAATCAAAGTTTTTCTCTTAAAGATAGATACACGATATTGATGTTTT
326 TTTACACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAGATAGACAAACGATAATGATCATAC
*
1583798 TGTTTTCCAG
391 TATTTTCCAG
* * * **
1583808 GAAAGGCTTTTTTCCCATAAAATTTTGTAAA-GTCTAAGTTCCTGCCACAAATGAGCCAAATGTA
1 GAAAGGC-TTTTTCCCACAAAATTTTCTAAACG-CTAAGTTCCTGCCACAAATGAGACAAACATA
* * * * **
1583872 GATTCTAGTACTTATCTCCATTCATTTTGTGATTAGGCAGTATAAACTGAATCTTTTCCTTAGGA
64 GATTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTAT-AACAGAATCTTTTCAATA-GA
* * *
1583937 TAAGTGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTTTTTGC-CTTATTTTCCTTAAAATC
127 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTTTTTGCAC-TATTTTCCTTAAAAAC
* * * * *
1584001 AAA-TTTCATCCCTTAAATAAGATAGGCATCGATTCTCATAACAGTCTCCATTATTTTCTA-GAT
191 AAAGTTT-ATCCCTTAAATAAGATAAGCATCAATTCTCAT-ACAATCCCCATGATTTTC-AGGAT
* * * *
1584064 TAGGAACCTAAAATACATTCCCTTCATTAGGATACCTTACATTGATGCTTTGGTGTCGCAAGAAA
253 TAGGAACCAAAAAAACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * *
1584129 AACTTTTCTTTCCATCGTTTTTGGTAGAATCGAAGTTTGTCTC-TAAA-ATACGACAAAC-ATAA
318 AACTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAGATA-GACAAACGAT-A
1584191 AT-ACTCATACTATTTTCCA
381 ATGA-TCATACTATTTTCCA
1584210 TTCCTTTCAA
Statistics
Matches: 334, Mismatches: 57, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
400 8 0.02
401 82 0.25
402 23 0.07
403 112 0.34
404 108 0.32
405 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (400 bp):
GAAAGGCTTTTTCCCACAAAATTTTCTAAACGCTAAGTTCCTGCCACAAATGAGACAAACATAGA
TTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTATAACAGAATCTTTTCAATAGATAAA
TGATATTGATGATTTTCTTTTGCATGAAAATCTTTTTTTTGCACTATTTTCCTTAAAAACAAAGT
TTATCCCTTAAATAAGATAAGCATCAATTCTCATACAATCCCCATGATTTTCAGGATTAGGAACC
AAAAAAACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTC
TTTACACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAGATAGACAAACGATAATGATCATAC
TATTTTCCAG
Found at i:1584701 original size:475 final size:470
Alignment explanation
Indices: 1583828--1585114 Score: 1436
Period size: 475 Copynumber: 2.7 Consensus size: 470
1583818 TTTCCCATAA
* * ** * * * *
1583828 AATTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTAGATTCTAGTACTTATCTCCAT
1 AATTTTGTAAAGTCTAAGTTCATGCCACAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * **
1583893 TCATTTTGTGATTAGGCAGTATAAACTGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTC
66 TCATTTTGTGATTAGGCACTA-AAA-AGAATCTTTTCAATAGGATAAGTGATATTGATGATTTTC
* * *
1583958 TTTTGCTTGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAA-TTTCATCCCTTAAATAAG
129 TTTTGCATGGAAATCTTTTATTTGCC-TATTTTCCTTAAAATCAAAGTTT-ATCCCTTAAATAAG
** *
1584022 ATAGGCATCGATTCTCATAACAGTCTCCATTATTTTCTAGATTAGGAACCTAAAATACATTCCCT
192 ATAAACATCGATTCTCATAACAGTCTCCATTATTTTCTAGATTAGGAACCTAAAACACATTCCCT
* * * *
1584087 TCATTAGGATAC-CTTACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTCTTTCCATCGTTTTT
257 TCATTAGGATGCAC-GACA-TGATACCTTGGTGTCGCAAGAAAAACTTTTCTTTCCATCGTTTTT
* * ** * * * **
1584151 GGTAGAATCGAAGTTTGTCTCTAAAATACGACAAACATAAATACTCATACTATTTTCCATTCCTT
320 GATAGAATCAAAGTTTACCTCTAAAATAAGACAAACATAAATACTCATACGAATCCCCATTCCTT
* * ***
1584216 TCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGGTGCTTTGGTTCCG
385 TCAAGATTAGGCACCATAAACATAGTCCTCTCATTAGGATA-ACGATATTGACACTTTGGTTCCG
* *
1584281 CAAGAAAGGTTCTTTTCCC-ACC
449 CAAGAAACGCT-TTTTCCCTACC
* *
1584303 AATTTATGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
1 AATTT-TGTAAAGTCTAAGTTCATGCCACAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * * * * * * *
1584368 TTCACTTTGTGATTAGGCACCACGATAGATTCTTTTCAATAGGATAAATGGTTTTGATGATTTTC
65 TTCATTTTGTGATTAGGCACTA-AAAAGAATCTTTTCAATAGGATAAGTGATATTGATGATTTTC
* *
1584433 TTTTGCATGGAAATCTTTTCTTTGCACTATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGA
129 TTTTGCATGGAAATCTTTTATTTGC-CTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGA
* * * ** * * *
1584498 TAAACATCGATTCTCGTAGA-AATCCCCATGCTTTTCAAGATTAGGATCCAAAAACACATTCCCT
193 TAAACATCGATTCTCATA-ACAGTCTCCATTATTTTCTAGATTAGGAACCTAAAACACATTCCCT
* * * * *
1584562 TGATTAGGATGCACGACATGGATACCTTGGTGTCGCATGAAAACCTTTTCTTTCCATCATTTTTT
257 TCATTAGGATGCACGACAT-GATACCTTGGTGTCGCAAGAAAAACTTTTCTTTCCATCGTTTTTG
* * * * * *
1584627 ATAGAATCAAAGTTTACCTCTCAATTAAGACAAAGATGAATAGTCATACGAATCCCCATTCTTTT
321 ATAGAATCAAAGTTTACCTCTAAAATAAGACAAACATAAATACTCATACGAATCCCCATTCCTTT
* * * * *
1584692 TAGGATTAGGCACCATAAACGTAGTCCTCTCATTAGGATAACGATGTTGACACTTTGGTTCTGCA
386 CAAGATTAGGCACCATAAACATAGTCCTCTCATTAGGATAACGATATTGACACTTTGGTTCCGCA
*
1584757 AGAAACGCTTTTTCCCTATC
451 AGAAACGCTTTTTCCCTACC
* *
1584777 AATTTTTGTAAAGTCTAAGTTCATGGCACAAATGATACAAACATGGATTCTAAG-AATGATCTTC
1 AA-TTTTGTAAAGTCTAAGTTCATGCCACAAATGAGACAAACATGGATTCT-AGTAATGATCTTC
* * * * * * *
1584841 ATTCATTTTTTGATTAGACTCTAAACACAATGTTTTCAATCGGATAAGTGATATTGATGATTTTC
64 ATTCATTTTGTGATTAGGCACTAAAAAGAATCTTTTCAATAGGATAAGTGATATTGATGATTTTC
** * * * *
1584906 TTTT-CTATGGACTTCTTTTATTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATGAG
129 TTTTGC-ATGGAAATCTTTTATTT-GCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAG
* * * * * * *
1584970 ACAATCATCTATTTTCATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCCCT
192 ATAAACATCGATTCTCATAACAGTCTCCATTATTTTCTAGATTAGGAACCTAAAACACATTCCCT
* * * * *
1585035 TCATTAGGATGCATGACATTA-ACGCTTCGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
257 TCATTAGGATGCACGACATGATAC-CTT-GGTGTCGCAAGAAAAACTTTTCTTTCCATCGTTTTT
1585099 GATAGAATCAAAGTTT
320 GATAGAATCAAAGTTT
1585115 GTATCTTAAA
Statistics
Matches: 675, Mismatches: 123, Indels: 30
0.82 0.15 0.04
Matches are distributed among these distances:
471 2 0.00
472 6 0.01
473 204 0.30
474 102 0.15
475 285 0.42
476 76 0.11
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (470 bp):
AATTTTGTAAAGTCTAAGTTCATGCCACAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
TCATTTTGTGATTAGGCACTAAAAAGAATCTTTTCAATAGGATAAGTGATATTGATGATTTTCTT
TTGCATGGAAATCTTTTATTTGCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGATAA
ACATCGATTCTCATAACAGTCTCCATTATTTTCTAGATTAGGAACCTAAAACACATTCCCTTCAT
TAGGATGCACGACATGATACCTTGGTGTCGCAAGAAAAACTTTTCTTTCCATCGTTTTTGATAGA
ATCAAAGTTTACCTCTAAAATAAGACAAACATAAATACTCATACGAATCCCCATTCCTTTCAAGA
TTAGGCACCATAAACATAGTCCTCTCATTAGGATAACGATATTGACACTTTGGTTCCGCAAGAAA
CGCTTTTTCCCTACC
Found at i:1585629 original size:403 final size:404
Alignment explanation
Indices: 1584777--1586313 Score: 2018
Period size: 403 Copynumber: 3.8 Consensus size: 404
1584767 TTTCCCTATC
* * ** ** * * *
1584777 AATTTTTGTAAAGTCTAAGTTCATGGCACAAATGATACAAACATGGATTCTAAG-AATGATCTTC
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCT-AGTACTTATCTCC
* * * * ** *
1584841 ATTCATTTTTTGATTA-G-ACTCTAAACACAATGTTTTCAATCGGATAAGTGATATTGATGATTT
65 ATTCATTTTGTGATTAGGTAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTT
* ** * * *
1584904 TCTTTT-CTATGGACTTCTTTTATTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATG
130 TCTTTTGC-ATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * *
1584968 AGACAATCATCTATTTTCATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCC
194 AAACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCC
* * * *
1585033 CTTCATTAGGATGCATGACATTAACGCTTCGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT
259 CTTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * *
1585098 TGATAGAATCAAAGTTTGTATCTTAAATATGGATACACGATATTGATGGTTTGGTTTCGTAAGAA
324 TGATAGAATCAAAGTTTGTTTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGAA
1585163 ATGCTTTCTTCCCACA
389 ATGCTTTCTTCCCACA
* * *
1585179 AATTTTTGTAAAGTCTAAGTTCTTGCAACAAATGAGCCAAATGTGGATCCTAGTACTTTTCTCCA
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
* * *
1585244 TTCGTTTTGTGATTAGG-CGTATAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
66 TTCATTTTGTGATTAGGTAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
* * * * * *
1585308 CTTTTACGTGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCACCCCTCAAATAAA
131 CTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
* * * *
1585373 AGAAGCATCGATTCTCGTAATAGTCTCGATTATTTTCTAGATTGGTAACCTAAAACACATTCCCT
196 ACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCT
* **
1585438 TCATTAGGATGCATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
261 TCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
*
1585503 ATAGAATCAAAGTTTGTTTCTTAAATATGGATACATGATATTGATGCTTTGGTTTCGTAGGAAAT
326 ATAGAATCAAAGTTTGTTTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGAAAT
1585568 GCTTTCTTCCCACA
391 GCTTTCTTCCCACA
* * * *
1585582 ATTTTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTAGTTATCCCCA
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
* * *
1585647 TTCATTCTGTGATTAGGTAGTACAAACACAATCTTTTTCC-TAGGATAAGTGCT-TTGATGATTT
66 TTCATTTTGTGATTAGGTAGTATAAACACAATC-TTTTCCTTAGGATAAGTGATATTGATGATTT
* * *
1585710 TCTTTTGCATG-AAATCTGTTCTATACCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAA
130 TCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * ** *
1585774 GACAAGCATCGATTCTTATAGTAACCTCCATTATTTTCTGGATTGGGAA-CTGAAAACACATTCC
195 AACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCT-AAAACACATTCC
* *
1585838 CTTCATTAGGATACGTGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTT
259 CTTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * ***
1585903 TGATAGAATCCAAGTTT-TTCTCTTAAATATGGATACACGATATTGATGCTTTTGTTTTACAGGA
324 TGATAGAATCAAAGTTTGTT-TCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGA
*
1585967 AAGGCTTTCTTCCCACA
388 AATGCTTTCTTCCCACA
*
1585984 AATTTTTGTAAAGTCTAAGTTCTTACCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
* *
1586049 TTCATTTTCTGATTAGGTAGTATAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
66 TTCATTTTGTGATTAGGTAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
* * * * *
1586114 CTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAATTTCATTCCTTAAA-AAA
131 CTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
* *
1586178 GACAAGCATCG------AT--T--TCTCCATTATTTTCAAGGTTGGGAACCTAAAACACATTCCC
196 -ACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCC
* * * * *
1586233 TTCATTAGGATACATGACAATGATGCTTTGGCGTCGCAAGAGAAGCTTTTCTTTCCACCCTTTTT
260 TTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* *
1586298 GAAAGAATTAAAGTTT
325 GATAGAATCAAAGTTT
1586314 ATCTCTAAAA
Statistics
Matches: 995, Mismatches: 128, Indels: 32
0.86 0.11 0.03
Matches are distributed among these distances:
394 105 0.11
395 2 0.00
396 1 0.00
398 2 0.00
401 12 0.01
402 392 0.39
403 398 0.40
404 77 0.08
405 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (404 bp):
AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
TTCATTTTGTGATTAGGTAGTATAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
CTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
ACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
ATAGAATCAAAGTTTGTTTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGAAAT
GCTTTCTTCCCACA
Found at i:1585929 original size:402 final size:402
Alignment explanation
Indices: 1584777--1586325 Score: 2004
Period size: 402 Copynumber: 3.9 Consensus size: 402
1584767 TTTCCCTATC
* * ** ** * * *
1584777 AATTTTTGTAAAGTCTAAGTTCATGGCACAAATGATACAAACATGGATTCTAAG-AATGATCTTC
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCT-AGTACTTATCTCC
* * * ** *
1584841 ATTCATTTTTTGATTA-GACT-CTAAACACAATGTTTTCAATCGGATAAGTGATATTGATGATTT
65 ATTCATTTTGTGATTAGGAGTAC-AAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTT
* ** * *
1584904 TCTTTT-CTATGGACTTCTTTTATTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATG
129 TCTTTTGC-ATGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA
* *
1584968 AGACAATCATCTATTTTCATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCC
193 AGACAAGCATCGATTTT-ATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCC
* * * *
1585033 CTTCATTAGGATGCATGACATTAACGCTTCGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTT
257 CTTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * * *
1585098 TGATAGAATCAAAGTTTGTATCTTAAATATGGATACACGATATTGATGGTTTGGTTTCGTAAGAA
322 TGATAGAATCAAAGTTTTTCTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGAA
1585163 ATGCTTTCTTCCCACA
387 ATGCTTTCTTCCCACA
* * *
1585179 AATTTTTGTAAAGTCTAAGTTCTTGCAACAAATGAGCCAAATGTGGATCCTAGTACTTTTCTCCA
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
* * * *
1585244 TTCGTTTTGTGATTAGGCGTATAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTC
66 TTCATTTTGTGATTAGGAGTACAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTC
* * * * * * * *
1585309 TTTTACGTGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCACCCCTCAAATAAAA
131 TTTTGCATGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGA
* ** * * *
1585374 GAAGCATCGATTCTCGTAATAGTCTCGATTATTTTCTAGATTGGTAACCTAAAACACATTCCCTT
196 CAAGCATCGATT-TTATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCCCTT
* **
1585439 CATTAGGATGCATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
260 CATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
*
1585504 TAGAATCAAAGTTTGTT-TCTTAAATATGGATACATGATATTGATGCTTTGGTTTCGTAGGAAAT
325 TAGAATCAAAGTTT-TTCTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGAAAT
1585568 GCTTTCTTCCCACA
389 GCTTTCTTCCCACA
* * * *
1585582 ATTTTTTGTAAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTAGTAGTTATCCCCA
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
* *
1585647 TTCATTCTGTGATTAGGTAGTACAAACACAATCTTTTTCC-TAGGATAAGTGCT-TTGATGATTT
66 TTCATTTTGTGATTAGG-AGTACAAACACAATC-TTTTCCTTAGGATAAGTGATATTGATGATTT
* *
1585710 TCTTTTGCATG-AAATCTGTTCTATACCCTATTTT-TCTTAAAATCAAAGTTCATCCCTTAAATA
129 TCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCT-TTAAAATCAAAGTTCATCCCTTAAATA
* **
1585773 AGACAAGCATCGATTCTTATAGTAACCTCCATTATTTTCTGGATTGGGAA-CTGAAAACACATTC
193 AGACAAGCATCGATT-TTATAATAGTCTCCATTATTTTCTGGATTGGGAACCT-AAAACACATTC
* *
1585837 CCTTCATTAGGATACGTGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTT
256 CCTTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTT
* * ***
1585902 TTGATAGAATCCAAGTTTTTCTCTTAAATATGGATACACGATATTGATGCTTTTGTTTTACAGGA
321 TTGATAGAATCAAAGTTTTTCTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGA
*
1585967 AAGGCTTTCTTCCCACA
386 AATGCTTTCTTCCCACA
*
1585984 AATTTTTGTAAAGTCTAAGTTCTTACCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
1 AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
* * *
1586049 TTCATTTTCTGATTAGGTAGTATAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
66 TTCATTTTGTGATTAGG-AGTACAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTT
* * * * *
1586114 CTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAATTTCATTCCTTAAAAAAG
130 CTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAG
*
1586179 ACAAGCATCG-----AT--T--TCTCCATTATTTTCAAGG-TTGGGAACCTAAAACACATTCCCT
195 ACAAGCATCGATTTTATAATAGTCTCCATTATTTTC-TGGATTGGGAACCTAAAACACATTCCCT
* * * * *
1586234 TCATTAGGATACATGACAATGATGCTTTGGCGTCGCAAGAGAAGCTTTTCTTTCCACCCTTTTTG
259 TCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * *
1586299 AAAGAATTAAAGTTTATCTCTAAAATA
324 ATAGAATCAAAGTTTTTCTCTTAAATA
1586326 AGACAAACAT
Statistics
Matches: 1004, Mismatches: 126, Indels: 42
0.86 0.11 0.04
Matches are distributed among these distances:
394 114 0.11
395 4 0.00
396 1 0.00
398 2 0.00
401 12 0.01
402 391 0.39
403 391 0.39
404 82 0.08
405 7 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (402 bp):
AATTTTTGTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCA
TTCATTTTGTGATTAGGAGTACAAACACAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTC
TTTTGCATGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGA
CAAGCATCGATTTTATAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
AGAATCAAAGTTTTTCTCTTAAATATGGATACACGATATTGATGCTTTGGTTTCGTAGGAAATGC
TTTCTTCCCACA
Found at i:1587275 original size:477 final size:475
Alignment explanation
Indices: 1585933--1587782 Score: 2101
Period size: 477 Copynumber: 3.9 Consensus size: 475
1585923 TCTTAAATAT
* * * ** * * * *
1585933 GGATACACGATATTGATGCTTTTGTTTTACAGGAAAGGCTTTCTTCCCACAAATTTTTGTAAAGT
1 GGATACATGATATTGGTGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCACCAATTTTTCTAAAGT
* * ** ** * *** *
1585998 CTAAGTTCTTACCACAAATGAGCCAAATGTGGATTCTAGTACTT-ATCTCCATTCATTTTCTGAT
66 CTAAGTTCGTGCTTCAAATGAG-CAAACATGGATTCTACTA-TTGATCTTTTTTCATTTTGTGAT
* * * * ** ** * *
1586062 TAGGTAGTATAAACAGAATCTTTTCCTTAGGATAAGTGATATTGATGATTTTCTTTTGCATGAAA
129 TAGGCACTATAAACACATTCTCCTCAATAGGATAAATGGTATTGATGATTTTCTTTTGCATGAAA
* * * * * *
1586127 ATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAATTTCATTCCTTAAAAAAGACAAGCATCGA--
194 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCCATT
** * * *
1586190 -T--T-----TCTCCATTATTTTCAAGGTTGGGAACCTAAAACACATTCCCTTCATTAGGATACA
259 CTAGTAACAATCTCCATTCCTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGACACA
* * * * * *
1586247 TGACAATGATGCTTTGGCGTCGCAAGAGAAGCTTTTCTTTCCACCCTTTTTGAAAGAATTAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* *
1586312 TTATCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTACACAC
389 TTGTCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTACGCAC
1586377 CATAAACATAGTCTTCTTATTA
454 CATAAACATAGTCTTCTTATTA
* * *
1586399 AGATACATGATATTGGTGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGT
1 GGATACATGATATTGGTGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCACCAATTTTTCTAAAGT
* * * *
1586464 CTAAGTTCGGGCCTCAAATGAGCTAACATGGATTC--C-ATT-ATCTTTTTTCATTTTGAGATTA
66 CTAAGTTCGTGCTTCAAATGAGCAAACATGGATTCTACTATTGATCTTTTTTCATTTTGTGATTA
*
1586525 GGCACTATAAACACATTCTCCTCATTAGGATAAATGAG-ATTGATGA-TTT-TTTTGCATGAAAA
131 GGCACTATAAACACATTCTCCTCAATAGGATAAATG-GTATTGATGATTTTCTTTTGCATGAAAA
* * *
1586587 TCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTAAATAGGACAAGC-TCCATTC
195 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCCATTC
* ** * *
1586651 TAGTAATAATCTATATT-CTTCCCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGACATA
260 TAGTAACAATCTCCATTCCTT-TCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGACACA
* * * * * * * *
1586715 AGGCATTGAAGCTTTGGTGTCACAACAATAGCTTTTCTTTCCGCCGTTTTTGATAGAGTCAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* *
1586780 TTGTCTCTAAAATAAGACAAACATGAATGCTCATACTATTCCCCATTCTTTTCAAGATTATGCAC
389 TTGTCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTACGCAC
*
1586845 CATAAACATAGTTTTCTTATTA
454 CATAAACATAGTCTTCTTATTA
* * * * *
1586867 GGATACA-CAGTATTGTTGCTTTGGTTCCACAAGAAAGGGTTTTTTCCTACCAATTTTTTTAAAG
1 GGATACATGA-TATTGGTGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCACCAATTTTTCTAAAG
* * * *
1586931 TCTAGGTTCATGCTTGAAATGAGCCAAACATGGATTCTACTATTGATTTTTTTTTCATTTTGTGA
65 TCTAAGTTCGTGCTTCAAATGAG-CAAACATGGATTCTACTATTGA-TCTTTTTTCATTTTGTGA
* ** *
1586996 TTAGGCACTATAAACACATTCTCCTCAATAAGATTGATGGTATTGATGATTTTCTTTTCCATGAA
128 TTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGGTATTGATGATTTTCTTTTGCATGAA
* * * * *
1587061 TATCGTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAGGACAAGCATCCAT
193 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCCAT
*
1587126 TCTAGTAACAATCTCCATTCCTTTCAAGATTGGGAACCTAAAACATATTCCCTTCATTAAGACAC
258 TCTAGTAACAATCTCCATTCCTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGACAC
*
1587191 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTCATAGAATCAAAG
323 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * *
1587256 TTTGTCTCTAAAATAAGACAAACATGAATACTCATACTATTTCTCATTCTTTTCAAGATTAGGCA
388 TTTGTCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTACGCA
*
1587321 CCATAAACATAGTCTTCGTATTA
453 CCATAAACATAGTCTTCTTATTA
* * *
1587344 GGATACATGATATTGGTGCTTTGGTTCCGCAAGAGAGGCCTTTTTCCCACCAATTTTTCTAAAGT
1 GGATACATGATATTGGTGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCACCAATTTTTCTAAAGT
* * * * *
1587409 CTAAGTTCGTG-TCTCCAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCGTTTTGTGAT
66 CTAAGTTCGTGCT-TCAAATGAG-CAAACATGGATTCTACTATTGATCTTTTTTCATTTTGTGAT
* * * ** * * *
1587473 TAGGCACTAT-GATAGATTCTTTTCAATAGGATAAATGATTTTGATGATTTTCTTTTGCATGGAA
129 TAGGCACTATAAACACATTCTCCTCAATAGGATAAATGGTATTGATGATTTTCTTTTGCATGAAA
* * * * * * * *
1587537 ATCTTTTCTTTACACTATTTTTCGTAAAGTCAAAGTTCATCTCTTAAATAAGATAAGCATCGATT
194 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCCATT
* * * * * * * * **
1587602 CTAATAACAATCCCCATGCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTC-GTAGGATGCA
259 CTAGTAACAATCTCCATTCCTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGACACA
* * * * * * *
1587666 CGACATTGATGCTTTCGTGTCGCATGAAAACCTTTTCTTTCTACCATTTTTTATAGAATCAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
** * * * * * * *
1587731 TTCCCTCTCAATTAAGACAGAGATGAATAGTCATACGAATCCCCATTCTTTT
389 TTGTCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTT
1587783 TGGGAATAGG
Statistics
Matches: 1173, Mismatches: 185, Indels: 44
0.84 0.13 0.03
Matches are distributed among these distances:
458 3 0.00
459 62 0.05
460 3 0.00
461 56 0.05
462 1 0.00
463 1 0.00
465 10 0.01
466 74 0.06
467 3 0.00
468 250 0.21
469 12 0.01
471 1 0.00
472 3 0.00
473 2 0.00
474 164 0.14
475 144 0.12
476 91 0.08
477 289 0.25
478 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
GGATACATGATATTGGTGCTTTGGTTCCACAAGAAAGGCTTTTTTCCCACCAATTTTTCTAAAGT
CTAAGTTCGTGCTTCAAATGAGCAAACATGGATTCTACTATTGATCTTTTTTCATTTTGTGATTA
GGCACTATAAACACATTCTCCTCAATAGGATAAATGGTATTGATGATTTTCTTTTGCATGAAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCCATTCT
AGTAACAATCTCCATTCCTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGACACATG
ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
GTCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTACGCACCA
TAAACATAGTCTTCTTATTA
Found at i:1587375 original size:159 final size:156
Alignment explanation
Indices: 1586232--1587377 Score: 422
Period size: 159 Copynumber: 7.3 Consensus size: 156
1586222 AACACATTCC
* * * * *
1586232 CTTC-ATTAGGATACATGACAATGATGCTTTGGCGTCGCAAGAGAAGCTTTTCTTTCCACCCTTT
1 CTTCTATTAAGATACATGATATTGATGCTTTGG-TTCGCAAGAAAAGCTTTTCTTTCCA-CCTTT
* * * * * * *
1586296 TTGAAAGAATTAAAGTTTATCTCTAAAATAAGACAAACATGAATACTCATACTATTCCCCATTCT
64 TTCATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATTCTCATACTATTTCTCATTCT
** *
1586361 TTTCAAGATTACACACCATAAACATAGT
129 TTTCAAGATTAGGCACCATAAACATATT
* * * *
1586389 CTTCTTATTAAGATACATGATATTGGTGCTTTGGTTCCACAAGAAAGGCTTTT-TTCCCA-CTAA
1 CTTC-TATTAAGATACATGATATTGATGCTTTGGTT-CGCAAGAAAAGCTTTTCTTTCCACCT--
** * * * * * * *
1586452 TTTTTGTA-AAGTCTAAGTTCGGGC-CTCAAATGAG-CTAACATGGATTC-CAT--TATCTT-T-
62 TTTTCATAGAA-TCAAAGTT-TGTCTCTAAAATAAGACAAACATGAATTCTCATACTAT-TTCTC
* * * *
1586509 TTTCATTTT-GAGATTAGGCACTATAAACACATT
124 ATTC-TTTTCAAGATTAGGCACCATAAACATATT
* * * * * * * * * * *
1586542 CTCCTCATTAGGATAAATGAGATTGATGATTT-TTTTGCATGAAAATCATTTCTTTGC-CCTATT
1 CTTCT-ATTAAGATACATGATATTGATGCTTTGGTTCGCAAGAAAAGCTTTTCTTTCCACCT-TT
* * * * * * ** * * *
1586605 TTCCTTAAAATCAAAGTTCT-TCCCTTAAATAGGACAAGC-TCCATTCT-AGTAATA-ATCTATA
64 TT-CATAGAATCAAAGTT-TGTCTCTAAAATAAGACAAACATGAATTCTCA-TACTATTTCT-CA
** * * *
1586666 TTCTTCCCAAGATTGGGAACC-TAAAACACATT
125 TTCTTTTCAAGATTAGGCACCAT-AAACATATT
* * * ** * * * * *
1586698 CCCTTC-ATTAAGACATAAGGCATTGAAGCTTTGGTGTCACAACAATAGCTTTTCTTTCCGCCGT
1 --CTTCTATTAAGATACATGATATTGATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACC-T
* * * * *
1586762 TTTTGATAGAGTCAAAGTTTGTCTCTAAAATAAGACAAACATGAATGCTCATACTATTCCCCATT
62 TTTTCATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATTCTCATACTATTTCTCATT
*
1586827 CTTTTCAAGATTATGCACCATAAACATAGTT
127 CTTTTCAAGATTAGGCACCATAAACATA-TT
* * * * **
1586858 -TTCTTATTAGGATACA-CAGTATTGTTGCTTTGGTTCCACAAG-AAAGGGTTT-TTTCCTACCA
1 CTTC-TATTAAGATACATGA-TATTGATGCTTTGGTT-CGCAAGAAAAGCTTTTCTTTCC-ACC-
* * * * * * * *
1586919 ATTTTT-TTA-AAGTCTAGGTTCATG-CT-TGAAATGAGCCAAACATGGATTCT-ACTATTGATT
61 -TTTTTCATAGAA-TCAAAGTT--TGTCTCTAAAATAAGACAAACATGAATTCTCA-TACT-ATT
* ** ** * *
1586979 TTTTTTTCATTTT-GTGATTAGGCACTATAAACACATT
120 TCTCATTC-TTTTCAAGATTAGGCACCATAAACATATT
* * ** * * ** * * * *
1587016 CTCCTCAATAAGATTGATGGTATTGATGATTTTCTTTTC-CATGAATATCGTTTC-TTCGC-CCT
1 CTTCT-ATTAAGATACATGATATTGATG-CTTT-GGTTCGCAAGAAAAGCTTTTCTTTC-CACCT
* * ** * ** * * ** * *
1587078 ATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAGGACAAGCATCCATTCT-AGTAACAATCTC-
62 -TTTT-CATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATTCTCA-T-ACTATTTCT
* * *
1587141 CATTCCTTTCAAGATTGGGAACC-TAAAACATATT
123 CATTCTTTTCAAGATTAGGCACCAT-AAACATATT
* *
1587175 CCCTTC-ATTAAGACACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
1 --CTTCTATTAAGATACATGATATTGATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACC-T
*
1587239 TTTTCATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTATTTCTCATT
62 TTTTCATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATTCTCATACTATTTCTCATT
*
1587304 CTTTTCAAGATTAGGCACCATAAACATAGT
127 CTTTTCAAGATTAGGCACCATAAACATATT
* *
1587334 CTTCGTATTAGGATACATGATATTGGTGCTTTGGTTCCGCAAGA
1 CTTC-TATTAAGATACATGATATTGATGCTTTGGTT-CGCAAGA
1587378 GAGGCCTTTT
Statistics
Matches: 692, Mismatches: 218, Indels: 156
0.65 0.20 0.15
Matches are distributed among these distances:
151 16 0.02
152 31 0.04
153 52 0.08
154 8 0.01
155 6 0.01
156 44 0.06
157 34 0.05
158 131 0.19
159 294 0.42
160 66 0.10
161 10 0.01
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (156 bp):
CTTCTATTAAGATACATGATATTGATGCTTTGGTTCGCAAGAAAAGCTTTTCTTTCCACCTTTTT
CATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATTCTCATACTATTTCTCATTCTTT
TCAAGATTAGGCACCATAAACATATT
Found at i:1588988 original size:380 final size:378
Alignment explanation
Indices: 1588273--1589431 Score: 1316
Period size: 380 Copynumber: 3.0 Consensus size: 378
1588263 AGTTTGTCTC
* * * *
1588273 TAAAAATGGATACACGATATTGATGGTTTAGTTTCGCAAGAAATGCTCTCTTCCCACAAATTTTT
1 TAAATATGGATACACGATATTGATGCTTTAGTTTCGTAAGAAATGCTTTCTTCCCACAAATTTTT
** * * * *
1588338 GTAAAGGGTAAATTATTGCCATAAATGAGCCAAATGTGGATCCTAGTACTTATCTCCATTCGTTT
66 GTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCGTTT
* * * * *
1588403 TGTGATTAAGCCA-TATAAACAGAATCTTTTCCTTACGATAAATGATATTGATGATTTTCTTTTA
131 TGTGATT-AGGCAGTATAAACAAAATCTTTTCCTTAAGATAAGTGATATTGATGATTTTCTTTTG
* * * * * *
1588467 CATGAAAATCATTTCTTTGCCTTATTTTCCTGAAAATCAAAGTTCATCCCTTAAATAAGAGAAAC
195 CATGAAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGC
* * * *
1588532 ATCGATTCTCGTAATAGTCTCCATTATTTTCTATATTGGTAACCTAAAACACATTCTCTTCAATA
260 ATCGATTCTCGT-ATA--CTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCATTA
* *
1588597 GGATGCATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
322 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* *
1588654 T-AATATGGATACACGATATTGATGCTTTGGTTTCGTAAGAATTGCTTTCTTCCCACAAATTTTT
1 TAAATATGGATACACGATATTGATGCTTTAGTTTCGTAAGAAATGCTTTCTTCCCACAAATTTTT
* * * * * *
1588718 GTGAAGTCTAAGTTCCTGCCACAAATGAGCCAAATGTGGATTCTGGTAGTTATCTCCATTCATTC
66 GTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCGTTT
* * *
1588783 TGTGATTAGGCAGTATAAAACACAACCTTTATCC-TAAGATAAGTGCT-TTGATGATTTTCTTTT
131 TGTGATTAGGCAGTAT-AAACAAAATCTTT-TCCTTAAGATAAGTGATATTGATGATTTTCTTTT
* *
1588846 GCATGAAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAG
194 GCATGAAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAG
* *
1588911 CATCGATTCTCGTAGTAACCTCCATTATTTTCTAGATTGGGAACCGAAAACACATTCCCTTTATT
259 CATCGATTCTCGTA-T-A-CTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCATT
*
1588976 AGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTATTTTTGATAGA
321 AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-C-C-------------
*
1589041 ATCAAAGTTTTTCTCT
371 A-C--CG---TT-T-T
* ** * *
1589057 TAAATATGGATACACGATATTGATGCTTTTGTTTTATAGGAAAGGCTTTCTTCCCACAAATTTTT
1 TAAATATGGATACACGATATTGATGCTTTAGTTTCGTAAGAAATGCTTTCTTCCCACAAATTTTT
1589122 GTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCGTTT
66 GTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCGTTT
* ** *
1589187 TCTGATTAGGCAGTATAAACAAAATCTTTTCCTTGGGATAAGTGATATTGATGATTTTTTTATTT
131 TGTGATTAGGCAGTATAAACAAAATCTTTTCCTTAAGATAAGTGATATTGATGA---TTTTCTTT
* * * * *
1589252 TGCATGAAAATATTTTCTATGCCTTA-TTGTCTTTAAAATCAAATTTCATCTCTTAAATATGACA
193 TGCATGAAAATCTTTTCTTTGCCTTATTTTTC-TTAAAATCAAAGTTCATCTCTTAAATAAGACA
* *
1589316 AGCATCGA------TAT-CTCCATTATTTTCTAGGTTGGGAACCTAATACACATTCCCTTCATTA
257 AGCATCGATTCTCGTATACTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCATTA
* ** * * *
1589374 GGATCCATGACAACGATGCTATGGTGTCGCAAGAAAAGCTTTTCTTTCCGCCATTTT
322 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
1589431 T
1 T
1589432 GATAGAATCA
Statistics
Matches: 661, Mismatches: 82, Indels: 77
0.81 0.10 0.09
Matches are distributed among these distances:
374 2 0.00
375 1 0.00
376 2 0.00
379 5 0.01
380 291 0.44
381 25 0.04
382 4 0.01
395 2 0.00
396 2 0.00
397 85 0.13
398 1 0.00
400 1 0.00
401 4 0.01
402 4 0.01
403 23 0.03
404 138 0.21
406 4 0.01
407 67 0.10
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (378 bp):
TAAATATGGATACACGATATTGATGCTTTAGTTTCGTAAGAAATGCTTTCTTCCCACAAATTTTT
GTAAAGTCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCGTTT
TGTGATTAGGCAGTATAAACAAAATCTTTTCCTTAAGATAAGTGATATTGATGATTTTCTTTTGC
ATGAAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCA
TCGATTCTCGTATACTCCATTATTTTCTAGATTGGGAACCTAAAACACATTCCCTTCATTAGGAT
ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
Found at i:1590354 original size:476 final size:476
Alignment explanation
Indices: 1589064--1592176 Score: 3407
Period size: 476 Copynumber: 6.6 Consensus size: 476
1589054 TCTTAAATAT
* * * * * * *
1589064 GGATACACGATATTGATGCTTTTGTTTTA-TAGGAAAGGCTTTCTTCCCACAAATTTTTGTAAAG
1 GGATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * ** * * * * *
1589128 TCTAAGTTCTTGCCACAAATGAGCCAAATGTGGATTCTAGTACTTATCTCCATTCGTTTTCTGAT
66 TCTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * ** * * * *
1589193 TAGGCAGTATAAACAAAATCTTTTCCTTGGGATAAGTGATATTGATGATTTTTTTATTTTGCATG
130 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA---TTTTCTTTTGCATG
* * * * * * * * *
1589258 AAAATATTTTCTATGCCTTATTGTCTTTAAAATCAAATTTCATCTCTTAAATATGACAAGCATCG
192 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * * * *
1589323 -----A-T----ATCTCCATTATTTTCTAGGTTGGGAACCTAATACACATTCCCTTCATTAGGAT
257 ATTCTAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGAT
* ** * * *
1589378 CCATGACAACGATGCTATGGTGTCGCAAGAAAAGCTTTTCTTTCCGCCATTTTTGATAGAATCAA
322 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * *
1589443 CGTTTGTCTCTAAAATAAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTACG
387 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGG
*
1589508 CACCATAAACATAGTCTTCTGATT-
452 CACCATAAACATAGTCTTCTCATTA
*** ** * *
1589532 GAGATATATGATATTGGTGCTTTGG-TTCCGCAAGAAAGGTTTTTTTCCCACTAATTTTTGTAAA
1 G-GATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * * * *
1589596 GTCAAAGTTCGAGCCTCAAAT-GAGCTAACATGGATTCCA-T--T-ATCTTCTTTCATTTTGTGG
65 GTCTAAGTTCGTGCCTCAAATAGA-CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * *
1589656 TT-GGCACTATAAACACATTCACCTCATTTGGATAAATGGTATTGATGATTTTCTTTTGTATGAA
129 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * * *
1589720 AATCTTTTTTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAGGACAAGCATCCAT
194 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
** * * *
1589785 TCTAGTAACAATCTATATTCTTCTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGACAC
259 TCTAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGATAC
*
1589850 AAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
324 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * *
1589915 GTTGTCGCTAAAATAAAACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCA
389 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * *
1589980 CCAAAAACATAGTTTTCTTATTA
454 CCATAAACATAGTCTTCTCATTA
* * *
1590003 GGATACGCAATATTGGTGCTTTGGTTTTAG-AAGAAGGGCTTTTTTCCCACCAATTTTTGTAAAG
1 GGATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * * * *
1590067 TCTAAGTTTGTGCCTCAAATACGAGAAACATAGATTCTAGTAATAATCTTCTTTCATCTTGTGAT
66 TCTAAGTTCGTGCCTCAAATA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
1590132 TAGGCACGATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAAGGAT
130 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * *
1590197 ATCTTTTCTTTGCCCAATTTTCCTTAAAATCAATGTTCATCCCTGAAATAAGACAAGCATCAATT
195 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * *
1590262 CTAGTAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTACAATATGATACG
260 CTAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGATACA
* * ** * * * * *
1590327 TGACAGTGAAGCTTTGGCATTGCAAGAAACGCTTTTTTTTTCACCGTTTTTGGTAGAATCAAAGT
325 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * *
1590392 TTGTCCCTTAAATAAGACAAACATGAATACTTATCCTATTCCCCATTCTTTTCAAGATCAGGCAC
390 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCAC
**
1590457 TGTAAACATAGTCTTCTCATTA
455 CATAAACATAGTCTTCTCATTA
* *
1590479 GGATACCCGATATTGGTGCTTTGGTTTTAG-AAGAAAGGCTTGTTTCCCACCAATTTTTGTAAAC
1 GGATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * *
1590543 CCTAAGTTAGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTAT-ATTCATTTTGGGG
66 TCTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTTGTGA
* * *
1590607 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGTTATTGATGATTTTCTTTTGCGT-GA
129 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * * *
1590671 ACATCTTTTCTTTGCCCTATTAT-ATTCAAAATCATAA-TTCATCCCTTAAATAAGATAAACATC
194 A-ATCTTTTCTTTGCCCTATTTTCCTT-AAAATCA-AAGTTCATCCCTTAAATAAGACAAGCATC
* * * * ** **
1590734 GATTCTAATAACAGTCTCCATTATTTTCAGGATTAAGAACCTAAAACACATTCATTTCAATAGGA
256 GATTCTAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGA
* * * * * *
1590799 TACATGACATCG-TGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACAGTTTTTGTTAAAATCA
321 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * * *
1590863 AAGTTTGTCTTTTAAATAAGACAAACATGATTACCCATATTATTCCCCATACTTTTCAAGATTAG
386 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAG
*
1590928 GCACCATAAACATAGTCTTGTCATTA
451 GCACCATAAACATAGTCTTCTCATTA
* * * *
1590954 GGATACCCGATATTGGTGCCTTGGTTTT-GCAAGAAAGG-TATTTTTTCCACAAATTTTTGAAAA
1 GGATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCT-TTTTTCCCACCAATTTTTGTAAA
* * * * *
1591017 GCCTAAGTTCATGCCTCAAATAAGACAAACAAGGATTCTAGTAATGGTCTTCATTCATTTTGGGA
65 GTCTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * *
1591082 TTGGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGA-TTTCTTTTACATGGA
129 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * * * * * * *
1591146 CATCTTTT-TTT-CTCTATTATCCTAAAAATCATAGTTTAGCCCTTAAATAAGATAAGCATCGAT
194 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * * ** *
1591209 TCAAGTAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACACATTCCTTTC-ATAAGGATA
259 TCTAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAAT-AGGATA
* * * **
1591273 TATGACATTGATGCTTTGGTGTCACAAGAAAAGC---T-TGT-CAAAGTTTTTGATAGAATCAAA
323 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA
* * * * * * * *
1591333 GTTTGTCTTTTAAATAAGACAAACATGAGTAGTCATACTAATCCCTATTCTTTTGAGGATTAAGC
388 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGC
*
1591398 ACCATAAACATAGTCTTCTCATAA
453 ACCATAAACATAGTCTTCTCATTA
* * * ** * * *
1591422 AGATTCACGATATTGAAGCTTTGG-TTTCGCAAGGAAGGCTTTCTTCCCACCAATTATTT-TAAA
1 GGATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCTTTTTTCCCACCAATT-TTTGTAAA
* * * * *
1591485 GTCTAAGTTCATGCCTTAAATGAGCCAAACATGGATTCTAGTATTGATCTCCATTCATTTTGTGA
65 GTCTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * *
1591550 TTAGGCACTATAAACACATTATCCTCATTAAGATTAATGATTTTGATGATTTTCTTTTGCATCGA
129 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * * * *
1591615 AGTCTTTCCTTTGTCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAAT
194 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * ** * * *
1591680 TCTCGTAACAATTTCCATTCTTTTCAAGATTGGGATCGAAAAACACATTCCCTTTATTAGGATGC
259 TCTAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGATAC
* * * * * * * *
1591745 AAGACATTTATGCTTCGGGGTTGCAAGAAAAACTTTTCTTTCTATCGTTTTTGATAGAATCAAAG
324 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * * *
1591810 TTTGT-TGCTTAAATAAGGCAAACATGATTACTCATACTATTCCCCATACTTTTTAAGACTA-GC
389 TTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGC
*
1591873 ACCATAACCATAGTCTTCTCATTA
453 ACCATAAACATAGTCTTCTCATTA
* * * * *
1591897 AGATACCCGATATTGATGCTTTGG--TGACGGAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAA
1 GGATACCCGATATTGGTGCTTTGGTTTTA-GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* *
1591960 GTCTAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGA
65 GTCTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * *
1592025 TTAAGCACTATAAACATATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTTTTGCATGGA
129 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *
1592090 AATGTTTTATTTGCCCTACTTTT-CTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGA
194 AATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * *
1592154 TTCTCGCAACAATCTCCACTCTT
258 TTCTAGTAACAATCTCCATTCTT
1592177 CTTAGGATTA
Statistics
Matches: 2229, Mismatches: 365, Indels: 95
0.83 0.14 0.04
Matches are distributed among these distances:
460 66 0.03
463 36 0.02
464 16 0.01
465 2 0.00
466 1 0.00
467 5 0.00
468 251 0.11
469 89 0.04
470 254 0.11
471 133 0.06
472 107 0.05
473 26 0.01
474 26 0.01
475 564 0.25
476 650 0.29
477 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
GGATACCCGATATTGGTGCTTTGGTTTTAGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
TCTAAGTTCGTGCCTCAAATAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
TAGTAACAATCTCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCAATAGGATACAT
GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
TGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACC
ATAAACATAGTCTTCTCATTA
Found at i:1592547 original size:316 final size:317
Alignment explanation
Indices: 1591908--1592565 Score: 760
Period size: 316 Copynumber: 2.1 Consensus size: 317
1591898 GATACCCGAT
* * * * * * * *
1591908 ATTGATGCTTTGGTGACGGAAGAAAGGCTTT-TTTTCCACCAATTTTTGTAAAGTCTAAGTTCGT
1 ATTGATGCTTTAGTGTCGCAAGAAA-GATTTGATTCCCACCAATTTTTATAAAGTCTAAGATCGT
* * * * *
1591972 GCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAAGCACTATA
65 GCCTCAAATAAGACAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTAATTAAGCACTATA
* * *
1592037 AACATATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATGTTTTATTT
130 AACACATTCTCCTTATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTATTT
*
1592102 GCCCTACTTTTCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTCGCAACAAT
195 GCCCTACTTTTCTTAAAATCAAAGTGCATCCATTAAATAAGACAAGCATCGATTCTCGCAACAAT
** * * *
1592167 CTCCACTCTTCTTAGGATTAGGCACCGTAAACATAGTCTTCTTATAAGGGTACACAAT
260 CTCCACTCTTCTTAGGATTAGGCACCAAAAACATAGTCTCCTTATAAGGATACACAAC
* * * *
1592225 ATTGATGGTTTGGTTTTGCAAGAAAGATTTGATTCCCACCAATTTTTATAAAGTCT-AGATCGTG
1 ATTGATGCTTTAGTGTCGCAAGAAAGATTTGATTCCCACCAATTTTTATAAAGTCTAAGATCGTG
* * *
1592289 CCTCAAATAAG-CGAAACGTGAATTCTAGTATTGATCTTCATTCATTTTGTAATTAGGCACTATA
66 CCTCAAATAAGAC-AAACATGAATTCTAGTAATGATCTTCATTCATTTTGTAATTAAGCACTATA
* * * *
1592353 AACACATTCTCCTCT-TTAAGATTAA-GTATATTCATGATTTTCTTTTGCATGGAATTCTTTTCT
130 AACACATTCTCCT-TATTAAGATAAATG-ATATTAATGATTTTCTTTTGCATGGAAATCTTTTAT
* * * * *
1592416 TTGCCCTA-TTTTCTTTAAAATCAAAGTGCATCCCTTGAATAAGATAAGCATTGATTCTCGTAAC
193 TTGCCCTACTTTTC-TTAAAATCAAAGTGCATCCATTAAATAAGACAAGCATCGATTCTCGCAAC
* * * * * **
1592480 ACTCTCCA-TTTTTTTCAAGG-TTAGG-ATCCAAAAACATATTC-CCTTCATTAGGATACATGAC
257 AATCTCCACTCTTCTT--AGGATTAGGCA-CCAAAAACATAGTCTCCTT-ATAAGGATACACAAC
1592541 ATTGATGCTTTAGTGTCGCAAGAAA
1 ATTGATGCTTTAGTGTCGCAAGAAA
1592566 AGCTTTTCTT
Statistics
Matches: 285, Mismatches: 47, Indels: 19
0.81 0.13 0.05
Matches are distributed among these distances:
315 16 0.06
316 223 0.78
317 46 0.16
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (317 bp):
ATTGATGCTTTAGTGTCGCAAGAAAGATTTGATTCCCACCAATTTTTATAAAGTCTAAGATCGTG
CCTCAAATAAGACAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTAATTAAGCACTATAA
ACACATTCTCCTTATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTATTTG
CCCTACTTTTCTTAAAATCAAAGTGCATCCATTAAATAAGACAAGCATCGATTCTCGCAACAATC
TCCACTCTTCTTAGGATTAGGCACCAAAAACATAGTCTCCTTATAAGGATACACAAC
Found at i:1593039 original size:791 final size:790
Alignment explanation
Indices: 1591388--1593040 Score: 1983
Period size: 791 Copynumber: 2.1 Consensus size: 790
1591378 TATTCTTTTG
* * * * * * * * * *
1591388 AGGATTAAGCACCATAAACATAGTCTTCTCATAAAGATTCACGATATTGAAGCTTTGGTTTCGCA
1 AGGATTAGGAACCGTAAACACAGTCTTCTTATAAGGATACACAACATTGAGGCTTTGGTTTCGCA
* * * * * *
1591453 AGGAAGGCTTTCTTCCCACCAATTATTTTAAAGTCTAAGTTCATGCCTTAAATGAGCCAAACATG
66 A-GAAAGATTTATTCCCACCAATTATTTTAAAGTCTAAGATCATGCCTCAAATAAGCCAAACATG
* *
1591518 GATTCTAGTATTGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAAGA
130 AATTCTAGTATTGATCTCCATTCATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAAGA
* * *
1591583 TTAATGATTTTGATGATTTTCTTTTGCATCGAAGTCTTTCCTTTGTCCTATTTTCTTTAAAATCA
195 TTAATGATATTCATGATTTTCTTTTGCATCGAAGTCTTTCCTTTGCCCTATTTTCTTTAAAATCA
* * *
1591648 AAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATTTCCATTCTTTTCAAGATTGG
260 AAGTGCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAG
* * * * * *
1591713 GATCGAAAAACACATTCCCTTTATTAGGATGCAAGACATTTATGCTTCGGGGTTGCAAGAAAAAC
325 GATCCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTCAGGGTCGCAAGAAAAAC
* * * *
1591778 TTTTCTTTCTATCGTTTTTGATAGAATCAAAGTTTGTTGCTTAAATAAGGCAAACATGATTACTC
390 TTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTT-CTTAAATAAGACAAACATGAATACTC
* * * *
1591843 ATACTATTCCCCATACTTTTTAAGACTAGCACCATAACCATAGTCTTCTCATTAAGATACCCGAT
454 ATACTAATCCCCATACTTTTTAAGACTAGCACCAAAAACATAGCCTTCTCATTAAGATACCCGAT
* * * * * *
1591908 ATTGATGCTTTGGTGACGGAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTG
519 ATTGATGCTTTGGTGACGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAATTCGTA
* * *
1591973 CCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAAGCACTATAA
584 CCTTAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAAGCACTATAA
* * * *
1592038 ACATATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATGTTTTATTTG
649 ACAGATTCTCCTCATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTATTTG
* *
1592103 CCCTACTTTTCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTCGCAACAATC
714 CCCTAATTTTCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTAGCAACAATC
*
1592168 TCCACTCTTCTT
779 TCCACTATTCTT
* * * * *
1592180 AGGATTAGGCACCGTAAACATAGTCTTCTTATAAGGGTACACAATATTGATGG-TTTGGTTTTGC
1 AGGATTAGGAACCGTAAACACAGTCTTCTTATAAGGATACACAACATTGA-GGCTTTGGTTTCGC
* * *
1592244 AAGAAAGATTTGATTCCCACCAATT-TTTATAAAGTCT-AGATCGTGCCTCAAATAAGCGAAACG
65 AAGAAAGATTT-ATTCCCACCAATTATTT-TAAAGTCTAAGATCATGCCTCAAATAAGCCAAACA
* * *
1592307 TGAATTCTAGTATTGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCTTTAA
128 TGAATTCTAGTATTGATCTCCATTCATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAA
* * *
1592372 GATTAA-GTATATTCATGATTTTCTTTTGCATGGAATTCTTTTCTTTGCCCTATTTTCTTTAAAA
193 GATTAATG-ATATTCATGATTTTCTTTTGCATCGAAGTCTTTCCTTTGCCCTATTTTCTTTAAAA
* * ** * * *
1592436 TCAAAGTGCATCCCTTGAATAAGATAAGCATTGATTCTCGTAACACTCTCCATTTTTTTCAAGGT
257 TCAAAGTGCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGAT
* * * *
1592501 TAGGATCCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAA
322 TAGGATCCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTCAGGGTCGCAAGAAA
* *
1592566 AGCTTTTCTTTCCT-CCATTTTTGGTAGAATCAAAGTTTGTAT-TATAAATAAGACAAACATGAA
387 AACTTTTCTTT-CTACCATTTTTGATAGAATCAAAGTTTGT-TCT-TAAATAAGACAAACATGAA
* * * *
1592629 TACTCATACTAATCCCCATTCTTTTTCAGGATTATGCACCAAAAACGTAGCCTTCTCA-TAAGGA
449 TACTCATACTAATCCCCATACTTTTT-AAGACTA-GCACCAAAAACATAGCCTTCTCATTAA-GA
* * **
1592693 TACGCGATGTTGATGCTTCT-GTTTCGCAAGAAAGG-TTTCTTCCCACCAATTTTTGTAAAGCCT
511 TACCCGATATTGATGCTT-TGGTGACGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCT
* * *** *
1592756 AAATTCGTACCTTAAAAGTGCCAATTGTGGATTCTAGTATTGATCTCCATTCATTTTGTGATT-A
575 AAATTCGTACCTTAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAA
* * * * *
1592820 GTCACTATAAACAGGTTCTTCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGACAT
640 G-CACTATAAACAGATTCTCCTCATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAAT
* * *
1592885 CTTTTCA-TTGCCTTAATTTTGTTAAAATCACAA-TTCATCTC-TTAAATAAGATAAGCATCGAT
704 CTTTT-ATTTGCCCTAATTTTCTTAAAATCA-AAGTTCATC-CATTAAATAAGACAAGCATCGAT
* *
1592947 TCTAG-TACTAGTCTCC-CTATT-TT
766 TCTAGCAAC-AATCTCCACTATTCTT
* * * *** *
1592970 CAGGATTGGGAACC-TAAAACACATTCTT-TTAATTAGGATACTTGACATTGAGGCTTTGGTGTC
1 -AGGATTAGGAACCGT-AAACACAGTCTTCTT-ATAAGGATACACAACATTGAGGCTTTGGTTTC
1593033 GCAAGAAA
63 GCAAGAAA
1593041 AGCTTTTATT
Statistics
Matches: 730, Mismatches: 111, Indels: 41
0.83 0.13 0.05
Matches are distributed among these distances:
790 9 0.01
791 388 0.53
792 278 0.38
793 54 0.07
794 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (790 bp):
AGGATTAGGAACCGTAAACACAGTCTTCTTATAAGGATACACAACATTGAGGCTTTGGTTTCGCA
AGAAAGATTTATTCCCACCAATTATTTTAAAGTCTAAGATCATGCCTCAAATAAGCCAAACATGA
ATTCTAGTATTGATCTCCATTCATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAAGAT
TAATGATATTCATGATTTTCTTTTGCATCGAAGTCTTTCCTTTGCCCTATTTTCTTTAAAATCAA
AGTGCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG
ATCCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTCAGGGTCGCAAGAAAAACT
TTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTTCTTAAATAAGACAAACATGAATACTCAT
ACTAATCCCCATACTTTTTAAGACTAGCACCAAAAACATAGCCTTCTCATTAAGATACCCGATAT
TGATGCTTTGGTGACGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAATTCGTACC
TTAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAAGCACTATAAAC
AGATTCTCCTCATTAAGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTATTTGCC
CTAATTTTCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTAGCAACAATCTC
CACTATTCTT
Found at i:1593417 original size:474 final size:474
Alignment explanation
Indices: 1592182--1593493 Score: 1450
Period size: 474 Copynumber: 2.8 Consensus size: 474
1592172 CTCTTCTTAG
** * * * * * * **
1592182 GATTAGGCACCGTAAACATAGTCTTCTTATAAGGGTACACAATATTGATGGTT-TGGTTTTGCAA
1 GATTAGGCACCAAAAACATAGCCTTCTCATAAGGATACCCGATATTGATGCTTCT-GTTTCACAA
* * * * *
1592246 GAAAGATTTGATTCCCACCAATTTTTATAAAGTCT-AGATCGTGCCTCAAAT-AAGCGAAACGTG
65 GAAAGGTTT-CTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCTTCAAATGAAAC-AAACGTG
* * *
1592309 AATTCTAGTATTGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTC-TTTAAG
128 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCATTT-AG
* * *
1592373 ATTAA-GTATATTCATGATTTTCTTTTGCATGGAATTCTTTTCTTTGCCCTATTTTCTTTAAAAT
192 ATTAATG-ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTT-AAAT
* * * * * *
1592437 CAAAGTGCATCCCTTGAATAAGATAAGCATTGATTCTCGTAACACTCTCCATTTTTTTCAAGG-T
255 CAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGT-ACAATCTCCACTATTTTC-AGGAT
* * *
1592501 TAGGATCCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAA
318 TGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTAGTGTCGCAAGAAA
* * *
1592566 AGCTTTTCTTTCCTCCATTTTTGGTAGAATCAAAGTTTGTATTATAAATAAGACAAACATGAATA
383 AGCTTTTATTTCCTCCATTTTTGATAGAATCAAAGTTTATATTATAAATAAGACAAACATGAATA
* *
1592631 CTCATACTAATCCCCATTCTTTTTCAG
448 CTCATACTAATCCCCATTCTTATTCAA
* * * * *
1592658 GATTATGCACCAAAAACGTAGCCTTCTCATAAGGATACGCGATGTTGATGCTTCTGTTTCGCAAG
1 GATTAGGCACCAAAAACATAGCCTTCTCATAAGGATACCCGATATTGATGCTTCTGTTTCACAAG
* * * * * * **
1592723 AAAGGTTTCTTCCCACCAATTTTTGTAAAGCCTAAATTCGTACCTTAAAAGTG--CCAATTGTGG
66 AAAGGTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGT-GCTTCAAA-TGAAACAAACGTGG
* * * * *
1592786 ATTCTAGTATTGATCTCCATTCATTTTGTGATTAGTCACTATAAACAGGTTCTTCTCATTAAGAT
129 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCATTTAGAT
* * * *
1592851 TAATGATATTGATGATTTTCTTTTGCATGGACATCTTTTCATTGCCTTAATTTTGTTAAAATCAC
194 TAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTT-ATTTTCTTTAAATCA-
* * *
1592916 AA-TTCATCTCTTAAATAAGATAAGCATCGATTCTAGTACTAGTCTCC-CTATTTTCAGGATTGG
257 AAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGTAC-AATCTCCACTATTTTCAGGATTGG
* * ** * * *
1592979 GAACCTAAAACACATTCTTTTAATTAGGATACTTGACATTGAGGCTTTGGTGTCGCAAGAAAAGC
321 GATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTAGTGTCGCAAGAAAAGC
* * *
1593044 TTTTATTTCCAT-TATTTTTGATAGAATCAAAGTTTATCTCT-TAAATAAGACAAATATGAATAC
386 TTTTATTTCC-TCCATTTTTGATAGAATCAAAGTTTATAT-TATAAATAAGACAAACATGAATAC
* *
1593107 TCTTAC-AATTCCCCTTTC-TATTCAA
449 TCATACTAA-TCCCCATTCTTATTCAA
* * * ** * *
1593132 GATTAGGCACCACAAACATGGTCTTCTTGTTAGGATACCCGATATTGGTGCTT-TGGTTTCACAA
1 GATTAGGCACCAAAAACATAGCCTTCTCATAAGGATACCCGATATTGATGCTTCT-GTTTCACAA
* * * * *
1593196 GAATGGCTTT-TTTCCACCAATTTTTCTAAAGTCTAAGTTTGTGCTTCAAATGAAACAAACATGG
65 GAAAGG-TTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCTTCAAATGAAACAAACGTGG
* * * * *
1593260 ATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCAGTATAAATAGATTCTCCTCATTTGGAT
129 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCATTTAGAT
* * *
1593325 AAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCTTATTTTCCTTTCAATCAA
194 TAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTTAAATCAA
* * * * *
1593390 AGTTCATCCCCTAAATATGACAAGCATCGATTCTCGTAGCAATCTCCACTCTTTTCAAGATTGGG
258 AGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGTA-CAATCTCCACTATTTTCAGGATTGGG
*
1593455 ATCCAAAAATACATTCCCTTCATTAGGATACATGACATT
322 ATCCAAAAACACATTCCCTTCATTAGGATACATGACATT
1593494 TCTAAGCTCA
Statistics
Matches: 691, Mismatches: 123, Indels: 45
0.80 0.14 0.05
Matches are distributed among these distances:
472 2 0.00
473 14 0.02
474 241 0.35
475 206 0.30
476 208 0.30
477 19 0.03
478 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (474 bp):
GATTAGGCACCAAAAACATAGCCTTCTCATAAGGATACCCGATATTGATGCTTCTGTTTCACAAG
AAAGGTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCTTCAAATGAAACAAACGTGGAT
TCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCATTTAGATTA
ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAATCAAAGT
TCATCCCTTAAATAAGATAAGCATCGATTCTCGTACAATCTCCACTATTTTCAGGATTGGGATCC
AAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTAGTGTCGCAAGAAAAGCTTTTA
TTTCCTCCATTTTTGATAGAATCAAAGTTTATATTATAAATAAGACAAACATGAATACTCATACT
AATCCCCATTCTTATTCAA
Found at i:1594341 original size:152 final size:151
Alignment explanation
Indices: 1594056--1594364 Score: 591
Period size: 152 Copynumber: 2.0 Consensus size: 151
1594046 TCAATTGTTG
*
1594056 GAAACTCATATTTATAGGCTAGAATGTTGACATACTCATCGAAGATTGAATGATTGTGTTTGTAT
1 GAAATTCATATTTATAGGCTAGAATGTTGACATACTCATCGAAGATTGAATGATTGTGTTTGTAT
1594121 CCATTGTTGACTTCTTTGGAGCTTGTTTTCGCGCATTCACGTTCCTATGTATCGATACTTTTCAT
66 CCATTGTTGACTTCTTTGGAGCTTGTTTTCGCGCATTCACGTTCCTATGTATCGATACTTTTCAT
1594186 AATGTATCGACACATGCATTT
131 AATGTATCGACACATGCATTT
*
1594207 GAAATTCATAATTTATAGGCTAGAATGTTGACATACTCATTGAAGATTGAATGATTGTGTTTGTA
1 GAAATTCAT-ATTTATAGGCTAGAATGTTGACATACTCATCGAAGATTGAATGATTGTGTTTGTA
1594272 TCCATTGTTGACTTCTTTGGAGCTTGTTTTCGCGCATTCACGTTCCTATGTATCGATACTTTTCA
65 TCCATTGTTGACTTCTTTGGAGCTTGTTTTCGCGCATTCACGTTCCTATGTATCGATACTTTTCA
1594337 TAATGTATCGACACATGCATTT
130 TAATGTATCGACACATGCATTT
1594359 GAAATT
1 GAAATT
1594365 TATAGTCATT
Statistics
Matches: 155, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
151 8 0.05
152 147 0.95
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (151 bp):
GAAATTCATATTTATAGGCTAGAATGTTGACATACTCATCGAAGATTGAATGATTGTGTTTGTAT
CCATTGTTGACTTCTTTGGAGCTTGTTTTCGCGCATTCACGTTCCTATGTATCGATACTTTTCAT
AATGTATCGACACATGCATTT
Found at i:1600835 original size:474 final size:473
Alignment explanation
Indices: 1599717--1603501 Score: 4456
Period size: 474 Copynumber: 8.0 Consensus size: 473
1599707 CTGTATTAAT
* *
1599717 GTCTTCTC-TTAAGGATACACAAT-TTCGGTGCTTTGGTTTCACAACAAAGGCTTTTTTTCCCAC
1 GTCTTCTCATT-AGGATACACGATATT-GGTGCTTTGGTTTCACAAGAAAGGC-TTTTTTCCCAC
* * * * *
1599780 CAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGCGAAACGTGGGTTCTCGTATTGATCTTC
63 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTC
* * * * *
1599845 ATTCATTTTGTAATTAGGCATTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTT
128 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * * ** * *
1599910 TCTTTTGCATGGAAATATTTTCTTTGCCTTATTTTACTTAATGTTAAAGTTCATCCCATAAATAA
193 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
1599975 GATAAGCATCGATTCTCGTAACAATCTCCATTCTTCTT-AAGATTGGGATCCAAAAACATATTTT
257 GACAAGCATCGATTCTCATAACAATCTCCATTCTT-TTCAAGATTGGGATCCAAAAACACATTCT
* *
1600039 CCTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTTTTTCCACCTTTTT
321 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACC-TTTT
* ** ** * * *
1600104 TGATAGAATCATAGGTTTGTCTCTTAAATAAGACAAACGTGAATAGGCATGCTAAT-CCTATTTT
384 TGATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCT
*
1600168 TTTCGGGATTAGGCACCATAAATGTA
448 TTTCAGGATTAGGCACCATAAATGTA
* * * *
1600194 GTCTTCTC-TTAAAGATAGACGATTTTGGTGCTTTGGTTTCACAAAAAAGGCTTTTTTCCCACCA
1 GTCTTCTCATT-AGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCA
* * * * * *
1600258 ATTTTTGTGAAGTCTAAGTTCATACCTCAAATGAGCAAAATGTGGGTTCTAGTATTGATCTTCAT
65 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT
* * * *
1600323 TCAATTTGTGATTAGGCACTATAAATACATTCTCCTTATTAAGATTTATGATATTGATGATTTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * *
1600388 TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTACCTAATATCATAA-TTCATCTCTTCAATACG
195 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTAAAATCA-AAGTTCATCCCTTAAATAAG
* * * * *
1600452 ACAAGCTTCAATTCTCATAACAATCTCCTTTCTTTTCAAGATTGGGATCCGAAAACATATTCTCT
258 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCT
* *
1600517 TCATTTA-GATACATGACATTGATGCTTTAGTATCGCAAGAAAAGCTTTTTTTCCACCACTTTTT
323 TCA-TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCA-C-CTTTTT
* * * *
1600581 -ATAAAAGT-AAAGTTTGTCTCTTAAATGAGACAAATATGAATAGTCATGCTAATCCCCATTCTT
385 GATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTT
* *
1600644 TTTAGGATTAGGCACCATAGATGTA
449 TTCAGGATTAGGCACCATAAATGTA
* * * * *
1600669 GTCCTCTCATTTGGATACATGATTTTGGTGCTTTGGTTTCACAAGAAAGG-TTTTTTTCCACCAA
1 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* * *
1600733 TTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCAAAACGTGGGTTCTAGTATTGATCTTCATT
66 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATT
** * * * *
1600798 CATTTTGTGATTAAACACTATAAAGACATTTTCCTTATAAAGATTAATGATATTGATGATTTTCT
131 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
* * * * * * *
1600863 TTTACATGGAAATCTTTTCTTTACCCTATTTCCCTTAAAAT-TAATTTCATCCCTCAAATAAGAT
196 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * *
1600927 AAACATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTAGGATCCAAAAACACATTCTCTTC
260 AAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTC
* * * *
1600992 ATTAGGATACTTGACATTGATACTTTGGTGCCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
325 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACC-TTTTTGAT
* * * * * * *
1601057 AGAATCAAAATTTGTCTCTTAATTATGACAAAGAAGAATACTCATACTATTCCCTATTCTTTTCA
388 AGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTTTTCA
* ** ***
1601122 AGATTAGGCACTTTAAGCATA
453 GGATTAGGCACCATAAATGTA
* * ** * * *
1601143 GTCTTCTAATTAGGATACAAGATATTAATGCTTTGATTTCGA-AAGAAAGACTTTCTTCCCACCA
1 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTC-ACAAGAAAGGCTTTTTTCCCACCA
*
1601207 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCAT
65 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT
* * *
1601272 TCATTTTGGGATTAGGTACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * *
1601337 TTTCGCATGGAAATC-TTTCGTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCTCTTAAGTAAG
195 TTTTGCATGGAAATCTTTTC-TTTGCCCTA-TTTTCCTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * *
1601401 ACAAGCATTGATTCTCGTAATAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACATATTCTTT
258 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCT
* * * * **
1601466 TCATTAGAATACAAGGCATTAATGCTTTGGTGTCAG-AAGAGGAGCTTTTTTTCCACCTTTTTTG
323 TCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTTTTCCACC-TTTTTG
* * * * * *
1601530 ATAGAATTATAAGTTTATCTCTTAAATAAGATAAACATAAATAGTCATACTAATCCCCATTCTTT
386 ATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTTT
* *
1601595 TCGGGATTAGGCACCATAAATGTG
450 TCAGGATTAGGCACCATAAATGTA
* * * * * *
1601619 GTCTTCTC-TTAAAGATACCCGATATTGATGCTTTGGTTTCATAATAAAGGCTTTCTTCCCACCA
1 GTCTTCTCATT-AGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCA
* * *
1601683 ATTTTGGTAAAGTCTAAGTTCGTG-CTCAAATAAGCCAAACGTGGATTCTAGTATTGAT-TTTAT
65 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT
* * * * *
1601746 TCATTTTGTGATTAGACACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGAATTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* *
1601811 TTTTGCATGGAAAAT-TTTTCTTTGCCCTATGTTTCTTAAAATCAAAGTTCATCCCTTAAATAAA
195 TTTTGCATGG-AAATCTTTTCTTTGCCCTAT-TTTCCTAAAATCAAAGTTCATCCCTTAAATAAG
* * ** * *
1601875 ATAAGCATCAATTCTCGCAACAATCTCCATTCTTTTTAAGATTGGCATCCAAAAACACATT-TCT
258 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTC-
* * * *** *
1601939 TTCATTAGGATACATGACTTTGATGCTTTGGTATCACAAG-AACTTTTTTTTTCCCCCGTTTTTG
322 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACC-TTTTTG
* * *
1602003 ATAGAATCAAAGTTTGTCTCTCAAATAAGACAAATATGAATACTCGTACTATTCCCCATTCTTTT
386 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTTTT
* ** ***
1602068 CAAGATTAGGCACTTTAAACAAA
451 CAGGATTAGGCACCATAAATGTA
* ** * * *
1602091 GTCTCCTCATTAGGATACACGATATTACTGCTTTGGATTCGCAAGAAAGGCTTTTTTCCCATCAA
1 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* * *
1602156 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAATGTAGATTCTAGAATTGATCTTCATT
66 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATT
* * * *
1602221 CATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTT-T
131 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
* * * *
1602285 ATTTGCATGAAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTCAATAAGA
196 -TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGA
* * *
1602350 CAAGCATCGATTCTCACAACAATCTCCATTCTTTTTAAGATTGGGATCCAAAAACACATTCCCTT
259 CAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTT
* * * * * * ** *
1602415 CATTAGGGTGCATGATATTGGTGCATTGGTATCGCAAGAAAATATTTTTTTTCACCGTTTTTGAT
324 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACC-TTTTTGAT
* * *
1602480 AGAATCAAAGTTTGTCTCTTAAATATGAC-AATCATGAATAGTCGTACTAAT-CCCATTCTTTTC
388 AGAATCAAAGTTTGTCTCTTAAATAAGACAAAT-ATGAATACTCATACTAATCCCCATTCTTTTC
* * *
1602543 GGGAATAGGCATCATAAATGTA
452 AGGATTAGGCACCATAAATGTA
* * * * * *
1602565 GTCTTTTCGTTACGATACACCATTTTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA
1 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* * * * *
1602630 TTTTTGTAAAGTCTACA-TTCGTGCCTCAAATCAGCCAAGCATGGATTCTAGTTTTGTTCTTCAT
66 TTTTTGTAAAGTCTA-AGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT
* *
1602694 TTATTTTGTGATTAGGCAGTATAAA-ACATTCTCCTCATTAAGATTAATGATATTGATGATTTTT
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA--TTT
* * * * * * ** *
1602758 TTTTTTGCGTGGAAATCTTTTCTTTACCTTATTTTACTTAATATCGTAGTTCATCCCTTAAATAT
193 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTAAAATCAAAGTTCATCCCTTAAATAA
*
1602823 GACAAGCATCGATTCTCATAACAATCTCCTTTCTTTTCAAGATTGGGATCCAAAAACACATTCTC
257 GACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTC
* * * *
1602888 TTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAATGGTTTTCTTTCCAACATTTTT
322 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCC-ACCTTTTT
* * * *
1602953 GATAGAAACAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATATTATTCCCCATTCTTT
385 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTTT
* ** ***
1603018 TCAAGATTAGGCACTTTAAACACA
450 TCAGGATTAGGCACCATAAATGTA
* * * ** *
1603042 ATATTCTCATTAGGATACACGATAGTGGTGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCTACCAA
1 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* * *
1603107 TTTTGGTAAAGTCTAAGTTCATGCCTCAAATGAGCGAAACGTGGATTCTAGTATTGATCTTCATT
66 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATT
* *
1603172 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTAT
131 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
* * * * *
1603237 TTAGCAT-GAAATCTCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACTCTTAAATAAC
196 TTTGCATGGAAA--TCTTTTCTTTGCCCTATTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAG
* *
1603301 ACAGGCATCGATTCTCATATCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCT
258 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCT
* * * *
1603366 TCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAAAAAAAAGCTTTTGTTTCGATCATTTT
323 TCATTAGGATACATGACATTGATGCTTTGGTGTCGC--AAGAAAAGCTTTT-TTTCCA-CCTTTT
* * * *
1603431 TGATAGAATCAAAATTTGTCTCTTAAATAAGATAAACT-TGAATACTCATACTATTCTCCATTCT
384 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-TATGAATACTCATACTAATCCCCATTCT
1603495 TTTCAGG
448 TTTCAGG
1603502 GTTAAGTGTC
Statistics
Matches: 2827, Mismatches: 424, Indels: 112
0.84 0.13 0.03
Matches are distributed among these distances:
472 142 0.05
473 215 0.08
474 873 0.31
475 534 0.19
476 598 0.21
477 345 0.12
478 37 0.01
479 83 0.03
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (473 bp):
GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTAAAATCAAAGTTCATCCCTTAAATAAGACA
AGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCA
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCTTTTTGATAGA
ATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGA
TTAGGCACCATAAATGTA
Found at i:1601750 original size:949 final size:951
Alignment explanation
Indices: 1599717--1603498 Score: 4777
Period size: 949 Copynumber: 4.0 Consensus size: 951
1599707 CTGTATTAAT
* * *
1599717 GTCTTCTC-TTAAGGATACACAATTTCGGTGCTTTGGTTTCACAACAAAGGCTTTTTTTCCCACC
1 GTCTTCTCATT-AGGATACACGATTTTGGTGCTTTGGTTTCACAAGAAAGGC-TTTTTTCCCACC
* * * * *
1599781 AATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGCGAAACGTGGGTTCTCGTATTGATCTTCA
64 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCA
* * * * *
1599846 TTCATTTTGTAATTAGGCATTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTT
129 TTCATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTT
* * * ** *
1599911 CTTTTGCATGGAAATATTTTCTTTGCCTTATTTTACTTAATGT-TAAAGTTCATCCCATAAATAA
194 CTTTTGCATGGAAATCTTTTCTTTACCCTATTTTACTTAAAATCT-AAGTTCATCCCTTAAATAA
* * *
1599975 GATAAGCATCGATTCTCGTAACAATCTCCATTCTTCTTAAGATTGGGATCCAAAAACATATTTTC
258 GATAAGCATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGATCCAAAAACACATTCTC
* * * * *
1600040 CTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTTTTTCCACCTTTTTT
323 TTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTT
* ** * * * *
1600105 GATAGAATCATAGGTTTGTCTCTTAAATAAGACAAACG-TGAATAGGCATGCTAAT-CCTATTTT
388 GATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAA-GATGAATACTCATACTATTCCCCATTCT
** ** ** * * * * *
1600168 TTTCGGGATTAGGCACCATAAATGTAGTCTTCTC-TTAAAGATAGACGATTTTGGTGCTTTGGTT
451 TTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATT-AGGATACACGATATTAGTGCTTTGATT
* * * *
1600232 TC-ACAAAAAAGGCTTTTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATACCTCAAATGAGCAA
515 TCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCA
* * * * *
1600296 AATGTGGGTTCTAGTATTGATCTTCATTCAATTTGTGATTAGGCACTATAAATACATTCTCCTTA
579 AACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCA
* *
1600361 TTAAGATTTATGATATTGATGATTTTCTTTTGCATTGAAA-TCTTTTCTTTGCCCTATTTTACC-
644 TTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATTC-TTTCTTTGCCCTATTTT-CCT
* * * * *
1600424 TAATATCATAA-TTCATCTCTTCAATACGACAAGCTTCAATTCTCATAACAATCTCCTTTCTTTT
707 TAAAATCA-AAGTTCATCTCTTCAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTT
* * *
1600488 CAAGATTGGGATCCGAAAACATATTCTCTTCATTTA-GATACATGACATTGATGCTTTAGTATCG
771 CAAGATTGGGATCCAAAAACACATTCTCTTCA-TTAGGATACATGACATTGATGCTTTGGTATCG
* *
1600552 CAAGAAAAGCTTTTTTTCCACCACTTTTT-ATAAAAGT-AAAGTTTGTCTCTTAAATGAGACAAA
835 CAAGAAAAGCTTTTTTTCCACCA-TTTTTGATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAA
* * ** *
1600615 TATGAATAGTCATGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAGATGTA
898 CATGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTA
* * * *
1600669 GTCCTCTCATTTGGATACATGATTTTGGTGCTTTGGTTTCACAAGAAAGG-TTTTTTTCCACCAA
1 GTCTTCTCATTAGGATACACGATTTTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* * *
1600733 TTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCAAAACGTGGGTTCTAGTATTGATCTTCATT
66 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATT
* * * * * *
1600798 CATTTTGTGATTAAACACTATAAAGACATTTTCCTTATAAAGATTAATGATATTGATGATTTTCT
131 CATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCT
* ** * *
1600863 TTTACATGGAAATCTTTTCTTTACCCTATTTCCCTTAAAAT-TAATTTCATCCCTCAAATAAGAT
196 TTTGCATGGAAATCTTTTCTTTACCCTATTTTACTTAAAATCTAAGTTCATCCCTTAAATAAGAT
* *
1600927 AAACATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTAGGATCCAAAAACACATTCTCTTC
261 AAGCATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGATCCAAAAACACATTCTCTTC
* * *
1600992 ATTAGGATACTTGACATTGATACTTTGGTGCCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
326 ATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * * *
1601057 AGAATCAAAATTTGTCTCTTAATTATGACAAAGAAGAATACTCATACTATTCCCTATTCTTTTCA
391 AGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCATACTATTCCCCATTCTTTTCA
* * * *
1601122 AGATTAGGCACTTTAAGCATAGTCTTCTAATTAGGATACAAGATATTAATGCTTTGATTTCGAAA
456 AGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGATTTCGAAA
* * *
1601187 GAAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGG
521 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACGTGG
* * *
1601252 ATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGTACTATAAAAACATTCTCCTCATTAAGAT
586 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGAT
* *
1601317 TAATGATATTGATGATTTTCTTTCGCATGGAAA-TCTTTCGTTTGCCCTATTTTTCTTAAAATCA
651 TAATGATATTGATGATTTTCTTTTGCATGGAAATTCTTTC-TTTGCCCTATTTTCCTTAAAATCA
* * *
1601381 AAGTTCATCTCTT-AAGTAAGACAAGCATTGATTCTCGTAATAATCTCCATTCTTTTCAAGATTG
715 AAGTTCATCTCTTCAA-TAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
* * * * * * * **
1601445 GGATCCAAAAACATATTCTTTTCATTAGAATACAAGGCATTAATGCTTTGGTGTCAG-AAGAGGA
779 GGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTATC-GCAAGAAAA
* * * * *
1601509 GCTTTTTTTCCACCTTTTTTGATAGAATTATAAGTTTATCTCTTAAATAAGATAAACATAAATAG
843 GCTTTTTTTCCACCATTTTTGATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAACATGAATAG
*
1601574 TCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTG
907 TCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTA
* * * * * * *
1601619 GTCTTCTC-TTAAAGATACCCGATATTGATGCTTTGGTTTCATAATAAAGGCTTTCTTCCCACCA
1 GTCTTCTCATT-AGGATACACGATTTTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCA
* * *
1601683 ATTTTGGTAAAGTCTAAGTTCGTG-CTCAAATAAGCCAAACGTGGATTCTAGTATTGAT-TTTAT
65 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT
* * *
1601746 TCATTTTGTGATTAGACACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGAATTTC
130 TCATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTC
* *
1601811 TTTTGCATGGAAAAT-TTTTCTTTGCCCTATGTTT-CTTAAAATCAAAGTTCATCCCTTAAATAA
195 TTTTGCATGG-AAATCTTTTCTTTACCCTAT-TTTACTTAAAATCTAAGTTCATCCCTTAAATAA
* * * * * *
1601874 AATAAGCATCAATTCTCGCAACAATCTCCATTCTTTTTAAGATTGGCATCCAAAAACACATT-TC
258 GATAAGCATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGATCCAAAAACACATTCTC
* * * *
1601938 TTTCATTAGGATACATGACTTTGATGCTTTGGTATCACAAG--AA-CTTTTTTTTTCCCCCGTTT
323 -TTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC-TTTTCTTTCCACCGTTT
* * *
1602000 TTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAATATGAATACTCGTACTATTCCCCATTCT
386 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCATACTATTCCCCATTCT
* * *
1602065 TTTCAAGATTAGGCACTTTAAACAAAGTCTCCTCATTAGGATACACGATATTACTGCTTTGGA-T
451 TTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTT-GATT
* * *
1602129 TCGCAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAA
515 TCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAA
* * * * *
1602194 ATGTAGATTCTAGAATTGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCCTCAT
580 ACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT
* * * * *
1602259 TAGGATAAATGATATTAATGATTTT-TATTTGCATGAAAATTTTTTCTTTGCCCTATTTTCCTTA
645 TAAGATTAATGATATTGATGATTTTCT-TTTGCATGGAAATTCTTTCTTTGCCCTATTTTCCTTA
* * * *
1602323 AAATCAAAGTTTATCCCTTCAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTTAA
709 AAATCAAAGTTCATCTCTTCAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAA
* * * * * *
1602388 GATTGGGATCCAAAAACACATTCCCTTCATTAGGGTGCATGATATTGGTGCATTGGTATCGCAAG
774 GATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTATCGCAAG
** * * * *
1602453 AAAATATTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAATCATGAA
839 AAAAGCTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * *
1602518 TAGTCGTACTAAT-CCCATTCTTTTCGGGAATAGGCATCATAAATGTA
904 TAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTA
* * * * *
1602565 GTCTTTTCGTTACGATACACCATTTTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA
1 GTCTTCTCATTAGGATACACGATTTTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* * * * *
1602630 TTTTTGTAAAGTCTACA-TTCGTGCCTCAAATCAGCCAAGCATGGATTCTAGTTTTGTTCTTCAT
66 TTTTTGTAAAGTCTA-AGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT
* * * *
1602694 TTATTTTGTGATTAGGCAGTATAAA-ACATTCTCCTCATTAAGATTAATGATATTGATGATTTTT
130 TCATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGA--TTT
* * * *
1602758 TTTTTTGCGTGGAAATCTTTTCTTTACCTTATTTTACTTAATATCGT-AGTTCATCCCTTAAATA
193 TCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTACTTAAAATC-TAAGTTCATCCCTTAAATA
* * * * *
1602822 TGACAAGCATCGATTCTCATAACAATCTCCTTTCTTTTCAAGATTGGGATCCAAAAACACATTCT
257 AGATAAGCATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGATCCAAAAACACATTCT
* * * *
1602887 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAATGGTTTTCTTTCCAACATTTT
322 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTT
* * *
1602952 TGATAGAAACAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATATTATTCCCCATTCTT
387 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCATACTATTCCCCATTCTT
* * * * * *
1603017 TTCAAGATTAGGCACTTTAAACACAATATTCTCATTAGGATACACGATAGTGGTGCTTTGGTTTC
452 TTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGATTTC
* * * *
1603082 GTAAGAAAGGCTTTTTTCCTACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAAATGAGCGAAAC
517 GAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAAC
1603147 GTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTA
582 GTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTA
* * *
1603212 AGATTAATGATATTGATGATTTTATTTAGCAT-GAAATCTCTTTTTTTTGCCCTATTTTCCTTAA
647 AGATTAATGATATTGATGATTTTCTTTTGCATGGAAAT-TC-TTTCTTTGCCCTATTTTCCTTAA
* * * * *
1603276 AATCAAAGTTCAACTCTTAAATAACACAGGCATCGATTCTCATATCAATCTCCATTCTTTTCAAG
710 AATCAAAGTTCATCTCTTCAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAG
* *
1603341 ATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAAA
775 ATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTATCGC--AA
* * * * * *
1603406 AAAAAGCTTTTGTTTCGATCATTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGATAAACTTG
838 GAAAAGCTTTT-TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
1603471 AATACTCATACTATTCTCCATTCTTTTC
902 AATAGTCATACTAATCCCCATTCTTTTC
1603499 AGGGTTAAGT
Statistics
Matches: 2437, Mismatches: 346, Indels: 90
0.85 0.12 0.03
Matches are distributed among these distances:
946 103 0.04
947 105 0.04
948 512 0.21
949 732 0.30
950 424 0.17
951 309 0.13
952 173 0.07
953 2 0.00
954 10 0.00
955 56 0.02
956 11 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (951 bp):
GTCTTCTCATTAGGATACACGATTTTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATT
CATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCT
TTTGCATGGAAATCTTTTCTTTACCCTATTTTACTTAAAATCTAAGTTCATCCCTTAAATAAGAT
AAGCATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGATCCAAAAACACATTCTCTTC
ATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCATACTATTCCCCATTCTTTTCA
AGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTAGTGCTTTGATTTCGAAA
GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACGTGG
ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGAT
TAATGATATTGATGATTTTCTTTTGCATGGAAATTCTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATCTCTTCAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGG
ATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTATCGCAAGAAAAGCT
TTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
ACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTA
Found at i:1603022 original size:159 final size:156
Alignment explanation
Indices: 1602847--1603499 Score: 384
Period size: 160 Copynumber: 4.1 Consensus size: 156
1602837 CTCATAACAA
* * *
1602847 TCTCCTTTCTTTTCAAGATT-GGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGA
1 TCTCCATTCTTTTCAAGATTAGGCA-CCAAAAACACATTCTCTTCATTAGGATACATGACAGTGA
*
1602911 TGCTTTGGTGTCACAAGAAATGGTTTTCTTTCCAACATTTTTGATAGAAACAAAGTTTGTCTCTT
65 TGCTTTGGTGTCACAAGAAATGCTTTT-TTTCC-ACATTTTTGATA-AAACAAAGTTTGTCTCTT
1602976 AAATAAGACAAACATGAATACTCATATTAT
127 AAATAAGACAAACATGAATACTCATATTAT
* *** * *
1603006 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACACAATAT-TC-TCATTAGGATACACGATAGTG
1 TCTCCATTCTTTTCAAGATTAGGCACCAAAAACAC-AT-TCTCTTCATTAGGATACATGACAGTG
* * ** * * * * *
1603069 GTGCTTTGGTTTCGTAAGAAAGGC-TTTTTTCCTACCAATTTTGGTAAAGTCTAAGTTCATG-C-
64 ATGCTTTGGTGTCACAAGAAATGCTTTTTTTCC-A-CATTTTTGATAAA-ACAAAGTT--TGTCT
* * * * *
1603131 CTCAAATGAG-CGAAACGTGGATTCT-AGTATTGA-
124 CTTAAATAAGAC-AAACATGAATACTCA-TATT-AT
* ** * * * * *
1603164 TCTTCATTCATTTT-GTGATTAGGCACTATAAAA-ACATTCTCCTCATTAAGATTA-ATGATATT
1 TCTCCATTC-TTTTCAAGATTAGGCACCA-AAAACACATTCTCTTCATTAGGA-TACATGACAGT
* ** * * * *** ***
1603226 GATGATTTTAT-TTAGCATGAAATCTCTTTTTTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAA
63 GATGCTTTGGTGTCA-CAAGAAAT-GC-TTTTTTT-CCAC-ATTTTTGATAAAA-CAAAGTTTGT
* ** * * *
1603289 CTCTTAAATAACACAGGCATCG-ATTCTCATATCAA
122 CTCTTAAATAAGACAAACAT-GAATACTCATATTAT
*
1603324 TCTCCATTCTTTTCAAGATT-GGGATCCAAAAACACATTCTCTTCATTAGGATACATGACAGTGA
1 TCTCCATTCTTTTCAAGATTAGGCA-CCAAAAACACATTCTCTTCATTAGGATACATGACAGTGA
* * * * * *
1603388 TGCTTTGGTGTCGCAAAAAAAAAGCTTTTGTTTCGATCATTTTTGATAGAATCAAAATTTGTCTC
65 TGCTTTGGTGT--CACAAGAAATGCTTTT-TTTCCA-CATTTTTGATA-AAACAAAGTTTGTCTC
* * *
1603453 TTAAATAAGATAAACTTGAATACTCATACTAT
125 TTAAATAAGACAAACATGAATACTCATATTAT
1603485 TCTCCATTCTTTTCA
1 TCTCCATTCTTTTCA
1603500 GGGTTAAGTG
Statistics
Matches: 359, Mismatches: 95, Indels: 78
0.67 0.18 0.15
Matches are distributed among these distances:
156 1 0.00
157 15 0.04
158 86 0.24
159 89 0.25
160 91 0.25
161 67 0.19
162 9 0.03
163 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (156 bp):
TCTCCATTCTTTTCAAGATTAGGCACCAAAAACACATTCTCTTCATTAGGATACATGACAGTGAT
GCTTTGGTGTCACAAGAAATGCTTTTTTTCCACATTTTTGATAAAACAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATACTCATATTAT
Found at i:1604617 original size:16 final size:16
Alignment explanation
Indices: 1604596--1604646 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
1604586 ATATGATTTG
1604596 TTTAGGAAAACTGAAA
1 TTTAGGAAAACTGAAA
1604612 TTTAGGAAAA-T-ATTAA
1 TTTAGGAAAACTGA--AA
1604628 TTTAGGAAAACTGAAA
1 TTTAGGAAAACTGAAA
1604644 TTT
1 TTT
1604647 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.03
15 1 0.03
16 27 0.87
17 1 0.03
18 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33
Consensus pattern (16 bp):
TTTAGGAAAACTGAAA
Found at i:1605034 original size:22 final size:22
Alignment explanation
Indices: 1605006--1605050 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
1604996 AGTCCCTATC
1605006 TTTTCCAATGTTTGTATTTTAG
1 TTTTCCAATGTTTGTATTTTAG
1605028 TTTTCCAATGTTTGTATTTTAG
1 TTTTCCAATGTTTGTATTTTAG
1605050 T
1 T
1605051 CCTTAACGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.09, G:0.13, T:0.60
Consensus pattern (22 bp):
TTTTCCAATGTTTGTATTTTAG
Found at i:1605823 original size:12 final size:12
Alignment explanation
Indices: 1605806--1605857 Score: 86
Period size: 12 Copynumber: 4.2 Consensus size: 12
1605796 CTATTCATGC
1605806 TTGGAGCTACTG
1 TTGGAGCTACTG
1605818 TTGGAGCTACTG
1 TTGGAGCTACTG
1605830 TTGGAGCTACTTG
1 TTGGAGCTAC-TG
*
1605843 TTGGAGCTGCTG
1 TTGGAGCTACTG
1605855 TTG
1 TTG
1605858 CTGCTGCCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
12 27 0.71
13 11 0.29
ACGTcount: A:0.13, C:0.15, G:0.35, T:0.37
Consensus pattern (12 bp):
TTGGAGCTACTG
Found at i:1605850 original size:25 final size:24
Alignment explanation
Indices: 1605806--1605857 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
1605796 CTATTCATGC
1605806 TTGGAGCTACTGTTGGAGCTACTG
1 TTGGAGCTACTGTTGGAGCTACTG
*
1605830 TTGGAGCTACTTGTTGGAGCTGCTG
1 TTGGAGCTAC-TGTTGGAGCTACTG
1605855 TTG
1 TTG
1605858 CTGCTGCCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.13, C:0.15, G:0.35, T:0.37
Consensus pattern (24 bp):
TTGGAGCTACTGTTGGAGCTACTG
Found at i:1606532 original size:19 final size:19
Alignment explanation
Indices: 1606492--1606534 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
1606482 TTTCTATATA
*
1606492 AATGC-ATGAAATGAAAGT
1 AATGCAATGAAATGAAAGG
*
1606510 AATGCAATGAAATGAATGG
1 AATGCAATGAAATGAAAGG
1606529 AATGCA
1 AATGCA
1606535 TCAAATGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21
Consensus pattern (19 bp):
AATGCAATGAAATGAAAGG
Found at i:1606769 original size:21 final size:21
Alignment explanation
Indices: 1606739--1606786 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
1606729 TATGGCTCCC
1606739 TTTTTTTTTTAGTTTGATT-T
1 TTTTTTTTTTAGTTTGATTAT
* *
1606759 TTTTATTTTTTATTTTTATTAT
1 TTTT-TTTTTTAGTTTGATTAT
1606781 TTTTTT
1 TTTTTT
1606787 ACTTATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.17
21 15 0.62
22 5 0.21
ACGTcount: A:0.12, C:0.00, G:0.04, T:0.83
Consensus pattern (21 bp):
TTTTTTTTTTAGTTTGATTAT
Found at i:1606780 original size:9 final size:8
Alignment explanation
Indices: 1606755--1606787 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
1606745 TTTTAGTTTG
1606755 ATTTTTTT
1 ATTTTTTT
1606763 A-TTTTTT
1 ATTTTTTT
1606770 ATTTTTATT
1 ATTTTT-TT
1606779 ATTTTTTT
1 ATTTTTTT
1606787 A
1 A
1606788 CTTATTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
8 8 0.35
9 8 0.35
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (8 bp):
ATTTTTTT
Found at i:1607302 original size:42 final size:42
Alignment explanation
Indices: 1607255--1608340 Score: 456
Period size: 43 Copynumber: 25.5 Consensus size: 42
1607245 AGATTCTCTC
* * *
1607255 GGGTCAAAGCCGATAAGTAGAATTTAGATAAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
** * *
1607297 GGGTCAAAGTTGACAGGCAGAC-TTAGGGAT-AGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
1607340 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * ** * *
1607382 GGGTCAAAGCCGATAAGTAGACTAAAGGAT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTA-GATAAGG-CAGTCTCCA
* * * *
1607425 GGGTTAAAGCCGATAGGCAGACTTTAGATAAAGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
** *
1607467 GGGTCAAAGCCGATAGGCAGAC-CGAGGGAT-AGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* ** * * * *
1607510 AGGTCAAAGTAGACAGGAAGAC-TGAGGGAT-AGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* * * **
1607553 GGGTCAAAGTCGATAGGCAGACTTAAGATGAGATAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * * * * **
1607595 AGGTTAAAGCTGACAGGCAGAC-TGAGGGTAAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTA-GATAAGGCAGTCTCCA
* ** * * * *
1607637 AGGTCAAAGCTAACAGGAAAACTTTAGATAAGGCTGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * *
1607679 GGGTCAAAGCTGATAGGCAGAC-TAAGGGAT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
** * * *
1607722 GGGTCAAAGCTAACAGGCAGAC-TGAGGGAT-AGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* * * * * * *
1607765 GGATCAAAACCAACAGGCAGACTTTAGATGAGGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * * * *
1607807 GGCTCAAAACCGATAGGCAAAC-TGAGGGAT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* * * * **
1607850 GGGTCAAAACCAATAGACAGACTTTAGATAAGGTAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * **
1607892 GGGTCAAAGCTGATAGGAAGAC-TGAGGGATAAGAAAGTCTCTC-
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGGCAGTCTC-CA
** * * *** * *
1607935 GAATCAAAGCTGATAGACAGACTGGGGGAT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACT-TTAGATAAGG-CAGTCTCCA
* * * *
1607978 GGGTCAAAGCCGACAGGCAGACTTCAGATGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * * *
1608020 AGGTAAAAGCCGACAGGCAGACTTTAGATAAGGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * * *
1608062 GGGTCACAGTCGATAGGCAGAC-TGAGGGAT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* * ** * *
1608105 GGGTCAAAGCCGACAAGCAGACTATGGGAT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACT-TTAGATAAGG-CAGTCTCCA
* ** * *
1608148 AGGTCAAAATCGATAGGTAGACTTTAGATAAGGCAGACTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * * * * * * * *
1608190 TGATCAAAGCTGAAAGACAGAC-TGAGGGAT-AGGAAAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* * *
1608233 GGGTCAAAGCCGATAAGCAGAC-TGAGGGAT-AGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCA
* * * * * *
1608276 AGGTGAAAGCCAACAGGCAGACTTTAGATGATGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
* * *
1608318 AGGTCAAAGCCGACAAGCAGACT
1 GGGTCAAAGCCGATAGGCAGACT
1608341 AAGGGCAGGA
Statistics
Matches: 812, Mismatches: 188, Indels: 88
0.75 0.17 0.08
Matches are distributed among these distances:
41 16 0.02
42 361 0.44
43 421 0.52
44 11 0.01
45 3 0.00
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (42 bp):
GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCA
Found at i:1607404 original size:85 final size:85
Alignment explanation
Indices: 1607255--1608385 Score: 773
Period size: 85 Copynumber: 13.3 Consensus size: 85
1607245 AGATTCTCTC
* * * * * * ** *
1607255 GGGTCAAAGCCGATAAGTAGAATTTAGATAAGGCAGTCTCCAGGGTCAAAGTTGACAGGCAGACT
1 GGGTCAAAGCCGACAGGCAGACTTTAGATAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
*
1607320 TAGGGATAGGAAAGTCTCCA
66 GAGGGATAGGAAAGTCTCCA
* * * * *
1607340 GGGTCAAAGCCGATAGGCAGACTTTAGATAAGGCAGTCTCCAGGGTCAAAGCCGATAAGTAGACT
1 GGGTCAAAGCCGACAGGCAGACTTTAGATAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
* * *
1607405 AAAGGATAGGAAAGTCTCTA
66 GAGGGATAGGAAAGTCTCCA
* * *
1607425 GGGTTAAAGCCGATAGGCAGACTTTAGATAAAGCAA-TCTCTAGGGTCAAAGCCGATAGGCAGAC
1 GGGTCAAAGCCGACAGGCAGACTTTAGAT-AAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGAC
*
1607489 CGAGGGATAGGAAAGTCTCCA
65 TGAGGGATAGGAAAGTCTCCA
* ** * * * *
1607510 AGGTCAAAGTAGACAGGAAGAC-TGAGGGAT-AGGAAAGTCTCCAGGGTCAAAGTCGATAGGCAG
1 GGGTCAAAGCCGACAGGCAGACTTTA--GATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAG
* * *
1607573 ACTTA-AGAT-GAGATAGTCTCCA
63 ACTGAGGGATAG-GAAAGTCTCCA
* * * * * * * * ** * * *
1607595 AGGTTAAAGCTGACAGGCAGAC-TGAGGGTAAGAAAGTCTCCAAGGTCAAAGCTAACAGGAAAAC
1 GGGTCAAAGCCGACAGGCAGACTTTA-GATAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGAC
* **
1607659 TTTA--GATAAGG-CTGTCTCCA
65 -TGAGGGAT-AGGAAAGTCTCCA
* * * ** *
1607679 GGGTCAAAGCTGATAGGCAGAC-TAAGGGAT-AGGAAAGTCTCTAGGGTCAAAGCTAACAGGCAG
1 GGGTCAAAGCCGACAGGCAGACTTTA--GATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAG
1607742 ACTGAGGGATAGGAAAGTCTCCA
63 ACTGAGGGATAGGAAAGTCTCCA
* * * * * * *
1607765 GGATCAAAACCAACAGGCAGACTTTAGATGAGGCAA-TCTCTAGGCTCAAAACCGATAGGCAAAC
1 GGGTCAAAGCCGACAGGCAGACTTTAGATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAGAC
*
1607829 TGAGGGATAGGAAAGTCTCTA
65 TGAGGGATAGGAAAGTCTCCA
* * * * * * * *
1607850 GGGTCAAAACCAATAGACAGACTTTAGATAAGGTAGTCTTTAGGGTCAAAGCTGATAGGAAGACT
1 GGGTCAAAGCCGACAGGCAGACTTTAGATAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
*
1607915 GAGGGATAAGAAAGTCTCTC-
66 GAGGGATAGGAAAGTCTC-CA
** * * * *** *
1607935 GAATCAAAGCTGATAGACAGACTGGGGGAT-AGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGA
1 GGGTCAAAGCCGACAGGCAGACT-TTAGATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAGA
* *
1607999 CTTCA--GATGAGG-TAGTCTCCA
64 C-TGAGGGAT-AGGAAAGTCTCCA
* * * *
1608020 AGGTAAAAGCCGACAGGCAGACTTTAGATAAGGCAA-TCTCTAGGGTCACAGTCGATAGGCAGAC
1 GGGTCAAAGCCGACAGGCAGACTTTAGATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAGAC
*
1608084 TGAGGGATAGGAAAGTCTCTA
65 TGAGGGATAGGAAAGTCTCCA
* ** * ** *
1608105 GGGTCAAAGCCGACAAGCAGACTATGGGAT-AGGAAAGTCTCTAAGGTCAAAATCGATAGGTAGA
1 GGGTCAAAGCCGACAGGCAGACT-TTAGATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAGA
* * *
1608169 CTTTA--GATAAGG-CAGACTCCA
64 C-TGAGGGAT-AGGAAAGTCTCCA
* * * * * * * *
1608190 TGATCAAAGCTGAAAGACAGAC-TGAGGGAT-AGGAAAGTTTCTAGGGTCAAAGCCGATAAGCAG
1 GGGTCAAAGCCGACAGGCAGACTTTA--GATAAGG-AAGTCTCTAGGGTCAAAGCCGATAGGCAG
1608253 ACTGAGGGATAGGAAAGTCTCCA
63 ACTGAGGGATAGGAAAGTCTCCA
* * * * * * * * * *
1608276 AGGTGAAAGCCAACAGGCAGACTTTAGATGATGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACT
1 GGGTCAAAGCCGACAGGCAGACTTTAGATAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
* * **
1608341 AAGGG-CAGGAAAGTCTTTA
66 GAGGGATAGGAAAGTCTCCA
* *
1608360 GGGTCAAAGCCGACAGACAAACTTTA
1 GGGTCAAAGCCGACAGGCAGACTTTA
1608386 AAATAGAAAA
Statistics
Matches: 831, Mismatches: 176, Indels: 79
0.77 0.16 0.07
Matches are distributed among these distances:
83 4 0.00
84 134 0.16
85 529 0.64
86 156 0.19
87 8 0.01
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (85 bp):
GGGTCAAAGCCGACAGGCAGACTTTAGATAAGGAAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
GAGGGATAGGAAAGTCTCCA
Found at i:1607688 original size:84 final size:85
Alignment explanation
Indices: 1607502--1607738 Score: 284
Period size: 84 Copynumber: 2.8 Consensus size: 85
1607492 GGGATAGGAA
* *
1607502 AGTCTCCAAGGTCAAAG-TAGACAGGAAGACTGAGGGATAGGAAAGTCTCCAGGGTCAAAG-TCG
1 AGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAGGGATAGGAAAGTCTCCAGGGTCAAAGCT-A
* * * *
1607565 ATAGGCAGACTTAAGATGAGAT
64 ACAGGAAAACTTAAGATAAGAT
* * *
1607587 AGTCTCCAAGGTTAAAGCTGACAGGCAGACTGAGGG-TAAGAAAGTCTCCAAGGTCAAAGCTAAC
1 AGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAGGGATAGGAAAGTCTCCAGGGTCAAAGCTAAC
* *
1607651 AGGAAAACTTTAGATAAGGCT
66 AGGAAAACTTAAGATAA-GAT
* * * *
1607672 -GTCTCCAGGGTCAAAGCTGATAGGCAGACTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCTAAC
1 AGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAGGGATAGGAAAGTCTCCAGGGTCAAAGCTAAC
1607736 AGG
66 AGG
1607739 CAGACTGAGG
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
84 66 0.51
85 63 0.48
86 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (85 bp):
AGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAGGGATAGGAAAGTCTCCAGGGTCAAAGCTAAC
AGGAAAACTTAAGATAAGAT
Found at i:1607790 original size:128 final size:128
Alignment explanation
Indices: 1607277--1608375 Score: 866
Period size: 128 Copynumber: 8.6 Consensus size: 128
1607267 ATAAGTAGAA
* * * *
1607277 TTTAGATAAGGCAGTCTCCAGGGTCAAAGTTGACAGGCAGACTTAGGGATAGGAAAGTCTCCAGG
1 TTTAGATAAGGCAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCTAGG
* * * * * * * * *
1607342 GTCAAAGCCGATAGGCAGACTTTA--GATAAGG-CAGTCTCCAGGGTCAAAGCCGATAAGTAGAC
66 GTCAAAGCCGACAGGCAGAC-TGAGGGAT-AGGAAAGTCTCCAAGGTCAAAACCAACAGGAAGAC
** * * * * * * *
1607404 TAAAGGAT-AGGAAAGTCTCTAGGGTTAAAGCCGATAGGCAGACTTTA--GATAAAGCAA-TCTC
1 TTTA-GATAAGG-CAGTCTCCAGGGTCAAAGCTGATAGGCAGAC-TGAGGGAT-AGGAAAGTCTC
* * **
1607465 TAGGGTCAAAGCCGATAGGCAGACCGAGGGATAGGAAAGTCTCCAAGGTC-AAAGTAGACAGGAA
62 TAGGGTCAAAGCCGACAGGCAGACTGAGGGATAGGAAAGTCTCCAAGGTCAAAACCA-ACAGGAA
1607529 GAC
126 GAC
* * * * *
1607532 -TGAGGGAT-AGGAAAGTCTCCAGGGTCAAAG-TCGATAGGCAGACTTA-AGAT-GAGATAGTCT
1 TTTA--GATAAGG-CAGTCTCCAGGGTCAAAGCT-GATAGGCAGACTGAGGGATAG-GAAAGTCT
* * * * * * *
1607592 CCAAGGTTAAAGCTGACAGGCAGACTGAGGG-TAAGAAAGTCTCCAAGGTCAAAGCTAACAGGAA
61 CTAGGGTCAAAGCCGACAGGCAGACTGAGGGATAGGAAAGTCTCCAAGGTCAAAACCAACAGGAA
*
1607656 AAC
126 GAC
* *
1607659 TTTAGATAAGGCTGTCTCCAGGGTCAAAGCTGATAGGCAGACTAAGGGATAGGAAAGTCTCTAGG
1 TTTAGATAAGGCAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCTAGG
** *
1607724 GTCAAAGCTAACAGGCAGACTGAGGGATAGGAAAGTCTCC-AGGATCAAAACCAACAGGCAGAC
66 GTCAAAGCCGACAGGCAGACTGAGGGATAGGAAAGTCTCCAAGG-TCAAAACCAACAGGAAGAC
* * * * * * *
1607787 TTTAGATGAGGCAATCTCTAGGCTCAAAACCGATAGGCAAACTGAGGGATAGGAAAGTCTCTAGG
1 TTTAGATAAGGCAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCTAGG
* * * * * * ** * * ** *
1607852 GTCAAAACCAATAGACAGACTTTA--GATAAGG-TAGTCTTTAGGGTCAAAGCTGATAGGAAGAC
66 GTCAAAGCCGACAGGCAGAC-TGAGGGAT-AGGAAAGTCTCCAAGGTCAAAACCAACAGGAAGAC
* ** ** * *
1607914 -TGAGGGATAAGAAAGTCTCTC-GAATCAAAGCTGATAGACAGACTGGGGGATAGGAAAGTCTCT
1 TTTA--GATAAGGCAGTCTC-CAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCT
* * * *
1607977 AGGGTCAAAGCCGACAGGCAGACTTCA--GATGAGG-TAGTCTCCAAGGT-AAAAGCCGACAGGC
63 AGGGTCAAAGCCGACAGGCAGAC-TGAGGGAT-AGGAAAGTCTCCAAGGTCAAAA-CCAACAGGA
1608038 AGAC
125 AGAC
* * *
1608042 TTTAGATAAGGCAATCTCTAGGGTCACAG-TCGATAGGCAGACTGAGGGATAGGAAAGTCTCTAG
1 TTTAGATAAGGCAGTCTCCAGGGTCAAAGCT-GATAGGCAGACTGAGGGATAGGAAAGTCTCTAG
* * * * * *
1608106 GGTCAAAGCCGACAAGCAGACT-ATGGGATAGGAAAGTCTCTAAGGTCAAAATCGATAGGTAGAC
65 GGTCAAAGCCGACAGGCAGACTGA-GGGATAGGAAAGTCTCCAAGGTCAAAACCAACAGGAAGAC
* * * * * *
1608170 TTTAGATAAGGCAGACTCCATGATCAAAGCTGAAAGACAGACTGAGGGATAGGAAAGTTTCTAGG
1 TTTAGATAAGGCAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCTAGG
* * * * *
1608235 GTCAAAGCCGATAAGCAGACTGAGGGATAGGAAAGTCTCCAAGGTGAAAGCCAACAGGCAGAC
66 GTCAAAGCCGACAGGCAGACTGAGGGATAGGAAAGTCTCCAAGGTCAAAACCAACAGGAAGAC
* * * * * * * * *
1608298 TTTAGATGATGCAGTCTCCAAGGTCAAAGCCGACAAGCAGACTAAGGG-CAGGAAAGTCTTTAGG
1 TTTAGATAAGGCAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCTAGG
1608362 GTCAAAGCCGACAG
66 GTCAAAGCCGACAG
1608376 ACAAACTTTA
Statistics
Matches: 782, Mismatches: 152, Indels: 76
0.77 0.15 0.08
Matches are distributed among these distances:
125 1 0.00
126 37 0.05
127 238 0.30
128 493 0.63
129 13 0.02
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (128 bp):
TTTAGATAAGGCAGTCTCCAGGGTCAAAGCTGATAGGCAGACTGAGGGATAGGAAAGTCTCTAGG
GTCAAAGCCGACAGGCAGACTGAGGGATAGGAAAGTCTCCAAGGTCAAAACCAACAGGAAGAC
Found at i:1619252 original size:13 final size:13
Alignment explanation
Indices: 1619234--1619259 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1619224 CAATTTTTTG
1619234 TGTATCGATACAT
1 TGTATCGATACAT
1619247 TGTATCGATACAT
1 TGTATCGATACAT
1619260 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1619343 original size:20 final size:20
Alignment explanation
Indices: 1619298--1619373 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
1619288 CTGCCAAGAA
***
1619298 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
1619319 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
1619339 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
*
1619359 GTGTATCGATACATT
1 ATGTATCGATACATT
1619374 TAAGGGTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:1619998 original size:21 final size:21
Alignment explanation
Indices: 1619957--1620000 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1619947 CTCTCCTTTA
* *
1619957 TCTCCCCCATTTATTAATAAT
1 TCTCCCCCATTAATCAATAAT
1619978 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCATTAATCAA-TAAT
1619999 TC
1 TC
1620001 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.32, G:0.02, T:0.39
Consensus pattern (21 bp):
TCTCCCCCATTAATCAATAAT
Found at i:1621664 original size:21 final size:21
Alignment explanation
Indices: 1621640--1621708 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 21
1621630 TTTTATGCTG
1621640 ATTTTGATGAAAAACGAAGTT
1 ATTTTGATGAAAAACGAAGTT
*
1621661 ATTTGAGATGAAAAACGAAGTT
1 ATTT-TGATGAAAAACGAAGTT
1621683 A-TTTGAAGTGAAAAAC-AAG-T
1 ATTTTG-A-TGAAAAACGAAGTT
1621703 ATTTTG
1 ATTTTG
1621709 CAAAAGATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 3 0.07
21 14 0.33
22 25 0.60
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGATGAAAAACGAAGTT
Found at i:1621697 original size:23 final size:22
Alignment explanation
Indices: 1621645--1621706 Score: 94
Period size: 22 Copynumber: 2.9 Consensus size: 22
1621635 TGCTGATTTT
1621645 GATGAAAAACGAAGTTATTTGA
1 GATGAAAAACGAAGTTATTTGA
1621667 GATGAAAAACGAAGTTATTTGA
1 GATGAAAAACGAAGTTATTTGA
1621689 -AGTGAAAAAC-AAG-TATTT
1 GA-TGAAAAACGAAGTTATTT
1621707 TGCAAAAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.13
21 4 0.10
22 30 0.77
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.27
Consensus pattern (22 bp):
GATGAAAAACGAAGTTATTTGA
Found at i:1621847 original size:13 final size:13
Alignment explanation
Indices: 1621829--1621854 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1621819 ATAATCACCC
1621829 TGTATCGATACAA
1 TGTATCGATACAA
1621842 TGTATCGATACAA
1 TGTATCGATACAA
1621855 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1623118 original size:15 final size:15
Alignment explanation
Indices: 1623098--1623128 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1623088 ATTTTGTTTG
*
1623098 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1623113 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1623128 G
1 G
1623129 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1624960 original size:21 final size:21
Alignment explanation
Indices: 1624931--1624975 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1624921 AAGTTTTCAT
*
1624931 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1624951 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1624973 TTT
1 TTT
1624976 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1626597 original size:13 final size:13
Alignment explanation
Indices: 1626579--1626604 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1626569 ATTTGTAGAA
1626579 TGTATCGATACAT
1 TGTATCGATACAT
1626592 TGTATCGATACAT
1 TGTATCGATACAT
1626605 CAATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1629033 original size:51 final size:51
Alignment explanation
Indices: 1628973--1629090 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 51
1628963 ATTTTTCATC
* *
1628973 TCGGGGATACTCCAACTCCGATTTTATGTCTAAAACACTC-A-TTTTCCATAA
1 TCGGGGATACTCCAACTCCGATTTTATGTCCAAAACAC-CGACTTTT-CACAA
* *
1629024 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGACTTTTCACCA
1 TCGGGGATACTCCAACTCCGATTTTATGTCCAAAACACCGACTTTTCACAA
1629075 TCGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
1629091 CCCGTTATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
50 1 0.02
51 56 0.92
52 4 0.07
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATGTCCAAAACACCGACTTTTCACAA
Found at i:1629166 original size:79 final size:79
Alignment explanation
Indices: 1629075--1629358 Score: 321
Period size: 79 Copynumber: 3.6 Consensus size: 79
1629065 CTTTTCACCA
* *
1629075 TCGGGGATACTCCAACCCCGTTATTTTCGAGGGTATACCCCAACCCCGGCTTTATTTCTAAAATA
1 TCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATA
1629140 TTAATTTCTCATCG
66 TTAATTTCTCATCG
* *
1629154 TCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCTCGGCTTTATTTCTAAAAC
1 TCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGCTTTATTTCTAAAAT
* * *
1629218 ATCAAATTT-TTATAG
65 AT-TAATTTCTCATCG
* * * * *
1629233 TCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAATCTC-GATTATATTTCCTAATC
1 TCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTT-TATTT-CTAA-A
* *
1629297 ATCGATT--TTTCACAAC-
63 AT--ATTAATTTCTCATCG
*
1629313 -CGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCC
1 TCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC
1629359 ATTATTATCC
Statistics
Matches: 175, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
78 7 0.04
79 149 0.85
80 15 0.09
81 2 0.01
83 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (79 bp):
TCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATA
TTAATTTCTCATCG
Found at i:1635609 original size:55 final size:54
Alignment explanation
Indices: 1635511--1635619 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
1635501 CCTTTTTTCT
*
1635511 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTAAAAGAGCAGGACGCC
1 TTTTAAAGCACACACAAGTTGGTGGCACCTTTAGTCCTAAAAGAGCAGGACGCC
* *
1635565 TTTTAAAGCACACGCAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCACACACAAGTTGGTGGCACCTT--TAGTCCTAAAAGAGCAGGACGCC
1635620 CTCTCCTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
53 3 0.06
54 25 0.50
55 22 0.44
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (54 bp):
TTTTAAAGCACACACAAGTTGGTGGCACCTTTAGTCCTAAAAGAGCAGGACGCC
Found at i:1635930 original size:176 final size:170
Alignment explanation
Indices: 1635636--1636353 Score: 837
Period size: 176 Copynumber: 4.2 Consensus size: 170
1635626 TTTCACCCTT
* *
1635636 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT--AGTCCTCA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCA
* *
1635699 AAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGAC
65 AAAAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGAC
1635764 GCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC
130 GCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC
* * * *
1635805 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACGCTAGTCGGTGGCATTTTCTAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
* *
1635870 AAAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAGAGC
66 AAAGCAGG--A----TGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGC
* **
1635935 AGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCGTTTTCC
125 AGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC-ACTTCC
* * *
1635982 -AGTTCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
* * *
1636046 AAAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACA
66 AAAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
* * **
1636111 CCTCTTCCTTTTAAAGCATACACAAGTTGGTGGCACCTT--
131 CCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCC
* * * *
1636150 TAGTCCTCAAAAAGTAGGATGCCTTTTCCTTTTAAAGCCCACACATGTTGGTGGCATTTTCCAGT
1 TAGTCCTCAAAGAGCAGGACGCC-TTT-C----AAAGCCCACACAAGTTGGTGGCATTTTCCAGT
* * * * *
1636215 CCTCAAAGAGCAGGACGTCTTTTCTTTTCGAAGCCCACACGAGTTGGTGGTACCTTTCAGTCCTC
60 CCTCAAAAAGCAGGATG-C----CTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTC
* **
1636280 AAAGAGCAGGACGCC--TTTC----AAAGCCCACACGAGTTGGTGGCACTTTT
118 AAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC
1636327 TAGTCCTCAAAGAGCAGGACGCACTTT
1 TAGTCCTCAAAGAGCAGGACGC-CTTT
1636354 ATTTTCCTCT
Statistics
Matches: 473, Mismatches: 49, Indels: 46
0.83 0.09 0.08
Matches are distributed among these distances:
168 3 0.01
169 65 0.14
170 101 0.21
172 1 0.00
174 1 0.00
175 49 0.10
176 172 0.36
177 26 0.05
178 1 0.00
180 7 0.01
181 26 0.05
182 21 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (170 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
AAAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
CCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCC
Found at i:1635979 original size:27 final size:27
Alignment explanation
Indices: 1635949--1636034 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
1635939 TGCCTTTTTC
*
1635949 TTTTAAAGCCCACACAAGTTGGTGGCG
1 TTTTAAAGCCCACACAAGTTGGTGGCA
** ** * * * ** *
1635976 TTTTCCAGTTCTCAAAGAGTAGGACGCC
1 TTTTAAAGCCCACACA-AGTTGGTGGCA
1636004 TTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
1636031 TTTT
1 TTTT
1636035 CCAGTCCTCA
Statistics
Matches: 38, Mismatches: 20, Indels: 2
0.63 0.33 0.03
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (27 bp):
TTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:1636098 original size:230 final size:230
Alignment explanation
Indices: 1635657--1636346 Score: 948
Period size: 230 Copynumber: 3.0 Consensus size: 230
1635647 GAGCAGGACG
1635657 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATG-C----CTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTT
**
1635717 AAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAG
66 AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCC----TCTTTTAAAG
* * *
1635781 CCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACGCTAG
127 CCCACACAAGTTGGTGGCATTTCC-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAG
* * * *
1635846 TCGGTGGCATTTTCTAGTCCTCAAAAAGCAGGACACCTTTT
191 TTGGTGGCACTTT-TAGTCCTCAAAGAGCAGGACACCTCTT
*
1635887 CCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTCTTT
* * *
1635952 TAAAGCCCACACAAGTTGGTGGCGTTTTCCAGTTCTCAAAGAGTAGGACG-C-CTTTTAAAGCCC
65 TAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTCTTTTAAAGCCC
* *
1636015 ACACAAGTTGGTGGCATTTTCCAGTCCTCAAAAAGCAGGATGCCTTTCAAAGCCCACACGAGTTG
130 ACACAAGTTGGTGGCA-TTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTG
*
1636080 GTGGCACCTTTAGTCCTCAAAGAGCAGGACACCTCTT
194 GTGGCACTTTTAGTCCTCAAAGAGCAGGACACCTCTT
** * *
1636117 CCTTTTAAAGCATACACAAGTTGGTGGCACCTTTAGTCCTCAAAAAGTAGGATGCCTTTTCCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT-CTTT
* * *
1636182 TAAAGCCCACACATGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGTCTTTTCTTTTCGAA
65 TAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG-C--CTCTTTT-AAA
* *
1636247 GCCCACACGAGTTGGTGGTACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACG
126 GCCCACACAAGTTGGTGG--CATTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACG
1636311 AGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGAC
189 AGTTGGTGGCAC-TTTTAGTCCTCAAAGAGCAGGAC
1636347 GCACTTTATT
Statistics
Matches: 410, Mismatches: 32, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
229 4 0.01
230 179 0.44
231 75 0.18
232 4 0.01
235 5 0.01
236 98 0.24
237 44 0.11
238 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (230 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTT
AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTCTTTTAAAGCCCA
CACAAGTTGGTGGCATTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGT
GGCACTTTTAGTCCTCAAAGAGCAGGACACCTCTT
Found at i:1636263 original size:291 final size:282
Alignment explanation
Indices: 1635632--1636353 Score: 870
Period size: 291 Copynumber: 2.5 Consensus size: 282
1635622 CTCCTTTCAC
1635632 CCTTTAGTCCTCAAAGAGCAGGACGC----CTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-A
1 CCTTTAGTCCTCAAAGAGCAGGACGCTTTTCTTTTAAAGCCCACACAAGTTGGTGG--CCTTTCA
* **
1635692 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGA
64 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGA
1635757 GCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAG
129 GCAGGACGCC-TTTTC---TAAAGCCCACACAAGTTGGTGGCACTT-CTAGTCCTCAAAGAGCAG
* * * * **
1635822 GACGCCTTTCAAAGCCCACGCTAGTCGGTGGCATTTTCTAGTCCTCAAAAAGCAGGACACCTTTT
189 GACACCTTTCAAAGCACACACAAGTCGGTGGCACCTTCTAGTCCTCAAAAAGCAGGACACCTTTT
1635887 CCTTTTAAAGCCCACACAAGCTGGTGGCA
254 CCTTTTAAAGCCCACACAAGCTGGTGGCA
* *
1635916 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCGTTTTC
1 CCTTTAGTCCTCAAAGAGCAGGACG-C-TTTTCTTTTAAAGCCCACACAAGTTGGTGGC-CTTT-
* *
1635981 CAGTTCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAA
62 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAA
* * *
1636046 AAAGCAGGATGCC-TTTC-AAAGCCCACACGAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGG
126 AGAGCAGGACGCCTTTTCTAAAGCCCACACAAGTTGGTGGCA-CTTCTAGTCCTCAAAGAGCAGG
* * * **
1636108 ACACCTCTTCCTTTTAAAGCATACACAAGTTGGTGGCACCTT-TAGTCCTCAAAAAGTAGGATGC
190 ACACCT-TT-C----AAAGCACACACAAGTCGGTGGCACCTTCTAGTCCTCAAAAAGCAGGACAC
* *
1636172 CTTTTCCTTTTAAAGCCCACACATGTTGGTGGCA
249 CTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCA
* * *
1636206 -TTTTCCAGTCCTCAAAGAGCAGGACGTCTTTTCTTTTCGAAGCCCACACGAGTTGGTGGTACCT
1 CCTTT--AGTCCTCAAAGAGCAGGACG-CTTTTCTTTT-AAAGCCCACACAAGTTGGTGG--CCT
* * *
1636270 TTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTC
60 TTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTC
1636335 AAAGAGCAGGACGCACTTT
124 AAAGAGCAGGACGC-CTTT
1636354 ATTTTCCTCT
Statistics
Matches: 377, Mismatches: 36, Indels: 41
0.83 0.08 0.09
Matches are distributed among these distances:
284 24 0.06
285 24 0.06
286 24 0.06
287 4 0.01
288 1 0.00
289 6 0.02
290 90 0.24
291 172 0.46
292 29 0.08
293 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (282 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCCTTTCAGT
CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGC
AGGACGCCTTTTCTAAAGCCCACACAAGTTGGTGGCACTTCTAGTCCTCAAAGAGCAGGACACCT
TTCAAAGCACACACAAGTCGGTGGCACCTTCTAGTCCTCAAAAAGCAGGACACCTTTTCCTTTTA
AAGCCCACACAAGCTGGTGGCA
Found at i:1636429 original size:43 final size:42
Alignment explanation
Indices: 1636324--1636507 Score: 167
Period size: 42 Copynumber: 4.2 Consensus size: 42
1636314 TGGTGGCACT
1636324 TTTTAGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTC
1 TTTT-GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTC
* *
1636367 TTTTGTCCTCAAAGAGCAGGACGCATTTTGTTTTCCT-TTTC
1 TTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTC
* * *
1636408 TCATTTGTCCTCAAAGAGCAGGGCGCTCTTCA-TTTCCTTCTTTTCCC
1 T--TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--C
* * * * *
1636455 TTCTAGTCCTCAAAGAGCAAGACACA-TTTCATTTCCCTTTTTC
1 TT-TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTC
*
1636498 CTTTGTCCTC
1 TTTTGTCCTC
1636508 GAAAAATGGG
Statistics
Matches: 114, Mismatches: 17, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
41 5 0.04
42 43 0.38
43 31 0.27
45 9 0.08
46 20 0.18
47 6 0.05
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (42 bp):
TTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTC
Found at i:1637314 original size:19 final size:21
Alignment explanation
Indices: 1637271--1637322 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1637261 TTCAATAATT
1637271 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTCAGTAAA
1637292 TGTATCGATACATT-AGT-AA
1 TGTATCGATACATTCAGTAAA
*
1637311 TGTATCAATACA
1 TGTATCGATACA
1637323 GTGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 3 0.10
21 14 0.47
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCAGTAAA
Found at i:1638464 original size:474 final size:475
Alignment explanation
Indices: 1637371--1644301 Score: 8107
Period size: 474 Copynumber: 14.6 Consensus size: 475
1637361 ATACATTCAG
* * * * ** *
1637371 TAAATG-TATTGATGATTTTCTTTTGCATGAAAATATTTTTTTTGCTCTATTTTACATAGTATTA
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCA
** * * ** ** *
1637435 TTGATCATTCCACAAATAAGACAAATATCAATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
66 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
* * *
1637500 GATCCAAAAACACATTCCCTTCATCAGGATACATGATATTGATGCTTTGGTGTCG-AAGGAAAGC
131 GATCCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * **
1637564 -TTCTTTTCCACCGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATTGTC
195 TTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * * * *
1637628 ATACTATTCCCCATT-TTTTTATGATTTGGCAACTTAAACATAGTCTTCTCAATAGAATACACCA
260 ATACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACACGA
* ** * *
1637692 TATTGATGCTTTGGTTTCGCAAGAAATTCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCAT
325 TATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* *
1637757 GCCTCAAATGAGCAAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATA
390 GCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATA
*
1637822 CACACATTCTCCTCATTAAGA
455 AACACATTCTCCTCATTAAGA
1637843 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CATATTTTCCTTAAAATC
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTC-TATTTTCCTTAAAATC
* *
1637907 AAAGTTAATCCTTTAAATAAGACAAGCATCGATTCT-AGTAACAATCTCCATTCTTTTCAAGATT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATT
* * * * * * * *
1637971 GGGAACAAAAAAGATATTCCACTCATTAGGATACATGACATTGATCCTTTGTTGTTGCAAGAAAA
129 GGGATCCAAAAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
** * * *
1638036 GCTTTTTTTTTTATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
193 GCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
1638101 TCATACTATT-CCCATT-TTTTCTAAGATTAGGCAACTTAAACATAGTCTTCTGC-TTTGAATAC
258 TCATACTATTCCCCATTCTTTTC-AAGATTAGGCAACTTAAACATAGTCTTCT-CAATAGGATAC
* * * * * * * * * * *
1638163 ACCATATTGGTACTTTAGTTTTGCAAGAAAAGCTTTTTTCGCATCGATTTTTATAATGTTTATGT
321 ACGATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * *
1638228 TCATGCCTTAAATGAGCGAAA-TTGGATTCTGGTATTGATCTTCATTCATTTTGTGATTAGGCAC
386 TCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAC
* * * *
1638292 TGTAAACACATTCTTCTCACTAGGA
451 TATAAACACATTCTCCTCATTAAGA
* * * * * ** *
1638317 TAAAAGATATTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTACTCAGTATTA
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCA
* * ** *
1638382 TTA-TTCATCCCATAAATAAGACAAATATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTA
66 -AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
* * * *
1638446 GGATCCAAAAACATATTCCCTTCATCAGGATACATGATATTGATGCTTTGGTGTCG-AAGGAAAG
130 GGATCCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* *
1638510 C-TTTTTTTCCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGT
194 CTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * * *
1638574 CATACTATTCCCCATTTTTTTTCATGATTTGGCAACTTAAACATAGTCTTCTCAAGAGAATACAC
259 CATACTATTCCCCA-TTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACAC
* * ** *
1638639 CATATTGGTGCTTTGGTTTTGCAAGAAATTCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTC
323 GATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * ** * *
1638704 ATGCCTCAAATCAGCCAAATGTGGATTCTAGTATTGATCTTCATTTATTTTGTGGTTAGGCACTA
388 GTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTA
* * *
1638769 TAAACACATTCTCCACAATAGGA
453 TAAACACATTCTCCTCATTAAGA
* * * ***
1638792 TAAATGATATTGATGATTTTCTTTTGTATGAAAATATTTTCTTTGCTCTATTTTACTTAGTGTCA
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCA
* *
1638857 TAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
66 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
* * * * * ** *
1638922 GATCCAAAAACACATTCTGTTCCTTAGGATACAAGACATTGATGGTTTGCTGTCATAAGAAATGC
131 GATCCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* ** * *
1638987 TTTTCTTTT-CACCATTTTTGATAGAATCAAAGTTCATCTCTTTAATAAGACGAACATGAATACT
195 TTTT-TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * ** *
1639051 CGTAGTATTCCCCAATCTTTTCAAGATTAGGC-ACTTTAAATTTAGTCTTCTCATTAGGATACAC
259 CATACTATTCCCCATTCTTTTCAAGATTAGGCAAC-TTAAACATAGTCTTCTCAATAGGATACAC
* ** * * *
1639115 GATATTAGTGCTTTAGCCTT-GCATGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTT
323 GATATTGGTGCTTT-GGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * *
1639179 CGTGCCTCAAATGAGCCAAACATGGATTCTAATTTTGATCATCATTCATTTTGTGATTAGGCACA
387 CGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACT
*
1639244 ATAAAAACATTCTCCTCATTAAGA
452 ATAAACACATTCTCCTCATTAAGA
*
1639268 TTAATGATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTGC-CTTATTTTCCTTAAAAT
1 TAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCTC-TATTTTCCTTAAAAT
* *
1639331 CAAAGTTCATCCCTTAAATAAGAGAAGCATCGATTCT-AGTAACAATCTCCATTCATTTCAAGAT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGAT
* * **
1639395 TGGGAACCAATAACACATTATATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AA
128 TGGGATCCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * *
1639459 AGC-TTTTTTTCCACCATTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAGCATGAATA
192 AGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * *
1639523 ATCATACTATTCCCCATT-TTTTCAAGATTAGGCAACTTAAACAAAGTCTTCTC-AT----TAGA
257 CTCATACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACA
* * * * * *
1639582 CTATATTGGTGCTTTGGGTTCGCAA-CAAAGACTTTTTTCGCACCAATTTTTTTAAAGTCTGAGT
322 CGATATTGGTGCTTTGGTTTCGCAAGAAAAG-CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
* * *
1639646 TCATGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTTATTTTGTGATTAGGCAC
386 TCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAC
* * *
1639711 TATAAACATATTCTACTGATTAAGA
451 TATAAACACATTCTCCTCATTAAGA
* * * * * ** ** *
1639736 TAAACGATATTGATAATTTTCTTTTGCGTGGAAGTCTTTTCTTTGCTCTATTTAACTTAGTATTA
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCA
** * * * * *
1639801 TAA-TTTTTCCCATAAATAGGGCAAGCATCAATTCTCATAACAATCTCCATTTTTTTCAAGATTG
66 -AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
* * * ** * * *
1639865 CGATCCAAAAACGCATTTTCTTCCCTAGGATACATGACATTGATACTTTGGTGTCACAAGAAATG
130 GGATCCAAAAACACA-TTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
1639930 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAATGAATACT
194 CTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
*
1639995 CATACTATTCCCCATTCTTTTCAAGATTAGGC-ACTTTAAACATAGTCTTCTCACTAGGATACAC
259 CATACTATTCCCCATTCTTTTCAAGATTAGGCAAC-TTAAACATAGTCTTCTCAATAGGATACAC
* * * * **
1640059 GATATTGGTGCTTTGGTTTTGCAATAAATGCTTTTCTCCCACCAATTTTTGTAAAGTCTTGGTTC
323 GATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
1640124 GTACCTCAAATGAGCCAATCATGGATTCTAGTATTAATTTTCATTGATTTTGTGATTAGGCACTA
388 GTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTA
* *
1640189 TAAAAACATTCTCCTTATTAAGA
453 TAAACACATTCTCCTCATTAAGA
* *
1640212 TTAATGATATTGATGATTTT-TGTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
1 TAAATGATATTGATGATTTTCT-TTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATC
* *
1640276 AAAGTTAATCCCTTAAATAAGACAAGCATTGATTCT-AGTAACAATCTCCAGTT-TTTTCAAGAT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCA-TTCTTTTCAAGAT
* * * *
1640339 TGGGATCCAAAAACACAATCCATTCATTAGGATACTTGATATTGATGCTTTGGTGTCACAAGAAA
128 TGGGATCCAAAAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* ** * *
1640404 AGGTTTTACTTCCACCGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAATCATGAATA
192 AGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* *
1640469 CTCATACTATTCCCCATTCTTTTCAAGATTAGGC-ACTGTAAACATAGTCTTCTTATTAGGATAC
257 CTCATACTATTCCCCATTCTTTTCAAGATTAGGCAACT-TAAACATAGTCTTCTCAATAGGATAC
* * * *
1640533 ACGATATTAGTGTTTTGGGTTT-GCAAG-AAAGGTTTTTCCCCTACCAATTTTTGTAAAGTCTAG
321 ACGATATTGGTGCTTT-GGTTTCGCAAGAAAAGCTTTTTTCCC-ACCAATTTTTGTAAAGTCTA-
* * * * * * * *
1640596 GGTTCATACCTCAAATGAGCCAATCATCGATTCCAGTATTGATCTTCCTTGATTTTGTGATTAGG
383 AGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * *
1640661 CACCATAAAAACATTCTCCTTATTAAGA
448 CACTATAAACACATTCTCCTCATTAAGA
* * * * *
1640689 TTAATGATATTGATGATTTT-TGTTTGCACGAAAATATTTTCATTGCCCTATTTTCCTTAAAATC
1 TAAATGATATTGATGATTTTCT-TTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATC
* * * *
1640753 AAAGTTAATCCCTTAAATAAGACAAGCATTGATTCT-AGTAACAAACTCCATTCTTTTCAGGATT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATT
* * *
1640817 GGGATCCAAAAACATATTCTCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAC
129 GGGATCCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * * * *
1640882 GCTCTTCTCTCCACCGTTTTTGATAAAATCAAAAGTTTATCTCTTAAATAAGATAAACATGAATA
193 GCTTTTTTTTCCACCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * ** * *
1640947 CTCATACTAGTGCCCATTGTTTTCAAGATTAGGCACCATAAATGTAGCCTTCTC-ATAAAGATAC
257 CTCATACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAAT-AGGATAC
* * * ** *
1641011 ATGATATTGATGGTTTGGTTTCGCAA-AAAAGGCTTTCCTCCCACCAATTTTTGTAAAGTCCAAG
321 ACGATATTGGTGCTTTGGTTTCGCAAGAAAA-GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAG
* * *
1641075 TTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTGTTGATCTTCATTCATTTTGTGATTTGGCA
385 TTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCA
* * *
1641140 CTCTAAACGCATTTTCCTCATTAAGA
450 CTATAAACACATTCTCCTCATTAAGA
* * * * * **
1641166 TTAATGATATTGATGATTTTCTTTTGCAGGGAAATCTTTTCTCTGCCCTATTTTCCTTAAAATTT
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCA
* * * * *
1641231 AAGCTCATCACTTAAATAAGACAAACATCGATTCTCGTAACAATTTCCATTCTTTTCAAGATTGG
66 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
* * * * * *
1641296 GATCCAAAAACACATTATCTTCATTAGGATAAATGGCATTGATGCTTTTGTGACGCAAGAAATG-
131 GATCCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * *
1641360 TTTTTCTTTCCACCGTTTTTGATAGTATCAAAGTTTAT-TCTGAAATAAGACAAACATGAATACT
195 TTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * * *
1641424 TATACTATTCCCCATTCTTTTCAAGATTAGGC-TCTTTAAACATAATTTTCTCATTAGGATACAC
259 CATACTATTCCCCATTCTTTTCAAGATTAGGCAAC-TTAAACATAGTCTTCTCAATAGGATACAC
* * * * * *
1641488 GATATTGATACTTTTGTTTCACAAGAAAGGCTTTATTCCCACCAATTTTTGTAAAGTCTAAG-TC
323 GATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * * ** * * * *
1641552 TATACTTCCAATGTGCCAAAGGTGGATTCTAGTATTGATTTTCATTTATTCTGTAAGTT-GGCAC
388 -GTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGA-TTAGGCAC
* *
1641616 TATAAAAACATTTTCCTCATTAAGA
451 TATAAACACATTCTCCTCATTAAGA
* * *
1641641 T-AAT-ATGTTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CTTATTTTCCATAAAATC
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTC-TATTTTCCTTAAAATC
* * *
1641703 AAAGTTCATCCCTAAAATAAGACAAGTATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
* * * * **
1641768 GGATCCAAAAACACATTCCCTTCCTTAGGATACATGACATTAATGCTTTTGTGTCGAAAGAAGTG
130 GGATCCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
1641833 CTTTTCTTACCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
194 CTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * * * *
1641898 CATTCCATTCCCCATTTTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCAATAGGATATATG
259 CATACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACACG
* * *
1641963 ATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTG
324 ATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * * *
1642028 TACCTCAAATGAGCCAAACGTGGATTCTAGTACTGATTTTCAATCATTTTGTGGTTAGGCACTAT
389 TGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
1642093 CAAA-ACATTCTCCTCATTAAGA
454 -AAACACATTCTCCTCATTAAGA
* * * * * *
1642115 TTAATAATATTTATTA-TTTCTTTTGCATGGAAATCTTTTCTTTGC-CTTATTTT-CTTAAAACC
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTC-TATTTTCCTTAAAATC
* * *
1642177 AAAGTTCATCCCTCAAATAAGACAAGCATCGATTCTCATAACATTCTCCATTATTTTCAAGATTG
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
* * * * * *
1642242 GGATCTAAAAACACATTCTCTTCCTTAGGATACATGACATTAATTCTTTGGTATCGCAAGAAATG
130 GGATCCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
**
1642307 CTTTCATTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
194 CTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * *
1642372 CATACTATTCCCCATTCTTTTCAAGGTTAGGCACCTTAAACATAGTCTTCTCAATAGGATATACG
259 CATACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACACG
*
1642437 ATATTGGTGCTTTGGTTTCGCAAG-AAAGACTTTTTTCCTACCAATTTTTGTAAAGTCTAAGTTC
324 ATATTGGTGCTTTGGTTTCGCAAGAAAAG-CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * * *
1642501 GTGCCTCTAATGAGCCAAACATGGGTTCTAGTATTGATATTCGTTTATTTTGTGGTTAGGCACTA
388 GTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTA
* *
1642566 TAAATACATTCTCCTCATTAGGA
453 TAAACACATTCTCCTCATTAAGA
* * * * * **
1642589 TAAAAGATATTGATTATTTTTTTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTGCTTAGTATC
1 TAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATC
* * * * * *
1642654 ATAGTTCATCCCATAAATAAGACAAGCAT-TACTTTTCAAAACAATCTCTATTCTTTTCAAGATT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGA-TTCTCATAACAATCTCCATTCTTTTCAAGATT
* * *
1642718 GGGATCCAAAAACACATTCTCTTCCTTAGGATACATGACATTGATGCTTTGGAGTCGCAGGAAAT
129 GGGATCCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-
* * * * *
1642783 A-CTATTCTTTCCACCATTTTTGATATAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATA
192 AGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * * *
1642847 CTCATACTATTCCCAATTATTTGCAAGATTAGGC-CCTTTAAACATAGTCTTCTCATTATGATGC
257 CTCATACTATTCCCCATTCTTTTCAAGATTAGGCAAC-TTAAACATAGTCTTCTCAATAGGATAC
** * * *
1642911 ATAATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTCTGTAAAGTCAAAGT
321 ACGATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * *
1642976 TCGTGTCTCAAATAAGCCAAACATGGATTCTAGTTTTTATCTTCATTCATTTTGTGATTAGGCAT
386 TCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAC
*
1643041 TATAAAAACATTCTCCTCATTAAGA
451 TATAAACACATTCTCCTCATTAAGA
* * * *
1643066 TTAATGATATTGATGATTTTCTTTTGTATGAAAATCTTTT-TGTTACTCTATTTTGCTTAAAATC
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT-TTGCTCTATTTTCCTTAAAATC
* *
1643130 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA-TCTTTTCAAGATTA
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
** * * * * * * *
1643194 GTTTTCAAAACCACATTCTGTTCTTTAGGATACATGACAGTGAAGCTTTAGTGTCGCAAGAAAAG
130 GGATCCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * *
1643259 C-TTTTTTTCCACTGTTTTTGATAGAATTAAAGTTTGTCTCCTAAATAAGATAAACATGAATACT
194 CTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * * * * *
1643323 TATACTATTCCTCATTCTTTTCAAGATTAGGC-ACTTTAAACGTAGGCTTCTTATTAGGATACAA
259 CATACTATTCCCCATTCTTTTCAAGATTAGGCAAC-TTAAACATAGTCTTCTCAATAGGATACAC
* * * * * *
1643387 GATATTGATGCTTTGGTTTCGCAAGAAAAACTTTATTCCCATCAATTTTTGTAAAGCCTAAGTTT
323 GATATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * **
1643452 GTACCTCAAATGAGCCAAACATGGGTTCTAGTGTTGATCTTCATTCATTTTATGATTAGATACTA
388 GTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTA
* *
1643517 TAAACACATTCTCCACAGTAAGA
453 TAAACACATTCTCCTCATTAAGA
* * * * * * * * *
1643540 CT-AATGATATTGGTGA-TTTCTTTTACATGGAAATCTTTTCCTTGCCCTATTTTACATGATATC
1 -TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATC
* * * *
1643603 ATAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCA-AGACAATCTCCATTCTTTTCAGGACT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA-ACAATCTCCATTCTTTTCAAGATT
* * * *
1643667 GGGATCCAAAAATACATTCTCTTCATTAGGATAGATGACATTGATGCTTTGGTGTCG-TAGTAAA
129 GGGATCCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* *
1643731 GCTTTTCTTTCCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
193 GCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * * *
1643796 TCATACTATTCCCTATTCTTTTCAAGGTTAGGCACCTTAAACATAGTCTTCTCAATAGGATATAC
258 TCATACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACAC
* *
1643861 GATATTGGTGCTTTGGTTTCGCAAG-AAAGACTTTTTTCCTACCAATTTTTGTAAAGTGTAAGTT
323 GATATTGGTGCTTTGGTTTCGCAAGAAAAG-CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * *
1643925 TGTGCCTCAAATGAGACAAACATGGATTCTAGCAATGAACTTCATTCATTTTGTGATTAGGCACT
387 CGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACT
* * *
1643990 ATAAACACATCCTCCTCATCAGGA
452 ATAAACACATTCTCCTCATTAAGA
* * * *
1644014 TAAATGATATTGATGACATTT-TTTTGCATGAAAATCTTTTCTCTACCCTATTTTCCTTAAAATC
1 TAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATC
* * * *
1644078 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATGTCCATT-TTTTCAACATTT
65 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
* * * ** * *
1644142 GGATCCAAAAACATATT-CTACTCATTAGAATATATGACATTGACACTTTGGGGTCGCAAGGAAA
130 GGATCCAAAAACACATTCCT--TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* *
1644206 GC-TTGTTTTCCACCG-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
193 GCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * **
1644269 TCATACTAATCCCTATTCTTTTCGGGATTAGGC
258 TCATACTATTCCCCATTCTTTTCAAGATTAGGC
1644302 TCCATAGAAG
Statistics
Matches: 5538, Mismatches: 811, Indels: 219
0.84 0.12 0.03
Matches are distributed among these distances:
467 6 0.00
468 277 0.05
469 10 0.00
470 75 0.01
471 31 0.01
472 83 0.01
473 554 0.10
474 1626 0.29
475 816 0.15
476 922 0.17
477 1004 0.18
478 126 0.02
479 8 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (475 bp):
TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCA
AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
GATCCAAAAACACATTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
TACTATTCCCCATTCTTTTCAAGATTAGGCAACTTAAACATAGTCTTCTCAATAGGATACACGAT
ATTGGTGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAAGA
Found at i:1640539 original size:159 final size:159
Alignment explanation
Indices: 1639890--1643888 Score: 632
Period size: 158 Copynumber: 25.2 Consensus size: 159
1639880 TTTTCTTCCC
* * *
1639890 TAGGATACATGACATTGATACTTTGGTGTCACAAGAAATGCTTTTCTTTCCACCATTTTTGATAG
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
* **
1639955 AATCAAAGTTTGTCTCTTAAATAAGACAAAAATGAATACTCA-TACTATTCCCCATTCTTTTCAA
66 AATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTCAA
* * * *
1640019 GATTAGGCACTTTAAACATAGTCTTCTCAC
130 GATTAGGCACTATAAACACAGTCTTCTTAT
* * * ** * * *
1640049 TAGGATACACGATATTGGTGCTTTGGTTTTGCAATAAATGCTTTTC-TCCCACCAATTTTTG-TA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATA
*** * * * * * * * ** *
1640112 -AAGTCTTGGTTCGTAC-CTCAAATGAGCCAATCATGGATTCTAGTATTAATT-TTCATTGATTT
65 GAA-TCAAAGTTAGT-CTCTTAAATAAGACAATCATGAATACTAGTACT-ATTCCCCATT-CTTT
** * * *
1640174 T-GTGATTAGGCACTATAAAAACATTCTCCTTAT
126 TCAAGATTAGGCACTATAAACACAGTCTTCTTAT
* * * ** * * * ***
1640207 TAAGATTA-ATGATATTGATGATTT-TTGTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCT
1 TAGGA-TACATGATATTGATGCTTTGGTG-TCACAAGAAAAGCTTTTCTTT-CCACCATTTTTGA
* * * * * * *
1640269 TAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATTG-ATTCTAGTAAC-AATCTCCAGTT-TT
63 TAGAATCAAAGTTAGTCTCTTAAATAAGACAATCA-TGAATACTAGT-ACTATTCCCCA-TTCTT
* * * *
1640331 TTCAAGATT-GGGATCCAAAAACACAATC--CATTCAT
125 TTCAAGATTAGGCA-CTATAAACACAGTCTTC-TT-AT
* * *
1640366 TAGGATACTTGATATTGATGCTTTGGTGTCACAAGAAAAGGTTTTAC-TTCCACCGTTTTTGATA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTT-CTTTCCACCATTTTTGATA
1640430 GAATCAAAGCTT-GTCTCTTAAATAAGACAATCATGAATACTCA-TACTATTCCCCATTCTTTTC
65 GAATCAAAG-TTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTC
* *
1640493 AAGATTAGGCACTGTAAACATAGTCTTCTTAT
128 AAGATTAGGCACTATAAACACAGTCTTCTTAT
* * ** * **
1640525 TAGGATACACGATATT-AGTGTTTTGG-GTTTGCAAG-AAAGGTTTT-TCCCCTACCAATTTTTG
1 TAGGATACATGATATTGA-TGCTTTGGTG-TCACAAGAAAAGCTTTTCTTTCC-ACC-ATTTTTG
** * * * * * * *
1640586 -TA-AAGTCTAGGGTTCA-TAC-CTCAAATGAGCCAATCATCG-ATTCCAGTATTGA-TCTTCC-
62 ATAGAA-TC-AAAGTT-AGT-CTCTTAAATAAGACAATCAT-GAATACTAGTACT-ATTC-CCCA
* ** * * * *
1640644 TTGATTTT-GTGATTAGGCACCATAAAAACATTCTCCTTAT
120 TT-CTTTTCAAGATTAGGCACTATAAACACAGTCTTCTTAT
* * * * ** * * **
1640684 TAAGATTA-ATGATATTGATGATTTTTGTTTGCAC--GAAAATATTTTCATTGCC-CTATTTTCC
1 TAGGA-TACATGATATTGATG-CTTTGGTGT-CACAAGAAAAGCTTTTC-TTTCCACCATTTTTG
* * * * * * ** *
1640745 TTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATTG-ATTCTAGTAAC-AAACTCCATTCTT
62 ATAGAATCAAAGTTAGTCTCTTAAATAAGACAATCA-TGAATACTAGT-ACTATTCCCCATTCTT
* * * * * * *
1640808 TTCAGGATT-GGGATCCAAAAACATATTC-TCTTCCT
125 TTCAAGATTAGGCA-CTATAAACACAGTCTTCTT-AT
* * * * * * *
1640843 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAACGCTCTTCTCTCCACCGTTTTTGATAA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
* * * * *
1640908 AATCAAAAGTTTA-TCTCTTAAATAAGATAAACATGAATACTCA-TACTAGTGCCCATTGTTTTC
66 AATC-AAAG-TTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTC
* *** * *
1640971 AAGATTAGGCACCATAAATGTAGCCTTCTCAT
128 AAGATTAGGCACTATAAACACAGTCTTCTTAT
* * * * * * *
1641003 AAAGATACATGATATTGATGGTTTGGTTTCGCAA-AAAAGGC-TTTCCTCCCACCAATTTTTG-T
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAA-GCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * * ** **
1641065 A-AAGTCCAAGTTCGTGC-CTCAAATGAGTCAAACATGGATTCTAGTGTTGA-TCTTCATTCATT
64 AGAA-TCAAAGTTAGT-CTCTTAAATAAGACAATCATGAATACTAGTACT-ATTCCCCATTC-TT
** * * * * *
1641127 TT-GTGATTTGGCACTCTAAACGCA-TTTTCCTCAT
125 TTCAAGATTAGGCACTATAAACACAGTCTT-CTTAT
* * ** * ** * * * * * ***
1641161 TAAGATTA-ATGATATTGATGATTTTCTTTTGCAGGGAAATCTTTTCTCTGCC-CTATTTTCCTT
1 TAGGA-TACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT-TTCCACCATTTTTGAT
* ** * * * * * * *
1641224 AAAATTTAAGCTCA-TCACTTAAATAAGACAAACATCG-ATTCTCGTAACAATT-TCCATTCTTT
64 AGAATCAAAG-TTAGTCTCTTAAATAAGACAATCAT-GAATACTAGT-ACTATTCCCCATTCTTT
* * *
1641286 TCAAGATT-GGGATCCAAAAACACA-T-TATCTTCAT
126 TCAAGATTAGGCA-CTATAAACACAGTCT-TCTT-AT
* ** * * * * * *
1641320 TAGGATAAATGGCATTGATGCTTTTGTGACGCAAGAAATGTTTTTCTTTCCACCGTTTTTGATAG
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
* * *
1641385 TATCAAAGTTTA-T-TCTGAAATAAGACAAACATGAATACTTA-TACTATTCCCCATTCTTTTCA
66 AATCAAAG-TTAGTCTCTTAAATAAGACAATCATGAATAC-TAGTACTATTCCCCATTCTTTTCA
* * * * * *
1641447 AGATTAGGCTCTTTAAACATAATTTTCTCAT
129 AGATTAGGCACTATAAACACAGTCTTCTTAT
* * * * * * *
1641478 TAGGATACACGATATTGATACTTTTGTTTCACAAGAAAGGC-TTTATTCCCACCAATTTTTG-TA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATA
* ** ** * *** * * * **
1641541 -AAGTCTAAGTCTA-TACT-TCCAATGTGCCAAAGGTGGATTCTAGTATTGATT-TTCATT-TAT
65 GAA-TCAAAGT-TAGT-CTCTTAAATAAGACAATCATGAATACTAGTACT-ATTCCCCATTCT-T
* * * *
1641601 TCTGTAAG-TT-GGCACTATAAAAACA-TTTTCCTCAT
125 T-T-CAAGATTAGGCACTATAAACACAGTCTT-CTTAT
* * * * ** * ** * * ** **
1641636 TAAGATA-AT-ATGTTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-TTATTTTCCATA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCATTTTTGATA
* * * * * *
1641698 AAATCAAAGTTCA-TCCCTAAAATAAGACAAGT-ATCG-ATTCTCA-TAAC-AATCTCCATTCTT
65 GAATCAAAGTT-AGTCTCTTAAATAAGACAA-TCAT-GAATACT-AGT-ACTATTCCCCATTCTT
* * * * * *
1641758 TTCAAGATTTGG-ATCCAAAAACACATTC-CCTTCCT
125 TTCAAGATTAGGCA-CTATAAACACAGTCTTCTT-AT
* * * ** * *
1641793 TAGGATACATGACATTAATGCTTTTGTGTCGA-AAGAAGTGCTTTTCTTACCACCTTTTTTGATA
1 TAGGATACATGATATTGATGCTTTGGTGTC-ACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * *
1641857 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA-TTCCATTCCCCATTTTTTTCA
65 GAATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTCA
* * *
1641921 AGATTAGGCACCT-TAAACATAGTCTTCTCAA
129 AGATTAGGCA-CTATAAACACAGTCTTCTTAT
* * * * *
1641952 TAGGATATATGATATTGGTGCTTTGGTTTCGCAAG-AAAGGTTTT-TTTCCCACCAATTTTTG-T
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACC-ATTTTTGAT
* * * * * * * * * ** *
1642014 A-AAGTCTAAGTTTGTAC-CTCAAATGAGCCAAACGTGGATTCTAGTACTGATT-TTCAATCATT
64 AGAA-TCAAAGTTAGT-CTCTTAAATAAGACAATCATGAATACTAGTACT-ATTCCCCATTC-TT
** * * * *
1642076 TT-GTGGTTAGGCACTATCAAA-ACATTCTCCTCAT
125 TTCAAGATTAGGCACTAT-AAACACAGTCTTCTTAT
* * * ** * * ** * * * **
1642110 TAAGATTA-ATAATATTTATTATTT-CTTTTGCATGGAAATCTTTTCTTTGCC-TTATTTTCT--
1 TAGGA-TACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCATTTT-TGA
* * * * * * * *
1642170 TAAAACCAAAGTTCA-TCCCTCAAATAAGACAAGCATCG-ATTCTCA-TAAC-ATTCTCCATTAT
63 TAGAATCAAAGTT-AGTCTCTTAAATAAGACAATCAT-GAATACT-AGT-ACTATTCCCCATTCT
* * * *
1642231 TTTCAAGATT-GGGATCTAAAAACACATTC-TCTTCCT
124 TTTCAAGATTAGGCA-CTATAAACACAGTCTTCTT-AT
* * * * * * *
1642267 TAGGATACATGACATTAATTCTTTGGTATCGCAAGAAATGC-TTTCATTTCCACCGTTTTTGATA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC-TTTCCACCATTTTTGATA
* *
1642331 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA-TACTATTCCCCATTCTTTTCA
65 GAATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTCA
* * * *
1642395 AGGTTAGGCACCT-TAAACATAGTCTTCTCAA
129 AGATTAGGCA-CTATAAACACAGTCTTCTTAT
* * * * *
1642426 TAGGATATACGATATTGGTGCTTTGGTTTCGCAAG-AAAGAC-TTT-TTTCCTACCAATTTTTG-
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAG-CTTTTCTTTCC-ACC-ATTTTTGA
* * * * * ** * * * ** *
1642487 TA-AAGTCTAAGTTCGTGC-CTCT-AATGAGCCAAACATGGGTTCTAGTATTGATAT-TCGTTTA
63 TAGAA-TCAAAGTTAGT-CTCT-TAAATAAGACAATCATGAATACTAGTACT-AT-TCCCCATTC
** * * * * *
1642548 TTTT-GTGGTTAGGCACTATAAATACATTCTCCTCAT
123 TTTTCAAGATTAGGCACTATAAACACAGTCTTCTTAT
* * ** ** * ** * * * * * * *
1642584 TAGGATAAAAGATATTGATTATTTTTTTTTTGCATGGAAATCTTTTCTTTGCTCTA-TTTTGCTT
1 TAGGATACATGATATTGA-TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTG-AT
* * * * * * * ** ** * * *
1642648 AGTATCATAGTTCA-TCCCATAAATAAGACAAGCATTACTTTTCAAAAC-AATCTCTATTCTTTT
64 AGAATCAAAGTT-AGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTT
* * * * *
1642711 CAAGATT-GGGATCCAAAAACACATTC-TCTTCCT
127 CAAGATTAGGCA-CTATAAACACAGTCTTCTT-AT
* * * * *
1642744 TAGGATACATGACATTGATGCTTTGGAGTCGCAGGAAATA-CTATTCTTTCCACCATTTTTGATA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAA-AGCTTTTCTTTCCACCATTTTTGATA
* * * * * * *
1642808 TAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCA-TACTATTCCCAATTATTTGCA
65 GAATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTCA
* * * *
1642872 AGATTAGGCCCTTTAAACATAGTCTTCTCAT
129 AGATTAGGCACTATAAACACAGTCTTCTTAT
* * * * * * * * *
1642903 TATGATGCATAATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTCTG-TA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATA
* * * * * * * * * **
1642966 -AAGTCAAAGTTCGTGTCTCAAATAAGCCAAACATGGATTCTAGT-TTTTATCTTCATTCATTTT
65 GAA-TCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACTAGTACTAT-TCCCCATTC-TTTT
** * * * * *
1643029 -GTGATTAGGCATTATAAAAACATTCTCCTCAT
127 CAAGATTAGGCACTATAAACACAGTCTTCTTAT
* * ** * *** * * * * * *
1643061 TAAGATTA-ATGATATTGATGATTTTCTTTTGTATGAAAATCTTTT-TGTTACTCTA-TTTTGCT
1 TAGGA-TACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT-TTCCACCATTTTTG-A
* * * * * *
1643123 TAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCG-ATTCTCA-TAAC-AGTCTCCA-TCT
63 TAGAATCAAAGTT-AGTCTCTTAAATAAGACAATCAT-GAATACT-AGT-ACTATTCCCCATTCT
*** *
1643183 TTTCAAGATTA-GTTTTCA-AAACCACATTCTGT-TCT-T
124 TTTCAAGATTAGGCACT-ATAAA-CACAGTCT-TCT-TAT
* * * * * **
1643219 TAGGATACATGACAGTGAAGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCCACTGTTTTTGATAG
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
* * * * * *
1643283 AATTAAAGTTTGTCTCCTAAATAAGATAAACATGAATACTTA-TACTATTCCTCATTCTTTTCAA
66 AATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATAC-TAGTACTATTCCCCATTCTTTTCAA
* ** *
1643347 GATTAGGCACTTTAAACGTAGGCTTCTTAT
130 GATTAGGCACTATAAACACAGTCTTCTTAT
* * * * * * *
1643377 TAGGATACAAGATATTGATGCTTTGGTTTCGCAAGAAAAAC-TTTATTCCCATCAATTTTTG-TA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATA
* * * * * * * ** * ** **
1643440 -AAGCCTAAGTTTGTAC-CTCAAATGAGCCAAACATGGGTTCTAGTGTTGA-TCTTCATTCATTT
65 GAA-TCAAAGTTAGT-CTCTTAAATAAGACAATCATGAATACTAGTACT-ATTCCCCATTC-TTT
* ** * * ** *
1643502 T-ATGATTAGATACTATAAACACATTCTCCACAG
126 TCAAGATTAGGCACTATAAACACAGTCTTCTTAT
* * * * * * * * * * * **
1643535 TAAGACTA-ATGATATTGGTGATTT-CTTTTACATGGAAATCTTTTCCTTGCC-CTATTTTACAT
1 TAGGA-TACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTT-CTTTCCACCATTTTTGAT
* * * * *
1643597 -GATATCATAGTTCA-TC-CTTTAAATAAGACAAGCATCG-ATTCTCAAG-AC-AATCTCCATTC
64 AGA-ATCAAAGTT-AGTCTC-TTAAATAAGACAATCAT-GAATACT--AGTACTATTCCCCATTC
* * * * * * *
1643656 TTTTCAGGACT-GGGATCCAAAAATACATTC-TCTTCAT
123 TTTTCAAGATTAGGCA-CTATAAACACAGTCTTCTT-AT
* * ** * * *
1643693 TAGGATAGATGACATTGATGCTTTGGTGTC-GTAGTAAAGCTTTTCTTTCCACCGTTTTTCATAG
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
* * *
1643757 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA-TACTATTCCCTATTCTTTTCAA
66 AATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACT-AGTACTATTCCCCATTCTTTTCAA
* * * *
1643821 GGTTAGGCACCT-TAAACATAGTCTTCTCAA
130 GATTAGGCA-CTATAAACACAGTCTTCTTAT
* * * * *
1643851 TAGGATATACGATATTGGTGCTTTGGTTTCGCAAGAAA
1 TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAA
1643889 GACTTTTTTC
Statistics
Matches: 2726, Mismatches: 833, Indels: 562
0.66 0.20 0.14
Matches are distributed among these distances:
155 3 0.00
156 58 0.02
157 312 0.11
158 1061 0.39
159 1024 0.38
160 244 0.09
161 21 0.01
162 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (159 bp):
TAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
AATCAAAGTTAGTCTCTTAAATAAGACAATCATGAATACTAGTACTATTCCCCATTCTTTTCAAG
ATTAGGCACTATAAACACAGTCTTCTTAT
Found at i:1646031 original size:159 final size:158
Alignment explanation
Indices: 1644391--1646992 Score: 659
Period size: 159 Copynumber: 16.4 Consensus size: 158
1644381 CACTCAATAC
* * * * ** * * *
1644391 GATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCATTTACTTCTA-CTATTTTTGATAGAA
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGC-TTTTTTTCCACCAATTTTTGATAAAA
* * * *
1644455 TCAAAGCTTGTCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCATTCTTTTTAGGA
65 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT-AGTACTAATCTCCATTCTTTTGAAGA
* ** ** * *
1644519 TTAGGCACCATAAATGCA-AGCTTCTCATAAA
129 TTAGGCA--TTAAAAACATTTCTTCTCATTAG
* * * * * *
1644550 GATACACGATCTTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTG-TAAAGT
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAAAT
* ** * * * * * * ** * * *
1644614 CTAAGTCCGTGC-CTCAATTAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTG-TGA
66 CAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTAGTACTAATCTCCATTC-TTTTGAAGA
* * *
1644677 TTAGGCACAATAAAAACA-TTCTCCTCATTAA
129 TTAGG--CATTAAAAACATTTCTTCTCATTAG
** * * ** * * * * * * **
1644708 GATTA-ATTATATTGATGATTTTCTTTTGCATTGAAA-TCTTTTCTTTGC-CCTATTTTTCTTAA
1 GA-TACACGATATTGGTGCTTTGGTCTCGCA-AGAAAGGCTTTT-TTTCCACCAATTTTTGATAA
** * * ** * *
1644770 AATCAAAGTTCATC-CTTTAAATAAGACAAGCATCG-ATTCTCACAAC-AACCTCCATTCTTTTC
63 AATCAAAGTTTGTCTC-TTAAATAAGACAAACAT-GAATACT-AGTACTAATCTCCATTCTTTTG
* * *
1644832 AAGATT-GGGATCCAAAAACACATTTCCT-TCATTAG
125 AAGATTAGGCAT--TAAAA-ACATTTCTTCTCATTAG
* * * * * * * * * *
1644867 GGTACAAGACT-TTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCAATC-GTTTTCGATAGA
1 GATACACGA-TATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTT-TTTCCACCAATTTTTGATAAA
* * * * *
1644930 ATGAAAGTTTGTCTCTTAAATCAGACAAACATGAATACTCA-TACTATTCCCCATTCTTTTCAAG
64 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT-AGTACTAATCTCCATTCTTTTGAAG
** ** * *
1644994 ATTAGGCACTT-TGAATGTTGTCTTCTCGTTAA
128 ATTAGGCA-TTAAAAACATT-TCTTCTCATTAG
* * * * * * **
1645026 GATGCCCGAAATTGGTGCTTTGGTTTTGCAAGAAAGG-TTTTTTCCCACCAATTTTTG-TAAGGT
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAAAT
* * * * * * * ** * * *
1645089 CAAAATCTGTGTCTCAAATGAA-CCAAACGTGGATACTAGTTTTGATCTACATTCATTTTG-TGA
66 CAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTAGTACTAATCTCCATTC-TTTTGAAGA
* *
1645152 TTAGGCACTATAAAAATATTCTCTTCT--TTAA
129 TTAGGCA-T-TAAAAACATT-TCTTCTCATTAG
* * * ** * * * * * * **
1645183 GATTA-ATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTGTTTAC-CCTATTTTTCTTAA
1 GA-TACACGATATTGGTGCTTTGGTCTCGCA-AGAAAGGCTTTT-TTTCCACCAATTTTTGATAA
** * * * *
1645245 AAT-AAAGTTCATCCCTTAAATAAGACAAGCATTGATTCAC-A-TAAC-AATCTCCATTCTTTTC
63 AATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAAT-ACTAGT-ACTAATCTCCATTCTTTTG
* * * *
1645306 ATGATT-GGGATCCAAAAACACATTT-TAT-TCATTAA
125 AAGATTAGGCAT--TAAAA-ACATTTCT-TCTCATTAG
* * * * * * * ** *
1645341 GATACATGATAGTGATGCTTT-GTGTCACAAGAAAAGCTTTTTCTCCA-CTGTTTTTGATAGAAT
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAAAT
* * * *
1645404 CAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTTA-TACTATTC-CTCTTTTTTTTCG-AG
66 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-TAGTACTAATCTC-CATTCTTTT-GAAG
* *
1645466 ATTAGGCACTT-TAAACATAGTT-TTCTCACTAG
128 ATTAGGCA-TTAAAAACAT--TTCTTCTCATTAG
* * * * ** ***
1645498 GATACACGATATTGGTGCTTTCGTTTCGCAATAAAGGCTTTTTTCCCAAGAAATTTTTG-TACGG
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCC-ACCAATTTTTGATAAAA
* * * * ** ** * * * *
1645562 TCAAAATTCATG-C-CTCAAATAAGCCAAACGTGGGTACTAGTTTTTATCTTCTTTCATTTTG-T
65 TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATACTAGTACTAATCTCCATTC-TTTTGAA
* * *
1645624 TATTAGGCATTGTAAAAACA-TTCTCCTCATTAA
127 GATTAGGCA-T-TAAAAACATTTCTTCTCATTAG
* * * ** * * * * * * * * *
1645657 GAGTA-ATGATATTGATGATTTTCTTTTGCATTGAAA-TCTTTTCTATGC-CCTA-TTTCGCTTA
1 GA-TACACGATATTGGTGCTTTGGTCTCGCA-AGAAAGGCTTTT-TTTCCACCAATTTTTG-ATA
* *
1645718 AAATCAAAG-TTGAT-TCCTTAAATAAGACAATCATCG-ATTCTCA-TAAC-AATCTCCATTCTT
62 AAATCAAAGTTTG-TCT-CTTAAATAAGACAAACAT-GAATACT-AGT-ACTAATCTCCATTCTT
* * * *
1645778 TTTAAGATT-GGGATCCAAAAACACATTT-TTTTCATTAG
122 TTGAAGATTAGGCAT--TAAAA-ACATTTCTTCTCATTAG
* * * * * * * * * * * *
1645816 GATGCATGACAGTGATGCTTTGGTGTCACCAGAAAAGCTTTTTTTTCCATC-GTTTTTGATAGAA
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGC-TTTTTTTCCACCAATTTTTGATAAAA
* * * * *
1645880 TTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGTACTATTCCCCATTCTTTTGAGGAT
65 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTAGTACTAATCTCCATTCTTTTGAAGAT
**
1645945 TAGGCATTTTAAACATTGTCTTCTCATTAG
130 TAGGCATTAAAAACATT-TCTTCTCATTAG
* *
1645975 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG-TAAAGT
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAAAT
* * * * * * * ** * *
1646039 CAAAATTCGTGC-CTCAAATGAGCCAAACATGGATTCTAGTTTTAATCTTCATTCATTTTG-TGA
66 CAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTAGTACTAATCTCCATTC-TTTTGAAGA
** *
1646102 TTAGGCACAACAAAAACATTT-TCCTCATT-G
129 TTAGG--CATTAAAAACATTTCTTCTCATTAG
* * ** * * * ** * * ***
1646132 AGATTA-ATGATATTGGTGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAA
1 -GA-TACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTT-TTTCCACCAATTTTTGATAA
* * * * * * *
1646195 AATCAAAG-TTGATCCCTTAAATAAGACAAGCATCG-ATTCTCGTAAC-AATCTCCACTGTTTTC
63 AATCAAAGTTTG-TCTCTTAAATAAGACAAACAT-GAATACTAGT-ACTAATCTCCATTCTTTTG
* * * *
1646257 AAGATT-GGGATCCAAAAACACATACTAT-TCATTAG
125 AAGATTAGGCAT-TAAAAACA-TTTCT-TCTCATTAG
* * * * * * * *
1646292 GATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACC-GTTTTTGATAGAAT
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAAAT
* ** * *
1646356 TAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTA-TACTTTTCCCCATTCTTTTCAAGAT
66 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-TAGTACTAATCTCCATTCTTTTGAAGAT
* * ** **
1646420 TAGGCACTT-TAAACATAGTCTTCGAACCA-
130 TAGGCA-TTAAAAACAT-TTCTTCTCATTAG
* * *
1646449 GAGTACACGAAATTGGTGCTTTGGAT-TCGCAACAAAGGCTTTTTTCCCACCAA-TTTTG-TAAA
1 GA-TACACGATATTGGTGCTTTGG-TCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAA
* * * * * * * * * * *
1646511 ATCTAAGTTCGGGC-CTCAAATGAGCCAAACGTGGACT-CTAGTATTGATCTTCATTCATTTTG-
64 ATCAAAGTT-TGTCTCTTAAATAAGACAAACAT-GAATACTAGTACTAATCTCCATTC-TTTTGA
* ** ** * *
1646573 TGATTAGGCGCTATGAACATATTCTCCTCATTAA
126 AGATTAGGCATTAAAAACAT-TTCTTCTCATTAG
* * * ** * * * * * ***
1646607 GACTA-ATGATATTGATGATTTTCTTTCGCATTGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAA
1 GA-TACACGATATTGGTGCTTTGGTCTCGCA-AGAAAGGCTTTT-TTTCCACCAATTTTTGATAA
* ** * * * * * *
1646669 AATCAAAATTCATCTCCTAAATAAGACAAGCATCG-ATTCTAGCAAC-AATCTCTATTCTTTTCA
63 AATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTAG-TACTAATCTCCATTCTTTTGA
* * * *
1646732 AGATT-GGGATCCAAAAACACATTCTTTTCATTAG
126 AGATTAGGCAT-TAAAAACA-TTTCTTCTCATTAG
** * * * * *
1646766 GATACACGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACC-ATTTTTGAGAGAA
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTT-TTTCCACCAATTTTTGATAAAA
* * * * * * * *
1646830 TCAATGTTTGTCTTTTAAATAAGACAAACTTGAATACTCGTGCTATTCCCCATTCTTTTGAGGAT
65 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTAGTACTAATCTCCATTCTTTTGAAGAT
**
1646895 TAGGCATTTCAAACATTGTCTTCTCATTAG
130 TAGGCATTAAAAACATT-TCTTCTCATTAG
* * *
1646925 GACACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGC-TTTCTTCTCACCAATTTTTG-TAAAG
1 GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTC-CACCAATTTTTGATAAAA
1646988 TCAAA
65 TCAAA
1646993 ATTCATGCCT
Statistics
Matches: 1728, Mismatches: 552, Indels: 327
0.66 0.21 0.13
Matches are distributed among these distances:
155 6 0.00
156 41 0.02
157 282 0.16
158 540 0.31
159 777 0.45
160 74 0.04
161 8 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
GATACACGATATTGGTGCTTTGGTCTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTGATAAAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTAGTACTAATCTCCATTCTTTTGAAGATT
AGGCATTAAAAACATTTCTTCTCATTAG
Found at i:1646866 original size:475 final size:475
Alignment explanation
Indices: 1644335--1652270 Score: 9481
Period size: 476 Copynumber: 16.8 Consensus size: 475
1644325 TCAATTCCAA
* * * * * * * *
1644335 CAACAATCTCCATTATTTTCAAGATTACGAAACCAAAAACACATTCCACTCAATACGATACATGA
1 CAACAATCTCCATTCTTTTCAAGATT-GGGATCCAAAAACACATTCTATTCATTAGGATACATGA
* ** * ** *
1644400 TATTGATGCTTTGGTGTCGCAAGAAAAGCATTTACTTCTACTATTTTTGATAGAATCAAAGCTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * **
1644465 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT
129 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT
* * * *
1644530 AAATGCA-AG-CTTCTCA-TAAAGATACACGATCTTGATGCTTTGGTTTTGCAAGAAAGGCTTTT
194 AAA--CATAGTCTTCTCACT-AGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTT
* * * *
1644592 TTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAATTAAGCCAAACGTGGATTCTAGTTTT
256 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* *
1644657 GATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATTATATTG
321 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* *
1644722 ATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCTT
386 ATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
*
1644787 TAAATAAGACAAGCATCGATTCTCA
451 TAAATAAGACAAGCATCGATTCTCG
* * * *
1644812 CAACAACCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATT-TCCTTCATTAGGGTACAAGA
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCT-ATTCATTAGGATACATGA
* * * * * *
1644876 CTTTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCAATCGTTTTCGATAGAATGAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTG
*
1644941 TCTCTTAAATCAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT
129 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT
* ** * ** * * * * * * *
1645006 GAATGTTGTCTTCTCGTTAAGATGCCCGAAATTGGTGCTTTGGTTTTGCAAGAAAGG-TTTTTTC
194 AAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTC
* * * * *
1645070 CCACCAATTTTTGTAAGGTCAAA-ATCTGTGTCTCAAATGAACCAAACGTGGATACTAGTTTTGA
259 CCACCAATTTTTGTAAAGTCAAAGTTC-GTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* * * *
1645134 TCTACATTCATTTTGTGATTAGGCACTATAAAAATATTCTCTTCTTTAAGATTAATGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
* * * *
1645199 GATTTTCTTTTGCATGGAAATCTTTTGTTTACCCTATTTTTCTTAAAAT-AAAGTTCATCCCTTA
388 GATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * *
1645263 AATAAGACAAGCATTGATTCACA
453 AATAAGACAAGCATCGATTCTCG
* * * * *
1645286 TAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTTTATTCATTAAGATACATGAT
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* * * *
1645351 AGTGATGCTTT-GTGTCACAAGAAAAGCTTTTTCTCCACTGTTTTTGATAGAATCAAAGTTTGTC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * * *
1645415 TCTTAAATTAGACAAACATGAATACTTATACTATTCCTCTTTTTTTTCGAGATTAGGCACTTTAA
131 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
* * * * *
1645480 ACATAGTTTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAATAAAGGCTTTTTTCCC
196 ACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCCC
** ** * * * * * *
1645545 AAGAAATTTTTGTACGGTCAAAATTCATGCCTCAAATAAGCCAAACGTGGGTACTAGTTTTTATC
261 -ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATC
* * * * *
1645610 TTCTTTCATTTTGTTATTAGGCATTGTAAAAACATTCTCCTCATTAAGAGTAATGATATTGATGA
325 TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGA
* * *
1645675 TTTTCTTTTGCATTGAAATCTTTTCTATGCCCTA-TTTCGCTTAAAATCAAAGTTGATTCCTTAA
390 TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTC-CTTAAAATCAAAGTTCATCCCTTAA
* *
1645739 ATAAGACAATCATCGATTCTCA
454 ATAAGACAAGCATCGATTCTCG
* * * * *
1645761 TAACAATCTCCATTCTTTTTAAGATTGGGATCCAAAAACACATTTTTTTCATTAGGATGCATGAC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* * * * *
1645826 AGTGATGCTTTGGTGTCACCAGAAAAGCTTTTTTTTCCATCGTTTTTGATAGAATTAAAGTTTGT
66 ATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
1645891 CTCTTAAATAAGACAAACATGAATACTCGTACTATTCCCCATTCTTTTGAGGATTAGGCATTTTA
130 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTA
* * *
1645956 AACATTGTCTTCTCATTAGGATACACGATATTGGTGCTTTGG-TCTCGCAAGAAAGGCTTTTTTC
195 AACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGAT-TCGCAAGAAAGGCTTTTTTC
* * *
1646020 CCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTTTTAAT
259 CCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGAT
* * * * *
1646085 CTTCATTCATTTTGTGATTAGGCACAACAAAAACATTTTCCTCATTGAGATTAATGATATTGGTG
324 CTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATG
*
1646150 ATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTGATCCCTTA
389 ATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
1646214 AATAAGACAAGCATCGATTCTCG
453 AATAAGACAAGCATCGATTCTCG
* * * *
1646237 TAACAATCTCCACTGTTTTCAAGATTGGGATCCAAAAACACATACTATTCATTAGGATACATGAC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* *
1646302 AATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATTAAAGTTTGTC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* *
1646367 TCTTAAATAAGACAAACATGAATACTTATACTTTTCCCCATTCTTTTCAAGATTAGGCACTTTAA
131 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
** * * * *
1646432 ACATAGTCTTCGAACCA-GAGTACACGAAATTGGTGCTTTGGATTCGCAACAAAGGCTTTTTTCC
196 ACATAGTCTTCTCACTAGGA-TACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCC
* * * * *
1646496 CACCAA-TTTTGTAAAATCTAAGTTCGGGCCTCAAATGAGCCAAACGTGGACTCTAGTATTGATC
260 CACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATC
* * * * *
1646560 TTCATTCATTTTGTGATTAGGCGCTATGAACATATTCTCCTCATTAAGACTAATGATATTGATGA
325 TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGA
* *
1646625 TTTTCTTTCGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCTCC-TAA
390 TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAA
*
1646689 ATAAGACAAGCATCGATTCTAG
454 ATAAGACAAGCATCGATTCTCG
* * * *
1646711 CAACAATCTCTATTCTTTTCAAGATTGGGATCCAAAAACACATTCTTTTCATTAGGATACACGGC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* * * *
1646776 ATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCATTTTTGAGAGAATCAATGTTTGT
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * *
1646841 CTTTTAAATAAGACAAACTTGAATACTCGTGCTATTCCCCATTCTTTTGAGGATTAGGCA-TTTC
130 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT-
* * * * *
1646905 AAACATTGTCTTCTCATTAGGACACACGATATTGGTGCTTTGG-TCTCGCAAGAAAGGCTTTCTT
194 AAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGAT-TCGCAAGAAAGGCTTTTTT
* * * * * *
1646969 CTCACCAATTTTTGTAAAGTCAAAATTCATGCCTCAAATGAGCCAAACATGGATTATAGTTTTAA
258 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* * * *
1647034 TCTTCATTCATTTTGTGATTAGGCACCACAAAAACATTCTCCTCATTGAGATTAATGATATTGGT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
1647099 GATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
388 GATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * *
1647163 AAATAAGATAAGCATTGATTCACA
452 AAATAAGACAAGCATCGATTCTCG
* * *
1647187 TAACAATCTCCA-------C-----T--G--------------T-T-TTCATTAGGACACATGAT
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* *
1647222 ATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATTAAAGTTTGTC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * *
1647287 TCTTAAATAAGATAAACATGAATACTTATACTTTTCCCCATTCTTTTCAAGATTAGGCGCTTTAA
131 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
** * * * *
1647352 ACATAGTCTTCTCACTATAATATACGATATTGGTGCTTCGGTTTCGCAAGAAAGGCTTTTTTCCC
196 ACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCCC
** * * * * *
1647417 AAGAAATTTTTGTAAAGTCAAAATTCATGCCTCAAACGAGCCAAACGTGGATTTTAGTTTTCATC
261 -ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATC
* *
1647482 TTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTTATTAAGATTAATGATATTGATGA
325 TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGA
** *
1647547 TTTTCTTTTGTGTTGAAATCTTTT-TCTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAA
390 TTTTCTTTTGCATTGAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
*
1647611 ATAAGAAAAGCATCGATTCTCG
454 ATAAGACAAGCATCGATTCTCG
* * * * * *
1647633 CAATAATCCCCATTGC-TTTCAAGATTGGGATCAAAAAAACACATTCTCTTCATTAGGATGCAAG
1 CAACAATCTCCATT-CTTTTCAAGATTGGGATC-CAAAAACACATTCTATTCATTAGGATACATG
* * *
1647697 ACAATGATGCTTTGGTGTCGCAAGAAATGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
64 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTT
* * *
1647762 GTCTCTTAAATCAAG-CCAACATGAATACTTATACTATTCCCCATTCTTTTGAAGATTAGGCACT
128 GTCTCTTAAAT-AAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACT
* * * * * * *
1647826 TTAAGCATAGTCTTCTCACTAGGATACACAATATTGGTGCTTGGGAATCACAAGAAAGGCTCTTT
192 TTAAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTT
* *** * * *
1647891 TCCCACCAATTTTTGTAAAGTCTAAGTTCGCATCTC-AATGAGCCAAACGCGGAGTCTAGTGTTG
257 TCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTG
* * * *
1647955 ATCTTCATTCATTTTGTGATTAGGTACAATAGAAACATTCAT-CTCCTTAAGATTAATGATATTG
322 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC-TCCTCATTAAGATTAATGATATTG
* *
1648019 ATGATTTTCTTTTAG-ATTGAAATCTTTTCTTCGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
386 ATGATTTTCTTTT-GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * *
1648083 CTAAATAAGACAAACATCAATTCTCG
450 TTAAATAAGACAAGCATCGATTCTCG
* ** *
1648109 CAACAATCTCTATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGGC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* * *
1648174 ATTGATGCTTTGGTGTCGCAAGAAATGCTTTTTTTTCCACCGTTTTCGATAGAATCAAAGTTTGC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
1648239 CTCTTAAATAAGACAAATATGAATACTCATACTATTCCCAATTCTTTTTAAGTTTAGGCATTTTA
130 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTA
* * * * *
1648304 AGCATTGTCTTCTCATTAGGATACACGATATTGATGCTTT-CATTTCACAAGAAAGGCTTTCTTT
195 AACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGA-TTCGCAAGAAAGGCTTT-TTT
* * * * * * *
1648368 -CCACCAATATTTGTAAAGTCAAAGTTCGCGCCTTAAATAAGCCAAACGTAGATTTTACTTTTGA
258 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* * * * * *
1648432 TGTTTATTCATTTTGTGATTAGGCAGTATAAAAACATTCTCCTCACTAAGATTAATGATGTTGGT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
* * * * *
1648497 GATTTT-TTTCGCATGGAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAACGATCATCCCTTA
388 GATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
*
1648561 AATAAGACAAGCATCGATTCTCA
453 AATAAGACAAGCATCGATTCTCG
* * * * *
1648584 TAACAATCTCCATTCTTTTCAAGAATGGGATCTAAAAACACATTCTATTAAATAGGATACATGAC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
** ** * * *
1648649 AGCGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTCCGTCGTTTGTGATAGAATCAATGTTGGTC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * ** * * *
1648713 CCTCAAATAAGATAAACATGAATACTTTTACTATTCCTCTTTCTTTTCAAGATTAGACACTTTAA
131 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
* * ** * * *
1648778 ACATAGTCTTCTCA-TAAGGATACAAGATATTAATG-TTTTCATTTTGCAAGAAAGGATTTCTTC
196 ACATAGTCTTCTCACT-AGGATACACGATATTGATGCTTTGGA-TTCGCAAGAAAGGCTTTTTTC
* * * *
1648841 CCACCAATTTTTGTAAAGTCAAAGTTCGCGCCTCAATTGAGCCAAACATGGAATCTAGTTTTGAT
259 CCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGAT
* * * *
1648906 CTTTATTCATTTTGTGATTAGGTACTATAAAAACATTCTCCTCATTAAGATTAACGATATTGATT
324 CTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATG
* * * * * *
1648971 ATTTTCTTTTACGTTGAAATCTTTTCTTTG-CTTGATTTTCCTTAAAATCCAAGCTCATCGCTTA
389 ATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTA
1649035 AATAAGACAAGCATCGATTCTCG
453 AATAAGACAAGCATCGATTCTCG
* * * *
1649058 CGATAATCTCCATTCTTTTTAAGATTGGGATCCAAAAACACATT-TCCTTCATTAGGATACATGA
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCT-ATTCATTAGGATACATGA
* * * *
1649122 CTTTAATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * *
1649187 TCTCTTAAATCAGACAAACATGAATACTCATACTATTACCCATTCTTTTCAAGATTACGCACCTT
129 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT
* * * * *
1649252 AAACATAGTCTTCTCATTTGGATACACGATGTTAATGCTTTGGTTTCGCAAGAAAGG-TTTCTTT
194 AAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTT-TTT
* * * *
1649316 CTCACCAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCAAGTTTTGA
258 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* * * *
1649380 TCTTCATTTATTTTGTGATAAGGCACTATGAAAACATTCTCCTCTTTAAGATTAATGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
* * **
1649445 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTGTCCCTTA
388 GATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
*
1649510 AATAAGACAAGCATCAATTCTCG
453 AATAAGACAAGCATCGATTCTCG
* * * *
1649533 TAACAATCTCCATTCCTTTCAAGATTAGGATCCAAAAACACATTCTATTCATTAGGATACAGGAC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* *
1649598 AGTGATGCTTTGGTGTCGTCAA-AAAAGCTTTTTTT-CAGCCATTTTTGATAGAATCAAAGTTTG
66 ATTGATGCTTTGGTGTCG-CAAGAAAAGCTTTTTTTCCA-CCGTTTTTGATAGAATCAAAGTTTG
* * * * * * * * **
1649661 TCTCTTAGATAAGACAAACGTGAATAGTCATACTAATCTCTATTTTTTTCGAGATTAGGCACCAT
129 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT
** * * * * * * ** * *
1649726 AAATGTAGTTTTCTC-GTAAGGATACAGGATATTAATGCTTTCGTTTCATACA-AAATGCTTTCT
194 AAACATAGTCTTCTCACT-AGGATACACGATATTGATGCTTTGGATTCGCA-AGAAAGGCTTTTT
* * *** * *
1649789 TCCTACCAATTTTTGTAAAGTCAAAGTCCGTGCC-CAAGCAAGCCAAATGTGGATTCTAGTATTG
257 TCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTG
* * * * *
1649853 ATCTTCATTCATTTGGTGATTGGGCACTATAAAAACATTCTCCTTAGTAAGATTAATGATATTGG
322 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGA
* * *
1649918 TGATTTT-TTTTGCA-AGAAAATCTTTTCCTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
387 TGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
*
1649981 TAAGTAAGACAAGCATCGATTCTCG
451 TAAATAAGACAAGCATCGATTCTCG
* * * * *
1650006 TAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACACATCCTATTTATTAGGATACATAAC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* * * * *
1650071 AATGATGCTTTGGTG-CTGCAGGAAAAGC-TTTTTTCCATCATTTTTGATAAAATCAAAGTTTGT
66 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
1650134 CTCTTAAATAAGACAAACAAGAATACTCCTACTATTCCTCGTTCTTTTCAAGATTAGGCACTATA
130 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTA
* * * * * * *
1650199 AGCATAGTCTTCTC-GTAAGGATATACGATATTGATGCTTT-AATTTTGCAAGAAAGGATTTCTT
195 AACATAGTCTTCTCACT-AGGATACACGATATTGATGCTTTGGA-TTCGCAAGAAAGGCTTTTTT
* **
1650262 CCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTCAAATGAGCCAAACGTGGAAACTAGTTTTGA
258 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* *
1650327 TCTTCATT-ATTTTGTGATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAATGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
* *
1650391 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCACTATTTTCCTTAAAATCAAAGTTCATCCCTTA
388 GATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
1650456 AATAAGACAAGCATCGATTCTCG
453 AATAAGACAAGCATCGATTCTCG
* * *
1650479 TAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* * * *
1650544 AGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCATCATTTTTGCTAGAATCAAAGTTTGTC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * * **
1650609 TCGTAAATTAGATAAACATGAATACTTATACAATTCTACATTCTTTTCAAGATTAGGCACTTTAA
131 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
* * *** * *
1650674 ACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTCGTTTTATAAGAAAAGCTTTCTTCCC
196 ACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCCC
** * * ** *
1650739 AAGAAATTTTTGTAAGGTCAAAATTTATGCCTCAAATGAGCCAAACGTGGATAT-TAGTTTTAAT
261 -ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGAT-TCTAGTTTTGAT
* * * **
1650803 CTTTATTCATTTTTTGATTAGGCACTATAAAAACATTATCCTTTTTAAGATTAATGATATTGATG
324 CTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATG
*
1650868 ATTTTCTTTTGCATTGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
389 ATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
1650933 ATAAGACAAGCATCGATTCTCG
454 ATAAGACAAGCATCGATTCTCG
* * * * * *
1650955 TAACAATCTCCATTATTTTCAA-ATTTAGGATCCATAAACACATTCTCTTCATTAGGATACAAGA
1 CAACAATCTCCATTCTTTTCAAGA-TTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA
* *
1651019 CATTGATGCTTTGGTGTCGCAAGAAATA-TTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
65 CATTGATGCTTTGGTGTCGCAAGAAA-AGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
1651083 GTCTTTTAAGTCAGACCAACAAGAATACTCATACTATTCCCTATTCTTTTCAAGATTAGGCACTT
128 GTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTT
* * * * * *
1651148 TAAACATAGTTTTCTCACTAGGACACGCGATATTGGTGCTTTGGATTCGTAAGAAAGGCTCTTTT
193 TAAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTT
* * *** * * *
1651213 CCCCCCAATTTTTGTAAAGTCTAAGTTCGCATCTCAAATGAGCCAAACGCGAATTCTAGTGTTGA
258 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* * *
1651278 TCTTCTTTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTTATTAAGATTAATGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
*
1651343 GATTTTCTTTTAG-ATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCAT-CCTC
388 GATTTTCTTTT-GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT-
*
1651406 TAAATAAGACAAGCATCGATTCTTG
451 TAAATAAGACAAGCATCGATTCTCG
* ** ** *
1651431 CAACAATCTCTATTCCGTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATATA-GAG
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA-
* * **
1651495 CATTGATGCTTTGGTGTCACAAGAAATGCTTTTTTTTCCACCGTTTTCAATAGAATCAAAGTTTG
65 CATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * * *
1651560 CCTCTTAAAGAAGACAAATATGAATACTCATACTATTCTCAATTCTTTTGAAGATTAGGCATTTT
129 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTT
* * * * * * *
1651625 AAGCATTGTCTTCTCATTAGGATACACGATATTGATGCATT-CATTTCACAAGAAAGGCTTTCTT
194 AAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGA-TTCGCAAGAAAGGCTTTTTT
* * * * *** * *
1651689 CCCACTAATTTTTGCAAAGTCAAAGTTCATGCCTTAAGCAAGCCAAACGTAGTTTCTAGTTTTGA
258 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
* * *
1651754 TCTTTATTCATTTTGTGATTAGGCGCTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
* * ** * *
1651819 GATTTTGTTTCGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAACGATCATCCCTTA
388 GATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
1651884 AATAAGACAAGCATCGATTCTCG
453 AATAAGACAAGCATCGATTCTCG
* * * * * *
1651907 TAACAATCTCCATTCTTTTCAAGAATGGGATCCAAAAACACATTCTACTAAATAGGATACATGAG
1 CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
* ** * **
1651972 AGTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTCCGTCGTTTGTGATAGAATCATTGTTTGTC
66 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * * * * * * * *
1652036 CCTTAAACAAGATAAATATGAATAATCTTACTATTCCTCGTTCTTTTCAGGTTTCGGCACTTTAA
131 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
* * * * * *
1652101 ACATAGTCTTCTC-GTAAGGATACACGATATTGATGCTTTCGTTTCACAAGAAAGGATTTCTTCC
196 ACATAGTCTTCTCACT-AGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCC
*** * * * *
1652165 CACCAATTTTTGTAAAGTCAAAGTTTACGCCTCAATTGAGCCAAACATGAAATT-TAGTTTTAAT
260 CACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTG-GATTCTAGTTTTGAT
*
1652229 CTTCATTCATTTTGTGATTAGGCACTATAAAAATATTCTCCT
324 CTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCT
1652271 TGTCGCAACG
Statistics
Matches: 6392, Mismatches: 938, Indels: 261
0.84 0.12 0.03
Matches are distributed among these distances:
445 135 0.02
446 249 0.04
447 3 0.00
448 1 0.00
453 1 0.00
458 1 0.00
460 1 0.00
462 1 0.00
464 1 0.00
469 1 0.00
471 1 0.00
472 350 0.05
473 625 0.10
474 1254 0.20
475 1292 0.20
476 1932 0.30
477 398 0.06
478 143 0.02
479 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAA
ACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGATTCGCAAGAAAGGCTTTTTTCCC
ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCT
TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAT
TTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCG
Found at i:1655488 original size:33 final size:33
Alignment explanation
Indices: 1655431--1655530 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 33
1655421 AAAATTCCTA
**
1655431 AATGTATCGATACAAAG-ATCAATGTATCGATAC
1 AATGTATCGATACATTGAAT-AATGTATCGATAC
* *
1655464 AATTTTTCGATACATTGAATAATGTATCGATAC
1 AATGTATCGATACATTGAATAATGTATCGATAC
*
1655497 AATGTATCGATACATTGAATAATGTATTGATAC
1 AATGTATCGATACATTGAATAATGTATCGATAC
1655530 A
1 A
1655531 TTTCCTTGGC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 57 0.97
34 2 0.03
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (33 bp):
AATGTATCGATACATTGAATAATGTATCGATAC
Found at i:1655495 original size:20 final size:20
Alignment explanation
Indices: 1655470--1655532 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
1655460 ATACAATTTT
1655470 TCGATACATTGAATAATGTA
1 TCGATACATTGAATAATGTA
1655490 TCGATAC-------AATGTA
1 TCGATACATTGAATAATGTA
1655503 TCGATACATTGAATAATGTA
1 TCGATACATTGAATAATGTA
*
1655523 TTGATACATT
1 TCGATACATT
1655533 TCCTTGGCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 14
0.70 0.02 0.28
Matches are distributed among these distances:
13 13 0.37
20 22 0.63
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (20 bp):
TCGATACATTGAATAATGTA
Found at i:1655502 original size:13 final size:13
Alignment explanation
Indices: 1655484--1655510 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1655474 TACATTGAAT
1655484 AATGTATCGATAC
1 AATGTATCGATAC
1655497 AATGTATCGATAC
1 AATGTATCGATAC
1655510 A
1 A
1655511 TTGAATAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1656514 original size:49 final size:49
Alignment explanation
Indices: 1656399--1656983 Score: 372
Period size: 49 Copynumber: 12.5 Consensus size: 49
1656389 TGAAGAAGAA
* ** * * * *
1656399 TGCCAATGTGCTGAGACAAGGCCAACGACATTGGGCTTGGAATG-TTAAAGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTT--AAAGATT-AAGG
* * ** * * *
1656450 TGCCAATATGTTGATTCAAGGCCAACGATATCGAACTTAAAGGTAAAAG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
*
1656499 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGGTTAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGA---TTAAGG
* * * *
1656551 TGCCAATGTGTTGATTCAAGGCCAATGACATCGGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* *
1656600 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATTAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* ** * * *
1656649 TACCAATATGCTGATTCAAGGCCGGCGATAT-GG------GGCTT---G
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* * * * * *
1656688 TGCCAATCTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* * * *
1656737 TGCCAATATGCGGATTCAAGGCCAATGACATTGGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* * * *
1656786 TGCCAATATGCTGATTCAAGGCCAGCGATAT-GG------GGCTT---G
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* * * * * * *
1656825 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTAGAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* * * *
1656873 TGCCAATATGCTGATTCAAGGCCAGCGATATTGG-------GCTT---G
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
* * * * *
1656912 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGA-CAAGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
1656960 TGCCAATATGCTGATTCAAGGCCA
1 TGCCAATATGCTGATTCAAGGCCA
1656984 GCGATATTGG
Statistics
Matches: 423, Mismatches: 76, Indels: 73
0.74 0.13 0.13
Matches are distributed among these distances:
39 87 0.21
40 4 0.01
41 1 0.00
42 5 0.01
46 4 0.01
48 59 0.14
49 189 0.45
50 1 0.00
51 30 0.07
52 43 0.10
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATTAAGG
Found at i:1656592 original size:101 final size:100
Alignment explanation
Indices: 1656399--1656998 Score: 420
Period size: 88 Copynumber: 6.4 Consensus size: 100
1656389 TGAAGAAGAA
* ** * ** * *
1656399 TGCCAATGTGCTGAGACAAGGCCAACGACATTGGGCTTGGA-ATGTTAAAGATGCCAATATGTTG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGTT-AAGGTGCCAATATGCTG
* ** * * *
1656463 ATTCAAGGCCAACGATATCGAACTTAAAGGTAAAAG
65 ATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
* *
1656499 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGGTTAAGGTGCCAATGTGTTG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT-GTTAAGGTGCCAATATGCTG
*
1656564 ATTCAAGGCCAATGACATCGGTCTTAAAGATGAAGG
65 ATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
* *
1656600 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA--TTAAGGTACCAATATGCTGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGTTAAGGTGCCAATATGCTGA
** * * *
1656663 TTCAAGGCCGGCGATATGGGGC-T-----T----G
66 TTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
* * * * *
1656688 TGCCAATCTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATG--AAGGTGCCAATATGCGGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGTTAAGGTGCCAATATGCTGA
* *
1656751 TTCAAGGCCAATGACATTGGTCTTAAAGATGAAGG
66 TTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
* * * *
1656786 TGCCAATATGCTGATTCAAGGCCAGCGATA-TGG-------G--GCTT---GTGCCAATGTGTTG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATG-TTAAGGTGCCAATATGCTG
* * * * *
1656838 ATTCAAGGCCAGCGACATTGGTTTTAGAGA-CAAGG
65 ATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
* * * *
1656873 TGCCAATATGCTGATTCAAGGCCAGCGATATTGG-------G--CTT---GTGCCAATGTGCTGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGTTAAGGTGCCAATATGCTGA
* * * *
1656926 TTCAAGGCCAACAACATTGGTCTTAAAGA-CAAGA
66 TTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
* * *
1656960 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTA
1656999 TGCCAATGTG
Statistics
Matches: 422, Mismatches: 55, Indels: 54
0.79 0.10 0.10
Matches are distributed among these distances:
87 113 0.27
88 114 0.27
89 1 0.00
90 1 0.00
92 1 0.00
94 1 0.00
97 4 0.01
98 61 0.14
100 35 0.08
101 88 0.21
102 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (100 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGTTAAGGTGCCAATATGCTGA
TTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
Found at i:1656796 original size:137 final size:137
Alignment explanation
Indices: 1656550--1657172 Score: 619
Period size: 137 Copynumber: 4.6 Consensus size: 137
1656540 GATGGTTAAG
** * * *
1656550 GTGCCAATGTGTTGATTCAAGGCCAATGACATCGGTCTTAAAGATGAAGGTGCCAATGTGCTGAT
1 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAATATGCTGAT
* *
1656615 TCAAGGCCAACGACATTGGTCTTAAAGATTAAGGTACCAATATGCTGATTCAAGGCCGGCGATAT
66 TCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGCGATAT
1656680 GGGGCTT
131 GGGGCTT
* *
1656687 GTGCCAATCTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAATATGCGGAT
1 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAATATGCTGAT
* *
1656752 TCAAGGCCAATGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
66 TCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGCGATAT
1656817 GGGGCTT
131 GGGGCTT
* *
1656824 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTAGAGA-CAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAATATGCTGAT
* * * * * * *
1656888 TCAAGGCCAGCGATATTGGGCTT---G-T----G--CCAATGTGCTGATTCAAGGCCAACAACAT
66 TCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGCGATAT
* *
1656943 TGGTCTT
131 GGGGCTT
* * * *
1656950 AAAGACAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A--TGCCAA
1 --------G-TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAA
* * * * * * * *
1657005 TGTGTTGATTCAAAGCCAGCAACATTGGTCTTAAAGA-CAAGGTGCCAATATGTTGATTCAAGGC
57 TATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTACCAATATGCTGATTCAAGGC
**
1657069 CAGCGATATTTGGC-T
122 CAGCGATATGGGGCTT
* *
1657084 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGAT-AAGGTGCTAATATGCTGA
1 G-TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAATATGCTGA
* * *
1657148 TTCAAGGCCAGCGATATTGGACTTA
65 TTCAAGGCCAACGACATTGGTCTTA
1657173 TGCCAATGTG
Statistics
Matches: 404, Mismatches: 53, Indels: 60
0.78 0.10 0.12
Matches are distributed among these distances:
126 97 0.24
127 1 0.00
128 2 0.00
129 1 0.00
132 2 0.00
133 3 0.01
134 3 0.01
135 90 0.22
136 37 0.09
137 168 0.42
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (137 bp):
GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAGAGATGAAGGTGCCAATATGCTGAT
TCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGCGATAT
GGGGCTT
Found at i:1656840 original size:39 final size:39
Alignment explanation
Indices: 1656785--1657205 Score: 241
Period size: 39 Copynumber: 9.9 Consensus size: 39
1656775 AAAGATGAAG
*
1656785 GTGCCAATATGCTGATTCAAGGCCAGCGATATGGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * **
1656824 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATT-G-----G-G-C-TT
1656872 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * *
1656911 GTGCCAATGTGCTGATTCAAGGCCAACAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1656950 AAAGACAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 --------G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * * * *
1656998 ATGCCAATGTGTTGATTCAAAGCCAGCAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* *
1657037 AAAGACAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTTGGC-T
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * *
1657084 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGAT
1 G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T
* *
1657130 AAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
1657172 ATGCCAATGTGCTGATTCAAGGCTAGCGACATTG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTG
1657206 ATCTTAAAGA
Statistics
Matches: 295, Mismatches: 49, Indels: 76
0.70 0.12 0.18
Matches are distributed among these distances:
38 1 0.00
39 155 0.53
40 2 0.01
41 1 0.00
42 2 0.01
45 1 0.00
46 2 0.01
47 5 0.02
48 125 0.42
49 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:1656895 original size:48 final size:48
Alignment explanation
Indices: 1656824--1657172 Score: 277
Period size: 48 Copynumber: 7.8 Consensus size: 48
1656814 TATGGGGCTT
* * *
1656824 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
* *
1656872 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT---------
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
* * * *
1656911 GTGCCAATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
* * *
1656959 ATGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
* * * * *
1656999 -TGCCAATGTGTTGATTCAAAGCCAGCAACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
* *
1657046 GTGCCAATATGTTGATTCAAGGCCAGCGATATTTGG-C-T---G---A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGACA-TTGGTCTTAGAGACAAG
* *
1657086 -TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
* * *
1657133 GTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA
1657173 TGCCAATGTG
Statistics
Matches: 239, Mismatches: 33, Indels: 58
0.72 0.10 0.18
Matches are distributed among these distances:
38 4 0.02
39 94 0.39
40 1 0.00
41 2 0.01
43 1 0.00
44 1 0.00
46 2 0.01
47 1 0.00
48 129 0.54
49 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAG
Found at i:1657218 original size:87 final size:87
Alignment explanation
Indices: 1656737--1657215 Score: 715
Period size: 87 Copynumber: 5.5 Consensus size: 87
1656727 GAGATGAAGG
* * ** *
1656737 TGCCAATATGCGGATTCAAGGCCAATGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATT
* *
1656802 CAAGGCCAGCGATATGGGGCTTG
65 CAAGGCCAGCGATATTGGGCTTA
* * *
1656825 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
*
1656890 AAGGCCAGCGATATTGGGCTTG
66 AAGGCCAGCGATATTGGGCTTA
* * *
1656912 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGACAAGATGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
1656977 AAGGCCAGCGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
* * * *
1656999 TGCCAATGTGTTGATTCAAAGCCAGCAACATTGGTCTTAAAGACAAGGTGCCAATATGTTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
* *
1657064 AAGGCCAGCGATATTTGGCTGA
66 AAGGCCAGCGATATTGGGCTTA
* * *
1657086 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGATAAGGTGCTAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
*
1657151 AAGGCCAGCGATATTGGACTTA
66 AAGGCCAGCGATATTGGGCTTA
* *
1657173 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGATCTTAAAGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA
1657216 TAAAGAAAAG
Statistics
Matches: 355, Mismatches: 36, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
87 319 0.90
88 36 0.10
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (87 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTA
Found at i:1658528 original size:14 final size:15
Alignment explanation
Indices: 1658509--1658544 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
1658499 ATTCGGACCC
1658509 TTTTTTGTTG-TTGT
1 TTTTTTGTTGTTTGT
*
1658523 TTTTTTTTTGTTTGT
1 TTTTTTGTTGTTTGT
1658538 TTTTTTG
1 TTTTTTG
1658545 ACGGAGGACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (15 bp):
TTTTTTGTTGTTTGT
Found at i:1662614 original size:31 final size:31
Alignment explanation
Indices: 1662576--1662642 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
1662566 CTGACTGCGC
* *
1662576 ATTGGCCTTGAATCCTAGGTAGGTGTCTAAA
1 ATTGGCCTTGAATCCTAAGTAGGTGTCGAAA
*
1662607 ATTGGCCTTGAATCCTAAGTAGTTGTCGAAA
1 ATTGGCCTTGAATCCTAAGTAGGTGTCGAAA
1662638 ATTGG
1 ATTGG
1662643 TCCGGACAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (31 bp):
ATTGGCCTTGAATCCTAAGTAGGTGTCGAAA
Found at i:1663566 original size:474 final size:471
Alignment explanation
Indices: 1662667--1664578 Score: 2312
Period size: 474 Copynumber: 4.0 Consensus size: 471
1662657 GGTGTCTACA
* * * *
1662667 CTCCTCATTAAGATTAACGATATTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTG-CTTGAT
1 CTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTT-AT
* * * * * *
1662731 TTTCCTTAAAATCAAAGCTCATCGCTTAAATAAGATAAGTATTGATTCTAGCAACAATCTCCATT
65 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATT
* * * **
1662796 CTTTTTAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACTTTGATGCTTTGGT
130 CTTTTCAAGATTAGGATCCAAAAACACATTCCATTCATTAGGATACATGACAGTGATGCTTTGGT
* *
1662861 GT-GCAAAAAATGCTTTTCTTTCCA--ATGTTTTCTATAGAATCAAAGTTTGTCTCTTAAATCAG
195 GTCGCAAAAAA-GC-TTT-TTTCCACCAT-TTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
1662923 AAAAACATGAATACCTGTACTATTCCCCATTCTTTTCAAGATTACGCACTTTAAACATAGTCTTA
255 ACAAACATGAATATC-GTACTATTCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTC
** * *
1662988 TCATTTTGATACACGTTATT-ATTGCTTTGGTTTCGCAAGAAAGG-TTTCTTTCTCACCAATTTT
319 TCATTAGGATACACGATATTGA-TGCTTTGGTTTCACAAGAAAGGCTTT-TTTC-CACCAATTTT
* * *
1663051 TGT-AAGTAAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCAATT-AT
381 TGTAAAGTCAAAATCCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC-ATTCAT
* * *
1663114 TTTGTGATAAGGCACTATGAAAAGATT
445 TTTGTGATTAGGCACTATAAAAACATT
1663141 CTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
1 CTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
* *
1663206 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTC
66 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTC
* * *
1663271 CTTTCAAGATTAGGATCCAAAAACACATTCTATTCATTAGGATACAGGACAGTGATGCTTTGGTG
131 TTTTCAAGATTAGGATCCAAAAACACATTCCATTCATTAGGATACATGACAGTGATGCTTTGGTG
*
1663336 TCGCCAAAAAAGCTTTTTTTCAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
196 TCG-CAAAAAAGCTTTTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * ** ** *
1663401 ACGTGAATAGTCATACTAATCTCCATT-TCTTTCAAGATTAGGCACCATAAATGTAGTCTTCTCG
259 ACATGAATA-TCGTACTATTCTCCATTCT-TTTCAAGATTAGGCACTTTAAACATAGTCTTCTCA
* * * * * * *
1663465 TAAGGATACAGGATATTGATACTTTCGTTTCATACGAAAGG-TTTTCTTCCGACCAATTTTTATA
322 TTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT-TTCC-ACCAATTTTTGTA
* ** * * *
1663529 AAGTCAAAGTCCGTGCC-CAAGCAAGCCAAATGTGGATTCTAGTTTTGATTTTTATTCATTTTGT
385 AAGTCAAAATCCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGT
*
1663593 GATTGGGCACTATAAAAACATT
450 GATTAGGCACTATAAAAACATT
* ** * * * * * *
1663615 ATCCTCAATAAGATTAAGGATATTGGTGATTTT-TTTTGCAAGAAAATCTTTTCCTTGCCCTATT
1 CTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
* * *
1663679 TACCTTAAAATCAAAGTTCATCCCTTAAGTAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
66 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTC
* * *
1663744 TTTTCAAGATTAGGATCCAAAAACACA-TCCTATTTATTAAGATACATGACAGTGATGCTTTGGG
131 TTTTCAAGATTAGGATCCAAAAACACATTCC-ATTCATTAGGATACATGACAGTGATGCTTTGGT
* * * * * *
1663808 GCCGCAGGAAAAGATTTTTTCCATCC-TTTTTGACAAAATCAAAGTTTGTCTCTTAAATAGGACA
195 GTCGCA-AAAAAGCTTTTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * *
1663872 AACAAGAATA-C-TCCTATTCCCCGTTCTTTTCAAGATTAGGCACTTTAAATACAGTCTTCTCAT
258 AACATGAATATCGTACTATTCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAT
* * * * *
1663935 GAGGATACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAA-TTTTGTAAA
323 TAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCT-TTTTTCCACCAATTTTTGTAAA
* * * *
1663999 GTCAAAATTCATGCCCCAAATGAGCC-AACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGA
387 GTCAAAATCCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGA
*
1664063 TTAGGTACTATAAAAACATT
452 TTAGGCACTATAAAAACATT
* * **
1664083 TTCCTCTTAAAGATTAATGATATTGATGATTTTCTTTCACATGGAAATCTTTTCTTTGCCTTATT
1 CTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
* * *
1664148 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTGTCGCAGCAATCTCCATTG
66 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTC
* * **
1664213 TTTTCAAGATTAGGATCAAAAAACACATTCCCTTCATTAGGATACATGACTTTGATGCTTTGGTG
131 TTTTCAAGATTAGGATCCAAAAACACATTCCATTCATTAGGATACATGACAGTGATGCTTTGGTG
* * * * * * *
1664278 TCGTAAGAAATGCTTTCCTTTCCACCGTTTCTCATAGAATCAAAGTTTGTCTCCTAAATTAGACA
196 TCGCAA-AAAAGCTTT--TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * *
1664343 AACTTGAATGCTCGTACTATTCTCCATTCTTTTAAAGATTAGGCACTTTAAACATAGTCTTGTCA
258 AACATGAAT-ATCGTACTATTCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCA
* * *
1664408 TTAGGATACACGATATTGGTGCATTGGTTTCACAAGAAAGGCTTTTTTATCACCAATTTTTGTAA
322 TTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTT-CCACCAATTTTTGTAA
* *
1664473 AGTGAAAATCCGTGCCTCAAATAAGCCAAACGTCGATTCTAGTTTTGATCTTCATTCATTTTGTG
386 AGTCAAAATCCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTG
*
1664538 ATTAGGCACTATAAAAGCATT
451 ATTAGGCACTATAAAAACATT
** *
1664559 CTATTCTTTAAAATTAATGA
1 CTCCTCTTTAAGATTAATGA
1664579 CAGTGATGCT
Statistics
Matches: 1223, Mismatches: 184, Indels: 60
0.83 0.13 0.04
Matches are distributed among these distances:
468 100 0.08
469 233 0.19
470 11 0.01
471 47 0.04
472 47 0.04
473 178 0.15
474 472 0.39
475 56 0.05
476 79 0.06
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (471 bp):
CTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTC
TTTTCAAGATTAGGATCCAAAAACACATTCCATTCATTAGGATACATGACAGTGATGCTTTGGTG
TCGCAAAAAAGCTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAATATCGTACTATTCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAG
GATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCACCAATTTTTGTAAAGTCA
AAATCCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAG
GCACTATAAAAACATT
Found at i:1664779 original size:314 final size:316
Alignment explanation
Indices: 1664296--1664872 Score: 809
Period size: 314 Copynumber: 1.8 Consensus size: 316
1664286 AATGCTTTCC
* ** *
1664296 TTTCCACCGTTTCTCATAGAATCAAAGTTTGTCTCCTAAATTAGACAAACTTGAATGCTCGTACT
1 TTTCCACCGTTTCTCATAGAATCAAAGTTTGTCTCCTAAATAAGACAAAAATGAATGCTCATACT
* ** * * *
1664361 ATTCTCCATTCTTTTAAAGATTAGGCACTTTAAACATAGTCTTGTCATTAGGATACACGATATTG
66 AATCTCCATTCTTTTAAAGATTAGGCACCATAAACACAGTCTTCTCATAAGGATACACGATATTG
* * * * * *
1664426 GTGCATTGGTTTCACAAGAAAGGCTTTTTTATCACCAATTTTTGTAAAGTGAAAATCCGTGCCTC
131 ATGCATTCGTTTCACAACAAAGGCTTTCTTACCACCAATTTTTGTAAAGTCAAAATCCGTGCCTC
* * *
1664491 AAATAAGCCAAACGTCGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAGC
196 AAATAAGCCAAACGTCGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCACTACAAAAAC
1664556 ATTCTATTCTTTAAAATTAATGACAGTGATGCTTTGGTGTGACAAGAACAACTTTT
261 ATTCTATTCTTTAAAATTAATGACAGTGATGCTTTGGTGTGACAAGAACAACTTTT
* * * *
1664612 TTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGGCAAAAATGAATAG-TCATAC
1 TTTCCACCGTTTCTCATAGAATCAAAGTTTGTCTCCTAAATAAGACAAAAATGAAT-GCTCATAC
*** ** *
1664676 TAATCTCCATT-TTTTCGGGATTAGGCACCATAAATGCAGTCTTCT-ATAAGGATACATGATATT
65 TAATCTCCATTCTTTTAAAGATTAGGCACCATAAACACAGTCTTCTCATAAGGATACACGATATT
* * * *
1664739 GATGCTTTCGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCT
130 GATGCATTCGTTTCACAACAAAGGCTTTCTTACCACCAATTTTTGTAAAGTCAAAATCCGTGCCT
* *
1664804 TAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCACTACAAAAA
195 CAAATAAGCCAAACGTCGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCACTACAAAAA
1664869 CATT
260 CATT
1664873 GTCCTCATTA
Statistics
Matches: 225, Mismatches: 35, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
314 135 0.60
315 25 0.11
316 64 0.28
317 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (316 bp):
TTTCCACCGTTTCTCATAGAATCAAAGTTTGTCTCCTAAATAAGACAAAAATGAATGCTCATACT
AATCTCCATTCTTTTAAAGATTAGGCACCATAAACACAGTCTTCTCATAAGGATACACGATATTG
ATGCATTCGTTTCACAACAAAGGCTTTCTTACCACCAATTTTTGTAAAGTCAAAATCCGTGCCTC
AAATAAGCCAAACGTCGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCACTACAAAAAC
ATTCTATTCTTTAAAATTAATGACAGTGATGCTTTGGTGTGACAAGAACAACTTTT
Found at i:1664853 original size:157 final size:158
Alignment explanation
Indices: 1664410--1664860 Score: 411
Period size: 156 Copynumber: 2.9 Consensus size: 158
1664400 TCTTGTCATT
* * * *
1664410 AGGATACACGATATTGGTGCATTGGTTTCACAAGAAAGGCTTTTTTATCACCAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTACCACCAATTTTTGTAAAG
* * * * * *
1664475 TGAAAATCCGTGCCTCAAATAAGCCAAACGTCGATTCTAGTTTTGATCTTCATTCATTTTGTGAT
66 TCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGAT
* * *
1664540 TAGGCACTATAAAAGCATTCTATTCTTTA
131 TAGGCACCATAAAAGCAGTC-ATTCTATA
* * * * * * * * *
1664569 A-AATTA-ATGACAGTGATGCTTTGGTGTGACAAGAACA-ACTTTTTTTCTACC-GTTTTTGATA
1 AGGA-TACATGATATTGATGCTTTGGTTTCACAAGAA-AGGCTTTTTTACCACCAATTTTTG-TA
* * * ** * ** * *
1664630 GAA-TCAAAGTTTGT-CTCCTAAATAAGGCAAAAATGAATAGTC-A-TACTAATCTCCATT--TT
63 -AAGTCAAAGTTCGTGC-CTTAAATAAGCCAAACGTGGAT--TCTAGTTTTGATCTTCATTCATT
*
1664689 TTCGGGATTAGGCACCATAAATGCAGTC-TTCTATA
124 TT-GGGATTAGGCACCATAAAAGCAGTCATTCTATA
* * * *
1664724 AGGATACATGATATTGATGCTTTCGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTACCACCAATTTTTGTAAAG
1664789 TCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGAT
66 TCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGAT
1664854 TAGGCAC
131 TAGGCAC
1664861 TACAAAAACA
Statistics
Matches: 219, Mismatches: 55, Indels: 38
0.70 0.18 0.12
Matches are distributed among these distances:
154 2 0.01
155 13 0.06
156 77 0.35
157 47 0.21
158 71 0.32
159 7 0.03
160 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (158 bp):
AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTACCACCAATTTTTGTAAAG
TCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGAT
TAGGCACCATAAAAGCAGTCATTCTATA
Found at i:1665855 original size:475 final size:475
Alignment explanation
Indices: 1664575--1669602 Score: 5668
Period size: 475 Copynumber: 10.7 Consensus size: 475
1664565 TTTAAAATTA
* *
1664575 ATGACAGTGATGCTTTGGTGT-GACAAGAACAA-CTTTTTTTCTACCGTTTTTGATAGAATCAAA
1 ATGACATTGATGCTTTGGTGTCG-CAAGAA-AAGCTTTTTTTCCACCGTTTTTGATAGAATCAAA
* * * * * * **
1664638 GTTTGTCTCCTAAATAAGGCAAAAATGAATAGTCATACTA-ATCTCCATT-TTTTCGGGATTAGG
64 GTTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTC-CCATTCTTTTCAAGATTAGG
** *** * * * * * *
1664701 CACCATAAATGCAGTCTTCT-ATAAGGATACATGATATTGATGCTTTCGTTTCACAACAAAGGCT
128 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT
* * *
1664765 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGT
193 TTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * *
1664830 TTTGATCTTCATTCATTTTGGGATTAGGCACT-ACAAAAACATTGTCCTCATTAAGATTAATGAT
258 TTTGATCTTCATTCATTTTGTGATTAGGCA-TAATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * *
1664894 ATTGGTGATTTTCTTTCGC-ATGCAAATCTTTTCTTTACCCTATTTTCCTTAAAATTAAAGTTCA
322 ATTGATGATTTTCTTTTGCGTTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* *
1664958 TCCCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAA
386 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
1665023 AAACACATTCTATTCATTAGGATAC
451 AAACACATTCTATTCATTAGGATAC
** * * * * *
1665048 ATGGTAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTCATCGTTTGTGATAGAATCAAAGT
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGT
* * * *
1665113 TTGTCTCTAAAATAAGACAAACATGAATACTCT-TACTA-TTCCTCATTCCTTTCAGGATTAGAC
66 TTGTCTCTTAAATAAGACAAACATGAATACT-TATACTATTTCC-CATTCTTTTCAAGATTAGGC
* * * * *
1665176 ACTTTAAACATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATT
129 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTT
* * * * * *
1665241 TCTT-CTACTAGTTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTT
194 TCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
* *
1665305 TTGATCTTTATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATAT
259 TTGATCTTCATTCATTTTGTGATTAGGCATAATAAAAACATTCTCCTCATTAAGATTAATGATAT
*
1665370 TGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAACATCAAAGTTCATCC
324 TGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * *
1665435 TTTCAATAAGGCAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
389 CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
1665500 CACATTCCT-TTCATTAGGATAC
454 CACATT-CTATTCATTAGGATAC
* * ** * *
1665522 TTGACTTTGATGCTTTGGTGTCATAA-AAAATGCATTTCTTTCCACCGTTTTCGATAGAATCAAA
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAA-GC-TTTTTTTCCACCGTTTTTGATAGAATCAAA
* * * * *
1665586 GTTTGTCTCTTAAATCAGGCAAAGATGAATACTTGTACTATTTGCCATTCTTTTCAAGATTAGGC
64 GTTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTCCCATTCTTTTCAAGATTAGGC
* * * * *
1665651 GCTTTAAACATAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAAATGTTT
129 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTT
* * * * * * * *
1665716 TATTCCCGCCAATTGTTGT-AAGTGAAAATGCGTGCTTCACATGAGCCAAACGTGGATTCTAATT
194 TCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
* * * *
1665780 TTTATCTTCATTTATTTTGTGATTAGGCATAATAAAAACATTCTCCTCTTTAAGATTAATCATAT
259 TTGATCTTCATTCATTTTGTGATTAGGCATAATAAAAACATTCTCCTCATTAAGATTAATGATAT
* * * * * *
1665845 TAAAGATTTTCTTTTGC-ATGAAAATCTTTTCGTTGCTCTATTTTCCTTAATATCAAAGTTCATC
324 TGATGATTTTCTTTTGCGTTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* *
1665909 CCTTAAATAAGACAAGGATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAA
388 CCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* *
1665974 ACAAATTCTATTAATTAGGATAC
453 ACACATTCTATTCATTAGGATAC
* * * * **
1665997 ATGACAGTAACGCTTTGGTGTCGCAAGAAAAGCTTTTTTT-CGCCAATTTTGATAGAATCAAAGT
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * * * **
1666061 TTGTCTCTTAAATAAAAAAAACATGAATAGTCATATTA-ATCTCCATT-TTTTCGTGATTAGGCA
66 TTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTC-CCATTCTTTTCAAGATTAGGCA
** *** * * * ** * *
1666124 CCATAAATGCAGTCTTCT-ATAAGGATACATGATATTGATGCTTTCCTTTCACAAGAAAAGCTTT
130 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTT
* * *
1666188 CTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTAAAAT-ATGCCAAACGTCGATTCTAGTT
195 CTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGA-GCCAAACGTGGATTCTAGTT
* * * *
1666252 TTGATCTTCATTCATTTTGGGATTAGGCACAATAAAAACATTCTCTTCATTAAGATTAACGATAT
259 TTGATCTTCATTCATTTTGTGATTAGGCATAATAAAAACATTCTCCTCATTAAGATTAATGATAT
* * *
1666317 TGGTGATTTTCTTTCGC-ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
324 TGATGATTTTCTTTTGCGTTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * *
1666381 CCCTAAATAA-A-ATAGCATCAATTCTCGAAACAATCTCCATTCTTTTCAAGATTAGGATCCAAA
388 CCTTAAATAAGACA-AGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
*
1666444 AACACATTTTATTC-TTCAGGATAC
452 AACACATTCTATTCATT-AGGATAC
* * * * * *
1666468 ATGATAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCATCGTTTTTGAGAAAATCAATGT
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGT
** * * *
1666533 TCATCTCTTAAATAAGACAAACATGAATACTCT-TACTA-GTCCTCAGTCTTTTCAGGATTAGGC
66 TTGTCTCTTAAATAAGACAAACATGAATACT-TATACTATTTCC-CATTCTTTTCAAGATTAGGC
** * * * * **
1666596 ACTTTAAGA-ATAGTCGCCTCGTAAGGATACACAATATTGATGCTTTCATTTCGCAAGAAAGGCT
129 ACTTTAA-ACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1666660 TTCCTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTAGATTCTAGT
193 TTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * * *
1666725 ATTGATCATT-ATTTATTTTCTGATTAGGCA-ATATAAAAACAGTCTCCTCATTAAGATTAATGA
258 TTTGATC-TTCATTCATTTTGTGATTAGGCATA-ATAAAAACATTCTCCTCATTAAGATTAATGA
* *
1666788 TATTGATGATTTTCTTCTGCGTTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
321 TATTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
*
1666853 TTCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
386 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
** *
1666918 AAACACATTCTGCTCATTAAGATAC
451 AAACACATTCTATTCATTAGGATAC
* * * * **
1666943 ATGATAGTGATGCTTTTGT-TCGCAAGAAAAGTTTTTTTTCTCGTCGTTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTC-CACCGTTTTTGATAGAATCAAAG
* * * * *
1667007 TTGGTCTCTTAAATCAGACAAACAGGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCA
65 TTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTCCCATTCTTTTCAAGATTAGGCA
* *
1667072 CTTTAAACATAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCGTAAGAAAGGCTCT
130 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT-T
* ** * * *
1667137 T-TTCCCACCAATTTTTGTAAAGTCAAAATCCAAGCCTGAAATAAGCCAAACATGGATTCTAGTT
194 TCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
* * * *
1667201 TTGATCTTCATTGATTTTGTGATTAGGCACT-ATAAAAACTTTATCCTCATCAAGATTAATGATA
259 TTGATCTTCATTCATTTTGTGATTAGGCA-TAATAAAAACATTCTCCTCATTAAGATTAATGATA
* * * * *
1667265 TTAATGATTTTCTTTTGCATTGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAATGTTCATC
323 TTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
1667330 CCCTAAATAAGACAAGCATCGATTCTCCTAACAATCGCCATTCTTTTCAAGAATGGGATCCGAAA
388 CCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
** *
1667395 ACACATTCCCTTCATCAGGATAC
453 ACACATTCTATTCATTAGGATAC
* * * * * *
1667418 ATGGCATT-AGTGCTTTGTTGTCACAAGAAATGTTTTTCTTTCCACCATTTTTGATAGAATCAAA
1 ATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAA
* * ** *
1667482 GTTTGTCTCTTAAATATGGCAAACATGAATACTTGCACTA-TTCCCTATTCTTTTCAACATTAGG
64 GTTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTCCC-ATTCTTTTCAAGATTAGG
* * * *
1667546 CACTTTAAATATAGTCTTCTCACTATGATACACGATATTGGTGCTCTGGTTTCGCAAGAAAGGCT
128 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT
* ** * *
1667611 TTTTTCCCAAGAAGTTTTTGTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAACGTGGATTCCAG
193 TTCTTCCCACCAA-TTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * *
1667676 TATTGATCTTCATTCATTTTGTGATTAGACACAATAAAAACATTCTCCTCATTAAGATTAATGAT
257 TTTTGATCTTCATTCATTTTGTGATTAGGCATAATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * * * * *
1667741 ATTAATGATTTT-ATTTGTGTTGAAATCTTTTATTTGCCCTACTTTCCTTAAAATGAATGTTTAT
322 ATTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * ** * *
1667805 CCCATAAATAAGACAAGCATCGATTCTTGTAACAATCTCTTTTGTTTTCAAGATTGGGATCAAAA
387 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
** *
1667870 AACACATTCCCTTCATTATGATAC
452 AACACATTCTATTCATTAGGATAC
* *
1667894 ATGGCATTGATGCTTTGGTGT--C-------G-----TTTCCACCGTTTCTGATAGAATCAAAGT
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGT
* *
1667945 TTGTCTCTTAAGTAAGATAAACATGAATACTTATACTA-TTCTCCATTCTTTTCAAGATTAGGCA
66 TTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTC-CCATTCTTTTCAAGATTAGGCA
* * *
1668009 CTTTAAACATAGTCTTCTCATTAGGATACACGACATTGGTGCTTTGGTTTCGCAGGAATGG-TTT
130 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * *
1668073 TTATACCACCAATTTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTA
195 CT-TCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
*
1668138 TTGATCTTCATTCATTTTGTGATTAGGCACT-ATAAAAACATTCTCCTCATCAAGA-T--T-A-A
259 TTGATCTTCATTCATTTTGTGATTAGGCA-TAATAAAAACATTCTCCTCATTAAGATTAATGATA
* *
1668197 -TGAT-A-------TT--GTTG--A--TTTTCTTTGCCCTATTTCCCTTTAAATCAAAGTTCATC
323 TTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
1668247 CCTTAAATGAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAGGAATAGGATCCAAAA
388 CCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
** *
1668312 ACACATTCTGCTCATTAAGATAC
453 ACACATTCTATTCATTAGGATAC
* * ** *
1668335 ATGATACTGATGCTTTGGT-TCGCAAGAAAAG-TTTTTTTCTCGTCGTTTTTTATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTC-CACCGTTTTTGATAGAATCAAAG
* * * ** *
1668398 TTGGTCTCTTAAATCAGACAAACATAAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCA
65 TTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTCCCATTCTTTTCAAGATTAGGCA
* * * * * * *
1668463 CTTTAAACTTAGTCTTCTCATTAAGATACACGATATTGGTGTTTTGATTTTGTAACAAAGGCTCT
130 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT-T
** * * *
1668528 T-TTCCCACCAATTTTTGTAAAGTCAAAATTCAAGCCTCAAATTAGCCAAACATGGATTCTACTT
194 TCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
*** * * * * *
1668592 TTGATCTTCATTGGCTTTGTAATTAAGCACT-ATAAAAACATTATCCTCGTTATGATTAATGATA
259 TTGATCTTCATTCATTTTGTGATTAGGCA-TAATAAAAACATTCTCCTCATTAAGATTAATGATA
* * * *
1668656 TTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTCCATC
323 TTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * *
1668721 CCCTAAAAAAGACAAGAATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
388 CCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
** *
1668786 ACACATTCCCTTCATTAGCATAC
453 ACACATTCTATTCATTAGGATAC
* * *
1668809 ATGGCATTGATGCTTTGGTGTCGGAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAG
* * *
1668874 TTTGTCTCTTAAATAAGAAAAACATGAATACTCATACTATTCCCCATTC-TTTCGAAGATTAGGC
65 TTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTCCCATTCTTTTC-AAGATTAGGC
* * * *
1668938 A-TCTTAAACATTGTCTTCTTATTAGGATACACGATATTAGTGCTTTGGTTTCGCAAAAAAGGCT
129 ACT-TTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1669002 TTCTTCACACCAA-TTTTGTAAAGTC-AAATTTGTACCTCAAATGAGCCAAACGTGAATTCTAGT
193 TTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
** * * *
1669065 TTTTTTCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATGACA
258 TTTGATCTTCATTCATTTTGTGATTAGGCATAATAAAAACATTCTCCTCATTAAGATTAATGATA
* * * **
1669130 TTGATGATTTTCTTTTGCATTGAATTATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTC
323 TTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * *
1669195 CTTTAAATAAG-CAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTAGTATCAAAAA
388 CCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* ** *
1669259 ACACCTTCCCTTCATTAAGATAC
453 ACACATTCTATTCATTAGGATAC
** * * * * * * *
1669282 ATGACATTGATGCAATAGTGTCGCAAGAAATGCTTTCCTTTCCACCATTTCTGATACAATCAATG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-TTTTCCACCGTTTTTGATAGAATCAAAG
* * * * *
1669347 TTTATCTTTTAAATCAA-ACAAACTTGAATGCTTGTACTA-TTCTCCATTCTTTTCAAGATTAGG
65 TTTGTCTCTTAAAT-AAGACAAACATGAATACTTATACTATTTC-CCATTCTTTTCAAGATTAGG
** * ** *
1669410 TGCTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCATTGGTTTCATAAGAAATGCT
128 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCT
* * * * * *
1669475 TTGTTCTCACCAATTTTTGTAAAGTGAAAATTCCTGCCTCAAATGAGCCAAATGTGGATTTTAGT
193 TTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * * * * * *
1669540 TTTGATCTTCTTTCACTTTGTGATTAAGCACT-ATAAAAACAATCTCTTCTTTAAAATTAATGA
258 TTTGATCTTCATTCATTTTGTGATTAGGCA-TAATAAAAACATTCTCCTCATTAAGATTAATGA
1669603 CAGTGATGCT
Statistics
Matches: 3863, Mismatches: 586, Indels: 210
0.83 0.13 0.05
Matches are distributed among these distances:
440 1 0.00
441 120 0.03
442 1 0.00
443 1 0.00
445 4 0.00
447 2 0.00
449 1 0.00
453 5 0.00
454 228 0.06
455 6 0.00
456 3 0.00
457 2 0.00
458 1 0.00
459 2 0.00
460 109 0.03
461 141 0.04
462 2 0.00
467 1 0.00
468 2 0.00
470 6 0.00
471 156 0.04
472 243 0.06
473 403 0.10
474 837 0.22
475 1013 0.26
476 450 0.12
477 123 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTTCCCATTCTTTTCAAGATTAGGCAC
TTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTC
TTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
GATCTTCATTCATTTTGTGATTAGGCATAATAAAAACATTCTCCTCATTAAGATTAATGATATTG
ATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
CATTCTATTCATTAGGATAC
Found at i:1669784 original size:473 final size:470
Alignment explanation
Indices: 1668209--1669800 Score: 1538
Period size: 474 Copynumber: 3.4 Consensus size: 470
1668199 ATATTGTTGA
* * ** * *
1668209 TTTTCTTTGCCCTATTTCCCTTTAAATCAAAGTTCATCCCTTAAATGAGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGT-CCTTAAATAAGACAAGAATCGATTCTC
* * *
1668274 ATAACAATCTCCATTCTTTTCAGGAATAGG-ATCCAAAAACACATT-CTGCTCATTAA-GATACA
65 AT-ACAATCTCCATTCTTTTCAAG-ATTGGCATCAAAAAACACATTCCT--TCATTAAGGATACA
* * * * * ** * * * *
1668336 TGATACTGATGCTTTGGT-TCGCAAGAAAAG-TTTTTTTCTCGTCGTTTTTTATAGAATCAAAGT
126 TGACATTGATGCTTTAGTGTCGCAAGAAATGCTTTCTTTC-CACCATTTCTGATACAATCAAAGT
** * * *
1668399 TGGTCTCTTAAATCAGACAAACATAAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCAC
190 TTATCTCTTAAATCAAACAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGG-GC
* * * * * *
1668464 TTTAAACTTAGTCTTCTCATTAAGATACACGATATTGGTGTTTTGATTTTGTAACAAAGGCTCTT
254 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGTAAAAAAGGCT-TT
* * * * *
1668529 TTCCCACCAATTTTTGTAAAGTCAAAATTCAAGCCTCAAATTAGCCAAACATGGATTCTACTTTT
318 TTCACACCAATTTTTGTAAAGT-AAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
** * * * * *
1668594 GATCTTCATTGGCTTTGTAATTAAGCACTATAAAAACATTATCCTCGTTATGATTAATGATATTG
382 GATCTTCATTCACTTTGTGATTAAGCACTATAAAAACATTCTCCTCTTTAAGATTAATGACATTG
*
1668659 ATGATTTTCTTTTGCATTGAAATC
447 ATGATTTTCTTTTGCATTGAAAAC
* * *** * *
1668683 TTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTCCATCCCCTAAAAAAGACAAGAATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGT-CCTTAAATAAGACAAGAATCGATTCTC
* * * *
1668748 GTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATT-AGCATACATG
65 AT-ACAATCTCCATTCTTTTCAAGATTGGCATCAAAAAACACATT-CCTTCATTAAGGATACATG
* * * * * *
1668812 GCATTGATGCTTTGGTGTCGGAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
128 ACATTGATGCTTTAGTGTCGCAAGAAATGC-TTTCTTTCCACCATTTCTGATACAATCAAAGTTT
* * *
1668877 GTCTCTTAAAT-AAGAAAAACATGAATACTCATACTATTCCCCATTC-TTTCGAAGATTA-GGCA
192 ATCTCTTAAATCAA-ACAAACATGAATACTCGTACTATTCCCCATTCTTTTC-AAGATTAGGGC-
* * * *
1668939 TCTTAAACATTGTCTTCTTATTAGGATACACGATATTAGTGCTTTGGTTTCGCAAAAAAGGCTTT
254 T-TTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGTAAAAAAGGCTTT
* ** * *
1669004 CTTCACACCAA-TTTTGTAAAGTCAAATTTGTACCTCAAATGAGCCAAACGTGAATTCTAGTTTT
318 -TTCACACCAATTTTTGTAAAGTAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
** * * *
1669068 TTTCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATGACATTG
382 GATCTTCATTCACTTTGTGATTAAGCACTATAAAAACATTCTCCTCTTTAAGATTAATGACATTG
*
1669133 ATGATTTTCTTTTGCATTGAATTA-
447 ATGATTTTCTTTTGCATTGAA-AAC
*
1669157 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTCCTTTAAATAAG-CAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTCC-TTAAATAAGACAAGAATCGATTCT-
* * * *
1669221 GCA-ACAATCTCCATTGTTTTCAAGATTAGTATCAAAAAACACCTTCCCTTCATTAA-GATACAT
64 -CATACAATCTCCATTCTTTTCAAGATTGGCATCAAAAAACACATT-CCTTCATTAAGGATACAT
** *
1669284 GACATTGATGCAATAGTGTCGCAAGAAATGCTTTCCTTTCCACCATTTCTGATACAATCAATGTT
127 GACATTGATGCTTTAGTGTCGCAAGAAATGCTTT-CTTTCCACCATTTCTGATACAATCAAAGTT
* * * * *
1669349 TATCTTTTAAATCAAACAAACTTGAATGCTTGTACTATTCTCCATTCTTTTCAAGATTAGGTGCT
191 TATCTCTTAAATCAAACAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGG-GCT
* * * *
1669414 TTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCATTGGTTTCATAAGAAATGCTTTGT
255 TTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGTAAAAAAGGCTTT-T
* * * *
1669479 TCTCACCAATTTTTGTAAAGTGAAAATTCCTGCCTCAAATGAGCCAAATGTGGATTTTAGTTTTG
319 TCACACCAATTTTTGTAAAGT-AAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTG
* * * * *
1669544 ATCTTCTTTCACTTTGTGATTAAGCACTATAAAAACAATCTCTTCTTTAAAATTAATGACAGTGA
383 ATCTTCATTCACTTTGTGATTAAGCACTATAAAAACATTCTCCTCTTTAAGATTAATGACATTGA
* ** * * **
1669609 TGCTTTGGTGTT-AAAAGAAAAGC
448 TGATTTTCTTTTGCATTGAAAA-C
* * ** * * **
1669632 TTTTTTTCTGCCGT-TTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAT-GAATAG
1 TTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTTGTC-CTTAAATAAGACAAGAATCG-ATTC
* * * *
1669694 TCATACTAATCTCCATT-TTTTCGAA-ATTTGGCA-CTATAAATACAAT-CTTC-TGTAAGGATA
63 TCATAC-AATCTCCATTCTTTTC-AAGA-TTGGCATCAAAAAACACATTCCTTCAT-TAAGGATA
* * * * * *
1669754 CATGATATTGATGCTTTCGTTTCACAAGAAAGGCTTTCTTCCCACCA
124 CATGACATTGATGCTTTAGTGTCGCAAGAAATGCTTTCTTTCCACCA
1669801 AGTTTTGTAA
Statistics
Matches: 929, Mismatches: 153, Indels: 74
0.80 0.13 0.06
Matches are distributed among these distances:
471 1 0.00
472 19 0.02
473 268 0.29
474 331 0.36
475 167 0.18
476 136 0.15
477 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (470 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTCCTTAAATAAGACAAGAATCGATTCTCA
TACAATCTCCATTCTTTTCAAGATTGGCATCAAAAAACACATTCCTTCATTAAGGATACATGACA
TTGATGCTTTAGTGTCGCAAGAAATGCTTTCTTTCCACCATTTCTGATACAATCAAAGTTTATCT
CTTAAATCAAACAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGGCTTTAAAC
ATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGTAAAAAAGGCTTTTTCACACC
AATTTTTGTAAAGTAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCAT
TCACTTTGTGATTAAGCACTATAAAAACATTCTCCTCTTTAAGATTAATGACATTGATGATTTTC
TTTTGCATTGAAAAC
Found at i:1670390 original size:789 final size:788
Alignment explanation
Indices: 1668816--1670391 Score: 1993
Period size: 789 Copynumber: 2.0 Consensus size: 788
1668806 TACATGGCAT
** *
1668816 TGATGCTTTGGTGTCGGAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
1 TGATGCTTTGGTGTCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
*
1668881 CTTAAATAAGAAAAACATGAATACTCATACTATTCCCCATTCTTTCGAAGATTAGGCATCTTAAA
66 CTTAAATAAGAAAAACATGAATACTCATACTAATCCCCATTCTTTCGAAGATTAGGCATCTTAAA
*** * *
1668946 CATTGTCTTCTTATTAGGATACACGATATTAGTGCTTTGGTTTCGCAAAAAAGGCTTTCTTCACA
131 CACAATCTTCTTA-TAGGATACACGATATTAGTGCTTTCGTTTCACAAAAAAGGCTTTCTTCACA
** * **
1669011 CCAATTTTGTAAAGTCAAATTTGTACCTCAAATGAGCCAAACGTGAATTCTAGTTTTTTTCTTCA
195 CCAATTTTGTAAAGTCAAATGCGTACCTCAAATAAGCCAAACGTGAATTCTAGTTTTGATCTTCA
* * *
1669076 TTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATGACATTGATGATTTT
260 TTCATTTTGGGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGACAATGATGATTTT
* * * * * ** *
1669141 CTTTTGCATTGAATTATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTCCTTTAAATAAG
325 CTTTCGCATGGAAATATTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
1669206 CAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTAGTATCAAAAAACACCTTCCCTT
390 CAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTAGGATCAAAAAACACATTCCATT
** * *
1669271 CATTAAGATACATGACATTGATGCAATAGTGTCGCAAGAAATGCTTTCCTTTCCACCATTTCTGA
455 CATTAAGATACATGACAAAGATGCAATAGTGTCACAAGAAAAGCTTT-CTTTCCACCATTTCTGA
* * * * *
1669336 TACAATCAATGTTTATCTTTTAAATCAAACAAACTTGAATGCTTGTACTATTCTCCATTCTTTTC
519 TACAATCAAAGTTTATCTCTTAAATCAAACAAACATGAATGATTGTACTATTCTCCATTCCTTTC
*** * ** *
1669401 AAGATTAGGTGCTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCATTGGTTTCATA
584 AAGATTAGACACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCATTCATTTCACA
* * * * * ***
1669466 AGAAATGCTTTGTTCTCACCAATTTTTGTAAAGTGAAAATTCCTGCCTCAAATGAGCCAAATGTG
649 AGAAAAGATTTCTTCCCACCAATTTTTGTAAAGTCAAAATTCCTGCCTCAAATGAGCCAAACAAG
* * * * *
1669531 GATTTTAGTTTTGATCTTCTTTCACTTTGTGATTAAGCACTATAAAAACAATCTCTTCTTTAAAA
714 GATTCTAGTTTTGATCTTCATTCACTTTGTGATTAAGCACAATAAAAACAATCTCCTCATTAAAA
1669596 TTAATGACAG
779 TTAATGACAG
* **
1669606 TGATGCTTTGGTGTTAAAAGAAAAGCTTTT-TTTCTGCCGTTTTTGATAGAATCAAAGTTTGTCT
1 TGATGCTTTGGTGTCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * * *
1669670 CTTAAATAAGACAAAA-ATGAATAGTCATACTAATCTCCATTTTTTCGAA-ATTTGGCA-CTATA
66 CTTAAATAAGA-AAAACATGAATACTCATACTAATCCCCATTCTTTCGAAGATTAGGCATCT-TA
* * *
1669732 AATACAATCTTCTGTA-AGGATACATGATATT-GATGCTTTCGTTTCACAAGAAAGGCTTTCTTC
129 AACACAATCTTCT-TATAGGATACACGATATTAG-TGCTTTCGTTTCACAAAAAAGGCTTTCTTC
* * * *
1669795 CCACCAAGTTTTGTAAAGTCAAAGTGCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGAT
192 ACACCAA-TTTTGTAAAGTCAAA-TGCGTACCTCAAATAAGCCAAACGTGAATTCTAGTTTTGAT
** * * *
1669860 CTTCATTCATTTTGGGATTAGGTGCTATAAAAACATTCTCCTCATTAAGATTAATGATAATGGTG
255 CTTCATTCATTTTGGGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGACAATGATG
*
1669925 ATTTTCTTTCGCATGGAAATCTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
320 ATTTTCTTTCGCATGGAAATATTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * *
1669990 ATAAGACAAGCATCGATTCTCGTAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACAT
385 ATAAG-CAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTAGGATCAAAAAACACAT
** * ** * * * *
1670055 TTTATTCATTAGGATACATGACAAAGATGCTTTGGTGTCACAAGAAAAGCCTTT-TTTTCATCGT
449 TCCATTCATTAAGATACATGACAAAGATGCAATAGTGTCACAAGAAAAG-CTTTCTTTCCACCAT
* * * * *
1670119 TTGTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGGCAAACATGAAT-ATTCTTACTATTC-CTC
513 TTCTGATACAATCAAAGTTTATCTCTTAAATCAA-ACAAACATGAATGATT-GTACTATTCTC-C
* * *
1670181 TTTCCTTTCAGGATTAGACACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
575 ATTCCTTTCAAGATTAGACACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCATT
** * * *
1670246 CATTTTGCAAGAAAAGATTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAG
640 CATTTCACAAGAAAAGATTTCTTCCCACCAATTTTTGTAAAGTCAAAATTCCTGCCTCAAATGAG
* * *
1670311 CCAAACAAGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCC
705 CCAAACAAGGATTCTAGTTTTGATCTTCATTCACTTTGTGATTAAGCACAATAAAAACAATCTCC
*
1670376 TCATTAAGATTAATGA
770 TCATTAAAATTAATGA
1670392 TATTGATGAT
Statistics
Matches: 667, Mismatches: 108, Indels: 23
0.84 0.14 0.03
Matches are distributed among these distances:
786 1 0.00
787 49 0.07
788 38 0.06
789 455 0.68
790 120 0.18
791 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (788 bp):
TGATGCTTTGGTGTCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
CTTAAATAAGAAAAACATGAATACTCATACTAATCCCCATTCTTTCGAAGATTAGGCATCTTAAA
CACAATCTTCTTATAGGATACACGATATTAGTGCTTTCGTTTCACAAAAAAGGCTTTCTTCACAC
CAATTTTGTAAAGTCAAATGCGTACCTCAAATAAGCCAAACGTGAATTCTAGTTTTGATCTTCAT
TCATTTTGGGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGACAATGATGATTTTC
TTTCGCATGGAAATATTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGC
AAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTAGGATCAAAAAACACATTCCATTC
ATTAAGATACATGACAAAGATGCAATAGTGTCACAAGAAAAGCTTTCTTTCCACCATTTCTGATA
CAATCAAAGTTTATCTCTTAAATCAAACAAACATGAATGATTGTACTATTCTCCATTCCTTTCAA
GATTAGACACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCATTCATTTCACAAG
AAAAGATTTCTTCCCACCAATTTTTGTAAAGTCAAAATTCCTGCCTCAAATGAGCCAAACAAGGA
TTCTAGTTTTGATCTTCATTCACTTTGTGATTAAGCACAATAAAAACAATCTCCTCATTAAAATT
AATGACAG
Found at i:1670496 original size:475 final size:473
Alignment explanation
Indices: 1669599--1707273 Score: 17982
Period size: 475 Copynumber: 78.6 Consensus size: 473
1669589 TTTAAAATTA
* * *
1669599 ATGACAGTGATGCTTTGGTGTTAAAAGAAAAG-CTTTTTTTCTGCCGTTTTTGATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTC-ACCGTTTTTGATAGAATCAAAG
* * * * * *
1669663 TTTGTCTCTTAAATAAGACAAAAATGAATAGTCATACTAATCTCCATTT-TTTC-GAAATTTGGC
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACT-AT-TCCCTTTCTTTCAG-GATTAGGC
* * * * * * * **
1669726 ACTATAAATACAATCTTCT-GTAAGGATACATGATATTGATGCTTTCGTTTCACAAGAAAGGCTT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTT
* * * *
1669790 TCTTCCCACCAAGTTTTGTAAAGTCAAAGTGCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTT
192 TCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
* ** *
1669855 TTGATCTTCATTCATTTTGGGATTAGGTGCTATAAAAACATTCTCCTCATTAAGATTAATGATAA
257 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATAT
* * * *
1669920 TGGTGATTTTCTTTCGCATGGAAATCTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTCATCC
322 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* *
1669985 CTTAAATAAGACAAGCATCGATTCTCGTAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
387 CTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
*
1670050 CACATTTTATTCATTAGGATAC
452 CACATTCTATTCATTAGGATAC
** * *
1670072 ATGACAAAGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCATCGTTTGTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* *
1670137 TTGTCTCTTAAATAAGGCAAACATGAATATTCTTACTATTCCTCTTTCCTTTCAGGATTAGACAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-CTTT-CTTTCAGGATTAGGCAC
* * *
1670202 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTTTGCAAGAAAAGATTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* **
1670267 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACAAGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
*
1670332 GATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* * *
1670397 ATGATTTTCTTTTACGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* ** * * * * *
1670462 TCAATAAGACAAGTTTTGATTCTCACGACAATCTCCATTTTTTTCAAGATTGGGATCCATAAACA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
** *
1670527 CATTCCCTTCTTTAGGATAC
454 CATTCTATTCATTAGGATAC
* ** * * * * *
1670547 ATAACTTTGATGCGTTGGTGTCGCAA-AAAATGCATTTTTTTCCACCGATTTCGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAA-GCCTTTTTTT-CACCGTTTTTGATAGAATCAAA
* * * * *
1670611 GTTTGTC-CTTTAAATTAGACAAACATGAATACTT-GTACTATTCACCATTCTTTTCAAGATTAG
64 GTTTGTCTC-TTAAATAAGGCAAACATGAATA-TTCATACTATTC-CCTTTC-TTTCAGGATTAG
* * * * * *
1670674 GCACTATAAACATAGTCTTCTCATTAGGATACACGACATTGGTGCTTTGGTTTTGTAAGAAAGGT
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * *
1670739 TTTTTTCCCACCAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * *
1670803 ATTTGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * *
1670868 ATTCATGATTTTCTTTTCCATGGAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * *
1670933 CCCTTAAAAAAGACAAGCAACGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCTAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* **
1670998 AACACATTCTATTAATTACAATAC
450 AACACATTCTATTCATTAGGATAC
* * * ** * ** * *
1671022 AAGATAGTGATGCTTTGGTGTCAGAAGAAATTCTTTTTTTTTGCCATTTTTTATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* *
1671087 TTGTCTCTTAAGT-AGGACAAA-ATTGAATAGTT-ATACTAATCTCCATTT-TTTC-GAGATTAG
66 TTGTCTCTTAAATAAGG-CAAACA-TGAATA-TTCATACT-AT-TCCCTTTCTTTCAG-GATTAG
** *** * * * * *
1671147 GCACTACAAATGCAGTCTTCT-GTAAGGATACATGATATTGACGCTTTC-TTTTCACAAGAAAGG
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTT-GCAAGAAAGG
* * * * *
1671210 CTTTCTTCCCAACAAGTTTTGTAAAGTCAAAGTGCGTGCCTTAAATTAGCCAAACGTGGATTCTA
189 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* **
1671275 GTTTTGATCTTCATTCATTTTGGGATTAGGTGCTATAAAAACATTCTCCTCATTAAGATTAATGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* * * * * * **
1671340 TAATGGTGATTTTCTTTCGCATGGAAATGTTTTCTTTACCCTATTTTTCTTAAAATCAAAGCCCA
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
1671405 TCCCTTAAATAAGACAAGCATCGATTCTCGTAAGAATCTCCATTCTTTTCAAGATTAGGATCCAA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
1671470 AAACACATTCTATTCATTAGGATAC
449 AAACACATTCTATTCATTAGGATAC
** * * *
1671495 ATGGTAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTCATCGTTTGTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * *
1671560 TTGTCTCTTAAATAAGGCAAACACGAATACTCTTACTATTCCTCTTTCCTTTCAAGATTAGACAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-CTTT-CTTTCAGGATTAGGCAC
* *
1671625 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGATTTT
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * **
1671690 TTCCCACTAATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACAAGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
*
1671755 GATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* *
1671820 ATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* ** * * *
1671885 TCAATAAGACAAGTTTCGATTCTCACAACAATCTCTATTTTTTTCAAGATTGGGATCCAAAAACA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
*
1671950 CATTCCT-TTCTTTAGGATAC
454 CATT-CTATTCATTAGGATAC
** * * * *
1671970 ATGACTTTGATGCTTTGGTGTCGCAA-AAAATGTACTTTTTTCCACCGATTTTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAA-G-CCTTTTTTTCACCGTTTTTGATAGAATCAAA
* * * * * *
1672034 GTTTGTCCCTTAAATCAGACAAACATGAATACTT-GTACTATTCGCCATTCTTTTCAAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATTC-CCTTTC-TTTCAGGATTAGG
* * * * *
1672098 CACTGTAAACATAGTCTTCTCATTAGGATACACGACT-TTGGTGCTTTGGTTTTGCAAGAAATGT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGA-TATTGATGCTTTCGTTTTGCAAGAAAGGC
* * *
1672162 TTTTTTCCCACCAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * *
1672226 ATTTGATCATCATTCATTTTGTCG-TTAGGCACTATAAACACATTCTCCTCTTTAAGATTAATGA
255 TTTTGATCTTCATTCATTTTGT-GATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* * *
1672290 TATTCATGATTTTCTTTTGCATGGAAATCTTTTCGTTACCCTATTTTCCTTAAAATCAAAGTTCA
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
1672355 TCCCTTAAATAAGACAAGCATCGATCCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCTA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* **
1672420 AAACACATTCTATTAATTACAATAC
449 AAACACATTCTATTCATTAGGATAC
* * * ** * ** * *
1672445 AAGATAGTGATGCTTTGGTGTCAGAAGAAATTCTTTTTTTTTGCCATTTTTTATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * *
1672510 TTGTCTCTTAAGTTAGGCAAA-ATTGAATAGTT-ATACTAATCTCCATTT-TTTC-GAGATTAGG
66 TTGTCTCTTAAATAAGGCAAACA-TGAATA-TTCATACT-AT-TCCCTTTCTTTCAG-GATTAGG
** *** * * * * * *
1672571 CACTACAAATGCAGTCTTC-CGTAAGGATACATGATACTGACGCTTTC-TTTTCACAAGAAAGGC
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTT-GCAAGAAAGGC
* * * * *
1672634 TTTCTTCCCAACAAGTTTTGTAAAGTCAAAGTGCGTGCCTTAAATAAGCCAAACGTGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* ** *
1672699 TTTT-ATCTTCATTCATTTTGGGATTAGGTGCTATAAAAACATTCTCCTTATTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * * * **
1672763 AATGGTGATTTTCTTTCGCATGGAAATGTTTTCTTTACCCTATTTTTCTTAAAATCAAAGCCCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* *
1672828 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
1672893 AACACATTCTATTCATTAGGATAC
450 AACACATTCTATTCATTAGGATAC
** * * * *
1672917 ATGGTAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTCATCGTTTGTGATAGAATCAAAGG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * *
1672982 TTGTCTCTTAAATAAGGCAAACACGAATACTCTTACTATTCCTCTTTCCTTTCAAGATTAGACAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-CTTT-CTTTCAGGATTAGGCAC
* * *
1673047 TTTAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTCGTTTTGCAAGAAAGGATTTT
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* **
1673112 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACAAGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* *
1673177 GATCTTCATTCATTCTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* *
1673242 ATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* ** * *
1673307 TCAATAAGACAAGTTTCGATTCTCACAACAATCTCCATTTTTTTCAAGATTGGGATCCAAAAACA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* *
1673372 CAATCCT-TTCTTTAGGATAC
454 C-ATTCTATTCATTAGGATAC
** * * * *
1673392 ATGACTTTGATGCTTTGGTGTCGCAA-AAAATGCACTTTTTTCCACCGATTTCGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAA-GC-CTTTTTTTCACCGTTTTTGATAGAATCAAA
* * * * * *
1673456 GTTTGTCCCTTAAATCAGACAAACATGAATACTT-GTACTATTCGCCATTCTTTTCAAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATTC-CCTTTC-TTTCAGGATTAGG
* * * *
1673520 CACTGTAAACATAGTCTTCTCATTAGGATACACGACT-TTGGTGCTTTGGTTTTGCAAGAAAGGT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGA-TATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * * *
1673584 TTTTTTCCCACCAATTTTTGT-AAGTGAAAATTCGTGTCTCAAATAAGCCAAACGTGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * *
1673648 ATTTGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCTCCTCTTTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * *
1673713 ATTCATGATTTTCTTTTGCATGGAAATCTTTTCGTTGCCCTATTTTCCTTAAAATAAAAGTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* **
1673778 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCTGA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* *
1673843 AACACATTCTATTAATTAGGATAT
450 AACACATTCTATTCATTAGGATAC
* * * ** * ** *
1673867 AAGACAATGATGCTTTGGTGTCGCAAG-AAATTCTTTTTCTTCGCTATTCTTGATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTT-TTCACCGTTTTTGATAGAATCAAAG
* * *
1673931 TTTGTCTCTTAAGT-AGGACAAA-ATTGAATAGTCATACTAATCTCCATTT-TTTC-GAGATTAG
65 TTTGTCTCTTAAATAAGG-CAAACA-TGAATATTCATACT-AT-TCCCTTTCTTTCAG-GATTAG
* * *
1673992 GCA--TTACAA-ATGCAGTCTTCT-GTAAGGATACATGATATTGATGCTTTC-TTTT-CATAAGA
125 GCACTTTA-AACAT--AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGC--AAGA
* *
1674051 AAGGCTTTCTTCCCACCAATATTTGTAAAGTCAAAGTTCGTGCCTTC-AATAAGCCAAACGTGGA
185 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCC-TCAAATGAGCCAAACGTGGA
* * * *
1674115 TTCTAGTTTTGACCTTCATTCATTTTGGGATTAGGCACTATAAAAACATTCTCCTCATTATGAGT
249 TTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATT
* ** * * * * *
1674180 AATGATAATGGGGATTTTCTTTCGCATGGAAATGTTTTCTTTACCCTATTTTTCTTCAAATCAAA
314 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * *
1674245 GTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCACTCATTTCAAGATTAGGA
379 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGA
1674310 TCCAAAAACACATTCTATTCATTAGGATAC
444 TCCAAAAACACATTCTATTCATTAGGATAC
* * *
1674340 ATGGCAGTGATGCTTTGGTGTCACAAGAAAAG-CTTTTTTTCATCGTTTGTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * **
1674404 TTGTCTCTTAAATAAGGCAAACATGAATACTCTTACTATTCCTCTTTCCTTTCAGGATTAGATAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-CTTT-CTTTCAGGATTAGGCAC
* *
1674469 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTTGTTTTGCAAGAAAGGATTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
** * * **
1674534 AACCCACCAATTTTTGTAAAGTCAAAGCTCGTGCCTCAATTGAGCCAAACAAGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* *
1674599 GATCTTCATTCATTTTTTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* ** *
1674664 ATGATTTTCTTTTGCGTTAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
1674729 TCAGTAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTGAAAATTGGGATCCAAAAACA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* ** *
1674794 CAATCCCTTCTTTAGGATAC
454 CATTCTATTCATTAGGATAC
** * * * * *
1674814 ATGACTTTGATGCTTTGGTGTCCCAA-AAAATGCATTTCTTTCAACCGATTTCGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAA-GCCTTTTTTTC-ACCGTTTTTGATAGAATCAAA
* * * * * * *
1674878 GTTTGTC-CTTTAACTCAGACAAACATGAATACTT-GTACTATACGCCATTCTTTTCAAGATTAG
64 GTTTGTCTC-TTAAATAAGGCAAACATGAATA-TTCATACTATTC-CCTTTC-TTTCAGGATTAG
* * * * *
1674941 GCACTTTAAGCATAGTCTTCTCAGTAGGATACACAATATTGGTGCTTTGGGTTTTGCAAGAAAGG
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-CGTTTTGCAAGAAAGG
* * * **
1675006 TTTTCTTCCCACCAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCAAACAAGGATTCTA
189 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * *
1675070 GATTTCATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCCCTTTAAGATTAATGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* * *
1675135 TATTAATGATTTTCTTTTGCGTGGAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCA
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * * * * ***
1675200 TCCCTTAAATAAGGCAAACACCGATTCGCACAATAATCTCCATTCTCTTCAAGATTGGGATCTTG
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
*
1675265 AAACACATTCTATTAATTAGGATAC
449 AAACACATTCTATTCATTAGGATAC
* * * * ** *
1675290 AAGACAGTGATGCTTTGGTGTCGCAAGAAAATCTTTTTTTTTGCCATTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * * * *
1675355 TTGTCTCTTAAGT-TGGACAAAAATGAATAGTCATACTAATCTCCTTTTTTTCGGGATTAGGCAC
66 TTGTCTCTTAAATAAGG-CAAACATGAATATTCATACTATTC-CCTTTCTTTCAGGATTAGGCAC
* *** * * * * * * **
1675419 TATAAATGCAGTCTTCT-GTAAGGATACATGATATTAATCCTTTCATTTCACAAGAAAGGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * * *
1675483 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTC-ATTAAGCCAAACGTGGACTCTAGTCT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCC-TCAAATGAGCCAAACGTGGATTCTAGT-T
* ** * * * ** *** ** * * *
1675547 TCTCAT-TAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGATTTATTCCCACCAATTT
257 T-TGATCT-TCAT--TC-ATTTTG-TGATTAGGCACTATAA-AAA-CA-TT-CT-CC-TC-A-TT
** * * * * * ** * * *
1675611 TTG-TAAAGTCAAAGTTCATG--TCTCAATTGAGCCAAACATGG-ATTCTAGTTT-TGATCTTCA
308 AAGATTAA-TGATA-TTGATGATTTTC--TTTTG-----CATGGAAATCT--TTTCT--T-TGCC
* ** ** * * * ** *
1675671 TTCATTTTGTGATTAGGCACAAT-AAA-AACATTCTCC-TCATTAAGATTAATTATATTGATGAT
359 CT-A-TTT-TCCTTA---A-AATCAAAGTTCA-TC-CCTTAAATAAGA-CAA--GCA-T--CGA-
** * * * *** *** ** * * * *
1675733 TTTCTTTTGCGTTA-AATCT--TTTCCTTACCCTATT-TTCTTTAAAATCAAAGTTC-ATCCCTT
408 -TTC---T-CGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACA-TTCTATTCATT
1675793 CA--ATA-
467 -AGGATAC
* ** * * * *** * * * ** * *
1675798 A-GACAAG-CAT-CAAT--TCTCGCAACAATCTCCATTATTTTCA-AGATTGGGATCCAAAAACA
1 ATGAC-AGTGATGCTTTGGTGTCACAAGAAAAGCC-TTTTTTTCACCGTTTTTGAT--AGAATCA
* * * **** ** * ** * * *
1675857 CA-TTCCCT-TCT-TTAGGATACATGACTTTGATGCTTTGGTGTCGCA-AAAAATACATTTCTTT
62 AAGTT---TGTCTCTTA-AATA-A-GGCAAACATG-AAT-AT-T--CATACTATTCCCTTTCTTT
* ** ** * * * * * * * * *
1675918 CCATCGATTTCG-A-TAGAATCAAAGTTTGTCCCTTAAATCAGACAAACATGAATACTTG-TACT
116 -CA-GGATTAGGCACTTTAAACATAGTCT-T--C-T-CATTAG-GATACACG-ATA-TTGATGCT
* * * ** ** ** ** * *
1675980 ATTCGCCATTCTTTTCAAGATTAGGCACTTTAAATATTGTCTTCTCTTTAGGATACACGATATAA
171 -TTCG----T-TTTGCAAGA-AAGG--C-TT---TCTTCCCACCAATTTTTG-TA-AAG-T-CAA
* *** *** * ** * ** ** *
1676045 GAGCTTTGGTTTTGCAAGAAAGGTTTTTTTCC-CAC--CAATTCTGGTAAGTGAAAATTCGTGCC
219 -AG--TTCG---TGCCTCAAA-----TGAGCCAAACGTGGATTCTAGT-TTTG-ATCTTCAT---
** * * * * * **** * ** *
1676107 TCA-AATGAGCCA-AACGTGGATTCTAGATTTGA-TCTTCATTCATTTTGTGATT-AGGCACTAT
268 TCATTTTGTG--ATTA-G-GCACTATA-AAAACATTC-TC-CTCA--TTAAGATTAATG-A-TAT
** ** * * * ** * * * * * **
1676168 AAAACATTCTCCTCTTTAAG-ATTAGTGATAT-TAATGATTT--TCT-TTTGCATGGAAATTTTT
322 TGATGATT-TTCT-TTT--GCA-T-G-GAAATCT-TTTCTTTGCCCTATTTTCCT-TAAA-ATCA
** * ** * ** * * *
1676228 TCGTTGCCCTATTTTCCTTAAAATCAA-AC-CTCATCCCATAAAT--AAGACAAGCATCGATTCT
377 AAGTT---C-A--TCCCTT-AAAT-AAGACAAGCAT-CGAT-TCTCGCA-ACAATC-TCCATTC-
* *
1676289 CTTAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAAACACATTCTATTAATTAGGATAC
429 -----------------TTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* * * * ** * *
1676351 AAGACAGTGACGCTTTGGTGTCGCAAGAAAA-TCTTTTTTTTGCCATTTTTGATAGAATCAAAGA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * * * *
1676415 TTGTCTCTTAAGT-TGGACAAAAATGAATAGTCATACTAATCTCCTTTTTTTCAAGATTAGGCAC
66 TTGTCTCTTAAATAAGG-CAAACATGAATATTCATACTATTC-CCTTTCTTTCAGGATTAGGCAC
* ** * * * * * **
1676479 TATAAATGTAGTCTTCT-ATAAGGATACATGATATTAATCCTTTCATTTCACAAGAAAGGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* *
1676543 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTC-AATAAGCCAAACGTGGATTCTAGTCT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCC-TCAAATGAGCCAAACGTGGATTCTAGT-T
* ** * * * ** *** ** * * *
1676607 TCTCAT-TAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGATTTATTCCCACCAATTT
257 T-TGATCT-TCAT--TC-ATTTTG-TGATTAGGCACTATAA-AAA-CA-TT-CT-CC-TC-A-TT
** * * * * ** * * **
1676671 TTG-TAAAGTCAAAGTTCG-TG--TCTCAATTG-A-GCCAAACACGGATTCTAGT-TTTGATCTT
308 AAGATTAA-TGATA-TT-GATGATTTTCTTTTGCATG-GAAA-TC---TT-T--TCTTTG--CCC
* ** * * * ** *
1676729 TATTCATTCTGTGATTAGGCACAAT-AAA-AACATTCTCC-TCATTAAGATTAATTATATTGATG
360 TATT--TTC----CTTA---A-AATCAAAGTTCA-TC-CCTTAAATAAGA-CAA--GCA-T--CG
* * * * *** *** ** * * *
1676791 ATTTTCTTTTGCGTTAA-AATCT--TTTCCTTACCCTATT-TTCTTTAAAATCAAAGTTCAATTC
407 A--TTC---T-CG-CAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACA-TTCTATTC
1676852 -TTCA--ATA-
464 ATT-AGGATAC
* ** * * * *** * * * ** * *
1676859 A-GACAAG-CAT-CAAT--TCTCGCAACAATCTCCATTATTTTCA-AGATTGGGATCCAAAAACA
1 ATGAC-AGTGATGCTTTGGTGTCACAAGAAAAGCC-TTTTTTTCACCGTTTTTGAT--AGAATCA
* * * * **** * * ** * * *
1676918 CA--TTCTCTTCTTTAGGATACATGACTTTGATG-CTTTGGTGGGGCA-AAAAATGCATTTCTTT
62 AAGTTTGTC-TC-TTA-AATA-A-GGCAAACATGAATAT--T----CATACTATTCCCTTTCTTT
* * * ** * * * * * * *** ** * *
1676979 CCACCGATT--TCAATAGAATCAAAGT-TTGTCCCTTA-AAT-CA-GAAAAACATGAATAC-TTG
116 -CA-GGATTAGGCACTTTAAACATAGTCTTCT-CATTAGGATACACGATATTGATGCTTTCGTTT
* * *** * * ** * ** ** * * ** * * *
1677037 TACTA-CTCGCCATTCTTTTCA--AGA--TTAGGCACTTTAAACATT-GTTTTCTC--TTTAG-G
178 TGCAAGAAAGGCTTTCTTCCCACCA-ATTTTTGTAAAGTCAAA-GTTCG-TGCCTCAAATGAGCC
** * * *** * **** * * *
1677093 ATACACGAT--ATTGGAGTTTTGGTTTTGCAGGAAAGGTTTTTTTCCCA-CCAATTTTGGTAAGT
240 A-A-ACG-TGGATTCTAGTTTTGATCTT-CA-TTCA--TTTTGTGATTAGGC-A--CT-ATAA--
**
1677155 GAAA-ATTCGTGCCTCA--AACGAGCCAAACGTGGAT-TCTAGATTTGATCTTCATTCATTTTGT
292 -AAACATTC-T-CCTCATTAA-GA--TTAA--T-GATAT-T-GA--TGA--TT--TTC-TTTTG-
* * * * *** * * *** * * * ** **
1677216 GATTAGGCACTATAAAACATT-CTCCTCTTTAAGATTAATGATATTAATGATT-TTCTTTTGCAT
338 CA-T-GGAAATCT-TTTCTTTGC-CCTATTT-TCCTTAA--A-ATCAAAG-TTCATCCCTTAAAT
*** * * ** ***
1677279 GGAA-ATCTTTTCATTGCCCTATTTTC-CTTAAAATCAAACCTCATCCCATAAATAAGACAAGCA
394 --AAGA-C-AAGCA-T---CGATTCTCGC----AA-C-AA--TC-T-CCAT-TCT-TTTCAAG-A
* * * * * * *
1677342 -T-CGATTCTTGTAACAATCTTCATTCTTTTCAAGATTGGGATCCTAA
438 TTGGGA-TC---CAA-AAAC-ACATTCTATTC---ATTAGGA---TAC
** * * ** * * * *
1677388 AACACATTCTATTAATTAGGATACAAGACTGAGATGCTTTGGGGTCGCAAGAAAATCTTTTTTTT
1 ATGACAGT-GA-TGCTTTGG-T---------------------GTCACAAGAAAAGCCTTTTTTT
** * * * * * *
1677453 TGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAGT-TGGACAAAAATGAATAGTCATACTAAT
42 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGG-CAAACATGAATATTCATACTATT
* * *** * *
1677517 CCTCATTT-TTTCGGGATTAGGCACTATAAATGCAGTCTTCT--GTATGGATACATGATATTGAT
106 CC-C-TTTCTTTCAGGATTAGGCACTTTAAACATAGTCTTCTCATTA-GGATACACGATATTGAT
* ** * *
1677579 GCTTTCATTTCACAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAATTCAAAGTTCGTGCCTTC-
168 GCTTTCGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCC-TCA
* * * * *
1677643 AATAAACCAAACGAGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCGCTATAAAAACA
232 AATGAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACA
* * * * *
1677708 TTCTCCTCATTAAGATTAATGATAATGGTGATTTTCTTTCGCATGGAAATCTTTTCTTTACCGTA
297 TTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * * *
1677773 TTTTTCTTAAAATCCAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTATCAATCTCTAT
362 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCAT
* *
1677838 TCTGTTCAAGATTGGGATCCAAAGACACATTCTATTTTCATTAGGATAC
427 TCTTTTCAAGATTGGGATCCAAAAACACATTCTA--TTCATTAGGATAC
* * *
1677887 ATCG-CAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTCATCGTTTGTGATAGAATCAAAG
1 AT-GACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAG
* * * * *
1677951 TTTGTCTCTTAAATAAGACAAACATGAATACTCTTACTATTCCTCTTTTCTTTCAAGATTAGACA
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-C-TTTCTTTCAGGATTAGGCA
* * * ** *
1678016 CTTTGAACATAGTCTTCTTC-TTAGAATACACGATATTGATGCTATCGTTTCACAAGAAAGGATT
128 CTTTAAACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTT
* * *
1678080 TCTTCCCACCAATTTTTTTAAAGTCAAAGTTCATGCCTC-AATCGAGCCAAACATGGATTCTAGT
192 TCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAAT-GAGCCAAACGTGGATTCTAGT
* * **
1678144 TTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAACAATA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA
* * * * *
1678209 TTGATGATTTTCTTTTACGTTGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATCAAAGTTCATC
321 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * *
1678274 CCTTTAATAGGACAAGCATCAATTCTCGCAACAATCTCTATTCTTTTCAAGATTGGGATCCAAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * * * *
1678339 ATA-TTTTTCCTTCACTAGGATAC
451 ACACATTCT-ATTCATTAGGATAC
* ** * * * * *
1678362 ATCACTTTGATGCTTTGGTGTCGCAA-AAAATGCATTTCTTTCGACCGATTTCGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAA-GCCTTTTTTTC-ACCGTTTTTGATAGAATCAAA
* * * * * ***
1678426 GTTTGTCCCTTAAATTAGACAAACATGAATGCTT-TTACTATTTGTTATTCTTTTCCA-GATTAG
64 GTTTGTCTCTTAAATAAGGCAAACATGAAT-ATTCATACTATTCCCT-TTC-TTT-CAGGATTAG
* * * *
1678489 GCACTTTAAACATAGTCTTCTCTTTAGGATACACGATATT-AGTGCTTTGGTTTTGCAGGGAAGG
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTTGCAAGAAAGG
* * ** * * * * *
1678553 TTTTATTCCTGCCAATTTTTGT-AAGTGAAAATTCGTGCTTCAAATGAGCCTAACGTGGATTATA
189 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * * * ** *
1678617 ATTTTTATCTTGATTTA-TTTGTGAGTAGGCACTATAAAAACATTCTCCTTTTTAAGATTAGTGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* * *
1678681 TATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTGTTTTCCTTAAAATCAAAGTTCA
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* *** * *
1678746 TCCCATAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGATCCTA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* *
1678811 AAACACATTCTACTAATTAGGATAC
449 AAACACATTCTATTCATTAGGATAC
* * * *
1678836 ATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCATCATTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * * *
1678901 TTGTCTCTTAAATAAGACAAAAATGAATAGTCATACTAATCTCCATTTTTTTCGGGATTAGGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACT-AT-TCCCTTTCTTTCAGGATTAGGCAC
** * * * * ***
1678966 CATAAATATAGTCTTCT-ATAAGGATACATGATATTGAAGCTTTCGTTTCAAAAGAAAGGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* *
1679030 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTAAAATAAGCCAAACGTGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* *
1679095 GATCTTCATTCATTTTGGGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAACGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* * *
1679160 GTGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *** *
1679225 TAAATAAGACAAGTATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAAACA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* *
1679290 CATTCTACTAATTAGGATAC
454 CATTCTATTCATTAGGATAC
* * * *
1679310 ATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCATCATTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * * *
1679375 TTGTCTCTTAAATAAGACAAAAATGAATAGTCATACTAATCTCCATTTTTTTCGGGATTAGGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACT-AT-TCCCTTTCTTTCAGGATTAGGCAC
** * * * * **
1679440 CATAAATATAGTCTTCT-ATAAGGATACATGATATTGAAGCTTTCGTTTCACAAGAAAGGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * *
1679504 TTCCCACCAATTTTTGTAAAGTCAAAGTTTGTGCCTAAAATAAGCCAAACGTGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* * * * *
1679569 GATCTTCATTCATTTTGGGATTAGGCACTATAAAAACATTCTCCACTTTAAGATTAACGACATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* * *
1679634 GTGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
1679699 TAAATAAGACAAGCATCGATTCTTGAAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAACA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
*
1679764 CATTCTATTCATCAGGATAC
454 CATTCTATTCATTAGGATAC
* * * * * * *
1679784 ATGAGAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATCGTTTTTGATAAAATCAATG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
** * * * * *
1679849 TTCATCTCTTAAACAAGACAAACATGAATACTCTTACTATTCCTCATTCCTTTCAGGATTAGGCA
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-C-TTTCTTTCAGGATTAGGCA
* * * * * * *
1679914 CTTTAAACACAGTCTTCTCGTAAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGGATTA
128 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTT
* * * *
1679979 CTTCCCACCAATTTTTGTGAAGTCAAAATTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTT
193 CTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTT
* * * ** *
1680044 TGGTCTTCATTCATTTTGTGATTATGTAGAATAAAAACATTCTCCTCATTAAGATTAATGACATT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATT
* * * *
1680109 GATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATGAAAGTTCATCTC
323 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-C
* * *
1680174 C-TAAATAAGATAAGAATCGGTTCTCGCAACAATCTCCA--CTATTTCAAGATTGGGATCCAAAA
387 CTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCT-TTTCAAGATTGGGATCCAAAA
1680236 ACACATTCCT-TTCATTAGGATAC
451 ACACATT-CTATTCATTAGGATAC
** * * ** * *
1680259 ATGACTTTGATGCTTTGGTGTCGCAA-AAATGTATTTCTTTCCACCGATTTTGATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT-TTTTCACCGTTTTTGATAGAATCAAAG
* * * * * *
1680323 TTTGTCCCTTAAATCAGACAAACATGAATACTT--TCACTATTTGCCATTCTTTTCAAGATTAGG
65 TTTGTCTCTTAAATAAGGCAAACATGAATA-TTCAT-ACTA-TTCCCTTTC-TTTCAGGATTAGG
* * * *
1680386 CACTTTAAACATAGTCTTATCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAAAGG-T
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * * * *
1680450 GTTTTTCCCACCAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCGAATGTGGATTCTAG
191 -TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* ** * * *
1680514 ATTTGATCTTCGCTCTTTTTGTGATTAGGCACTATAAAAACATTCTTCTCTTTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * **
1680579 ATTAATGATTTTCTTTCGCACGAAAATCTTTTAATTGCCCTATTTTCCTTAAAATCAAAGTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
** * *
1680644 CCC-TAGAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGATCCTA
385 CCCTTA-AATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* *
1680708 AAACACATTCTATTAATTACGATAC
449 AAACACATTCTATTCATTAGGATAC
* * * ** * * *
1680733 AAGACAGTGATGCATTGGTGTCGCAAGAAAAGTTTTTTTTTCACCATTTTTGGTAGATTCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* ** * * * *
1680798 TTGTCTCTTAAAAAAAAC-AACAATGAATAGTCATACTAATCTCCATTCTTTCGGGATTAGGCAC
66 TTGTCTCTTAAATAAGGCAAAC-ATGAATATTCATACTATTC-CCTTTCTTTCAGGATTAGGCAC
* *** * * * **
1680862 TATAAATGCAGTCTTCT-GTAAGGATACATGATATTGATGCTTTCGTTTCACAAGAAAGGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * * *
1680926 TTCCCACCAATTATTGTAAAGTCAAAGTTCGCGCCTTAAATAAGCCAAACGTGGATTCTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* * * *
1680991 GATCTTCATTCATTTTGGGATTAGGCGCTATAAAAACATTTTCCTCATTAAGATTAATGATAATG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* ** * *
1681056 GTGATTTTCTTTCACATTGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
*
1681121 TAAATAAGACAAGCATCAATTCTC-CTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
389 TAAATAAGACAAGCATCGATTCTCGC-AACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
*
1681185 ACATTCTATTCATTAGGATCC
453 ACATTCTATTCATTAGGATAC
* * * *
1681206 ATGGCAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTCATCGTTTATGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * *
1681271 TTGTCTCTTAAATAAGACAAACATGAATACTT-TTCCTATTCCTCATTCCTTTCAGGATTAGGCA
66 TTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATTCC-C-TTTCTTTCAGGATTAGGCA
* * * * * *
1681335 ATTTAAACATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTC
128 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTT
* * * * * *
1681400 CTTCCCGCCAATTTTTGTAAAGTCAAAGTTCGTGCTTCAATTAAGCCAAACATGGATTCTAGATT
193 CTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTT
* * *
1681465 TGGTCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGACATT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATT
* * * *
1681530 GATGACTTTCTTTTGCGTTTGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAGTTCATCC
323 GATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * *
1681595 CTTAAAAAAGACAAGGATCTG-TTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCCAAAA
387 CTTAAATAAGACAAGCATC-GATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * ** *
1681659 ACTCTTTCCCTTCATTCGGATAC
451 ACACATTCTATTCATTAGGATAC
** * ** * * * *
1681682 ATGACTTTGATGATTTGGTGTCGTAA-AAAATGCATTTCTTTCCACCGATTTCGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAA-GCCTTT-TTTTCACCGTTTTTGATAGAATCAAA
* * * * * * * *
1681746 GTTTGTCCCTTAATTCAGACAAACATGAATACTT-GTACCATTCGCCATTCTTTTCAAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATTC-CCTTTC-TTTCAGGATTAGG
* * * * *
1681810 CACTTTAAAAATAGTTTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTTGCAAGAAAGGTT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * * *
1681875 TTTTTCCCACCAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGA
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * * *
1681939 TTTGATCTTAATTCATTTTGTCATTAGGCACTATAAACACATTCTCCTCCTTAAGATTAATGATA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA
* * * *
1682004 TTAATGATTTTCTTTTGCTTGAAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
321 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* ** *
1682069 CATTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
*
1682134 ACACATTCTATTAATTAGGATAC
451 ACACATTCTATTCATTAGGATAC
* * * *
1682157 ATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCGCCATTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* ** * *
1682222 TTATCTCTTAAATAAGATAAACATGAATAGTCATACTAATCTCCATTT-TTTCAGGATTAGGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACT-AT-TCCCTTTCTTTCAGGATTAGGCAC
** ** * * * * ***
1682286 CATAAATGTAGTCTTCTCGTAAGGATACACAATATTGATGCTTTTGTTTCATAAGAAAGGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * * * * *
1682351 CTCCTACCAATTTTTGTAAAGTCAAAGTCCGTGCC-CTAAGTAAGCCAAATGTGG-TATCTAGTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTC-AAATGAGCCAAACGTGGAT-TCTAGTT
* *
1682414 TTGATCTTCATTCTTTTTGTGATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATAT
257 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATAT
* * *
1682479 TGGTGAATTTT-TTTTGCATGGAAATATTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATC
322 TGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * * *
1682543 GCTTAAATAAGACAAACATCGATTCTTGTAACAATCTCCATCCTTTCCAAGATTGGGATCTAAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* *
1682608 ACACATTCTATTCAATAGAATAC
451 ACACATTCTATTCATTAGGATAC
* * *
1682631 ATGACAGTGATGCTTTGGTGTCCCAAGAAAAG-CTTTTTTTCCACCGCTTTTGACAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * *
1682695 TTTGTCTCTTAAACAAGACAAACATGAATACTT-ATACTATTCCCCTATCTTTTCAAGATTAGGC
65 TTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATTAGGC
* * * * *
1682759 ACTTTAAACATAGTCTTCTCACTATGATACACGATATTGATGCTTTAGTTTCGTAAGAAAGGCTT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTT
* * ** * * *** *
1682824 TTTTCTCAAGAAATTTTTGTAAAGTCAAAGTTCGTACCCCAAGCAAGCCAAATGTGGATTCTAGT
192 TCTTC-CCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * * * * *
1682889 TTTGATATTCATTCCTTTTGTGATTACGCACAATAAAAACATTCTTCCTCAATAAGATTAATGAA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC-TCCTCATTAAGATTAATGAT
* * *
1682954 ATTGGTGATTTTCTTTCGCATGGAAATATTTTCTTT-CCCTATTTTCCTTAAAATCAAAGTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * *
1683018 CCCTTAAATAAGACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* *
1683083 AGCACATTCTATTAATTAGGATAC
450 AACACATTCTATTCATTAGGATAC
* * * * *
1683107 ATGACAGTGATGCTTTGGTATCGCAAGAAAAG--TTTTTTTCTATCGTTTTTTATACAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTC-ACCGTTTTTGATAGAATCAAAG
* * * *
1683170 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATATCCATTT-TTTCGGGATTAGGCA
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACT-AT-TCCCTTTCTTTCAGGATTAGGCA
** ** * * *
1683234 CCATAATTATAGTCTTCT-ATAAGGATACATGATATTGATACTTTC-TTTT-CATAAGAAAGGCT
128 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGC--AAGAAAGGCT
* * * * *
1683296 TTCTTCCCACCAATTTTTGTAAAGTAAAAGTTCATGCCTTAAATTAGCCAAACGTGGATTTTAGT
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* *
1683361 TTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATG-TA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA
* *
1683425 TTGATGATTTACTTTT--ATAGTGAAAT-TTTT-TTTGCCTCT-TTTTCCTTAAAATCAAAGTTT
321 TTGATGATTTTCTTTTGCAT-G-GAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTC
** * * * *
1683485 ATCCCTTAAATAAGATGACCATCGATTCTCGTAACAAACTCCATTCTTTTCAAGATTGGCATCCA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
*
1683550 AAAACACATTCTATTCTTTACGG-TAC
448 AAAACACATTCTATTCATTA-GGATAC
* *
1683576 ATGACAGTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTTTTCCATCGTTTTTGATA-AAGTCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAA-TCAAA
* * * * * *
1683639 GTTTG-CTCTTAAATAAGGCAAACATGAATAGTCATGCTAATCTCCTTTTTTTCAGGACTAGGAA
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTC-CCTTTCTTTCAGGATTAGGCA
** ** * * * * * * *** *
1683703 CCATAAATGTAGTCTTCTCGTAAGGATACACGACAGTGATGCTTTGGTGTCATAAGAAAAGCTTT
128 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTT
* * * * * * * * * *
1683768 TTTTCCATC-GTATTTGATAAAATCAAAGCTT-GT-CTCTTAAATGAGACAAACATGAATACTCC
193 CTTCCCACCAATTTTTG-TAAAGTCAAAG-TTCGTGC-CTCAAATGAGCCAAACGTGGAT--T-C
* * * * ** * ** * ** * *
1683830 TACTATT--CCAT-ATTC-TTTTCAAGATTAGGCACTTTAAGCATAGGCTTCTC-GTAAGGA-TA
252 TAGTTTTGATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAA-GATTA
* * * * * *** ** * ** *
1683889 CACGATATTAATG-CTTTCATTTCGCA-AGAAAGGATTTCTTCCCACCAATTTT-GGTAAAGTCA
315 -ATGATATTGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCA
* ** * * * * * * * ***** * **
1683951 AAGTTCGTGTCTCAAATGAGCCAAACGT-GCATACTAGTTTTGATCTTCATTCATTTT-GTGATT
377 AAGTTCATCCCTTAAATAAGACAAGCATCG-ATTCTCGCAACAATCTCCATTC-TTTTCAAGATT
* * * * * *
1684014 -CGACACTCTAAAA-ACATTCTCTTCTTTAAGATTA-
440 GGGA-TC-CAAAAACACATTCTATTCATTAGGA-TAC
* * * ** * ** * * ** * *
1684048 ATGATATTGATGATTTTCTTTTGCACGAAAA-TCTTTTCTTTGC-CC-TATTTTCTTTAAAACCA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGT-TTTT-GATAGAATCA
** * * * * * * *
1684110 AAGTTCATCCCTTAAATAAGACAAGCATCGAAT-CTCATAAC-AATCTCCATTCTTTTCATGATT
62 AAGTTTGTCTCTTAAATAAGGCAAACAT-GAATATTCAT-ACTATTC-CCTTTC-TTTCAGGATT
* *** ** * * * * * * * * * *
1684173 -GGGATCCAAAAACGCATTCTAT-TCATTAGGATACATGACAGTGACGCGTTGGTGTCGCAACAA
123 AGGCA-CTTTAAACATAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAA
* * ** * * * * * * **
1684236 AAGCTTTTTTTTCACC-GTTTTTAATAGAA-TCAAAGTTTGT-CTCTTAAATTAGACAAAC-AAG
186 AGGCTTTCTTCCCACCAATTTTT-GTA-AAGTCAAAGTTCGTGC-CTCAAATGAGCCAAACGTGG
* * ** * ** * * * *
1684297 A--ATA-CTTACACTCTTCCCTAT-ACTTTTCAAGATTAGGCACTTTAAACAA-AGTCTTCTCAC
248 ATTCTAGTTTTGA-TCTT-CAT-TCA-TTTT-GTGATTAGGCACTATAAA-AACATTCTCCTCAT
* * * ** * * *
1684357 TAGGA-TATACGATATTGGT-CCTTTCGTTTCGCA-AGAAAGGC-TTT-TTT-CCCATGAAATTT
307 TAAGATTA-ATGATATTGATGATTTTC-TTTTGCATGGAAA-TCTTTTCTTTGCCC-T---ATTT
* * * * * * *** * ** * ***** *
1684416 T--TGTAAAGTGAAAATTCAT-GCTTCAAATGAGCCAAATGTGGATAGTAGTTTTGATCT-TATT
365 TCCT-TAAAATCAAAGTTCATCCCTT-AAATAAGACAAGCATCGATTCTCGCAACAATCTCCATT
* ** ** ** ** *
1684477 CATTTCGTGATTAGCCACTATAAAAACA-ATT-TCCTC-TTGAAGATTA-
428 CTTTTCAAGATT-GGGA-TCCAAAAACACATTCTATTCATT-AGGA-TAC
* * ** * ** * ** *
1684523 ATGATATTGATGACTTTCTTTTGCA-TTGAAAA--TTTTTCTTTGC-CC-TATTTTCCTTAAAAT
1 ATGACAGTGATG-CTTTGGTGT-CACAAGAAAAGCCTTTT-TTT-CACCGT-TTTT-GATAGAAT
** ** * * * * * * * * *
1684583 CAAAGTTCATCAT-TTAAATAAGATAAGCATTGATTCTCGCA-ACAATCTCCATTTTTTTTACGA
60 CAAAGTTTGTC-TCTTAAATAAGGCAAACA-TGAATAT-TCATACTAT-TCCCTTTCTTTCAGGA
* ** * * * * * * *
1684646 TTTGG-A-TCCAAA-ATCACATTTTATTCATTAGGATACACGATAATGATGC-TTCGGTGTCGTA
121 TTAGGCACTTTAAACAT-A-GTCTT-CTCATTAGGATACACGATATTGATGCTTTC-GTTTTGCA
* * * * * * ** * * * *
1684707 AGAAAAGCTTTTTTTCCATC-ATTTTTGATAGAA-TCAAGGTTTGTTTCTTAAATTAGACAAACA
182 AGAAAGGCTTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTGCCTCAAATGAGCCAAACG
* * ** * ** ** * * *
1684770 TGAATACTTA-TACT-ATTCTCCATTC-TTTTCAAGATTAGGTGCTTTAAACAA-AGTCTTCTCA
245 TGGATTC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAA-AACATTCTCCTCA
* * * * * ** * * *****
1684831 CTAGGA-TATACGATATTGGTG-CTTTCGTTTCCCA-AGAAAGGCTTTT-TTCCTAAGAAATTTT
306 TTAAGATTA-ATGATATTGATGATTTTC-TTTTGCATGGAAA-TCTTTTCTT--TGCCCTATTTT
*** * * * * * * * * **
1684892 --TGTAAGGCCAAAATTCGTGCCTCAAATGAGCCAA--AT-G----T-GCATACTAGTTTTGA-T
366 CCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCA-AC-AATCTCCATT
** * * * * * *
1684946 CTTCATTC-ATTTTGGCA-CTATAAAA-ATATTCTCTTCTTTAAGATTA-
428 CTT--TTCAAGATTGGGATCCA-AAAACACATTCTATTCATTAGGA-TAC
* * * * * * ** ** * *** * *
1684992 ACGATATTGATGATCTT-CTTTTGCTTGAAAA--CTTTTCTTTGC-CTTGTTTTCCTTAAAATGA
1 ATGACAGTGATGCT-TTGGTGTCACAAGAAAAGCCTTTT-TTT-CAC-CGTTTTTGATAGAATCA
* * * * * * ** * *
1685053 AATTTTATCCCTTAAATAAGACAAGCATCG-AT-TCTCACAAC-AAGCTCCATTCATTTCAAGAT
62 AAGTTTGTCTCTTAAATAAGGCAAACAT-GAATAT-TCA-TACTATTC-CCTTTC-TTTCAGGAT
* *** * * * * * * * *
1685115 T-GGGATCCAAAAACACATTCTGT-TCATCAGGATACATGACAGTGATGCTTTGGTTTCGCAAGA
122 TAGGCA-CTTTAAACATAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGA
* * ** ** * * * * * * *
1685178 AAAGCTTTTTTTTTCGTC-GTTTTTG-ATAGTATCAAAGTTGGT-CTCTTAAATCAGACAAACAT
185 AAGGC-TTTCTTCCCACCAATTTTTGTAAAG--TCAAAGTTCGTGC-CTCAAATGAGCCAAACGT
* * * ** ** * * * * *
1685240 GAATACTCGTACT-ATTCCCCATTCATTTCAG-GATTAGGCACTATAAACATAGTCTTCC-CGTT
246 GGATTCTAGTTTTGA-TCTTCATTCATTT-TGTGATTAGGCACTATAAAAACATTC-TCCTCATT
* * * ** ** * * * * ** *
1685302 AGGA-TACACGATATTGGTGCCTTGGTTTCGCA-AGAAAGGCTCTT-TTCCCACCAATTTT--TG
308 AAGATTA-ATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-
* * * * * * * * * ***** * **
1685362 TAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACAT-GAATTTTTAGTTTTGATCTTCATTAATT
369 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-A-TTCTCGCAACAATCTCCATTCTTT
* * * ** *
1685426 T-AGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGATTA-
432 TCA-AGATT-GGGATCCA-AAAACACATTCTATTCATTAGGA-TAC
* * * ** * ** * * * ** *
1685468 ATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CC-TATTTTCCTTAAAATCA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGT-TTTT-GATAGAATCA
** * * * * * * * * * * *
1685530 AAGTTCATCCCATAAATAAGACAAGCAACGATTCTT-GTAACAATT-CCATTCTTTTCATGATT-
62 AAGTTTGTCTCTTAAATAAGGCAAAC-ATGAATATTCAT-ACTATTCCCTTTC-TTTCAGGATTA
* * * * * * * * * * * *
1685592 GGGA-TTCAACAACACATTCCAT-TCATCAGGATACATGATAGTGATGCTTTGGTATCGTAAGAA
124 GGCACTT-TA-AACATAGT-CTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAA
* * ***** * * * * * *
1685655 AAGCTTTTTTTTTTTGTC-ATTTTTG-ATAGCATCAAAGTTGGT-CTCTTAAATCAGACAAACAT
186 AGGC--TTTCTTCCCACCAATTTTTGTAAAG--TCAAAGTTCGTGC-CTCAAATGAGCCAAACGT
* * * ** ** ** * * * * *
1685717 GAATACTCGTGCT-ATTCCCCATTC-TTTTCAAGATTAGGCACTTTAAACATAGTCTTCC-CGTT
246 GGATTCTAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTC-TCCTCATT
* * * ** ** * * * * ** *
1685779 AGGA-TACATGAAATTGGTGCGTTGGTTTCGCA-AGAAAGGCTCTT-TTCCCACCAATTTT--TG
308 AAGATTA-ATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-
* * * * * * * * * ** ** * * *
1685839 CAAAGTCAAAGTTCGA-GCCTCAAATGAGCCAAACAT-GAATTTTTAGTTATGATTTTCATTAAT
369 TAAAATCAAAGTTC-ATCCCTTAAATAAGACAAGCATCG-A-TTCTCGCAACAATCTCCATT-CT
** * * * ** *
1685902 TTT-GTGATTAGGCA-CTATAAAA-GCATTCTCCTCATTAAGATTA-
430 TTTCAAGATT-GGGATCCA-AAAACACATTCTATTCATTAGGA-TAC
* * * ** * ** * * ** *
1685945 ATGATATTGATGATTTTCTTTTGCATGAAAA-TCTTTTCTTTGC-CC-TATTTTCCTTAAAATCA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGT-TTTT-GATAGAATCA
** * * * * * * * * * * * *
1686007 AAGTTCATCCCTTCAATAAGACAAGCATCGATTCTT-GTAACAATCTCCATTTTTTTAATGATT-
62 AAGTTTGTCTCTTAAATAAGGCAAACAT-GAATATTCAT-ACTAT-TCCCTTTCTTTCAGGATTA
* *** * * * * * * * ** *
1686070 GGGATCCAAAAACACATTCTAT-TCATTAGGATACATGACAGTGATGCTTTGGTGTCACACGAAA
124 GGCA-CTTTAAACATAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAA
* * * * * * * * * * * * *
1686134 AGCTTTTTTTCCATC-GTTTTAGATAGAA-TGAAAGTTTGT-CTCTTAAATTAGACAAACTTGAA
187 GGCTTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATGAGCCAAACGTGGA
* ** ** ** * * ** * * * * *
1686196 TACTTA-TACT-ATTCCACATTC-TTTTCAAGACTAGGCACT-TTAGCATAGTCTTCTCACTAGG
249 TTC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAAG
* * * * * ** *
1686257 A-TACATGATATTGGTG-CTTTCGTTTCGCA-AGAAAGGC-TTTCTTCCCACCAATTTT--TGTA
311 ATTA-ATGATATTGATGATTTTC-TTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-TA
* * * * * * * * * * * *** * *
1686316 AAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTT-G
371 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTC-TTTTCA
* * * ** ** *
1686380 TGATTAGGCACTGC-AAAA-ATGTTCTCCTCATTAAGATTA-
435 AGATT-GGGA-TCCAAAAACACATTCTATTCATTAGGA-TAC
* * * ** * ** * * * * ** *
1686419 ATGATATTGATGATTTTCTTTTGCATTG-AAA-TCTTTTCTTT-GCCTTATTTTCCTTAAAATCA
1 ATGACAGTGATGCTTTGGTGTCACA-AGAAAAGCCTTTT-TTTCACCGT-TTTT-GATAGAATCA
** * * * * * * * * * *
1686481 AAGTTAATCCCCTAAATAAGACAAGCATTGATTCTCGCA-AC-AATCTCCATTCTTTTCAAGATT
62 AAGTTTGTCTCTTAAATAAGGCAAACA-TGAATAT-TCATACTATTC-CCTTTC-TTTCAGGATT
* ** * * * * * * * ** *
1686544 -GGGA-TCCAAAAGCACATTC-CCTTCATTAGGATACATGACAGTGATGCTTTGGCATCGCAAGA
123 AGGCACT-TTAAA-CATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGA
* * *** * * * ** * **
1686606 AAAGC-TTCTTTTCGGTC-GTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAAACAGACAAACAC
185 AAGGCTTTC-TTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATGAGCCAAACGT
* * ** * ** * **
1686667 GAATACTCA-TACT-ATTCCTCATTC-TTTTCAAGATTAGGCACT-T-TAAACATAGTCCTC-TC
246 GGATTCT-AGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCAT-
** * * * *
1686726 GTAAGGA-TACACAATATTGAT--TCTTTCGTTTCGCA-AGAAAGGC-TTTCTTCT-CACCGATT
307 -TAA-GATTA-ATGATATTGATGAT-TTTC-TTTTGCATGGAAA-TCTTTTCTT-TGC-CCTATT
* ** * * * * * * * *** *
1686785 TT--TGTAAAGTCAAA-TTTGTGCCTCAAATGAGCCAAACGT-GAATTCTAGTTTCGATCTTCC-
364 TTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-ATTCTCGCAACAATC-TCCA
* ** * * * ** * *
1686845 CTCATTTT-GTGATTAGGA-ACAACAAAAACATTCTCCTCAGTAAGATTA-
426 TTC-TTTTCAAGATTGGGATCCAA-AAACACATTCTATTCATTAGGA-TAC
* * * * ** * ** ** * * *** *
1686893 ACGATACTGATGATTTTCTTTTGCGTTG-AAA-TCTTTTCATTGC-CC-TACTTTCCTTGGAATC
1 ATGACAGTGATGCTTTGGTGTCAC-AAGAAAAGCCTTTT--TTTCACCGT--TTTTGATAGAATC
* * ** * * * * * *
1686954 AAAGTTTATCCCTTAAATAA-AAAAAGCATCGATTCTCGCA-AC-AATCTCCATTCTTTTCAAGA
61 AAAGTTTGTCTCTTAAATAAGGCAAA-CAT-GAATAT-TCATACTATTC-CCTTTC-TTTCAGGA
* *** * * * * * **
1687016 TT-GGGATCCAAAAACACATTCTGT-TCATTAGGATACATGATAGTGATG-TTGT-GGTTCACAA
121 TTAGGCA-CTTTAAACATAGTCT-TCTCATTAGGATACACGATATTGATGCTT-TCGTTTTGCAA
* * ** ** ** * ** * * * * * **
1687077 GAAAAGCTTTTTTTTCGTCTTTTTTTATAGAA-TCAAAACTGGT-CTTTTAAATCAGACAAACAA
183 GAAAGGCTTTCTTCCCACCAATTTTTGTA-AAGTCAAAGTTCGTGC-CTCAAATGAGCCAAACGT
* * * * ** * * * * * **
1687140 GAATACTCATACTATT--TC-CCATTC-TTTTCAAGATTCGGCACTTTAAACATAGTCTTTTCAT
246 GGAT--TC-TAGTTTTGATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCAT
* * * * * * * * ***
1687201 GAGGA-TACACGATATT--TGTATTTTGGTTTCGCA-AGAAAGGCTCTTTTC-CTACTAAATTTT
307 TAAGATTA-ATGATATTGATG-ATTTT-CTTTTGCATGGAAA---TCTTTTCTTTGCCCTATTTT
* * * * * * * * ***** *
1687261 --GTAAAGTCAATA-TTCATGCCTCAAATGAGCCAA-CATGGATTCTAGTTTTGATCTTCATT-T
366 CCTTAAAATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCT
*** * * ** * *
1687321 ATTTTGGGATTAGGCA-CTATAAAAC-CATTCTCCTCTTTAAGATTA-
430 -TTTCAAGATT-GGGATCCA-AAAACACATTCTATTCATTAGGA-TAC
* * ** * *** * * * ** *
1687366 ATGATA-TCGATGATTTTCTTTTGTATTG-AAATCATATTTTTTGC-CC-TATTTTCTTTAAAAT
1 ATGACAGT-GATGCTTTGGTGTCACA-AGAAAAGCCT-TTTTTT-CACCGT-TTTT-GATAGAAT
** * * * * ** * * * *
1687427 CAAAGTTCATCCCCTAAAAAAGACAGGCATTG-AT-TCTCATAACAATCTCCATTT-TTTATAAG
60 CAAAGTTTGTCTCTTAAATAAGGCAAACA-TGAATAT-TCAT-ACTAT-TCCCTTTCTTT-CAGG
*** * * * * ** * * * * *
1687489 ATT-GAG-ATCCAAAAACACATTCCCTT-T-GTTAGGATACATGGCATTCACGCTTTGGTGTCGC
120 ATTAG-GCA-CTTTAAACATAGT--CTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGC
* * ** * * * *
1687550 AAGAAATGCTTTTCTTTCCACCGTTTTTTGATAGAA-T-AAGTGTTTGT-CTCTTAAAT-ATGAC
181 AAGAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCAA-AGTTCGTGC-CTCAAATGA-GCC
* * * ** ** ** *** * * * * * *
1687611 ACACATGAAAGCTTA-TACT-ATTCCCCATTC-TTTTCAACATTGGGCACTTTAAACATAGTCTT
240 AAACGTGGATTC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTC
* * * * * *** ** * *
1687673 CTCACTATGA-TACACGATATTGGTGCTTGGGTTTCACA-AGAAA----------G-GC--TTTT
302 CTCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* ** * * * * * * * * * ***** * *
1687723 --GTAAAGCCAAAATTCGTGCCTCAAATGAGCCAAACATGGA-TCCCAGTTTTGATCTTCAATCA
366 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GCAACAATCTCCATTC-
** * * ** *
1687785 TTTT-GTGATTAGGCAT--AATAAAAACATTCTCCTCATTAAGATTA-
429 TTTTCAAGATT-GGGATCCAA-AAACACATTCTATTCATTAGGA-TAC
* * * * * * ** *
1687829 ATGATATTGGCGATTTTCTTTTGTGT----TG-AAA-TCTTTTCTTTGC-CC-TATTTTCCTTAA
1 ATGACA---GTGA--TGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGT-TTTT-GATAG
* * ** * * * *
1687886 AATCACAGCTCATCTCTTAAAT-AGGACAAGCATCG-AT-TCTCACAACAATCTCCATTGT-TTT
57 AATCAAAGTTTGTCTCTTAAATAAGG-CAAACAT-GAATAT-TCA-TACTAT-TCCCTT-TCTTT
* * *** * * * * *
1687947 CAAGATTCGAGTCA-AAAAGAACAT--TCCTT-TCATTAAGATTCATGACT-TTGATGCTTTGGA
116 CAGGATT--AGGCACTTTA-AACATAGT-CTTCTCATTAGGATACACGA-TATTGATGCTTTCGT
* * * * * ** * * **
1688007 GTTGCAAGAAATGTTTTCCTTTCCACC-GTTTCTAATAGAA-TCAAAGTTTGT-CTCTTAAAAAA
176 TTTGCAAGAAAGGCTTT-CTTCCCACCAATTT-TTGTA-AAGTCAAAGTTCGTGC-CTCAAATGA
* * * * ** * ** * * * * *
1688069 GACAAACATGAATACTCA-TACTAATCTTCATTC-TTTTCAAGATTAGGCACTTTAAACATAGTA
237 GCCAAACGTGGATTCT-AGTTTTGATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTC
* * * * * ** ** *
1688132 TTCTCATTAGGA-TACATGATATTGGTGCTTTGT-TTTTGCA-AGAAAGGTTTT-TATACCACCA
300 TCCTCATTAAGATTA-ATGATATTGATGATTT-TCTTTTGCATGGAAATCTTTTCT-TTGC-CCT
** * * * * ** * * *** * * * * *
1688193 ATTTT--TGTAAGGTCAAAATCCGTGCCTCCAATGAGCCAAATGTGGATTCTAGTATTC-ATCTT
361 ATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCA-ACAATCTC
* ** * ** *
1688255 CATTCACTTT-GTGATT-AGA-CACTATAAAA-ACATTCTCCTCATTAAGATTA-
424 CATTC-TTTTCAAGATTGGGATC-C-A-AAAACACATTCTATTCATTAGGA-TAC
* * * ** * * * * *** *
1688305 ATGATATTGATGATTTTCTTTCGCATA-AAAA-TCTTTTCTTTGC-CTTGTTTTCCTTAAAATCA
1 ATGACAGTGATGCTTTGGTGTCACA-AGAAAAGCCTTTT-TTT-CAC-CGTTTTTGATAGAATCA
* ** * * ** * * * * *
1688367 ATGTTCATCCCTTAAATAAGACAGGCATCG-AT-TCTCGTAAC-AATCTCCATTCTTTTCAAGTT
62 AAGTTTGTCTCTTAAATAAGGCAAACAT-GAATAT-TCAT-ACTATTC-CCTTTC-TTTCAGGAT
* ** *** * * * * * * * * * **
1688429 TGGGTTCCAAAAACACATTCTAT-TCATTAGAATACATGACAGTGATGGTTTGGTGTCACAAGAA
122 TAGGCACTTTAAACATAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAA
* * * * * * * * ** * *
1688493 AAGCTTTTTTTCCA-CTA-TTTTGATAGAGTC-AAGTTTGT-CTCTTAAATAAAACAAACATGTA
186 AGGCTTTCTTCCCACCAATTTTTG-TAAAGTCAAAGTTCGTGC-CTCAAATGAGCCAAACGTGGA
* ** ** * ** * * * *
1688554 TACTTA-TACT-ATTCCCCATTCTTTTTCAGATTAGGCACT-T-TAAACATGGTCTTCTCACTAG
249 TTC-TAGTTTTGA-TCTTCATTCATTTTGTGATTAGGCACTATAAAAACAT--TCTCCTCATTAA
** * * *** ** * ** *
1688615 GA-TACACAATATTGGT-ACTTTGGATT-CACAAGAAAGGCTTTT-TTCCCACCAATTTT--TGT
310 GATTA-ATGATATTGATGATTTTCTTTTGCA-TGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-T
* * * * * * * * * * * * *** *
1688674 AAATTCTAAGTTCGTACCTCAAATGAGCCAAACGTGGATTCTAGTATTTATCTTCATTCATTTT-
370 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTC-TTTTC
** * * * *
1688738 GTGATTAGGCA-CTATAAAA-ACATTCTCCTT-ATTAAGATTA-
434 AAGATT-GGGATCCA-AAAACACATTCT-ATTCATTAGGA-TAC
* * * ** * ** * * ** *
1688778 ATGACATTGACGATTTTCTTTTGCATTG-AAA-TCTTTTCTTTGC-CC-TATTTTCCTTAAAATC
1 ATGACAGTGATGCTTTGGTGTCACA-AGAAAAGCCTTTT-TTT-CACCGT-TTTT-GATAGAATC
** * * * * * * * * *
1688839 AAAGTTCATCCCCTAAATAAGAG-AAGCATTGATTCTCGCA-AC-AATCTCCATTCATTTCAAGA
61 AAAGTTTGTCTCTTAAATAAG-GCAAACA-TGAATAT-TCATACTATTC-CCTTTC-TTTCAGGA
* ** * * * * * ** * * *
1688901 TT-GGGA-TCCAAAAATACAATCCTT-TCAGTAGGAAACATGGCATTGATGCTTTGGTGTTGTAA
121 TTAGGCACTTTAAACAT--AGT-CTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAA
** * * * * * * *
1688963 GAAATTCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTAAATAAGTCAAACA
183 GAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTGCCTCAAATGAGCCAAACG
* * * ** * * * ** * *
1689026 TGAATACTCGTACT-AT-TCCCTATTC-TTTTGAAGATTAGGC-GT-TTTAAGCATTGTCTTCTC
245 TGGATTCTAGTTTTGATCT-TC-ATTCATTTTG-TGATTAGGCACTATAAAAACA-T-TCTCCTC
* * ** * ** *
1689086 ATTAGGA-TACACGATATTGGCGCTTTGGTTTCGTGCCTCAAATAAGCCAAACGTCGATTCTAGT
305 ATTAAGATTA-ATGATATTGATGATTTTCTTT--TG---C--AT--G-GAAA--TC--TT-T--T
* ** *** * ** * *
1689150 -TTTGTTCTTCATTCATTTTGTGATTAGGCTTTGTAAA-AACATTCTCCTT-ATTAAGATTAATG
352 CTTTG--C--C-CT-A-TTT-TCCTTA--AAAT-CAAAGTTCA-TC-CCTTAAATAAGA-CAA-G
* * ** * * *** * * *
1689212 ATATTGGTGATTTTCTTTTGCGTGGA-AATCT--TTTCTTTGCCCTATT---TTCCTTGAAATCA
402 -CA-T--CGA--TTC---T-CG-CAACAATCTCCATTCTTTTCAAGATTGGGATCC--AAAAACA
* * * *
1689271 AAGTTC-ATCCCTTA--A-AG
454 CA-TTCTATTCATTAGGATAC
* * * * * * * * * * * * ** * *
1689288 AAGACA---A-GCATCGATTCTCATAACAATATCCATTATTTTCA-AGATTAGGATCCAAAAACA
1 ATGACAGTGATGCTTTG-GTGTCACAAGAAAAGCC-TTTTTTTCACCGTTTTTGAT--AGAATCA
* * * *** ** * ** *** * *
1689348 CA-TTCTAT-TCATTAGGATACACGGCAGTTATGCTTTGGTGTCGCA-AGAAAAGCTTTTTTTTC
62 AAGTT-TGTCTC-TTA-AATA-A-GGCAAACATG-AAT-AT-T--CATACTATTCCCTTTCTTTC
** ** ** * * * * * * * **
1689410 ACCATTTTTG-A-TAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTT-ATAATAT
117 AGGA-TTAGGCACTTTAAACATAGTCT-TCTC----ATTAG-GATACACG-ATA-TTGATGCT-T
* * * *** ** * * * ** *
1689472 TCACCATTCTTTTCAAGATTAAGCACTTTAAACATAGTC--TTCTCACTTGGATACACGATA-TT
172 T---C-GT-TTTGCAAGA--AAG-GCTTTCTTCCCA-CCAATT-T---TTGTAAAGTC-AAAGTT
* * ** ** ** *** *
1689534 GGTGCTTTC-GTTTCG-CAAGA-AAGG---CT--TTTT-A-C-TCAAGAAATTTT-TG-TAAGG-
223 CGTGC-CTCAAATGAGCCAA-ACGTGGATTCTAGTTTTGATCTTC-ATTCATTTTGTGATTAGGC
* * * * * *
1689585 ----T-CAAA-ATTCGTGCCTCAAATGAGCCA-AACATGGATATT-A-G-TTTTGATCTT-CAT-
285 ACTATAAAAACATTC-T-CCTC-ATTAAG--ATTA-AT-GATATTGATGATTTT-CTTTTGCATG
** * * * * * * * ***
1689638 -TCAT-TTTGTGATTAGGCACTATAAAAACATTCTCATCTTTAAGATTAATGATATTGATGATTT
342 GAAATCTTT-T-CTT-TGCCCTAT-------TT-TC--C-TTAAAATCAA--A-GTTCATCCCTT
*** ** ** ** * * * * **** *
1689701 TCTTTTG-CATTAAAATCTTTTCTTTGC-CCTATTTTCC-TTAAAATCAA-AGTT--CATCCCTT
390 AAATAAGACA--AGCATCGATTC-TCGCAAC-AATCTCCATTCTTTTCAAGA-TTGGGAT-CC--
* * *
1689760 AAATTAGACAAGCA-TCGATTC-TCA-CA-AC
447 AAA--A-AC-A-CATTCTATTCATTAGGATAC
** * * ** ** **
1689788 A--ATCTCT-ATTGTTTTCAAGACTGGGATCAA-AAAA-CACATTTCCTTCA----TTAGGATA-
1 ATGA-CAGTGA-TGCTTT---G-GTGTCA-CAAGAAAAGC-C-TTTTTTTCACCGTTTTTGATAG
* * * * * *** * *
1689843 CAT--GA-CTT-TCATGCTTTAGTGTCGCAAGAAATG-CT-TTC---CT-TTCCATCGTTT-TTG
57 AATCAAAGTTTGTC-T-CTTAAATAAGGCAA-ACATGAATATTCATACTATTCC--C-TTTCTT-
* * * * *** * * * *
1689897 AT-AGAATCAAAGTTTG-TCTCTTAAATCA-A-AC-AAGCA-T-GAATACTC-ATACT-ATTCTC
115 -TCAGGAT--TAG---GCACT-TTAAA-CATAGTCTTCTCATTAGGATACACGATATTGATGCT-
* * ** * ** * * *
1689953 CATTC-TTTT-CAAGATTAGGC--ACTT-TAAACATAGTCTTCTCATTAGGATGCACGATA-TTG
171 --TTCGTTTTGCAAGA-AAGGCTTTCTTCCCACCA-A-T-TT-TTGTAAAG-T-CA--A-AGTTC
* * **** ** ** * * ** **
1690012 GGGCATTGGTTTCGTAAGAAAG-GG--T-T--TTTT--CCCACAAAC-TTTTGT-A--AGGTCA-
224 GTGCCTCAAATGAGCCA-AACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGG-CAC
* ** * * ** * ** **
1690064 -AT---ATCCGT-GCCTC---AA-ATGAGCGA-AATG-TGGATTCTAGTTTTG-AT---CTTC-T
287 TATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT-GATT-TTCTTTTGCATGGAAATCTT
** * * * * * *
1690113 TTCAATTTG---TGATTAGGCACTATAAAA--ACA-TTCTTTTCTTTAAGATTAATGATATTG-A
350 TTC--TTTGCCCT-ATT-TTC-CT-TAAAATCAAAGTTC-ATCCCTTAA-A-TAA-GACA-AGCA
* ** * * **** *
1690171 T-GATTTCCTTTTGCATGGA-AATCTTAAAATAAAGTTATCTTCTTC-TGCTCTATTTTCCTTAA
404 TCGA-TT-C--TCGCA---ACAATC------TCCA--T-TCTT-TTCAAGAT-TGGGATCC-AAA
* * * *
1690233 AATAAAGT-TATCTC-TTA-AATA-
450 AACACATTCTAT-TCATTAGGATAC
* * * * * * * *
1690254 A-GACA---A-GCATCGAT-TCTC--GTAACAATCTCTATTCTTT--CCATTTTTGGATCCAAAA
1 ATGACAGTGATGCTTTGGTGTCACAAG-AA-AAGC-CT-TTTTTTCACCGTTTTT-GAT--AGAA
* * * * * *** ** * * ** **** *
1690309 ACACA-TTCTAT-TCATTAGCATACATGACAGTGATGCTTTAGGGTCACAAGACAAGCTTTTTTT
59 TCAAAGTT-TGTCTC-TTA-AATA-A-GGCAAACATG-AATA--TTCATACTATTCCCTTTCTTT
** ** ** * * * * * *
1690372 GCACTATTTTTG-A-TAGAATCAAAGT-TTGACTCCTAAACTT-GACAAACATGAATACTT-ATA
116 -CAGGA-TTAGGCACTTTAAACATAGTCTT--CT-C---A-TTAG-GATACACG-ATA-TTGATG
* * * ** * * * *
1690432 CTATTCCCTATTCTTTTCAAGATTAA-GC--ACTT-TAAACATAGTCTTCTCACTAA-TACACGA
169 CT-TT--C--GT-TTTGCAAGA--AAGGCTTTCTTCCCACCA-ATTTTTGT-A--AAGT-CA--A
* * ** ** ** ***
1690492 TA-TTGGTGCTTTC-GTTTCG-CAAGA-AAGG---CT--TTTT-A-C-TCAAGAAATTTT-TG--
219 -AGTTCGTGC-CTCAAATGAGCCAA-ACGTGGATTCTAGTTTTGATCTTC-ATTCATTTTGTGAT
* * * * *
1690542 TA---A--AGT-CAAA-ATTCGTGCCTCAAATGAGCCA-AACATGGATATTAGTTTTGATCCTCA
280 TAGGCACTA-TAAAAACATTC-T-CCTC-ATTAAG--ATTA-AT-GATATT-G--ATGAT--T--
* * ***** * * ** * **
1690599 TTCATTTTGTGATTAGGCACTATAAAAACATT-CTC-ATCTTTAAGATTAATGATATTGATGATT
330 TTC-TTTTG-CA-T-GG-A-AATCTTTTCTTTGCCCTAT-TTT--CCTTAA--A-A-TCA--AAG
* * * **** ** * * * ** *
1690662 TTCTTTTGCATTGAAATCTTTTCTTTGC-CCTATTTTC-CTTAA-AATC-AAAGTTCGTCCCTTA
380 TTC--ATCCCTT-AAAT-AAGAC-AAGCATCGATTCTCGC--AACAATCTCCA-TTC-T---TTT
* ** * * * *
1690723 AATGAGACAAGCGTCGATTCTCGTAACAATCTCCATTCT-TCTCAAGATTGGGATCCAAAA
433 CA--AGA-TTG-G--GA-TC-C--AA-AAAC-ACATTCTAT-TC---ATTAGGAT----AC
* * * * * * * **
1690783 AT-ACATTTTATTCATTAGG-AT-ACATG-ACAGTGGTGTTTTGGTGTCACAAGAAAAGCTTTTT
1 ATGACA-GTGATGC-TTTGGTGTCACAAGAAAAG-CCT-TTTT--T-T--C------A-------
* * * * *
1690844 TTCCACTGTTTTTGATAGAATCAAAGGTTGTCTCTTAAATAAGGAAAACAAGAACAGTCATACTA
44 ---C-C-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTA
* * * *
1690909 TTCCCTATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAGTAGGATACGCGATATT-A
104 TTCCC--TTTCTTTCAGGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGA
* * * * * * * * * *
1690973 GTGCTTTGGATTCGCAAAAAAAGGCATTT-TTCTCACTAATTTTTATAAAGTCTAAGTTCGCGTC
167 -TGCTTTCGTTTTGC-AAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCC
* * ** *
1691037 TCAAATAAGCCAAACATGGAATT-TAGCATTAATCTTCATTCATTTTGTGATTAGGCACTATAAA
229 TCAAATGAGCCAAACGTGG-ATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* *
1691101 AACAATCACCTCATTGAGATTAATGATATTGATGATTTTCTGATTAATGATATTGATGATTTTCT
293 AACATTCTCCTC---------------ATT-A--A------GATTAATGATATTGATGATTTTCT
* * * *
1691166 TTTGCACT-GAAATCTTTTCTTTGCCCTATTTTTCATGAAACCAAAGTTCATTCCC-TAAATAAG
334 TTTGCA-TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAAATAAG
* * * *
1691229 ACAAGCATCAATTCTCACAACAATCTCCATTCTTTTCAAGATTTGGATCCAAAAACACATTC-CT
397 ACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTAT
1691293 TCATTAGGATAC
462 TCATTAGGATAC
* * * ** * * *
1691305 CTGGCATTGATGCTTTAATGTCGCAAGAAATG-CTTTTCTTTCCACCATTTTTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAAA
* * * ** * ** * * *
1691369 GTTTATCTCTTAAATAAGACAAACATGAGTGCTAATGTTATTCCCTATTTTTTTGAAGATTAGGC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCCC--TTTCTTTCAGGATTAGGC
* * * * * *
1691434 ATTTTAAGCATTGTCTTCTCATTAGGATACACGATATTGGTGCTTTAGTTTCGCAAGAAAGGCTT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTT
* * * * * * *
1691499 TTTTCCCACCAATTTTTGTAAAGTCAAAATTCATGGCTCGAATGAGCCAAACGTGGAATCTGGTT
192 TCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
** * * * *
1691564 TTGATCTTCATTCATTTCATGATTAGGCACTATAAAAATATTATTCTCATTAAGATTATTGATAT
257 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATAT
* * * *
1691629 TGATGGTTTTCTTTCGCATGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
322 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * *
1691694 CTTAAATAAGACAAGCATCGATTCTCGTAAGAATCTCCATTCTTTTCAAGTTTGGGATCCAAAAA
387 CTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
*
1691759 CACATTCTATTCATTAGAATAC
452 CACATTCTATTCATTAGGATAC
* * * **
1691781 ATGACAGTGAT-CGTTCGGTGTCACAAGAATAG-CTTTTTTCCACTATTTTTGATAGAATCAAAG
1 ATGACAGTGATGC-TTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAG
* * * *
1691844 TTTAT-TGCTTAAATAAGACAAACATGAATACTT-ATACTATTCCCCATTAT-TTTCAAGATTAC
65 TTTGTCT-CTTAAATAAGGCAAACATGAATA-TTCATACTATT-CCC-TT-TCTTTCAGGATTAG
* * * **
1691906 GCACTTTAAACATAGTCTTCTCACTAGGATACATGATATTGGTGCTTT-GGATTGACAAGAAAGG
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTG-CAAGAAAGG
* * * * * * *
1691970 CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCACAAATGAGTCAAACGTGGATTATA
189 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * *
1692035 -TTATTGATCTTCATTCATTTTGTGATTAGGCATTAAAAAAACATTCTCTTCAATAAGATTAATG
254 GTT-TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* * * * * *
1692099 ATAATGGTGATTTTCTTTCGCATGGAAAGCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTT
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * *
1692164 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAAGATTGAGATCCA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * *
1692229 AAAAGACATTCCATTCATTAGAATAC
448 AAAACACATTCTATTCATTAGGATAC
* **
1692255 ATGACAGTGAT-CGTTTGGTGTCACAAGAAAAG-CTTTTTTCCACTATTTTTGATAGAATCAAAG
1 ATGACAGTGATGC-TTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAG
* * * *
1692318 TTTAT-TGCTTAAATAAGACAAACATGAATACTT-ATACTATTCCCCATTAT-TTTCAAGATTAC
65 TTTGTCT-CTTAAATAAGGCAAACATGAATA-TTCATACTATT-CCC-TT-TCTTTCAGGATTAG
* * * **
1692380 GCACTTTAAACATAGTCTTCTCACTAGGATACATGATATTGGTGCTTT-GGATTGACAAGAAAGG
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTG-CAAGAAAGG
* * * * * * *
1692444 CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCACAAATGAGTCAAACGTGGATTATA
189 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * *
1692509 -TTATTGATCTTCATTCATTTTGTGAGTAGGCACAATAAAAACATTCTCTTCATTAAGATTAATG
254 GTT-TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* ** * * * *
1692573 ATACTGATGATTTTCTTTTGTGTTGAAATCTTGTCTTTGCCCTATTTTTCTTAAAATCAAAGTTT
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
1692638 ATCCTTTAAATAAGACAAGCATCGATTCTCGCAATAATCTCCATTATTTTCAAGGTTGGGATCGA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* ** *
1692703 GAAACACATTCCCTTCATTAGGATGC
448 AAAACACATTCTATTCATTAGGATAC
** * * * * * *
1692729 ATGACTTTGACGCTTTGGTGCCACAAGAAATG-CTTTCTTTTCCACCATTTCTGATAGAATCAAT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT-TTTT-CACCGTTTTTGATAGAATCAAA
* * * * ** * *
1692793 GTTTATCTCTAAAATCAGACAAACATGAATGCTCATACTATTCTCCATTCTTTTCAAGATTAGGC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTC-CCTTTC-TTTCAGGATTAGGC
* * * * *
1692858 ACTTTAAACATAGT-TT-TC-------T---CGATATT-AGTGCTTTGGTATCGCAAGAAACGTT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTTGCAAGAAAGGCT
* * * * *
1692910 TTTTTCTCACCAA-TTTTGTACAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCCAGT
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* *
1692974 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTATCTTC-TATAAGATTAATGAT
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT-TAAGATTAATGAT
* * * *
1693038 ATTGACGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
*
1693103 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGAATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
*
1693168 AACACATTCTATTAATTAGGATAC
450 AACACATTCTATTCATTAGGATAC
** ** * * * *
1693192 ATGACAGTGACACTTTGGTGTCGTAGGAAAAG-CTTTTTTTCCGCCATTTTCGATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * * *
1693256 TTTGTCTCTTAAAT-AGGACAAACACGAATAGTCATACTAATCTCTATTATTTTCTGGATTAGGC
65 TTTGTCTCTTAAATAAGG-CAAACATGAATATTCATACTATTCCCT-TT-CTTTCAGGATTAGGC
* ** * * * * * * *
1693320 ACTATAAATGTAGTCTTCTCGTAAGTATACACGATATTGATGCTTTCATTTCGTAAGAAAGGCAT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTT
*** * * * * * * *
1693385 TCTTCTTGCCAATTTTTTTAAAGTCAAAGTTCATGCTTGAGCA--AGCCAAATGTGGATTTTAGT
192 TCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCA-AATGAGCCAAACGTGGATTCTAGT
* *
1693448 TTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTAAGGTTAATGATA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA
* * * * * *
1693513 TTGGTGATTTTATTTCGCATGGAAATCTTTTCTTTGCCCTACTTTGCTTAAAATCAAAGTTTATC
321 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * *
1693578 CCTTAAATAAGACAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
1693643 ACACATTCTATTCATTAGGATAC
451 ACACATTCTATTCATTAGGATAC
* * * * ** *
1693666 ATGTCAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCGTCGTTTGTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * * * *
1693731 TTGTCTCTTAAATAAGACACACATGAACAGTCTTACTATTCCTCGTTCCTTTCAAGATTAGGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCC-C-TTTCTTTCAGGATTAGGCAC
* * ** *
1693796 TTTAAACATAGTCTTCTCGTAAGGATACACGATATTGATGCTTTCGTTTCACAAGAAAGGATTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * * * *
1693861 TTCCCACCAATTTTTGTAAAGTCAAAGTTTGTGCCTCAACTAAGCCAAACATGGATTTTAGTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* *
1693926 GATCTTCATTCATTTTGTGATTAGGAACAATAAAAACATTCTCCTCATTAAGATTAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
* * * * * *
1693991 ATGATTTTCTTTAGCGTTGAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCAACTCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *
1694056 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAATACCA
389 TAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
** * *
1694121 CATTCCCTACATTGGGATAC
454 CATTCTATTCATTAGGATAC
* ** * * * *
1694141 ATAACTTTGATGCTTTGGTGTCGCAA-AAGATG-TTTTTCTTTCCACCGTTTTCGATAGAATCAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAA-AAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAA
* * * * *
1694204 AGTTTGTCTCTAAAATCAGACAAACATGAATACTT-ATACTATTCCCCATTCTTTTCAAGATTAG
63 AGTTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATTAG
* * * * *
1694268 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGGTTTGGTTTCGCAAGAAAGGT
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * * * * * * *
1694333 TTTTTTCCCACTAATTTTTGT-ACGTAAAAATTCGTGCCTCAAATAAGCCAACCGTGGATTTTCG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
** * * * *
1694397 TTTTGATCTTCATTCATTTTGTGATTAGTTATTATAAAAATATTCTCGTCTTTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * *
1694462 ATTAATGATTTTCTTTTGCATGAAAATCTTTTATTTTCCCTATTTTCCTTAAAATCAAACTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * *
1694527 CCCTTAAAGAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* * *
1694592 ATCACATTTTATTGATT-GGCATAC
450 AACACATTCTATTCATTAGG-ATAC
* * *
1694616 ATGACAGAGATGCTTTGGTGTCACAAGAAAAGCCTTCTTTTCGCCGTTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * *
1694681 TTGTCTCTTAAATAGGGCAAACATGAATAGTCATACTAATCTCTATTCTTTTCTGGATTAGGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCCCT-TTC-TTTCAGGATTAGGCAC
* ** * * * * *** * *
1694746 TATAAATGTAGTCTTCTCGTAAGGATACACGATATTGATGTTTTCCTTTCATAAAAAAAGCTTTC
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* * *** * * *
1694811 TTCCTACCAATTTTTTTAAAGTCAAAGTTCGTGCCTCAAGCAAGCCAAATGTGGATTTTATTTTT
194 TTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTT
* * * * * *
1694876 GATCTTCATTTATTTTATGATTCGGTACTATAAAAACATTTTCCTCGTTAAGATTAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTG
**
1694941 ATGATTTT-TTTTGCATGGAAAATCTTTTCTTTGTACTATTTTCCTTAAAATCAAAGTTCATCCC
324 ATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * ** *
1695005 TTAAATAAGACAAGCATCGATTCTCGTAAGAATCTCCATTCTTTTCAACTTTGGGATCCAAAAGC
388 TTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
* **
1695070 ACATTCTATTCATTAGAACGC
453 ACATTCTATTCATTAGGATAC
* * * * *
1695091 ATGACAGTGATGGTTTGGTGACGCAAGAAAAG-CTTTTTTTCCACTGTTTTTGATAGAATCAATG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * * * *
1695155 TTTGTCTCTTAAATAAGGCAAACAAGAATCTT-ATAGTATTCCCCATTCTTTGTAAGATTAAGCA
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCCTTTCTTT-CAGGATTAGGCA
* * * * * * * *
1695219 CTTTAAACATAGTCTTCTCACTATGATAAATGATATTGGTGCTTTGGTTTCGCAGGAAAGGCTTT
128 CTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC-TT
* ** ** * * * * *
1695284 TTTTCGAAGAAATTTTTCTAAAGTCAAAATTCGTGCCCCAAATAAGCCAAACGTGGATTTTAGTT
192 TCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
* * * * ** *
1695349 TTGATCTTAATTCATTTTGTGATTAGGCACAATAAAAGCAATCTCCTCATTAAGATTTGTGATAG
257 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATAT
* ** * *
1695414 TGTTGATTTTCTTTTGTGTTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCC
322 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* *
1695479 CTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTCCAAGATTGGGAT-CATAAA
387 CTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA-AAA
** *
1695543 ACACATTCCCTTCATTTGGATAC
451 ACACATTCTATTCATTAGGATAC
* * * ** * * * * *
1695566 ATGAC-TTCGATGCTTTGCTGCCGTAAGAAATG-CTTTCCTTTCCAACGTTTCTAATAGAATCAA
1 ATGACAGT-GATGCTTTGGTGTCACAAGAAAAGCCTTT--TTTTCACCGTTTTTGATAGAATCAA
* * * * *
1695629 AGTTTGTCTCTTAAATCAA-ACAAACATGAATACTCGTACTATTCTCCATTCTTTTCAAGATTAG
63 AGTTTGTCTCTTAAAT-AAGGCAAACATGAATATTCATACTATTC-CCTTTC-TTTCAGGATTAG
* * * * * * *
1695693 GCACTCTAAACATAATCTTCTCATTAGGATACACGATATTGGTGCATTGGTTTCGTAAGAAAGG-
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * * *
1695757 TTTTTCTCCCACCAATTTTTGTAAGGTCAAAATTTGTGCCTCAAATGAGCCAAACGTGGATACTA
190 TTTCT-TCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* ** *
1695822 GTTTTGATCTTCATTCATTTTGTGATAAGGCACTATAAAAACATTCTATTCTTTAAGATTAATGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* * *
1695887 TATTGATGGTTTTCTTTTGCATGGAAATATTTTCTTTGCCCTGTTTTCCTTAAAAT-AAAGTTCA
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * **
1695951 T-CCTTAAAATAAGACAAGCATCGATTCTCGTAACAATCTCTATTCTTTCCATTATTAGGG-TCC
384 TCCCTT-AAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATT-GGGATCC
1696014 AAAAACACATTCTATTCATTAGGATAC
447 AAAAACACATTCTATTCATTAGGATAC
* * *
1696041 ATGATAGTGATGCTTTGGTGTCATAAGAAAAG-CTTTTTTTGCACTGTTTTTGATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * * *
1696105 TTTGTCTCCTAAACT-TGACAAACATGAATACTT-ATACTATTCCCCATTCTTTTCAAGATTAAG
65 TTTGTCTCTTAAA-TAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATTAGG
* * * *
1696168 CACTTTAAACATAGTCTTCTCACTAGGATACACGATATTGGTGTTTTCGTTTCGCAAGAAAGGCT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * ** * * *
1696233 TTTTTCCTAAGAAATTTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATAT-TA
191 TTCTTCC-CACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGAT-TCTA
* * * *
1696297 GTTTTGATTTTCTTTCATTTTGTGATTAGGCACTATAAAAATATTCTCCTCTTTAAGATTAATGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* *
1696362 TATTGATGATTTTCTTTT-CAATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTC
319 TATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * * * * *
1696426 GTCCCTTGAATAAGACACGCATCGATTGTCGTAACAATCTCCATTCTCATAATGAGGAGAAT-GT
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCT--T-TTCA--AGATTGGG
* * * *
1696490 ATTTTTTTCAAAAATACATTTTATTAATTAGGATAC
443 A-----TCCAAAAACACATTCTATTCATTAGGATAC
* * * * *
1696526 ATGATAGTGATGCCTTGGGGTCACAAGAAAAG-CTTTTTTTCCACCGTTTCTGATAGAATCAACG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * * * * * *
1696590 GTTATCTCTTAAATAAGACAAACATGAATAGTCATACTGTTCCCCATTTTTTTTCAAGATTCGAC
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCC--TTTCTTTCAGGATTAGGC
* * * * *
1696655 ACTTTAAACATAGTCTTCTCACTAGGATACACGATATTGGTGCTTTTGATTCGCAAGAAAGGCAT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC-T
* * * * * * * * *
1696720 TT-TTCCCCCCAATTTTTATAAGGTCTAAGTTCGCGGCTCAAATAAGCCAAGCATGGAATT-TAG
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGG-ATTCTAG
** * * *
1696783 CATTGATCTTCTTTCATCTTGTGATTAGGCACTATAAAAACATTCTCCTCATTGAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * *
1696848 ATTGATAATTTTCTTTTGCACT-GAAAACTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTCA
320 ATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * *
1696912 TCCCCTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGTTTTGTATCCAA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * *
1696977 AAACCCGTTCTATTCAATAGAATAC
449 AAACACATTCTATTCATTAGGATAC
* * * * ** *
1697002 ATGAAAGTGAT-CGTTTGGTGTCGCAAGAGAAG-CTTTCTTTCCACTATTTTTTATAGAATCAAA
1 ATGACAGTGATGC-TTTGGTGTCACAAGAAAAGCCTTT-TTTTCACCGTTTTTGATAGAATCAAA
* * * * *
1697065 GTTTGTC-CATTAAATAAGACAAACGTGAATACTT-TTACTATTCCCCATTCTTTTCAAGATTAG
64 GTTTGTCTC-TTAAATAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATTAG
* * * * ** * * ** *
1697128 GAACTTTAAACATAGTCTTCTTACTAGTATACACGATATTGGGGCTTTGGATTCACAAGAAAGGT
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * * ** *
1697193 TTTTTTCCCACCAACTTTTGTAAATTCTAAGTTCGCACCTCAAATGAGCCGAAA-GTGGATTCTT
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCC-AAACGTGGATTCTA
* * *
1697257 GTATTT-ATCATCATTCATTTTGTGATTATGCACTATAAAAACATTCTCCTCATTAAGATTATTG
254 GT-TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* * * * * *
1697321 ATATTGATGATTTCCTTTTGCCTTGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAATTTT
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * **
1697386 ATCACATAAATATGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGAATGGGATTAA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
** *
1697451 AAAACACATTCCCTTCATTTGGATAC
448 AAAACACATTCTATTCATTAGGATAC
* ** * * * ** *
1697477 AAGACTTTGATGCTTTGGTGTCATAAGAAATG-CTTTCCTTTCCACCGTTTCCGTTAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT--TTTTCACCGTTTTTGATAGAATCAAA
* * * * * * * * *
1697541 ATTTGTCTCTTCAGTCAGACAAACATGAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTC-CCTTTC-TTTCAGGATTAGGC
* * * *
1697606 ACTTTAAACATAGTCTTCTCATTAGGATACATGATGTT-AGTGCTTTGGTTTGGCAAGAAAGG-T
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTTGCAAGAAAGGCT
* * * * *
1697669 TTTTATACCACCAAATTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
191 TTCT-TCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * * *
1697734 TATTGATCTTCATTTACTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTGAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * *
1697799 ACTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAAT-AAAGTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * **
1697863 CCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCATTATTGGGATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
*
1697928 AACACATTATATTCATTAGGATAC
450 AACACATTCTATTCATTAGGATAC
* * **
1697952 ATGACAGTGATGCTTTGGTATCATAAGAAAAG-CTTTTTTTGCACTATTTTTGATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * *
1698016 TTTGTCTCCTAAACT-TGACAAACATGAATACTT-ATACTATTCCCTATTCTTTTCAAGATTATG
65 TTTGTCTCTTAAA-TAAGGCAAACATGAATA-TTCATACTATTCCCT-TTC-TTTCAGGATTAGG
* * * * *
1698079 CTCTTTAAACATAGTCTTCTC-TCTAGGATACACGATATTGGTGTTTTCATTTTGCAAGAAGGGC
126 CACTTTAAACATAGTCTTCTCAT-TAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* ** * * *
1698143 TTTTTTCCCAAGAAATTTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATAT-T
190 TTTCTTCCC-ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGAT-TCT
* * *
1698207 AGTTTTGATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAATG
253 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* * * *
1698272 ATATTGATGATTTCCTTTTCCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAGGTTC
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * *
1698337 ATCCCCTAAATAAGCCGAGCATCGATTCTCGCAACAATCTACATTCATTTCAAGATTGGGACCCA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
*
1698402 AAAACACAATCCT-TTCATTAGGATAC
448 AAAACAC-ATTCTATTCATTAGGATAC
* * * * *
1698428 ATGGCATTGATGCTTTAGTGTCGCAAGAAATG-CTTTTCTTTCCACCGTTTTTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAAA
* * * * * * * * *
1698492 GTTTATCCCTTAAATAAGTCAACCATGAATACTCGTACTATTCTGCATTCTTT-TGTAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTC-CCTTTCTTTCAG--GATTAGG
* * * * * ** *
1698556 CATTTTAAAC-TGTGTCTTCTCGTTAGGATACACGAAATTGGTGCTTGGGTTTTGCAAGAACGGC
126 CACTTTAAACAT-AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* ** * *
1698620 TTTTTTCCCACCAATTTTTACAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * * *
1698685 TATTTG-TCTTCATTCATTTTGGGATTGGGCACTATAAAAACATTCTTCTTATTAAGATTATTGA
255 T-TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* ** * * *
1698749 TGTTGATGATTTTCTTTTGCATTCAAATCTTTTCTTTTG--ATGATTTTCCTTAAAATCAAGGTC
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCT-ATTTTCCTTAAAATCAAAGTT
* * * *
1698812 CATCCCCTAAATAAGCCAAGCATTGATTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCC
382 CATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCC
* **
1698877 AAAAACACAATCCCTTCATTAGGATAC
447 AAAAACACATTCTATTCATTAGGATAC
* * * * *
1698904 ATGGCATTGATGCTTTGGTGTCGCAAGAAATG-TTTTTCTTTCCACCGTTTTTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAAA
* * * * * * * *
1698968 GTTTATCCCTAAAATAAGTCAACCATGAATACTCATACTATTCCCCATTCTTT-TGTAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCCTTTCTTTCAG--GATTAGG
* * * * * * *
1699032 CATTTTAAAC-T-GTGTTCTCGTTATGG-TACACGACATTGGTGCTTTAGTTTTGCAAGAACGGC
126 CACTTTAAACATAGTCTTCTCATTA-GGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * * *
1699094 TTT-TT-CCACCAATTTTTGCAAAGTCAAAATTCATGCCTCAAATGAGCCGAACATGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * *
1699157 TTTTGTTCTTTATTCATTTTGTGATTAGGCTA-TATAAAAACATTCTCCTTATTAAGATTAATGA
255 TTTTGATCTTCATTCATTTTGTGATTAGGC-ACTATAAAAACATTCTCCTCATTAAGATTAATGA
* *
1699221 TATT-AGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTGAAATCAAAGTTC
319 TATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* *
1699285 ATCCCTTAAAGAAGACAAGCATCGATTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCCA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * ** *
1699350 AAACCACAATCGCTTCATTAAGATAC
448 AAAACACATTCTATTCATTAGGATAC
* * * *
1699376 ATGGCATTGATGCTTTGGTGTCGCAAGAAATG-CTTTTCTTTCCACCGTTTTTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAAA
* * * * * * * * *
1699440 GTTTATCCCTTAAATAAGTCAAACATGAATACTCGTACTATTCCCCATTCTTTTGAAGATTAGTC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCCTTTC-TTTCAGGATTAGGC
* * * * * *
1699505 ATTTTAGACAGT-GTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAACGGCT
127 ACTTTAAACA-TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * * * * *
1699569 TTTTTCTCACCAATTTTTGCAAAGTCAAATTTCGTGACTCAAATGAGCCAAACATGGATTCTAGT
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * * *
1699634 TTTGTTCTTTATTCATTTTGTGATTAGGCTCTATAAAAACATTCTCCTTATTAAGATTAATGATA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA
* * ** * *
1699699 TTGGTGATTCTCTTTTATATGGAAATCTTTTCTTT-CCCTATTTTTCTTGAAATCAAAGTTCATC
321 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
1699763 CCTTAAAGAAGATAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAAGATTAGGATCCAAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
*
1699828 ACACAGTCTATTCATTAGGATAC
451 ACACATTCTATTCATTAGGATAC
* * * *
1699851 ATGGCAGTTATGCTTTGGTGTCGCAAGAAAAGCATTTTTTTCACCGTTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * * *
1699916 TTGTCTCTTAAATAAGGCAAACAAGAATACTT-ACAGTATTCCCATTCTTTTCAGGATTAAGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATTCCCTTTC-TTTCAGGATTAGGCAC
* * * * * * *
1699980 TTTAAACATAGTCTTCTCACTATGATAAACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTT
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
** *
1700045 TTCCCAAGAAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTT
194 TTCCC-ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTT
* * * * *
1700110 TGATCTTAATTTATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTTATGATAGT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATT
** * * * *
1700175 GATGATTTTCTTTTGTGTTGAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCT
323 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * *
1700240 TTAAATAAGACAAGCATCGATTCTCGCAATAATCTCCATTGTTTTCAAGATTGGGATCAAAAAAC
388 TTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
**
1700305 ACATTCCCTTCATTAGGATAC
453 ACATTCTATTCATTAGGATAC
** * * * * * * *
1700326 ATGACTTTGATGCTTTGGGGCCGCAAGAAATG-CTTTCCTTTC-CTCTGTTTCTGATAAAATCAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT-TTTTCAC-C-GTTTTTGATAGAATCAA
* * * *
1700389 AGTTTGTCTCTTAAATCAA-ACAAACATGAATACTCATACTATTCTCCATTCTTTTCAAGATTAG
63 AGTTTGTCTCTTAAAT-AAGGCAAACATGAATATTCATACTATTC-CCTTTC-TTTCAGGATTAG
* * * * * * * **
1700453 ACACTTTAAACATAGTCTTCTCATTAGGATACACGATAGTGGTGCATTGGTTTCGTAAGAAAGAT
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * *
1700518 TTTTTTCCCACCAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* ** *
1700583 TTTTGATTTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTATTCTTTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * *
1700648 ATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-AAAGTCCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * ***
1700712 CCCTAAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCTTTATTGGGATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
1700777 AACACATTCTATTCATTAGGATAC
450 AACACATTCTATTCATTAGGATAC
* * ** *
1700801 AAGACAGTGATGCTTTGGTGTCATAAGAAAA-CCTTTTTTTGCACTTTTTTTTATAGAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * ** * *
1700865 TTTATCTCCTAAACT-TGAAAAACATGAATACTT-ATACTATTCCCCATTCTTTTCAAGATTCA-
65 TTTGTCTCTTAAA-TAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATT-AG
* * * * *
1700927 GCTCTTTAAACATAGTCTTCTCACTAGGATACACAATATTGGTGCTTTCGTTTCGCAAGAAAGGC
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * ** * * *
1700992 TTTTTTCCTAAAAAAATTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATAT-T
190 TTTCTTCC-CACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGAT-TCT
* * *
1701056 AGTTTTGATCGTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
253 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* * * *
1701121 ATATTGATGATCTTCTTTTCCATTGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTC
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
1701186 ATCCCTTAAATAAGACACGCATCGATTGC-CGTAACAATCTCCATTCTCGTAATGAGGAGAATGT
383 ATCCCTTAAATAAGACAAGCATCGATT-CTCGCAACAATCTCCATTCT--T-TTCA--AGATTG-
** * *
1701250 ATATTTTTCCAAAAATACATTTTATTCATTAGGATAC
441 GGA----TCCAAAAACACATTCTATTCATTAGGATAC
* *
1701287 ATGACAGTGATGCCTTGGTGTCACAAGAAAAG-CTTTTTTTCCACCGTTTTTGATAGAATCAACG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * * * * *
1701351 GTTGTCTCTTAAATAAGACAAACATGAATAGTCCTACTATTCCCCATTTTTTTCAAGATTCGACA
65 TTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCC-TTTCTTTCAGGATTAGGCA
* * * * * * * *
1701416 CGTTTAAACACAATCTTCTCACTAGGATACACGATATTGGTACTTTGGATTCGCAAG-AAGGACA
128 C-TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGG-C-
* * * * * * *
1701480 TTTC-TCCCACCAATTTTTATAAAGTCTAAGTTTGCGCCTCAAATAAGCTAAACATGGAATT-TA
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGG-ATTCTA
** * * *
1701543 GCATTGATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTGAGATTAATGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* ** * *
1701608 TATTGATGACTTTCTTTTGCATTAAAAAACTTTTCTTT-CCTCGATTTTCCTTAAAATCAAAGTT
319 TATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTT
* * *
1701672 CATCCCCTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGTTTGGGATCC
382 CATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCC
* *
1701737 AAAAACACATTATATTCATTAGAATAC
447 AAAAACACATTCTATTCATTAGGATAC
* * * ** * ** *
1701764 ATGAAAGTGAT-CATTTGGGGTCGCAAGAGCAG-CTTTCTTTCCACTATTTTTGATAGAATCAAG
1 ATGACAGTGATGC-TTTGGTGTCACAAGAAAAGCCTTT-TTTTCACCGTTTTTGATAGAATCAAA
* * * * *
1701827 GTTTGTCCCTTAAATAAGACAAACATGAAT-TCTTATACTATTCCCAATTTTTTTCAAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATAT-TCATACTATTCCC--TTTCTTTCAGGATTAGG
* * * * ** * * ** *
1701891 CACTTTAAACATAGTCTTCTTACTAGTATGCACGATATTGGGGCTTTGGATTCACCAGAAAGGCT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * * * ** * *
1701956 TTTTTCCCACCAACTTTTGTAAATTCTAAGTTCGCACCTCAAATGAGCCAAATGAGGATTCTAGT
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* * * *
1702021 ATTT-ATTTTCATTCATTTTGTGATTAGGCACTATATAAACATTTTCCTCATTAAGATTATTGAT
256 -TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* **
1702085 ATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* **
1702150 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTGGGATTAAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
** *
1702215 AACACATTCCCTTCATTTGGATAC
450 AACACATTCTATTCATTAGGATAC
* * ** * * *
1702239 AAGCCTTTGATGCTTTGGTGTCACAAGAAATG-CTTTCCTTTCCACCGTTTCTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT--TTTTCACCGTTTTTGATAGAATCAAA
* * * * * * *
1702303 GTTTGTCTCTTAAGTCAGACAAACATGAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTC-CCTTTC-TTTCAGGATTAGGC
* * * *
1702368 ACTTTAAACATAGTCTTCTCATTAGGATACATGATGTTCG-TGCTTTGGTTTCGCAAGAAAGG-T
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATT-GATGCTTTCGTTTTGCAAGAAAGGCT
* * * * *
1702431 TTTTATACCACCAATTTTTCTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
191 TTCT-TCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * *
1702496 TATTGATCTTCATTCACTTTGTGATTAGG--C-A-AAAAACATTCTCCTCATTAAGATTAACGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * * *
1702557 ATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAACCAAAGTTCAT
320 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * *** * *
1702622 CCCTTAAATAAGAGAAGCATCTATTCTTATAACAATCTCCATTCTTTCCAAGTTTGGGATCCAAA
385 CCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
1702687 AACACATTCTATTCATTA-GA-AC
450 AACACATTCTATTCATTAGGATAC
* * * * * * **
1702709 GTAGGACAGTTATGATTTGGTGTCATAAGAAAAGCTTTTTTTTTACTATTTTTGATAGAATC-AA
1 --ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAA
* * * * * *
1702773 GTTTGTCTCTTAAGTAAGACAAACATGTATACTT-ATACTATTCCCCATTCTTTTAAAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATTAGG
* * * * ** *
1702837 CACTTTAAACATAGTCTTCTCACTAGGATACACGATATTGGTGCTTTAGATTCACAAGAAATGCT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * * * ** *
1702902 TTTTTCCCACCAATTTTTGTAAATTCTATG-TCAGCACCTTAAATGAGCCAAACGTGGATTCTAG
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTC-GTGCCTCAAATGAGCCAAACGTGGATTCTAG
* *
1702966 TATTT-AT-TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCCCCTCATTAAGATTATTGA
255 T-TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
** *
1703029 TATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAACGTTCA
319 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * *
1703094 TCCCCTAAATATGCCAAGCATCGATTCTCACAACAATCTCCATTCATTTCAAGATTGGGATCCAA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* **
1703159 AAACACAATCCCTTCATTAGGATAC
449 AAACACATTCTATTCATTAGGATAC
* * * * *
1703184 ATGGCATTGATGCTTTGGTGTCGCAAGAAATG-CTTTTCTTTGCACCGTTTTTTATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAAA
** * * * * * *
1703248 GTTTACCCCTTAAATAAGTCAACCATG-ATACTCATACTATTCCCCATTCTTT-TGTAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCCTTTCTTTCAG--GATTAGG
* * ** * * * * * *
1703311 CATTTTAAATAGT-GTCTTCTTGTTAGGATATA-GATATTGGTGCTTTGGTTTTACAAGAACGAC
126 CACTTTAAACA-TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* * * * * ** *
1703374 TTTTTTCCCTCCAATTTTTGCAATGTCAAAATTCGTGCCTCAAAACAGCCAAACCTGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * *
1703439 TTTTGTTCTTTATTCATTTTGTGATTAGGCTCTATAAAAACATTCTCCTTATTAAGA-TAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* *
1703503 ATT-AGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTGAAATCAAAGTTCA
320 ATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * ** *
1703567 TCCCCTAAAGAAGGCAAGCATCGATTCTCGCAACAATCTCCACCCATTTCAAGATTGGGATCCAA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* ** * *
1703632 AAACACAATCCCTTTATTATGATAC
449 AAACACATTCTATTCATTAGGATAC
* * * * * *
1703657 ATGGCATTGATGCTTTGGTGTCGCAAGAAATG-CTTTTCTTTATATCGTTTTTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTT-TTT-CACCGTTTTTGATAGAATCAAA
* * * ** * * * * * *
1703721 GTTTATCCCTTAAATAAGTCAAACGCGAATACTCGTACTCTTCCCCATTCTTTTGAAGATTAGGC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATT-CCCTTTC-TTTCAGGATTAGGC
* * * * * *
1703786 ATTTTAAACAGT-GTCTTCGCATTAGGATACACAATATTGGTGC-TTCGGTTTTGCAAGAACGAC
127 ACTTTAAACA-TAGTCTTCTCATTAGGATACACGATATTGATGCTTTC-GTTTTGCAAGAAAGGC
* * ** *
1703849 TTTTTTCCCACCAATTTTTGCAAAGTCAAAGTTAATGCCTCAAATGAGCCAAACATGGATTCTAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
* * * * *
1703914 TTCTGTTCTTTATTCATTTTGTGATTAGGCTCTAT-AAAACATTCTCCTTATTAAGATTAATGAT
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGAT
* * * *
1703978 ATT-AGTGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTGTTTTTCTTGAAATCAAAGTTCA
320 ATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * *
1704042 TCCCTTAAAGAAGAGAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAAGA-TGTGGATCCA
384 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTG-GGATCCA
1704106 AAAACACATTCTATTCATTAGGATAC
448 AAAACACATTCTATTCATTAGGATAC
* * * * * *
1704132 ATGGCAGTTATACTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCATTTTTGATAGAATCAAAGT
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
* * * *
1704197 TTGTCTCTTAAATAAGGCAAACAAGAATACTT-ATAGTATTCCCATTCTTTTCAGGATTAAGCAC
66 TTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATTCCCTTTC-TTTCAGGATTAGGCAC
* * * * * * *
1704261 TTTAAACATAGTCTTCTCACTATGATAAACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTT
129 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTC
* ** * * *
1704326 TTCTCAAGAAAATTTTGTAAAGTCAAAATTCGTACCTCAAATGAGCCAAACGTGGATTCTAGTTT
194 TTC-CCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTT
* * * * *
1704391 TGATCTTAATTCATTTTGTGACTAGGCACAATAAAAACATTCTCCTCATTAAGATTTATGATAGT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATT
* * *
1704456 GATGATTTTCTTTT--ATGTTGAAATCTTTTCATCGCCCTATTTTCCTAAAAATCAAAGTTCATC
323 GATGATTTTCTTTTGCATG--GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* ** * *
1704519 CCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATGGTTTTGAAGATTGGGATCAAAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
**
1704584 ACACATTCCCTTCATTAGGATAC
451 ACACATTCTATTCATTAGGATAC
** * * * * **
1704607 ATGACTTTGATGCTTTGGTGCCGCAAGAAATG-CTTTCCTTTCCACCGTTTCAGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT--TTTTCACCGTTTTTGATAGAATCAAA
* * * * * *
1704671 GTTTGTCTCTTAAATCAA-ACAAACATGAACACTCGTACTATTCTCCATTCTTTTCAAGATTAGG
64 GTTTGTCTCTTAAAT-AAGGCAAACATGAATATTCATACTATTC-CCTTTC-TTTCAGGATTAGG
* * * * * * *
1704735 CACTTTAAACATAGTCTTCTCCTTAGGATACACGATATTGGTGCATTAGTTTCGTAAGAAAGGTT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
* * * * * * * *
1704800 TTTTTCTCACTAATTTTTGTAAGGTCAAAATTTGTGCCTCAAATGAGCCTAACGTGGATACTAGT
191 TTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
* *
1704865 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAATGATA
256 TTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA
* * *
1704930 TTGATGGTTTTCTTTTGCTTGGAAATCTTTTCTTTGCCTTA-TTTCCTTAAAAT-AAAGTTCATC
321 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * **
1704993 CCTAAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCATTATTGGGATCCAAAA
386 CCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
*
1705058 ACACATTCTATTCATTAGGGTAC
451 ACACATTCTATTCATTAGGATAC
* * * * * *
1705081 ATGATAGTGATGCTTTGGTGACATAAGAAAAG-CTTTTTTTGCACTGTTTTTGGTAAAATCAAAG
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAAAG
* * * * * *
1705145 TTTGTCTCCTGAACT-TGACAAACATGAATACTT-ATACTATTCCCTATTCTTTTCAAGATTAAG
65 TTTGTCT-CTTAAATAAGGCAAACATGAATA-TTCATACTATTCCCT-TTC-TTTCAGGATTAGG
* * * *
1705208 CACTTTAAACATAGTCTTCTCACTAGGATACACGATTTTGGTGCTTTCGTTTCGCAAGAAAGGCT
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCT
** * *
1705273 TT-TGTCCCAAGAAATTTTTGTAAGGTCAAATTTCGTGCCTCAAATGAGCCAAACGTGGATAT-T
191 TTCT-TCCC-ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGAT-TCT
* * * * *
1705336 AGTTTTGATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCTTTAGGATTAACG
253 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* * *
1705401 ATATTGATGATTTT-TTTTTCATTGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * ** * *
1705465 ATCCCTTAAATAGGACAAGCATCGATTCTCGTAACAATCTCCATTCTCGTAATGAGAAGAAT-GT
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCT--T--T-TCAAGATTGGG
* * *
1705529 ATTTTCTCCAAAAATACATTTTATTCGTTAGGATAC
443 A-----TCCAAAAACACATTCTATTCATTAGGATAC
*
1705565 ATGACACAGTGATGCCTTGGTGTCACAAGAAAAG-CTTTTTTTCCACCGTTTTTGATAGAATCAA
1 ATG--ACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTT-CACCGTTTTTGATAGAATCAA
* * * * * * *
1705629 CAG-TTGTCACTTAAATAAGACAAACCT-AAGTAGTCATACTATTCCCCATTTTTTTCAAGATTC
63 -AGTTTGTCTCTTAAATAAGGCAAACATGAA-TATTCATACTATT-CCC-TTTCTTTCAGGATTA
* * *
1705692 GGCACTTTAAACATAGTCTTCTCACTAGGATACGCGATATTG--G---T-GCTTTG---G--A--
124 GGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGG
* * * *
1705744 -----TT--CA-CAA-----G-AAAGTCTAAGTTCGCGCCTCAAATCAGCCAAACATGGAGTT-T
189 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGA-TTCT
* ** * * * *
1705794 TGCGTTGATTTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTGAGATTAAAG
253 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
* * *
1705859 ATATTGATGATTTTCTTTTGCATTGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTG
318 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * *
1705924 ATCCCCTAAATAAGTCAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGTTTGGGATCCA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* *
1705989 AAAACACATTCTATTCCTTAGAATAC
448 AAAACACATTCTATTCATTAGGATAC
* ** * * **
1706015 ATGAAAGTGAT-CGTTTGGTGTCGTAAGAGAAG-CTTTCTTTCCACTATTTTTGATAGAATCAAA
1 ATGACAGTGATGC-TTTGGTGTCACAAGAAAAGCCTTT-TTTTCACCGTTTTTGATAGAATCAAA
* * *
1706078 GTTTGTCTCTTAAATAAGACAAACATGAATACTT-ATACTATTCCCCATTCTTTTCAAGATTAGG
64 GTTTGTCTCTTAAATAAGGCAAACATGAATA-TTCATACTATT-CCCTTTC-TTTCAGGATTAGG
* * * * ** * * ** *
1706142 CACTTTAAACATAGTCTTCTTACTAGGATACACAATAGTGGGGCTTTGGATTCCCAAGATAGGCA
126 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC-
* * * * *
1706207 TTT-TTGCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAATTAGCCAAACGTGGATTCCAG
190 TTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAG
*
1706271 TTTTGATCTTCGTTCATTTTGTGATTAGGCACTATAAAAACATTCTCC-CTATTAAGATTAATGA
255 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-ATTAAGATTAATGA
*
1706335 TATTGATGATTTTCTTTTGCA-GTGAAATCATTTT-TTTGCCATATTTTCCTTAAAATCAAAGTT
319 TATTGATGATTTTCTTTTGCATG-GAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * *
1706398 TATTCCC-TAAATAGGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC
382 CA-TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATC
** * *
1706462 CAAAAACACATTCCCTTCATTGGGGTAC
446 CAAAAACACATTCTATTCATTAGGATAC
* * ** * * *
1706490 ATGGCATTGATGCTTTGGTGTTGCAAGAAATG-CTTGTCTTTTCACCATTTTCTCATAGAATCAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTT-T-TTTTCACCGTTTT-TGATAGAATCAA
* ** * * * **
1706554 AGTTTCTCTCTTAAATAATACAAACATTAATGCTT-ATACTATTCCCCATTCTTTTCAACATTAG
63 AGTTTGTCTCTTAAATAAGGCAAACATGAAT-ATTCATACTATT-CCCTTTC-TTTCAGGATTAG
* * * * * * *
1706618 GCACTTTAAACATAGTCTTCTCACTATGACACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGT
125 GCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGC
* ** * * * * *
1706683 TTTTTTCCCAAGAAATTTTTGTAAAGCCAAAATTCGTGCCTTAAATGATCCAAACGTGGATTCCA
190 TTTCTTCCC-ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* *
1706748 GTTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCTTCATTAAGATTAATGA
254 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
* ** *
1706813 -AGTTAATGATTTTCTTTTGTGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
319 TA-TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * **
1706877 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCACCATTGTTTTCAAGATTGGGATTAA
383 ATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCA
** * * *
1706942 AAAACACATTCCCTTTATTTGGATAA
448 AAAACACATTCTATTCATTAGGATAC
* ** * * * * *
1706968 AAGACTTTGATGCTTTGGTGTCGCAAGAAATG-CTTTCCTTTCTACCATTTCTGATAGAATCAAA
1 ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTT-TTTTC-ACCGTTTTTGATAGAATCAAA
* * * * * * * * *
1707032 GTTTGTCTATTAAGTCAGACAAACATGAATACTCAAACTAATCTCCATTCCTTTCAAGATTAGGC
64 GTTTGTCTCTTAAATAAGGCAAACATGAATATTCATACT-AT-TCCCTTTCTTTCAGGATTAGGC
* * * * * * * *
1707097 ACTTTAAACATAGTCTTCTCATTAGGACACATGATGTCGGTGCTTTGGTTTCGCAAGAAA-GTTT
127 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTT
* * * *
1707161 TTTATACCACCAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
192 TCT-TCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
*
1707226 ATTGATCTTCATTCACTTTT-TGATTAGGCACTATAAAAACATTCTCCT
256 TTTGATCTTCATTCA-TTTTGTGATTAGGCACTATAAAAACATTCTCCT
1707274 TGTAGACACT
Statistics
Matches: 29736, Mismatches: 5580, Indels: 3769
0.76 0.14 0.10
Matches are distributed among these distances:
447 5 0.00
448 129 0.00
449 6 0.00
450 30 0.00
452 2 0.00
453 5 0.00
454 8 0.00
455 8 0.00
456 7 0.00
457 12 0.00
458 117 0.00
459 96 0.00
460 3 0.00
461 133 0.00
462 237 0.01
463 328 0.01
464 48 0.00
465 14 0.00
466 27 0.00
467 23 0.00
468 180 0.01
469 413 0.01
470 361 0.01
471 148 0.00
472 1386 0.05
473 3075 0.10
474 5686 0.19
475 6818 0.23
476 4825 0.16
477 1856 0.06
478 395 0.01
479 34 0.00
480 17 0.00
481 18 0.00
482 20 0.00
483 10 0.00
484 58 0.00
485 356 0.01
486 471 0.02
487 174 0.01
488 20 0.00
489 6 0.00
490 4 0.00
491 2 0.00
492 7 0.00
493 15 0.00
494 15 0.00
495 12 0.00
496 21 0.00
497 10 0.00
498 22 0.00
499 118 0.00
500 132 0.00
501 13 0.00
502 31 0.00
503 40 0.00
504 53 0.00
505 56 0.00
506 63 0.00
507 61 0.00
508 44 0.00
509 40 0.00
510 57 0.00
511 49 0.00
512 46 0.00
513 53 0.00
514 63 0.00
515 43 0.00
516 25 0.00
517 21 0.00
518 27 0.00
519 46 0.00
520 43 0.00
521 17 0.00
522 20 0.00
523 15 0.00
524 15 0.00
525 15 0.00
526 31 0.00
527 21 0.00
528 10 0.00
529 26 0.00
530 33 0.00
531 19 0.00
532 13 0.00
533 20 0.00
534 24 0.00
535 25 0.00
536 13 0.00
537 9 0.00
538 13 0.00
539 16 0.00
540 24 0.00
541 17 0.00
542 25 0.00
543 26 0.00
544 18 0.00
545 25 0.00
546 38 0.00
547 31 0.00
548 32 0.00
549 28 0.00
550 38 0.00
551 46 0.00
552 23 0.00
553 23 0.00
554 20 0.00
555 35 0.00
556 37 0.00
557 53 0.00
558 12 0.00
559 3 0.00
561 2 0.00
562 5 0.00
563 3 0.00
564 2 0.00
565 1 0.00
567 5 0.00
569 1 0.00
570 6 0.00
571 3 0.00
572 1 0.00
573 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
ATGACAGTGATGCTTTGGTGTCACAAGAAAAGCCTTTTTTTCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGGCAAACATGAATATTCATACTATTCCCTTTCTTTCAGGATTAGGCACTT
TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGCTTTCTT
CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA
TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGAT
GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
AATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACA
TTCTATTCATTAGGATAC
Found at i:1675644 original size:115 final size:115
Alignment explanation
Indices: 1675439--1675659 Score: 300
Period size: 115 Copynumber: 1.9 Consensus size: 115
1675429 GTCTTCTGTA
* * *
1675439 AGGATACATGATATTAATCCTTTCATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTAATCCTTTCATTTCACAAGAAAGGATTTATTCCCACCAATTTTTGTAAAG
* * *
1675504 TCTAAGTTCGTGCCTTCATTAAGCCAAACGTGGACTCTAGTCTTCTCATT
66 TCAAAGTTCATGCCTTCATTAAGCCAAACATGGACTCTAGTCTTCTCATT
* * * **
1675554 AGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGATTTATTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTAATCCTTTCATTTCACAAGAAAGGATTTATTCCCACCAATTTTTGTAAAG
* * *
1675619 TCAAAGTTCATGTC-TCAATTGAGCCAAACATGGATTCTAGT
66 TCAAAGTTCATGCCTTC-ATTAAGCCAAACATGGACTCTAGT
1675660 TTTGATCTTC
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
114 2 0.02
115 89 0.98
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (115 bp):
AGGATACACGATATTAATCCTTTCATTTCACAAGAAAGGATTTATTCCCACCAATTTTTGTAAAG
TCAAAGTTCATGCCTTCATTAAGCCAAACATGGACTCTAGTCTTCTCATT
Found at i:1676665 original size:115 final size:114
Alignment explanation
Indices: 1676487--1676719 Score: 315
Period size: 115 Copynumber: 2.0 Consensus size: 114
1676477 ACTATAAATG
* * *
1676487 TAGTCTTCTATAAGGATACATGATATTAATCCTTTCATTTCACAAGAAAGGCTTTCTTCCCACCA
1 TAGTCTTCTATAAGGATACACGATATTAATCCTTTCATTTCACAAGAAAGGATTTATTCCCACCA
* **
1676552 ATTTTTGTAAAGTCTAAGTTCGTGCCTTCAA-TAAGCCAAACGTGGATTC
66 ATTTTTGTAAAGTCAAAGTTCGTGCC-TCAATTAAGCCAAACACGGATTC
* * * * **
1676601 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGATTTATTCCCACC
1 TAGTCTTCT-ATAAGGATACACGATATTAATCCTTTCATTTCACAAGAAAGGATTTATTCCCACC
* *
1676666 AATTTTTGTAAAGTCAAAGTTCGTGTCTCAATTGAGCCAAACACGGATTC
65 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTAAGCCAAACACGGATTC
1676716 TAGT
1 TAGT
1676720 TTTGATCTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
114 13 0.13
115 90 0.87
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (114 bp):
TAGTCTTCTATAAGGATACACGATATTAATCCTTTCATTTCACAAGAAAGGATTTATTCCCACCA
ATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTAAGCCAAACACGGATTC
Found at i:1678764 original size:474 final size:475
Alignment explanation
Indices: 1676601--1707273 Score: 19762
Period size: 474 Copynumber: 64.4 Consensus size: 475
1676591 ACGTGGATTC
* * *
1676601 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTTGCAAGAAAGGATTTATTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * ** *
1676666 AATTTTTGTAAAGTCAAAGTTCGTGTCTCAATTGAGCCAAACACGGATTCTAGTTTTGATCTTTA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * *
1676731 TTCATTCTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATTATATTGATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* ** * * * * *
1676796 CTTTTGCGTTAAAATCTTTTCCTTACCCTATTTTCTTTAAAATCAAAGTTCAAT-TCTTCAATAA
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC-ATCCCTTAAATAA
* * * *
1676860 GACAAGCATCAATTCTCGCAACAATCTCCATTATTTTCAAGATTGGGATCCAAAAACACATTCTC
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTC
* ** ** * *
1676925 -TTCTTTAGGATACATGACTTTGATGCTTTGGTGGGGCAA-AAAATGCATTTCTTTCCACCGATT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA-GCTTTTTTTTCCACCGATT
** * * * ** **
1676988 TCAATAGAATCAAAGTTTGTCCCTTAAATCAGAAAAACATGAATACTTGTACTACTCGCCATTCT
388 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA-TTTCCATTCT
1677053 TTTCAAGATTAGGCACTTTAAACA
452 TTTCAAGATTAGGCACTTTAAACA
* * * * * * * * *
1677077 TTGTTTTCTCTTTAGGATACACGATATTGGA-GTTTTGGTTTTGCAGGAAAGGTTTTTTTCCCAC
1 TAGTCTTCTCATTAGGATACACGATATT-GATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * ** *
1677141 CAATTTTGGT-AAGTGAAAATTCGTGCCTCAAACGAGCCAAACGTGGATTCTAGATTTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* *
1677205 ATTCATTTTGTGATTAGGCACTAT-AAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* ** *
1677269 TCTTTTGCATGGAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAACCTCATCCCATAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
1677334 GACAAGCATCGATTCTTGTAACAATCTTCATTCTTTTCAAGATTGGGATCCTAAAACACATTCT-
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTC
* * * * * * **
1677398 ATTAATTAGGATACAAGACTGAGATGCTTTGGGGTCGCAAGAAAATCTTTTTTTT-TGCC-ATTT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-TT
* ** * * * *
1677461 TTGATAGAATCAAAGTTTGTCTCTTAAGTTGGACAAAAATGAATAGTCATACTAATCCTCATT-T
388 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTC-CATTCT
** * **
1677525 TTTCGGGATTAGGCACTATAAATG
452 TTTCAAGATTAGGCACTTTAAACA
* * * * * *
1677549 CAGTCTTCT--GTATGGATACATGATATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCTAC
1 TAGTCTTCTCATTA-GGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * *
1677612 CAATTTTTGTAAATTCAAAGTTCGTGCCTTC-AATAAACCAAACGAGGATTCTAGTTTTGATCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCC-TCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTT
* * * *
1677676 CATTCATTTTGGGATTAGGCGCTATAAAAACATTCTCCTCATTAAGATTAATGATAATGGTGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * * *
1677741 TTCTTTCGCATGGAAATCTTTTCTTTACCGTATTTTTCTTAAAATCCAAGTTCATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * *
1677806 AGACAAGCATCGATTCTCGTATCAATCTCTATTCTGTTCAAGATTGGGATCCAAAGACACATTCT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA-ACACATT-T
* * *
1677871 AT-TTTCATTAGGATACATCG-CAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTT-CATCG
322 -TCATTCATTAGGATACAT-GACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCG
* *
1677933 -TTTGTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCTTACTA-TTCCTC
385 ATTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTCC-A
* * *
1677996 TTTTCTTTCAAGATTAGACACTTTGAACA
448 TTCT-TTTCAAGATTAGGCACTTTAAACA
* * * *
1678025 TAGTCTTCTTC-TTAGAATACACGATATTGATGCTATCGTTTCACAAGAAAGGATTTCTTCCCAC
1 TAGTCTTC-TCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * *
1678089 CAATTTTTTTAAAGTCAAAGTTCATGCCTC-AATCGAGCCAAACATGGATTCTAGTTTTGATCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAAT-AAGCCAAACGTGGATTCTAGTTTTGATCTT
* * **
1678153 CATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAACAATATTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * * * *
1678218 TTCTTTTACGTTGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTTAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * *
1678283 GGACAAGCATCAATTCTCGCAACAATCTCTATTCTTTTCAAGATTGGGATCCAAAA-ATATTTTT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAACACA-TTTT
* * * ** * * *
1678347 CCTTCACTAGGATACATCACTTTGATGCTTTGGTGTCGCAA-AAAATGCATTTCTTTCGACCGAT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA-GCTTTTTTTTCCACCGAT
* * * * ** **
1678411 TTCGATAGAATCAAAGTTTGTCCCTTAAATTAGACAAACATGAATGCTTTTACTATTTGTTATTC
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTT-CCATTC
*
1678476 TTTTCCAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * * * **
1678501 TAGTCTTCTCTTTAGGATACACGATATT-AGTGCTTTGGTTTTGCAGGGAAGGTTTTATTCCTGC
1 TAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * * * *
1678565 CAATTTTTGT-AAGTGAAAATTCGTGCTTCAAATGAGCCTAACGTGGATTATAATTTTTATCTTG
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * ** * *
1678629 ATTTA-TTTGTGAGTAGGCACTATAAAAACATTCTCCTTTTTAAGATTAGTGATATTAATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * *
1678693 TCTTTTGCATGGAAATCTTTTCTTTGCTCTGTTTTCCTTAAAATCAAAGTTCATCCCATAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
** * *
1678758 GACAAGCATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGATCCTAAAACACATTCT-
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTC
* * *
1678822 ACTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTT-CATC-ATTT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-TT
* * * *
1678885 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAATGAATAGTCATACTAATCTCCATTTT
388 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTCT
** ** *
1678950 TTTCGGGATTAGGCACCATAAATA
452 TTTCAAGATTAGGCACTTTAAACA
* * * **
1678974 TAGTCTTCT-ATAAGGATACATGATATTGAAGCTTTCGTTTCAAAAGAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
*
1679038 AATTTTTGTAAAGTCAAAGTTCGTGCCTAAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * *
1679103 TTCATTTTGGGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAACGATATTGGTGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* *
1679168 CTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* ** *
1679233 ACAAGTATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* * *
1679297 CTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTT-CATC-ATTTT
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-TTT
* * * *
1679360 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAATGAATAGTCATACTAATCTCCATTTTT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTCTT
** ** *
1679425 TTCGGGATTAGGCACCATAAATA
453 TTCAAGATTAGGCACTTTAAACA
* * * *
1679448 TAGTCTTCT-ATAAGGATACATGATATTGAAGCTTTCGTTTCACAAGAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* *
1679512 AATTTTTGTAAAGTCAAAGTTTGTGCCTAAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * * * * *
1679577 TTCATTTTGGGATTAGGCACTATAAAAACATTCTCCACTTTAAGATTAACGACATTGGTGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* *
1679642 CTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * *
1679707 ACAAGCATCGATTCTTGAAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* * * * *
1679771 TTCATCAGGATACATGAGAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATCGTTTTT
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTTT
* * ** * * * *
1679836 GATAAAATCAATGTTCATCTCTTAAACAAGACAAACATGAATACTCTTACTATTCCTCATTCCTT
390 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTC-CATTCTTT
*
1679901 TCAGGATTAGGCACTTTAAACA
454 TCAAGATTAGGCACTTTAAACA
* * * * * *
1679923 CAGTCTTCTCGTAAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGGATTACTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * *
1679988 AATTTTTGTGAAGTCAAAATTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGGTCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * ** *
1680053 TTCATTTTGTGATTATGTAGAATAAAAACATTCTCCTCATTAAGATTAATGACATTGATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * *
1680118 CTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATGAAAGTTCATCTCC-TAAATAA
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAA
* * * * *
1680182 GATAAGAATCGGTTCTCGCAACAATCTCCA--CTATTTCAAGATTGGGATCCAAAAACACA-TTC
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGATCC-AAAACACATTTT
* ** * *
1680244 CTTTCATTAGGATACATGACTTTGATGCTTTGGTGTCGCAA-AAATG-TATTTCTTTCCACCGAT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTTTTTCCACCGAT
* * *
1680307 TTTGATAGAATCAAAGTTTGTCCCTTAAATCAGACAAACATGAATACT-TTCACTATTTGCCATT
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-ACTATTT-CCATT
1680371 CTTTTCAAGATTAGGCACTTTAAACA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1680397 TAGTCTTATCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAAAGG-TGTTTTTCCCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCT-TTCTTCCCAC
* * * * * *
1680461 CAATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCGAATGTGGATTCTAGATTTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
** * * * *
1680525 GCTCTTTTTGTGATTAGGCACTATAAAAACATTCTTCTCTTTAAGATTAATGATATTAATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * * **
1680590 TCTTTCGCACGAAAATCTTTTAATTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAGAATA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA-AATA
* * *
1680654 AGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGATCCTAAAACACATTCT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTT
* * * * *
1680719 -ATTAATTACGATACAAGACAGTGATGCATTGGTGTCGCAAGAAAAG-TTTTTTTTTCACC-ATT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-T
* * * * * *
1680781 TTTGGTAGATTCAAAGTTTGTCTCTTAAAAAAAAC-AACAATGAATAGTCATACTAATCTCCATT
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTCATACT-ATTTCCATT
** * **
1680845 C-TTTCGGGATTAGGCACTATAAATG
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * *
1680870 CAGTCTTCT-GTAAGGATACATGATATTGATGCTTTCGTTTCACAAGAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * *
1680934 AATTATTGTAAAGTCAAAGTTCGCGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * * * *
1680999 TTCATTTTGGGATTAGGCGCTATAAAAACATTTTCCTCATTAAGATTAATGATAATGGTGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
** * *
1681064 CTTTCACATTGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * *
1681129 ACAAGCATCAATTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* * * *
1681193 TTCATTAGGATCCATGGCAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTT-CATCG-TTTA
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT-
** * * *
1681256 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTTTCCTATTCCTCATTCCT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTC-CATTCTT
* *
1681321 TTCAGGATTAGGCAATTTAAACA
453 TTCAAGATTAGGCACTTTAAACA
* * * * *
1681344 TAGTCTTCTCGTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTCCTTCCCGCC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * *
1681409 AATTTTTGTAAAGTCAAAGTTCGTGCTTCAATTAAGCCAAACATGGATTCTAGATTTGGTCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * *
1681474 TTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGACATTGATGACTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * *
1681539 CTTTTGCGTTTGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAGTTCATCCCTTAAAAAA
196 CTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
1681604 GACAAGGATCTG-TTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCCAAAA-AC-TCTTT
260 GACAAGCATC-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAACACAT-TTT
* * ** * * * *
1681666 CCCTTCATTCGGATACATGACTTTGATGATTTGGTGTCGTAA-AAAATGCATTTCTTTCCACCGA
323 -CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA-GCTTTTTTTTCCACCGA
* * * * ** * *
1681730 TTTCGATAGAATCAAAGTTTGTCCCTTAATTCAGACAAACATGAATACTTGTACCATTCGCCATT
386 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATT
*
1681795 CTTTTCAAGATTAGGCACTTTAAAAA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1681821 TAGTTTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * *
1681886 AATTTTTGT-AAGTGAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGATTTGATCTTAA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * * *
1681950 TTCATTTTGTCATTAGGCACTATAAACACATTCTCCTCCTTAAGATTAATGATATTAATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * *
1682015 CTTTTGCTTGAAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *
1682080 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* *
1682144 TTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTT-CGCC-ATTTT
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-TTT
* * * *
1682207 TGATAGAATCAAAGTTTATCTCTTAAATAAGATAAACATGAATAGTCATACTAATCTCCATT-TT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTCTT
* ** **
1682271 TTCAGGATTAGGCACCATAAATG
453 TTCAAGATTAGGCACTTTAAACA
* * * * ** * *
1682294 TAGTCTTCTCGTAAGGATACACAATATTGATGCTTTTGTTTCATAAGAAAGGCTTTCCTCCTACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * *
1682359 AATTTTTGTAAAGTCAAAGTCCGTGCC-CTAAGTAAGCCAAATGTGG-TATCTAGTTTTGATCTT
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTC-AAATAAGCCAAACGTGGAT-TCTAGTTTTGATCTT
* * *
1682422 CATTCTTTTTGTGATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTGGTGAAT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATG-AT
* * *
1682487 TTT-TTTTGCATGGAAATATTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCGCTTAAAT
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * * *
1682551 AAGACAAACATCGATTCTTGTAACAATCTCCATCCTTTCCAAGATTGGGATCTAAAAACACATTC
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC-CAAAACACATTT
* * * *
1682616 T-ATTCAATAGAATACATGACAGTGATGCTTTGGTGTCCCAAGAAAAGC-TTTTTTTCCACCGCT
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * * * *
1682679 TTTGACAGAATCAAAGTTTGTCTCTTAAACAAGACAAACATGAATACTTATACTATTCCCCTATC
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTCCAT-TC
1682744 TTTTCAAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * * *
1682769 TAGTCTTCTCACTATGATACACGATATTGATGCTTTAGTTTCGTAAGAAAGGCTTTTTTCTCAAG
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTC-CCAC
* * * ** * *
1682834 AAATTTTTGTAAAGTCAAAGTTCGTACCCCAAGCAAGCCAAATGTGGATTCTAGTTTTGATATTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * * * * *
1682899 ATTCCTTTTGTGATTACGCACAATAAAAACATTCTTCCTCAATAAGATTAATGAAATTGGTGATT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTC-TCCTCATTAAGATTAATGATATTGATGATT
* *
1682964 TTCTTTCGCATGGAAATATTTTCTTT-CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * *
1683028 AGACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGATCCAAAAGCACATTCT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA-CACATTTT
* * * * *
1683093 -ATTAATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAG--TTTTTTTCTATCGTTT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* * * *
1683155 TTTATACAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATATCCATT-T
388 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTCT
** ** **
1683219 TTTCGGGATTAGGCACCATAATTA
452 TTTCAAGATTAGGCACTTTAAACA
* * * * **
1683243 TAGTCTTCT-ATAAGGATACATGATATTGATACTTTCTTTTCATAAGAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * *
1683307 AATTTTTGTAAAGTAAAAGTTCATGCCTTAAATTAGCCAAACGTGGATTTTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * *
1683372 TTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATG-TATTGATGATTTA
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
*
1683436 CTTTT--ATAGTGAAAT-TTTT-TTTGCCTCT-TTTTCCTTAAAATCAAAGTTTATCCCTTAAAT
196 CTTTTGCAT-G-GAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
** * * * *
1683496 AAGATGACCATCGATTCTCGTAACAAACTCCATTCTTTTCAAGATTGGCATCCAAAAACACATTC
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTT
* * *
1683561 T-ATTCTTTACGG-TACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCATCGT
322 TCATTCATTA-GGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA
* * * *
1683623 TTTTGATA-AAGTCAAAGTTTG-CTCTTAAATAAGGCAAACATGAATAGTCATGCTAATCTCC-T
386 TTTTGATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCAT
* * * * ** **
1683685 TTTTTTCAGGACTAGGAACCATAAATG
449 TCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * ** * * * *
1683712 TAGTCTTCTCGTAAGGATACACGACAGTGATGCTTTGGTGTCATAAGAAAAGCTTTTTTTCCATC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * * * * * *
1683777 -GTATTTGATAAAATCAAAGCTT-GT-CTCTTAAATGAGACAAACATGAATACTCCTACTATT--
66 AATTTTTG-TAAAGTCAAAG-TTCGTGC-CTCAAATAAGCCAAACGTGGAT--T-CTAGTTTTGA
* * ** * ** * ** * * *
1683837 CCAT-ATTC-TTTTCAAGATTAGGCACTTTAAGCATAGGCTTCTC-GTAAGGA-TACACGATATT
125 TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAA-GATTA-ATGATATT
* * * * *** ** * ** * * *
1683898 AATG-CTTTCATTTCGCA-AGAAAGGATTTCTTCCCACCAATTTT-GGTAAAGTCAAAGTTCGTG
187 GATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * * * * **** * ** ** *
1683960 TCTCAAATGAGCCAAACGT-GCATACTAGTTTTGATCTTCATTCATTTT-GTGATTCGACACTCT
250 CCTTAAATAAGACAAGCATCG-ATTCTCGTAACAATCTCCATTC-TTTTCAAGATT-GGGA-TCC
* * * * * * ** * * * *
1684023 AAAA-ACATTCTC-TTCTTTAAGATTA-ATGATATTGATGATTTTCTTTTGCACGAAAATCTTTT
311 AAAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * ** * * ** * *
1684085 CTTTGC-CCTATTTTCTTTAAAACCAAAGTTCATCCCTTAAATAAGACAAGCATCGAAT-CTCAT
375 TTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCAT
* * * * *** *
1684148 AACAATCTCCATTCTTTTCATGATT-GGGATCCAAAAACG
438 -ACTATTTCCATTCTTTTCAAGATTAGGCA-CTTTAAACA
* * * * * * * * * * * * **
1684187 CATTCTAT-TCATTAGGATACATGACAGTGACGCGTTGGTGTCGCAACAAAAGCTTTTTTTTCAC
1 TAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * ** * * **
1684251 C-GTTTTTAATAGAA-TCAAAGTTTGT-CTCTTAAATTAGACAAAC-AAGA--ATA-CTTACACT
65 CAATTTTT-GTA-AAGTCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGATTCTAGTTTTGA-T
* ** * * * * * *
1684309 CTTCCCTAT-ACTTTTCAAGATTAGGCACTTTAAACAA-AGTCTTCTCACTAGGA-TATACGATA
126 CTT-CAT-TCA-TTTT-GTGATTAGGCACTATAAA-AACATTCTCCTCATTAAGATTA-ATGATA
* ** * * * * *
1684371 TTGGT-CCTTTCGTTTCGCA-AGAAAGGC-TTT-TTT-CCCATGAAATTTT--TGTAAAGTGAAA
185 TTGATGATTTTC-TTTTGCATGGAAA-TCTTTTCTTTGCCC-T---ATTTTCCT-TAAAATCAAA
* * * * *** * ** * **** * * ** *
1684429 ATTCAT-GCTTCAAATGAGCCAAATGTGGATAGTAGTTTTGATCT-TATTCATTTCGTGATTAGC
243 GTTCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT-GG
* * * * * * * * * * * *
1684492 CA-CTATAAAAACAATTTC-CTC-TTGAAGATTA-ATGATATTGATGACTTT-CTTTTGCATTGA
306 GATCCA-AAACACATTTTCATTCATT-AGGA-TACATGACAGTGATG-CTTTGGTGTCGCA-AGA
* * ** * ** * *
1684552 AAA--TTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCAT-TTAAATAAGATAAGCAT
366 AAAGCTTTTT-TTTCCACCGATTTT-GATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACA-
* * * * * * * **
1684613 TG-ATTCTCGCA-ACAATCTCCATTTTTTTTACGATTTGG-A-TCCAAA-A
427 TGAATACT--CATACTATTTCCATTCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * * * *
1684659 TCACATTTTATTCATTAGGATACACGATAATGATGC-TTCGGTGTCGTAAGAAAAGCTTTTTTTC
1 T-A-GTCTT-CTCATTAGGATACACGATATTGATGCTTTC-GTTTCGCAAGAAAGGCTTTCTTCC
* * * ** * * * * * * **
1684723 CATC-ATTTTTGATAGAA-TCAAGGTTTGTTTCTTAAATTAGACAAACATGAATACTTA-TACT-
62 CACCAATTTTTG-TA-AAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTC-TAGTTTTG
* ** ** * * * * * *
1684784 ATTCTCCATTC-TTTTCAAGATTAGGTGCTTTAAACAA-AGTCTTCTCACTAGGA-TATACGATA
124 A-TCTTCATTCATTTT-GTGATTAGGCACTATAAA-AACATTCTCCTCATTAAGATTA-ATGATA
* * ** * * ***** *** *
1684846 TTGGTG-CTTTCGTTTCCCA-AGAAAGGCTTTT-TTCCTAAGAAATTTT--TGTAAGGCCAAAAT
185 TTGATGATTTTC-TTTTGCATGGAAA-TCTTTTCTT--TGCCCTATTTTCCT-TAAAATCAAAGT
* * * * * * * * **** * * *
1684906 TCGTGCCTCAAATGAGCCAA--ATGTGCATACTAGTTTTGATCTTCATTCATTTT--GGCACT--
245 TCATCCCTTAAATAAGACAAGCAT-CG-ATTCTCGTAACAATCTCCATTC-TTTTCAAG-ATTGG
* * * * * * * * * * * **
1684965 -AT--AAAA-ATATTCTC-TTCTTTAAGATTA-ACGATATTGATGATCTT-CTTTTGCTTGAAAA
306 GATCCAAAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCT-TTGGTGTCGCAAGAAAA
* ** ** * * * * * *
1685023 -CTTTTCTTTGCC-TTG-TTTTCCTTAAAATGAAATTTTATCCCTTAAATAAGACAAGCATCG-A
369 GCTTTT-TTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAA
* * * ** * * ***
1685084 TTCTCACAACAAGCTCCATTCATTTCAAGATT-GGGATCCAAAAACA
431 TACTCA-TACTATTTCCATTCTTTTCAAGATTAGGCA-CTTTAAACA
* * * * * * * * * ** *
1685130 CATTCTGT-TCATCAGGATACATGACAGTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTTTTCG
1 TAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGC-TTTCTTCCCA
* * * * * * * * * * * **
1685194 TC-GTTTTTG-ATAGTATCAAAGTTGGT-CTCTTAAATCAGACAAACATGAATACTCGTACT-AT
64 CCAATTTTTGTAAAG--TCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGATTCTAGTTTTGA-
** * * * * * * *
1685255 TCCCCATTCATTTCAG-GATTAGGCACTATAAACATAGTCTTCC-CGTTAGGA-TACACGATATT
125 TCTTCATTCATTT-TGTGATTAGGCACTATAAAAACATTC-TCCTCATTAAGATTA-ATGATATT
* ** ** * * * * ** * * *
1685317 GGTGCCTTGGTTTCGCA-AGAAAGGCTCTT-TTCCCACCAATTTT--TGTAAAGTCAAAGTTCGT
187 GATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT
* * * * * * * **** * ** * *
1685378 GCCTCAAATGAGCCAAACAT-GAATTTTTAGTTTTGATCTTCATTAATTT-AGTGATTAGGCA-C
249 CCCTTAAATAAGACAAGCATCG-A-TTCTCGTAACAATCTCCATTCTTTTCA-AGATT-GGGATC
* * * * * * * * ** * * * * *
1685440 TATAAAAACATTCTC-CTCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATGGAAATCTT
310 CA-AAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * ** * ** * * * * * *
1685503 TTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCAACG-ATTCTT
373 TTTTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTC
* * * * *
1685566 GTAAC-AATTCCATTCTTTTCATGATT-GGGA-TTCAACAACA
436 AT-ACTATTTCCATTCTTTTCAAGATTAGGCACTT-TA-AACA
* * * * * * * * * * * ***
1685606 CATTCCAT-TCATCAGGATACATGATAGTGATGCTTTGGTATCGTAAGAAAAGCTTTTTTTTTTT
1 TAGT-CTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGC--TTTCTTCCC
** * * * * * * * * * **
1685670 GTC-ATTTTTG-ATAGCATCAAAGTTGGT-CTCTTAAATCAGACAAACATGAATACTCGTGCT-A
63 ACCAATTTTTGTAAAG--TCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGATTCTAGTTTTGA
** ** * * * * * * *
1685731 TTCCCCATTC-TTTTCAAGATTAGGCACTTTAAACATAGTCTTCC-CGTTAGGA-TACATGAAAT
125 -TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTC-TCCTCATTAAGATTA-ATGATAT
* ** ** * * * * ** * * *
1685793 TGGTGCGTTGGTTTCGCA-AGAAAGGCTCTT-TTCCCACCAATTTT--TGCAAAGTCAAAGTTCG
186 TGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTC-
* * * * * * * * ** * * * ** *
1685854 A-GCCTCAAATGAGCCAAACAT-GAATTTTTAGTTATGATTTTCATTAATTTT-GTGATTAGGCA
247 ATCCCTTAAATAAGACAAGCATCG-A-TTCTCGTAACAATCTCCATT-CTTTTCAAGATT-GGGA
* * * * * * * ** * * * *
1685916 -CTATAAA-AGCATTCTC-CTCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATGAAAAT
308 TCCA-AAACA-CATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGCAAGAAAAG
* * * ** * ** * * * *
1685977 CTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTCAATAAGACAAGCATCG-ATT
370 CTTTTTTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATA
** * * * * ***
1686040 CTTGTAACAATCTCCATT-TTTTTAATGATT-GGGATCCAAAAACA
433 CTCAT-ACTATTTCCATTCTTTTCAA-GATTAGGCA-CTTTAAACA
* * * * * * * * * * * * *
1686084 CATTCTAT-TCATTAGGATACATGACAGTGATGCTTTGGTGTCACACGAAAAGCTTTTTTTCCAT
1 TAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * * * * * **
1686148 C-GTTTTAGATAGAA-TGAAAGTTTGT-CTCTTAAATTAGACAAACTTGAATACTTA-TACT-AT
65 CAATTTTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGATTC-TAGTTTTGA-
** ** * * ** * * * * *
1686208 TCCACATTC-TTTTCAAGACTAGGCACT-TTAGCATAGTCTTCTCACTAGGA-TACATGATATTG
125 TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTA-ATGATATTG
* * * * * ** * * * *
1686270 GTG-CTTTCGTTTCGCA-AGAAAGGC-TTTCTTCCCACCAATTTT--TGTAAAGTCTAAGTTCGT
188 ATGATTTTC-TTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT
* * * * * * * *** * ** * *
1686330 GCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTT-GTGATTAGGCACTGC
249 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCAAGATT-GGGA-TCC
** * * * * * * ** * * * *
1686394 AAAA-ATGTTCTC-CTCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATTG-AAATCTTT
311 AAAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGCA-AGAAAAGCTTT
* * ** ** * ** * * * *
1686455 TCTTTGC-CTTATTTTCCTTAAAATCAAAGTTAATCCCCTAAATAAGACAAGCATTG-ATTCTCG
374 TTTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACT--
* * * **
1686518 CA-ACAATCTCCATTCTTTTCAAGATT-GGGA-TCCAAAAGCA
435 CATACTATTTCCATTCTTTTCAAGATTAGGCACT-TTAAA-CA
* * * * * * * ** * * **
1686558 CATTC-CCTTCATTAGGATACATGACAGTGATGCTTTGGCATCGCAAGAAAAGC-TTCTTTTCGG
1 TAGTCTTC-TCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTC-TTCCCA
* * * * * ** * * **
1686621 TC-GTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAA-ACAGACAAACACGAATACTCA-TACT-
64 CCAATTTTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATA-AGCCAAACGTGGATTCT-AGTTTTG
* ** * ** **
1686680 ATTCCTCATTC-TTTTCAAGATTAGGCACT-T-TAAACATAGTCCTC-TCGTAAGGA-TACACAA
124 A-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCAT--TAA-GATTA-ATGA
* * * * *
1686740 TATTGAT--TCTTTCGTTTCGCA-AGAAAGGC-TTTCTTCT-CACCGATTTT--TGTAAAGTCAA
183 TATTGATGAT-TTTC-TTTTGCATGGAAA-TCTTTTCTT-TGC-CCTATTTTCCT-TAAAATCAA
** * * * * * * * ** * * **
1686798 A-TTTGTGCCTCAAATGAGCCAAACGT-GAATTCTAGTTTCGATCTTCC-CTCATTTT-GTGATT
242 AGTTCATCCCTTAAATAAGACAAGCATCG-ATTCTCGTAACAATC-TCCATTC-TTTTCAAGATT
* * * * * * * * * * ** * * **
1686859 AGGAACAACAAAA-ACATTCTC-CTCAGTAAGATTA-ACGATACTGATGATTTTCTTTTGCGTTG
304 GGGATC--CAAAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC-AAG
* ** * * *** * * * *
1686921 -AAATCTTTTCATTGC-CCTACTTTCCTTGGAATCAAAGTTTATCCCTTAAATAA-AAAAAGCAT
365 AAAAGCTTTTTTTTCCACCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CAT
* * * * ***
1686983 CG-ATTCTCGCA-ACAATCTCCATTCTTTTCAAGATT-GGGATCCAAAAACA
428 -GAATACT--CATACTATTTCCATTCTTTTCAAGATTAGGCA-CTTTAAACA
* * * * * * * * ** *
1687032 CATTCTGT-TCATTAGGATACATGATAGTGATG-TTGT-GGTTCACAAGAAAAGCTTTTTTTTCG
1 TAGTCT-TCTCATTAGGATACACGATATTGATGCTT-TCGTTTCGCAAGAAAGGCTTTCTTCCCA
* ** * ** * * * * * ** * * *
1687094 TCTTTTTTTATAGAA-TCAAAACTGGT-CTTTTAAATCAGACAAACAAGAATACTCATACTATT-
64 CCAATTTTTGTA-AAGTCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGAT--TC-TAGTTTTG
* ** * * * * * ** * * *
1687156 -TC-CCATTC-TTTTCAAGATTCGGCACTTTAAACATAGTCTTTTCATGAGGA-TACACGATATT
124 ATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTA-ATGATATT
* * * * * *** * *
1687217 --TGTATTTTGGTTTCGCA-AGAAAGGCTCTTTTC-CTACTAAATTTT--GTAAAGTCAATA-TT
187 GATG-ATTTT-CTTTTGCATGGAAA---TCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTT
* * * * * * **** * *** *
1687275 CATGCCTCAAATGAGCCAA-CATGGATTCTAGTTTTGATCTTCATT-TATTTTGGGATTAGGCAC
246 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT-TTTCAAGATT-GGGA-
** * * * * * * ** * * * * *
1687338 TATAAAAC-CATTCTC-CTCTTTAAGATTA-ATGATA-TCGATGATTTTCTTTTGTATTG-AAAT
308 TCCAAAACACATTTTCATTCATTAGGA-TACATGACAGT-GATGCTTTGGTGTCGCA-AGAAAAG
* * * ** * ** * * * **
1687398 CATATTTTTTGC-CCTATTTTCTTTAAAATCAAAGTTCATCCCCTAAAAAAGACAGGCATTG-AT
370 C-TTTTTTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAAT
* * * * ***
1687461 TCTCATAACAATCTCCATT-TTTTATAAGATT-GAG-ATCCAAAAACA
432 ACTCAT-ACTATTTCCATTCTTTT-CAAGATTAG-GCA-CTTTAAACA
* * * * ** * * * * * *
1687506 CATTCCCTT-T-GTTAGGATACATGGCATTCACGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCC
1 TAGT--CTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGC-TTTCTTCCC
** * * * * * * * * ** **
1687569 ACCGTTTTTTGATAGAA-T-AAGTGTTTGT-CTCTTAAATATGACACACATGAAAGCTTA-TACT
63 ACCAATTTTTG-TA-AAGTCAA-AGTTCGTGC-CTCAAATAAGCCAAACGTGGATTC-TAGTTTT
** *** * * * * * * * * *
1687630 -ATTCCCCATTC-TTTTCAACATTGGGCACTTTAAACATAGTCTTCTCACTATGA-TACACGATA
123 GA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTA-ATGATA
* * *** ** * * * ** * * *
1687692 TTGGTGCTTGGGTTTCACA-AGAAA----------G-GC--TTTT--GTAAAGCCAAAATTCGTG
185 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * * **** * * ** * *
1687741 CCTCAAATGAGCCAAACATGGA-TCCCAGTTTTGATCTTCAATCATTTT-GTGATTAGGCAT-AA
250 CCTTAAATAAGACAAGCATCGATTCTC-GTAACAATCTCCATTC-TTTTCAAGATT-GGGATCCA
* * * * * * ** * ** * * *** *
1687803 TAAAAACATTCTC-CTCATTAAGATTA-ATGATATTGGCGATTTTCTTTTGTGTTG-AAATCTTT
312 -AAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCG-CAAGAAAAGCTTT
* * * ** * * * ** * * *
1687865 TCTTTGC-CCTATTTTCCTTAAAATCACAGCTCATCTCTTAAATAGGACAAGCATCG-ATTCTCA
374 TTTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCA
* * * * * ***
1687928 CAACAATCTCCATTGTTTTCAAGATTCGAGTCA-AAAAGAACA
437 -TACTATTTCCATTCTTTTCAAGATT--AGGCACTTTA-AACA
* * * * * * * *
1687970 T--TCCTT-TCATTAAGATTCATGACT-TTGATGCTTTGGAGTT-GCAAGAAATGTTTTCCTTTC
1 TAGT-CTTCTCATTAGGATACACGA-TATTGATGCTTTCG-TTTCGCAAGAAAGGCTTT-CTTCC
* ** * * * * * * * **
1688030 CACC-GTTTCTAATAGAA-TCAAAGTTTGT-CTCTTAAAAAAGACAAACATGAATACTCA-TACT
62 CACCAATTT-TTGTA-AAGTCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGATTCT-AGTTTT
* ** * * * * * * *
1688091 AATCTTCATTC-TTTTCAAGATTAGGCACTTTAAACATAGTATTCTCATTAGGA-TACATGATAT
123 GATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTA-ATGATAT
* * * ** ** * ** * *
1688154 TGGTGCTTTGT-TTTTGCA-AGAAAGGTTTT-TATACCACCAATTTT--TGTAAGGTCAAAATCC
186 TGATGATTT-TCTTTTGCATGGAAATCTTTTCT-TTGC-CCTATTTTCCT-TAAAATCAAAGTTC
* * ** * * *** * * * * * ** *
1688214 GTGCCTCCAATGAGCCAAATGTGGATTCTAGTATTC-ATCTTCATTCACTTT-GTGATT-AGA-C
247 ATCCCTTAAATAAGACAAGCATCGATTCTCGTA-ACAATCTCCATTC-TTTTCAAGATTGGGATC
* * * * * * * ** * *
1688275 ACTATAAAAACATTCTC-CTCATTAAGATTA-ATGATATTGATGATTTTCTTTCGCATA-AAAAT
310 -C-A-AAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGCA-AGAAAAG
* ** ** * * ** * **
1688337 CTTTTCTTTGCC-TTG-TTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAGGCATCG-AT
370 CTTTT-TTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAT
* * * * * * ** ***
1688399 TCTCGTAACAATCTCCATTCTTTTCAAGTTTGGGTTCCAAAAACA
432 ACTCAT-ACTATTTCCATTCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * * * * * * * *
1688444 CATTCTAT-TCATTAGAATACATGACAGTGATGGTTTGGTGTCACAAGAAAAGCTTTTTTTCCA-
1 TAGTCT-TCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * ** * * * **
1688507 CTA-TTTTGATAGAGTC-AAGTTTGT-CTCTTAAATAAAACAAACATGTATACTTA-TACT-ATT
65 CAATTTTTG-TAAAGTCAAAGTTCGTGC-CTCAAATAAGCCAAACGTGGATTC-TAGTTTTGA-T
** * ** * * * * **
1688567 CCCCATTCTTTTTCAGATTAGGCACT-T-TAAACATGGTCTTCTCACTAGGA-TACACAATATTG
126 CTTCATTCATTTTGTGATTAGGCACTATAAAAACAT--TCTCCTCATTAAGATTA-ATGATATTG
* * *** ** * ** * * * *
1688629 GT-ACTTTGGATT-CACAAGAAAGGCTTTT-TTCCCACCAATTTT--TGTAAATTCTAAGTTCGT
188 ATGATTTTCTTTTGCA-TGGAAA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT
* * * * * * * * *** * ** * *
1688689 ACCTCAAATGAGCCAAACGTGGATTCTAGTATTTATCTTCATTCATTTT-GTGATTAGGCA-CTA
249 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCAAGATT-GGGATCCA
* * * * * * * ** * * * *
1688752 TAAAAACATTCTCCTT-ATTAAGATTA-ATGACATTGACGATTTTCTTTTGCATTG-AAATCTTT
312 -AAACACATTTTCATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGCA-AGAAAAGCTTT
* * * ** * ** * * * * *
1688814 TCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGAGAAGCATTG-ATTCTCG
374 TTTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACT--
* * * * ** *
1688877 CA-ACAATCTCCATTCATTTCAAGATT-GGGA-TCCAAAAA
435 CATACTATTTCCATTCTTTTCAAGATTAGGCACTTTAAACA
* * * * ** * * ** *
1688915 TACAATCCTT-TCAGTAGGAAACATGGCATTGATGCTTTGGTGTT-GTAAGAAATTCTTTTCTTT
1 T--AGT-CTTCTCATTAGGATACACGATATTGATGCTTTCGT-TTCGCAAGAAAGGC-TTTCTTC
* * * * * * * * **
1688978 CCACC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTAAATAAGTCAAACATGAATACTCGTACT-
61 CCACCAATTTTTG-TA-AAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTG
* * * ** * * * *
1689040 AT-TCCCTATTC-TTTTGAAGATTAGGC-GT-TTTAAGCATTGTCTTCTCATTAGGA-TACACGA
124 ATCT-TC-ATTCATTTTG-TGATTAGGCACTATAAAAACA-T-TCTCCTCATTAAGATTA-ATGA
** * ** * *
1689100 TATTGGCGCTTTGGTTTCGTGCCTCAAATAAGCCAAACGTCGATTCTAGT-TTTGTTCTTCATTC
183 TATTGATGATTTTCTTT--TG---C--AT--G-GAAA--TC--TT-T--TCTTTG--C--C-CT-
** *** * ** * * * *
1689164 ATTTTGTGATTAGGCTTTGTAAA-AACATTCTCCTT-ATTAAGATTAATGATATTGGTGATTTTC
225 A-TTT-TCCTTA--AAAT-CAAAGTTCA-TC-CCTTAAATAAGA-CAA-G-CA-T--CGA--TTC
* * * *** **** ** * ** * *
1689227 TTTTGCGTGGA-AATCT--TTTCTTTGCCCTATTTTCCTTGAAATCA-AAGTTCATCCCTTA--A
275 ---T-CGT-AACAATCTCCATTCTTTTCAAGATTGGGATCCAAAACACATTTTCATTCATTAGGA
* * * * * * * * * * **
1689286 -AGAAGACA---A-GCATCGAT-TCTCATA-ACAATATCCATTATTTT-CA-AGATTAGGATCCA
335 TACATGACAGTGATGCTTTGGTGTCGCA-AGA-AA-A-GCTTTTTTTTCCACCGATTTTGAT--A
* * * * * * *** ** ** ** ** **** * *
1689342 AAAACACA-TTCTAT-TCATTAGGATACACGGCAGTTATGCTTTGGTGTCGCAAGAAAAGCTTTT
394 GAATCAAAGTT-TGTCTC-TTA-AATA-A-GACAAACATG-AAT--ACTCATACTATTTCCATTC
** ** ** *
1689405 TTTTCACCATTTTTG-A-TAGAATCA
451 TTTTCAAGA-TTAGGCACTTTAAACA
* * * * * * ** * **
1689429 AAGTTTATCTCTTAAATAAGACAAACATGAATACTT-ATAATATTCACCATTCTTTTCAAGATTA
1 TAGTCT-TCTC----ATTAG-GATACACG-ATA-TTGATGCT-TT---C-GT-TTCGCAAGA--A
* *** ** * * * ** * * * ** **
1689493 AGCACTTTAAACATAGTC--TTCTCACTTGGATACACGATA-TTGGTGCTTTC-GTTTCG-CAAG
50 AG-GCTTTCTTCCCA-CCAATT-T---TTGTAAAGTC-AAAGTTCGTGC-CTCAAATAAGCCAA-
** *** * *
1689553 A-AAGG---CT--TTTT-A-C-TCAAGAAATTTT-TG-TAAGG-----T-CAAA-ATTCGTGCCT
106 ACGTGGATTCTAGTTTTGATCTTC-ATTCATTTTGTGATTAGGCACTATAAAAACATTC-T-CCT
* * * * * * ****
1689600 CAAATGAGCCA-AACATGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAA
168 C-ATTAAG--ATTA-AT-GATATT-G--ATGA--TT--TTC-TTTTG-CA-T-GG-A-AATCTTT
* * * ** * ** * * * **** **
1689664 ACATT-CTC-ATCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTG
215 TCTTTGCCCTAT-TTT--CCTTAA--A-A-TCA--AAGTTC--ATCCCTT-AAAT-AAGAC-AAG
* * * * * * * ***
1689727 C-CCTATTTTCCTTAA-AATCAAAGTTCATCCCTTAAATTAGACAAGCATCGATTCTCACAACAA
266 CATCGATTCT-CGTAACAATC----TCCAT-TCTT---TT---CAAG-ATTG-GGATC-CAA-AA
* * * * ** * * * * * *
1689790 TCTCTATTGTT--TTCAAGACTGGGATCAAAAAACACAT-TTCCTTCATTAGG-AT-ACATGACT
315 -CAC-ATT-TTCATTC---ATTAGGAT-ACATGACA-GTGATGC-T--TT-GGTGTCGCAAGA--
* * ** * * ** * ** **
1689850 TTCATGCTTTAGTGTCGCA-AGAAATGCTTTCCT---TTCCATCGTTT-T-TGATAGAATCAAAG
366 --AAAGCTTTTTTTTC-CACCG--AT--TTTGATAGAAT-CAAAGTTTGTCTCTTA-AAT--AA-
1689909 TTTGTCTCTTAAATCAAACAAGCATGAATACTCATACTATTCTCCATTCTTTTCAAGATTAGGCA
419 ---G--------A-C--A-AA-CATGAATACTCATACTATT-TCCATTCTTTTCAAGATTAGGCA
1689974 CTTTAAACA
467 CTTTAAACA
* ** * * * * * *
1689983 TAGTCTTCTCATTAGGATGCACGATATTGGGGCATTGGTTTCGTAAGAAAGGGTTTTTTCCCACA
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * *
1690048 AACTTTTGTAAGGTCAATA-TCCGTGCCTCAAATGAGCGAAATGTGGATTCTAGTTTTGATCTTC
66 AATTTTTGTAAAGTCAA-AGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * ** *
1690112 TTTCAATTTGTGATTAGGCACTATAAAAACATTCTTTTCTTTAAGATTAATGATATTGATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* *
1690177 CCTTTTGCATGGAAATCTTAAAATAAAGTTATCTTCTTCTGCTCTATTTTCCTTAAAAT-AAAGT
195 TCTTTTGCATGGAAATC------------T-T-TTCTT-TGCCCTATTTTCCTTAAAATCAAAGT
* * * ** *
1690241 T-ATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCTATTC-TTTCCATTTTTGGATC
245 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC
* * * *
1690304 CAAAAACACATTCT-ATTCATTAGCATACATGACAGTGATGCTTTAGG-GTCACAAGACAAGC-T
310 C-AAAACACATTTTCATTCATTAGGATACATGACAGTGATGCTTT-GGTGTCGCAAGAAAAGCTT
* * * * * *
1690366 TTTTTTGCA-CTATTTTTGATAGAATCAAAGTTTGACTCCTAAACT-TGACAAACATGAATACTT
373 TTTTTTCCACCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTC
* *
1690429 ATACTATTCCCTATTCTTTTCAAGATTAAGCACTTTAAACA
436 ATACTATTTCC-ATTCTTTTCAAGATTAGGCACTTTAAACA
* * *
1690470 TAGTCTTCTCACTA--ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTT-TTACTCAA
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTT-C-CCA
** * * * *
1690532 GAAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATAT-TAGTTTTGATCC
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGAT-TCTAGTTTTGATCT
* *
1690596 TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCATCTTTAAGATTAATGATATTGATGAT
128 TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAT
* *
1690661 TTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCGTCCCTTAAAT
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * *
1690726 GAGACAAGCGTCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGATCCAAAAATACATTT
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTT
* * * * *
1690791 T-ATTCATTAGGATACATGACAGTGGTGTTTTGGTGTCACAAGAAAAGC-TTTTTTTCCACTGTT
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * * * *
1690854 TTTGATAGAATCAAAGGTTGTCTCTTAAATAAGGA-AAACAAGAACAGTCATACTATTCCCTATT
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAAACATGAATACTCATACTATTTCC-ATT
*
1690918 TTTTTCAAGATTAGGCACTTTAAACA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1690944 TAGTCTTCTCAGTAGGATACGCGATATT-AGTGCTTTGGATTCGCAAAAAAAGGCATTT-TTCTC
1 TAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTCGC-AAGAAAGGC-TTTCTTCCC
* * * * * * ** *
1691007 ACTAATTTTTATAAAGTCTAAGTTCGCGTCTCAAATAAGCCAAACATGGAATT-TAGCATTAATC
63 ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGG-ATTCTAGTTTTGATC
* *
1691071 TTCATTCATTTTGTGATTAGGCACTATAAAAACAATCACCTCATTGAGATTAATGATATTGATGA
127 TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC---------------ATT-A--A
*
1691136 TTTTCTGATTAATGATATTGATGATTTTCTTTTGCACT-GAAATCTTTTCTTTGCCCTATTTTTC
174 ------GATTAATGATATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTTCC
* * * * **
1691200 ATGAAACCAAAGTTCATTCCC-TAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCTTT
232 TTAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTT
* * * * * **
1691264 TCAAGATTTGGATCCAAAAACACA--TTCCTTCATTAGGATACCTGGCATTGATGCTTTAATGTC
296 TCAAGATTGGGATCC-AAAACACATTTTCATTCATTAGGATACATGACAGTGATGCTTTGGTGTC
* * *
1691327 GCAAGAAATGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAA
360 GCAAGAAAAGCTTTTTTTTCCACCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * ** * * * * *
1691391 ACATGAGTGCTAATGTTATTCCCTATTTTTTTGAAGATTAGGCATTTTAAGCA
424 ACATGAATACTCATACTATTTCC-ATTCTTTTCAAGATTAGGCACTTTAAACA
* * * *
1691444 TTGTCTTCTCATTAGGATACACGATATTGGTGCTTTAGTTTCGCAAGAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * * *
1691509 AATTTTTGTAAAGTCAAAATTCATGGCTCGAATGAGCCAAACGTGGAATCTGGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
** * * * * *
1691574 TTCATTTCATGATTAGGCACTATAAAAATATTATTCTCATTAAGATTATTGATATTGATGGTTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * *
1691639 CTTTCGCATGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * *
1691704 ACAAGCATCGATTCTCGTAAGAATCTCCATTCTTTTCAAGTTTGGGATCCAAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* * * * *
1691768 TTCATTAGAATACATGACAGTGAT-CGTTCGGTGTCACAAGAATAGC--TTTTTTCCA-CTATTT
325 TTCATTAGGATACATGACAGTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-TT
* * * *
1691829 TTGATAGAATCAAAGTTTAT-TGCTTAAATAAGACAAACATGAATACTTATACTATTCCCCATTA
388 TTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
*
1691893 TTTTCAAGATTACGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1691918 TAGTCTTCTCACTAGGATACATGATATTGGTGCTTTGGATT-GACAAGAAAGGCTTTTTTCCCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCG-CAAGAAAGGCTTTCTTCCCAC
* * * * * * *
1691982 CAATTTTTGTAAAGTCTAAGTTTGCGCCACAAATGAGTCAAACGTGGATTATA-TTATTGATCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTT-TTGATCTT
* * * * * *
1692046 CATTCATTTTGTGATTAGGCATTAAAAAAACATTCTCTTCAATAAGATTAATGATAATGGTGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * *
1692111 TTCTTTCGCATGGAAAGCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTTATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * *
1692176 AGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAAGATTGAGATCCAAAAAGACA-TTC
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTT
* * *
1692240 CATTCATTAGAATACATGACAGTGAT-CGTTTGGTGTCACAAGAAAAGC--TTTTTTCCA-CTAT
323 CATTCATTAGGATACATGACAGTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-
* * *
1692301 TTTTGATAGAATCAAAGTTTAT-TGCTTAAATAAGACAAACATGAATACTTATACTATTCCCCAT
386 TTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTATT-TCCAT
* *
1692365 TATTTTCAAGATTACGCACTTTAAACA
449 TCTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1692392 TAGTCTTCTCACTAGGATACATGATATTGGTGCTTTGGATT-GACAAGAAAGGCTTTTTTCCCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCG-CAAGAAAGGCTTTCTTCCCAC
* * * * * * *
1692456 CAATTTTTGTAAAGTCTAAGTTTGCGCCACAAATGAGTCAAACGTGGATTATA-TTATTGATCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTT-TTGATCTT
* * * *
1692520 CATTCATTTTGTGAGTAGGCACAATAAAAACATTCTCTTCATTAAGATTAATGATACTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
** * * * * *
1692585 TTCTTTTGTGTTGAAATCTTGTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTATCCTTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * *
1692650 AGACAAGCATCGATTCTCGCAATAATCTCCATTATTTTCAAGGTTGGGATCGAGAAACACA-TTC
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA-AAACACATTTT
* * ** * * * * *
1692714 CCTTCATTAGGATGCATGACTTTGACGCTTTGGTGCCACAAGAAATGCTTTCTTTTCCACC-ATT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* * * * *
1692778 TCTGATAGAATCAATGTTTATCTCTAAAATCAGACAAACATGAATGCTCATACTATTCTCCATTC
388 T-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
1692843 TTTTCAAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1692868 TAGT-TT-TC-------T---CGATATT-AGTGCTTTGGTATCGCAAGAAACGTTTTTTTCTCAC
1 TAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * *
1692920 CAA-TTTTGTACAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCCAGTTTTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * *
1692984 ATTCATTTTGTGATTAGGCACTATAAAAACATTATCTTC-TATAAGATTAATGATATTGACGATT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT-TAAGATTAATGATATTGATGATT
* * *
1693048 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * *
1693113 AGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGAATCCAAAAACACATTCT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTT
* ** * * *
1693178 -ATTAATTAGGATACATGACAGTGACACTTTGGTGTCGTAGGAAAAGC-TTTTTTTCCGCC-ATT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* * * * * *
1693240 TTCGATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACACGAATAGTCATACTAATCTCTATTA
388 TT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTC
** * **
1693305 TTTTCTGGATTAGGCACTATAAATG
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * * ***
1693330 TAGTCTTCTCGTAAGTATACACGATATTGATGCTTTCATTTCGTAAGAAAGGCATTCTTCTTGCC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * ** ** * *
1693395 AATTTTTTTAAAGTCAAAGTTCATG-CTTGAGCAAGCCAAATGTGGATTTTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * *
1693459 TTCATTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTAAGGTTAATGATATTGGTGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * * *
1693524 ATTTCGCATGGAAATCTTTTCTTTGCCCTACTTTGCTTAAAATCAAAGTTTATCCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
1693589 ACAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* * **
1693653 TTCATTAGGATACATGTCAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTT-CGTCG-TTTG
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT-
* * * * * * *
1693716 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACACACATGAACAGTCTTACTATTCCTCGTTCCT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTC-CATTCTT
1693781 TTCAAGATTAGGCACTTTAAACA
453 TTCAAGATTAGGCACTTTAAACA
* * * *
1693804 TAGTCTTCTCGTAAGGATACACGATATTGATGCTTTCGTTTCACAAGAAAGGATTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * *
1693869 AATTTTTGTAAAGTCAAAGTTTGTGCCTCAACTAAGCCAAACATGGATTTTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* *
1693934 TTCATTTTGTGATTAGGAACAATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * * * *
1693999 CTTTAGCGTTGAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCAACTCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
1694064 ACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAATACCACA-TTCCC
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA-AACACATTTTCA
* * * ** *
1694128 TACATTGGGATACATAACTTTGATGCTTTGGTGTCGCAA-AAGATG-TTTTTCTTTCCACCG-TT
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAA-AAGCTTTTT-TTTCCACCGATT
* * * *
1694190 TTCGATAGAATCAAAGTTTGTCTCTAAAATCAGACAAACATGAATACTTATACTATTCCCCATTC
388 TT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
1694255 TTTTCAAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1694280 TAGTCTTCTCATTAGGATACACGATATTGGTGGTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACT
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * *
1694345 AATTTTTGT-ACGTAAAAATTCGTGCCTCAAATAAGCCAACCGTGGATTTTCGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
** * * * * *
1694409 TTCATTTTGTGATTAGTTATTATAAAAATATTCTCGTCTTTAAGATTAATGATATTAATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * * *
1694474 CTTTTGCATGAAAATCTTTTATTTTCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAAGAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
*
1694539 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAATCACATTTT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA-CACATTTTCA
* * * * * * *
1694603 TTGATT-GGCATACATGACAGAGATGCTTTGGTGTCACAAGAAAAGCCTTCTTTT-CGCCGTTTT
325 TTCATTAGG-ATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT
* * * * *
1694666 TGATAGAATCAAAGTTTGTCTCTTAAATAGGGCAAACATGAATAGTCATACTAATCTCTATTCTT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTCTT
** * **
1694731 TTCTGGATTAGGCACTATAAATG
453 TTCAAGATTAGGCACTTTAAACA
* * * * ** * * *
1694754 TAGTCTTCTCGTAAGGATACACGATATTGATGTTTTCCTTTCATAAAAAAAGCTTTCTTCCTACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* ** * * *
1694819 AATTTTTTTAAAGTCAAAGTTCGTGCCTCAAGCAAGCCAAATGTGGATTTTATTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * * * * *
1694884 TTTATTTTATGATTCGGTACTATAAAAACATTTTCCTCGTTAAGATTAATGATATTGATGATTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
**
1694949 -TTTTGCATGGAAAATCTTTTCTTTGTACTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
196 CTTTTGCATGG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* ** *
1695013 GACAAGCATCGATTCTCGTAAGAATCTCCATTCTTTTCAACTTTGGGATCCAAAAGCACATTCT-
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA-CACATTTTC
* ** * * * *
1695077 ATTCATTAGAACGCATGACAGTGATGGTTTGGTGACGCAAGAAAAGC-TTTTTTTCCACTGTTTT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT
* * * * * *
1695141 TGATAGAATCAATGTTTGTCTCTTAAATAAGGCAAACAAGAAT-CTTATAGTATTCCCCATTCTT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTCTT
*
1695205 TGT-AAGATTAAGCACTTTAAACA
453 T-TCAAGATTAGGCACTTTAAACA
* * * * * * * * ** *
1695228 TAGTCTTCTCACTATGATAAATGATATTGGTGCTTTGGTTTCGCAGGAAAGGCTTTTTTTCGAAG
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGC-TTTCTTCCCAC
* * * * * *
1695293 AAATTTTTCTAAAGTCAAAATTCGTGCCCCAAATAAGCCAAACGTGGATTTTAGTTTTGATCTTA
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * * ** * *
1695358 ATTCATTTTGTGATTAGGCACAATAAAAGCAATCTCCTCATTAAGATTTGTGATAGTGTTGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
** * *
1695423 TCTTTTGTGTTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * *
1695488 GACAAGCATCGATTCTCGCAACAATCTCCATTGTTTCCAAGATTGGGATCATAAAACACA-TTCC
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC-CAAAACACATTTTC
* * * * * * * ** *
1695552 CTTCATTTGGATACATGAC-TTCGATGCTTTGCTGCCGTAAGAAATGCTTTCCTTTCCAACG-TT
324 ATTCATTAGGATACATGACAGT-GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* *
1695615 TCTAATAGAATCAAAGTTTGTCTCTTAAATCAA-ACAAACATGAATACTCGTACTATTCTCCATT
388 T-TGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATACTATT-TCCATT
*
1695679 CTTTTCAAGATTAGGCACTCTAAACA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1695705 TAATCTTCTCATTAGGATACACGATATTGGTGCATTGGTTTCGTAAGAAAGG-TTTTTCTCCCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCT-TCCCAC
* * * * *
1695769 CAATTTTTGTAAGGTCAAAATTTGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* ** * *
1695834 ATTCATTTTGTGATAAGGCACTATAAAAACATTCTATTCTTTAAGATTAATGATATTGATGGTTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* *
1695899 TCTTTTGCATGGAAATATTTTCTTTGCCCTGTTTTCCTTAAAAT-AAAGTTCAT-CCTTAAAATA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT-AAATA
* * ** *
1695962 AGACAAGCATCGATTCTCGTAACAATCTCTATTCTTTCCATTATTAGGG-TCCAAAAACACATTC
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT-GGGATCC-AAAACACATTT
* ** * * *
1696026 T-ATTCATTAGGATACATGATAGTGATGCTTTGGTGTCATAAGAAAAGC-TTTTTTTGCACTGTT
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * * *
1696089 TTTGATAGAATCAAAGTTTGTCTCCTAAACT-TGACAAACATGAATACTTATACTATTCCCCATT
387 TTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTCATACTATT-TCCATT
*
1696153 CTTTTCAAGATTAAGCACTTTAAACA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1696179 TAGTCTTCTCACTAGGATACACGATATTGGTGTTTTCGTTTCGCAAGAAAGGCTTTTTTCCTAAG
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCC-CAC
* * * * * *
1696244 AAATTTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATAT-TAGTTTTGATTTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGAT-TCTAGTTTTGATCTT
* * *
1696308 CTTTCATTTTGTGATTAGGCACTATAAAAATATTCTCCTCTTTAAGATTAATGATATTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * *
1696373 TTCTTTT-CAATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCGTCCCTTGAAT
194 TTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * * * *
1696437 AAGACACGCATCGATTGTCGTAACAATCTCCATTCTCATAATGAGGAGAAT-GTATTTTTTTCAA
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCT--T-TTCA--AGATTGGGA------TCCA
* * * * * *
1696501 AAATACATTTT-ATTAATTAGGATACATGATAGTGATGCCTTGGGGTCACAAGAAAAGC-TTTTT
312 AAACACATTTTCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * * *
1696564 TTCCACCG-TTTCTGATAGAATCAACGGTTATCTCTTAAATAAGACAAACATGAATAGTCATACT
377 TTCCACCGATTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * *
1696628 GTTCCCCATTTTTTTTCAAGATTCGACACTTTAAACA
441 ATT-TCCA-TTCTTTTCAAGATTAGGCACTTTAAACA
* * * * *
1696665 TAGTCTTCTCACTAGGATACACGATATTGGTGCTTTTGATTCGCAAGAAAGGCATTT-TTCCCCC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGC-TTTCTTCCCAC
* * * * * * * **
1696729 CAATTTTTATAAGGTCTAAGTTCGCGGCTCAAATAAGCCAAGCATGGAATT-TAGCATTGATCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGG-ATTCTAGTTTTGATCTT
* * * *
1696793 CTTTCATCTTGTGATTAGGCACTATAAAAACATTCTCCTCATTGAGATTAATGATATTGATAATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * *
1696858 TTCTTTTGCACT-GAAAACTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAT
194 TTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
** * * * ***
1696922 AAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGTTTTGTATCCAAAA-ACCCGTT
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAACACATTTT
* * * * * *
1696986 CTATTCAATAGAATACATGAAAGTGAT-CGTTTGGTGTCGCAAGAGAAGC-TTTCTTTCCA-CTA
323 C-ATTCATTAGGATACATGACAGTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA
* * ** *
1697048 TTTTTTATAGAATCAAAGTTTGTC-CATTAAATAAGACAAACGTGAATACTTTTACTATTCCCCA
386 -TTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACATGAATACTCATACTATT-TCCA
*
1697112 TTCTTTTCAAGATTAGGAACTTTAAACA
448 TTCTTTTCAAGATTAGGCACTTTAAACA
* * * ** * * * * *
1697140 TAGTCTTCTTACTAGTATACACGATATTGGGGCTTTGGATTCACAAGAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * ** * * *
1697205 AACTTTTGTAAATTCTAAGTTCGCACCTCAAATGAGCCGAAA-GTGGATTCTTGTATTT-ATCAT
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCC-AAACGTGGATTCTAGT-TTTGATCTT
* *
1697268 CATTCATTTTGTGATTATGCACTATAAAAACATTCTCCTCATTAAGATTATTGATATTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * * * * * *
1697333 TCCTTTTGCCTTGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAATTTTATCACATAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * ** *
1697398 TGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGAATGGGATTAAAAAACACA-TTC
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGA-TCCAAAACACATTTT
* * * ** ** * **
1697462 CCTTCATTTGGATACAAGACTTTGATGCTTTGGTGTCATAAGAAATGCTTTCCTTTCCACCG-TT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* * * * * * *
1697526 TCCGTTAGAATCAAAATTTGTCTCTTCAGTCAGACAAACATGAATACTCATACTAATCTCCATTC
388 T-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTC
1697591 TTTTCAAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1697616 TAGTCTTCTCATTAGGATACATGATGTT-AGTGCTTTGGTTTGGCAAGAAAGG-TTTTTATACCA
1 TAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTCGTTTCGCAAGAAAGGCTTTCT-TCCCA
* * * * *
1697679 CCAAATTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTT
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTT
* * * * *
1697744 CATTTACTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTGAGATTAATGATACTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * * *
1697809 TTCTTTCGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAAT-AAAGTTCATCCTTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* ** *
1697873 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCATTATTGGGATCCAAAAACACATTAT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTT
* ** * *
1697938 -ATTCATTAGGATACATGACAGTGATGCTTTGGTATCATAAGAAAAGC-TTTTTTTGCA-CTATT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-T
* * * *
1698000 TTTGATAGAATCAAAGTTTGTCTCCTAAACT-TGACAAACATGAATACTTATACTATTCCCTATT
387 TTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTCATACTATTTCC-ATT
* *
1698064 CTTTTCAAGATTATGCTCTTTAAACA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * *
1698090 TAGTCTTCTC-TCTAGGATACACGATATTGGTGTTTTCATTTTGCAAGAAGGGCTTTTTTCCCAA
1 TAGTCTTCTCAT-TAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCC-A
** * * * *
1698154 GAAATTTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATAT-TAGTTTTGATCT
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGAT-TCTAGTTTTGATCT
* * *
1698218 TCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAATGATATTGATGAT
128 TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAT
* * * * *
1698283 TTCCTTTTCCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAGGTTCATCCCCTAAAT
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * * * *
1698348 AAGCCGAGCATCGATTCTCGCAACAATCTACATTCATTTCAAGATTGGGACCCAAAAACACA-AT
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTT
* * * * * * * *
1698412 CCTTTCATTAGGATACATGGCATTGATGCTTTAGTGTCGCAAGAAATGCTTTTCTTTCCACCGTT
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * * * * *
1698477 TTTGATAGAATCAAAGTTTATCCCTTAAATAAGTCAACCATGAATACTCGTACTATTCTGCATTC
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
** *
1698542 TTTTGTAGATTAGGCATTTTAAAC-
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * ** * * *
1698566 TGTGTCTTCTCGTTAGGATACACGAAATTGGTGCTTGGGTTTTGCAAGAACGGCTTTTTTCCCAC
1 T-AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
** * * *
1698631 CAATTTTTACAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTTG-TCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGT-TTTGATCTT
* * * * * *
1698695 CATTCATTTTGGGATTGGGCACTATAAAAACATTCTTCTTATTAAGATTATTGATGTTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
** * * * *
1698760 TTCTTTTGCATTCAAATCTTTTCTTTTG--ATGATTTTCCTTAAAATCAAGGTCCATCCCCTAAA
194 TTCTTTTGCATGGAAATCTTTTC-TTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * * *
1698823 TAAGCCAAGCATTGATTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCCAAAAACACA-A
257 TAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATT
* * * * *
1698887 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATG-TTTTTCTTTCCACCG
321 TTCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT-TTTCCACCG
* * * * * * *
1698951 TTTTTGATAGAATCAAAGTTTATCCCTAAAATAAGTCAACCATGAATACTCATACTATTCCCCAT
385 ATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCAT
** *
1699016 TCTTTTGTAGATTAGGCATTTTAAAC-
449 TCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * *
1699042 T-GTGTTCTCGTTATGG-TACACGACATTGGTGCTTTAGTTTTGCAAGAACGGCTTT-TT-CCAC
1 TAGTCTTCTCATTA-GGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * * *
1699103 CAATTTTTGCAAAGTCAAAATTCATGCCTCAAATGAGCCGAACATGGATTCTAGTTTTGTTCTTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
*
1699168 ATTCATTTTGTGATTAGGCTA-TATAAAAACATTCTCCTTATTAAGATTAATGATATT-AGTGAT
130 ATTCATTTTGTGATTAGGC-ACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGA-TGAT
* * *
1699231 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTGAAATCAAAGTTCATCCCTTAAAG
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * *
1699296 AAGACAAGCATCGATTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCCAAAACCACAATC
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA-CACATTT
* * * * * * *
1699361 GC-TTCATTAAGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTT
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * * * *
1699425 TTTGATAGAATCAAAGTTTATCCCTTAAATAAGTCAAACATGAATACTCGTACTATTCCCCATTC
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
* * * *
1699490 TTTTGAAGATTAGTCATTTTAGACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * * *
1699515 GT-GTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAACGGCTTTTTTCTCAC
1 -TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * *
1699579 CAATTTTTGCAAAGTCAAATTTCGTGACTCAAATGAGCCAAACATGGATTCTAGTTTTGTTCTTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * * *
1699644 ATTCATTTTGTGATTAGGCTCTATAAAAACATTCTCCTTATTAAGATTAATGATATTGGTGATTC
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
** * * *
1699709 TCTTTTATATGGAAATCTTTTCTTT-CCCTATTTTTCTTGAAATCAAAGTTCATCCCTTAAAGAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * *
1699773 GATAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAAGATTAGGATCCAAAAACACAGTCT-
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTC
* * * *
1699837 ATTCATTAGGATACATGGCAGTTATGCTTTGGTGTCGCAAGAAAAGCATTTTTTT-CACCGTTTT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT
* * * * * *
1699901 TGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAAGAATACTTACAGTATTCCCATTCTTT
389 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTCCATTCTTT
* *
1699966 TCAGGATTAAGCACTTTAAACA
454 TCAAGATTAGGCACTTTAAACA
* * * * * * *
1699988 TAGTCTTCTCACTATGATAAACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAAG
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCC-AC
* * * *
1700053 AAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTA
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * * *
1700118 ATTTATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTTATGATAGTGATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
** * * * *
1700183 TCTTTTGTGTTGAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCTTTAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * *
1700248 GACAAGCATCGATTCTCGCAATAATCTCCATTGTTTTCAAGATTGGGATCAAAAAACACA-TTCC
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC-CAAAACACATTTTC
* ** * * * ** * *
1700312 CTTCATTAGGATACATGACTTTGATGCTTTGGGGCCGCAAGAAATGCTTTCCTTTCCTCTG-TTT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT
*
1700376 CTGATAAAATCAAAGTTTGTCTCTTAAATCAA-ACAAACATGAATACTCATACTATTCTCCATTC
389 -TGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATACTATT-TCCATTC
*
1700440 TTTTCAAGATTAGACACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * ** *
1700465 TAGTCTTCTCATTAGGATACACGATAGTGGTGCATTGGTTTCGTAAGAAAGATTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * *
1700530 AATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATTTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
** * *
1700595 TTCATTTTGTGATTAGGCACTATAAAAACATTCTATTCTTTAAGATTAATGATATTGATGGTTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * *
1700660 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-AAAGTCCATCCCTAAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *** *
1700724 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCTTTATTGGGATCCAAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* ** * * ***
1700788 TTCATTAGGATACAAGACAGTGATGCTTTGGTGTCATAAGAAAA-CCTTTTTTTGCACTTTTTTT
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTTT
* * * * * * *
1700852 TATAGAATCAAAGTTTATCTCCTAAACT-TGAAAAACATGAATACTTATACTATTCCCCATTCTT
390 GATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTCATACTATT-TCCATTCTT
*
1700916 TTCAAGATTCA-GCTCTTTAAACA
453 TTCAAGATT-AGGCACTTTAAACA
* * * * * *
1700939 TAGTCTTCTCACTAGGATACACAATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCTAAA
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCC-CAC
* * * * * *
1701004 AAAATTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATAT-TAGTTTTGATCGT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGAT-TCTAGTTTTGATCTT
* * *
1701068 CTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATC
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * *
1701133 TTCTTTTCCATTGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * **
1701198 AGACACGCATCGATTGC-CGTAACAATCTCCATTCTCGTAATGAGGAGAATGTATATTTTTCCAA
259 AGACAAGCATCGATT-CTCGTAACAATCTCCATTCT--T-TTCA--AGATTG-GGA----TCC-A
* * *
1701262 AAATACATTTT-ATTCATTAGGATACATGACAGTGATGCCTTGGTGTCACAAGAAAAGC-TTTTT
312 AAACACATTTTCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * * * *
1701325 TTCCACCGTTTTTGATAGAATCAACGGTTGTCTCTTAAATAAGACAAACATGAATAGTCCTACTA
377 TTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * *
1701390 TTCCCCATTTTTTTCAAGATTCGACACGTTTAAACA
442 TT-TCCATTCTTTTCAAGATTAGGCAC-TTTAAACA
* * * * * * *
1701426 CAATCTTCTCACTAGGATACACGATATTGGTACTTTGGATTCGCAAG-AAGGACATTTC-TCCCA
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGG-C-TTTCTTCCCA
* * * * * * **
1701489 CCAATTTTTATAAAGTCTAAGTTTGCGCCTCAAATAAGCTAAACATGGAATT-TAGCATTGATCT
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGG-ATTCTAGTTTTGATCT
* * * *
1701553 TCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTGAGATTAATGATATTGATGAC
128 TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAT
** * * *
1701618 TTTCTTTTGCATTAAAAAACTTTTCTTT-CCTCGATTTTCCTTAAAATCAAAGTTCATCCCCTAA
193 TTTCTTTTGCA-TGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
** *
1701682 ATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGTTTGGGATCCAAAAACACAT
256 ATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACAT
* * * * ** *
1701747 TAT-ATTCATTAGAATACATGAAAGTGAT-CATTTGGGGTCGCAAGAGCAGC-TTTCTTTCCA-C
320 TTTCATTCATTAGGATACATGACAGTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACC
* * * * * *
1701808 TATTTTTGATAGAATCAAGGTTTGTCCCTTAAATAAGACAAACATGAATTCTTATACTATTCCCA
384 GA-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTCC-
*
1701873 ATTTTTTTCAAGATTAGGCACTTTAAACA
447 ATTCTTTTCAAGATTAGGCACTTTAAACA
* * * * ** * * * * *
1701902 TAGTCTTCTTACTAGTATGCACGATATTGGGGCTTTGGATTCACCAGAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * ** * * * *
1701967 AACTTTTGTAAATTCTAAGTTCGCACCTCAAATGAGCCAAATGAGGATTCTAGTATTT-ATTTTC
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGT-TTTGATCTTC
* * *
1702031 ATTCATTTTGTGATTAGGCACTATATAAACATTTTCCTCATTAAGATTATTGATATTGATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* **
1702096 TCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGTCCCTTAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * ** *
1702161 GACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTGGGATTAAAAAACACA-TTCC
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGA-TCCAAAACACATTTTC
* * * * ** * * **
1702225 CTTCATTTGGATACAAGCCTTTGATGCTTTGGTGTCACAAGAAATGCTTTCCTTTCCACCG-TTT
324 ATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTT
* * *
1702289 CTGATAGAATCAAAGTTTGTCTCTTAAGTCAGACAAACATGAATACTCATACTAATCTCCATTCT
389 -TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTCT
1702354 TTTCAAGATTAGGCACTTTAAACA
452 TTTCAAGATTAGGCACTTTAAACA
* * * * *
1702378 TAGTCTTCTCATTAGGATACATGATGTTCG-TGCTTTGGTTTCGCAAGAAAGG-TTTTTATACCA
1 TAGTCTTCTCATTAGGATACACGATATT-GATGCTTTCGTTTCGCAAGAAAGGCTTTCT-TCCCA
* * * * *
1702441 CCAATTTTTCTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTT
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTT
* *
1702506 CATTCACTTTGTGATTAGG--C-A-AAAAACATTCTCCTCATTAAGATTAACGATATTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * * *
1702567 TTCTTTCGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAACCAAAGTTCATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * ** * * *
1702632 AGAGAAGCATCTATTCTTATAACAATCTCCATTCTTTCCAAGTTTGGGATCCAAAAACACATTCT
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTT
* * * ** * *
1702697 -ATTCATTA-GA-ACGTAGGACAGTTATGATTTGGTGTCATAAGAAAAGCTTTTTTTT-TA-CTA
323 CATTCATTAGGATAC--ATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA
* * * *
1702757 TTTTTGATAGAATC-AAGTTTGTCTCTTAAGTAAGACAAACATGTATACTTATACTATTCCCCAT
386 -TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCAT
*
1702821 TCTTTTAAAGATTAGGCACTTTAAACA
449 TCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * *
1702848 TAGTCTTCTCACTAGGATACACGATATTGGTGCTTTAGATTCACAAGAAATGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * ** * *
1702913 AATTTTTGTAAATTCTATG-TCAGCACCTTAAATGAGCCAAACGTGGATTCTAGTATTT-AT-TT
66 AATTTTTGTAAAGTCAAAGTTC-GTGCCTCAAATAAGCCAAACGTGGATTCTAGT-TTTGATCTT
* *
1702975 CATTCATTTTGTGATTAGGCACTATAAAAACATTCCCCTCATTAAGATTATTGATATTGATGATT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
** * *
1703040 TTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAACGTTCATCCCCTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * ** * * *
1703105 TGCCAAGCATCGATTCTCACAACAATCTCCATTCATTTCAAGATTGGGATCCAAAAACACA-ATC
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTT
* * * * * * *
1703169 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTGCACCGTTT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* ** * * * *
1703234 TTTATAGAATCAAAGTTTACCCCTTAAATAAGTCAACCATG-ATACTCATACTATTCCCCATTCT
388 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTCT
** * *
1703298 TTTGTAGATTAGGCATTTTAAATA
452 TTTCAAGATTAGGCACTTTAAACA
** * * * ** * * * *
1703322 GT-GTCTTCTTGTTAGGATATA-GATATTGGTGCTTTGGTTTTACAAGAACGACTTTTTTCCCTC
1 -TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * *
1703385 CAATTTTTGCAATGTCAAAATTCGTGCCTCAAA-ACAGCCAAACCTGGATTCTAGTTTTGTTCTT
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATA-AGCCAAACGTGGATTCTAGTTTTGATCTT
* * *
1703449 TATTCATTTTGTGATTAGGCTCTATAAAAACATTCTCCTTATTAAGA-TAATGATATT-AGTGAT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGA-TGAT
* * * *
1703512 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTGAAATCAAAGTTCATCCCCTAAAG
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * ** * *
1703577 AAGGCAAGCATCGATTCTCGCAACAATCTCCACCCATTTCAAGATTGGGATCCAAAAACACA-AT
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTT
* * * * * * * * ** * *
1703641 CCCTTTATTATGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTATATCGTT
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * * ** * * *
1703706 TTTGATAGAATCAAAGTTTATCCCTTAAATAAGTCAAACGCGAATACTCGTACTCTTCCCCATTC
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
* *
1703771 TTTTGAAGATTAGGCATTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * * *
1703796 GT-GTCTTCGCATTAGGATACACAATATTGGTGC-TTCGGTTTTGCAAGAACGACTTTTTTCCCA
1 -TAGTCTTCTCATTAGGATACACGATATTGATGCTTTC-GTTTCGCAAGAAAGGCTTTCTTCCCA
* ** * * * *
1703859 CCAATTTTTGCAAAGTCAAAGTTAATGCCTCAAATGAGCCAAACATGGATTCTAGTTCTGTTCTT
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTT
* * *
1703924 TATTCATTTTGTGATTAGGCTCTAT-AAAACATTCTCCTTATTAAGATTAATGATATT-AGTGAT
129 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGA-TGAT
* * * * *
1703987 TTTCTTTTACATGGAAATCTTTTCTTTGCCCTGTTTTTCTTGAAATCAAAGTTCATCCCTTAAAG
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* *
1704052 AAGAGAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAAGA-TGTGGATCCAAAAACACATT
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG-GGATCC-AAAACACATT
* * * *
1704116 CT-ATTCATTAGGATACATGGCAGTTATACTTTGGTGTCGCAAGAAAAGCTTTTTTTT-CACC-A
321 TTCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA
* * * * *
1704178 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAAGAATACTTATAGTATTCCCATT
386 -TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTCCATT
* *
1704243 CTTTTCAGGATTAAGCACTTTAAACA
450 CTTTTCAAGATTAGGCACTTTAAACA
* * * * * * * *
1704269 TAGTCTTCTCACTATGATAAACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCTCAAG
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTC-CCAC
* * * * * *
1704334 AAAATTTTGTAAAGTCAAAATTCGTACCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTA
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * * *
1704399 ATTCATTTTGTGACTAGGCACAATAAAAACATTCTCCTCATTAAGATTTATGATAGTGATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * *
1704464 TCTTTT--ATGTTGAAATCTTTTCATCGCCCTATTTTCCTAAAAATCAAAGTTCATCCCTTAAAT
195 TCTTTTGCATG--GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
** ** * *
1704527 AAGACAAGCATCGATTCTCACAACAATCTCCATGGTTTTGAAGATTGGGATCAAAAAACACA-TT
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC-CAAAACACATTT
* * ** * * **
1704591 CCCTTCATTAGGATACATGACTTTGATGCTTTGGTGCCGCAAGAAATGCTTTCCTTTCCACCG-T
322 TCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGAT
* * *
1704655 TTCAGATAGAATCAAAGTTTGTCTCTTAAATCAA-ACAAACATGAACACTCGTACTATTCTCCAT
387 TT-TGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATACTATT-TCCAT
1704719 TCTTTTCAAGATTAGGCACTTTAAACA
449 TCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * * * *
1704746 TAGTCTTCTCCTTAGGATACACGATATTGGTGCATTAGTTTCGTAAGAAAGGTTTTTTTCTCACT
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * *
1704811 AATTTTTGTAAGGTCAAAATTTGTGCCTCAAATGAGCCTAACGTGGATACTAGTTTTGATCTTCA
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
* * *
1704876 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAATGATATTGATGGTTTT
131 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * *
1704941 CTTTTGCTTGGAAATCTTTTCTTTGCCTTA-TTTCCTTAAAAT-AAAGTTCATCCCTAAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* ** *
1705004 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCCATTATTGGGATCCAAAAACACATTCT-A
261 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTCA
* * * ** * * *
1705068 TTCATTAGGGTACATGATAGTGATGCTTTGGTGACATAAGAAAAGC-TTTTTTTGCACTGTTTTT
325 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTTT
* * * * * * *
1705132 GGTAAAATCAAAGTTTGTCTCCTGAACT-TGACAAACATGAATACTTATACTATTCCCTATTCTT
390 GATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTATTTCC-ATTCTT
*
1705196 TTCAAGATTAAGCACTTTAAACA
453 TTCAAGATTAGGCACTTTAAACA
* * *
1705219 TAGTCTTCTCACTAGGATACACGATTTTGGTGCTTTCGTTTCGCAAGAAAGGCTTT-TGTCCCAA
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCT-TCCC-A
** * * *
1705283 GAAATTTTTGTAAGGTCAAATTTCGTGCCTCAAATGAGCCAAACGTGGATAT-TAGTTTTGATCT
64 CCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGAT-TCTAGTTTTGATCT
* * * * *
1705347 TCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCTTTAGGATTAACGATATTGATGAT
128 TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAT
* * *
1705412 TTT-TTTTTCATTGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
193 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* ** * *
1705476 AGGACAAGCATCGATTCTCGTAACAATCTCCATTCTCGTAATGAGAAGAAT-GTATTTTCTCCAA
258 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCT--T--T-TCAAGATTGGGA-----TCC-A
* * * *
1705540 AAATACATTTT-ATTCGTTAGGATACATGACACAGTGATGCCTTGGTGTCACAAGAAAAGC-TTT
312 AAACACATTTTCATTCATTAGGATACATG--ACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * *
1705603 TTTTCCACCGTTTTTGATAGAATCAACAG-TTGTCACTTAAATAAGACAAACCT-AAGTAGTCAT
375 TTTTCCACCGATTTTGATAGAATCAA-AGTTTGTCTCTTAAATAAGACAAACATGAA-TACTCAT
* * *
1705666 ACTATTCCCCATTTTTTTCAAGATTCGGCACTTTAAACA
438 ACTATT-TCCATTCTTTTCAAGATTAGGCACTTTAAACA
* * *
1705705 TAGTCTTCTCACTAGGATACGCGATATTG--G--TGC-TTT-G---G--A-------TT--CA-C
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * * * ** *
1705749 AA-----G-AAAGTCTAAGTTCGCGCCTCAAATCAGCCAAACATGGAGTT-TTGCGTTGATTTTC
66 AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGA-TTCTAGTTTTGATCTTC
* * *
1705807 TTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTGAGATTAAAGATATTGATGATTT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * * *
1705872 TCTTTTGCATTGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTGATCCCCTAAATAA
195 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* ** * *
1705937 GTCAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGTTTGGGATCCAAAAACACATTCT-
260 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACATTTTC
* * * * * * *
1706001 ATTCCTTAGAATACATGAAAGTGAT-CGTTTGGTGTCGTAAGAGAAGC-TTTCTTTCCA-CTATT
324 ATTCATTAGGATACATGACAGTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGA-T
* *
1706063 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACTATTCCCCATTC
387 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TCCATTC
1706128 TTTTCAAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * ** * * * * *
1706153 TAGTCTTCTTACTAGGATACACAATAGTGGGGCTTTGGATTCCCAAGATAGGCATTT-TTGCCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGC-TTTCTTCCCAC
* * * *
1706217 CAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAATTAGCCAAACGTGGATTCCAGTTTTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
*
1706282 GTTCATTTTGTGATTAGGCACTATAAAAACATTCTCC-CTATTAAGATTAATGATATTGATGATT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-ATTAAGATTAATGATATTGATGATT
* *
1706346 TTCTTTTGCA-GTGAAATCATTTT-TTTGCCATATTTTCCTTAAAATCAAAGTTTATTCCC-TAA
194 TTCTTTTGCATG-GAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAA
*
1706408 ATAGGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACA-
256 ATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC-AAAACACAT
* * * * * * * * *
1706472 TTCCCTTCATTGGGGTACATGGCATTGATGCTTTGGTGTTGCAAGAAATGCTTGTCTTTT-CACC
320 TTTCATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTT-TTTTTTCCACC
* * * * * * *
1706536 -ATTTTCTCATAGAATCAAAGTTTCTCTCTTAAATAATACAAACATTAATGCTTATACTATTCCC
384 GA-TTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT-TC
*
1706600 CATTCTTTTCAACATTAGGCACTTTAAACA
446 CATTCTTTTCAAGATTAGGCACTTTAAACA
* * * * * * * *
1706630 TAGTCTTCTCACTATGACACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCAAG
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCC-AC
* * * * * * *
1706695 AAATTTTTGTAAAGCCAAAATTCGTGCCTTAAATGATCCAAACGTGGATTCCAGTTTTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
* * *
1706760 ATTCATTTTGTGATTAGGCACAATAAAAACATTCTCTTCATTAAGATTAATGA-AGTTAATGATT
130 ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATA-TTGATGATT
** *
1706824 TTCTTTTGTGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
194 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * ** *
1706889 AGACAAGCATCGATTCTCGCAACAATCACCATTGTTTTCAAGATTGGGATTAAAAAACACA-TTC
259 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGA-TCCAAAACACATTTT
* * * * * ** * ** *
1706953 CCTTTATTTGGATAAAAGACTTTGATGCTTTGGTGTCGCAAGAAATGCTTTCCTTTCTACC-ATT
323 CATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATT
* * * * *
1707017 TCTGATAGAATCAAAGTTTGTCTATTAAGTCAGACAAACATGAATACTCAAACTAATCTCCATTC
388 T-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTTCCATTC
*
1707082 CTTTCAAGATTAGGCACTTTAAACA
451 TTTTCAAGATTAGGCACTTTAAACA
* * * * * * * * *
1707107 TAGTCTTCTCATTAGGACACATGATGTCGGTGCTTTGGTTTCGCAAGAAA-GTTTTTTATACCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCT-TCCCAC
* * * *
1707171 CAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTC
65 CAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTC
1707236 ATTCACTTTT-TGATTAGGCACTATAAAAACATTCTCCT
130 ATTCA-TTTTGTGATTAGGCACTATAAAAACATTCTCCT
1707274 TGTAGACACT
Statistics
Matches: 24952, Mismatches: 4121, Indels: 2248
0.80 0.13 0.07
Matches are distributed among these distances:
447 4 0.00
448 136 0.01
449 2 0.00
450 30 0.00
452 1 0.00
453 2 0.00
454 4 0.00
455 3 0.00
457 2 0.00
458 104 0.00
459 91 0.00
460 1 0.00
461 124 0.00
462 242 0.01
463 338 0.01
464 52 0.00
465 5 0.00
466 6 0.00
467 5 0.00
468 159 0.01
469 429 0.02
470 353 0.01
471 152 0.01
472 968 0.04
473 2436 0.10
474 5475 0.22
475 5203 0.21
476 4138 0.17
477 1828 0.07
478 362 0.01
479 15 0.00
480 7 0.00
481 13 0.00
482 9 0.00
483 3 0.00
484 41 0.00
485 354 0.01
486 603 0.02
487 203 0.01
488 7 0.00
489 1 0.00
490 2 0.00
491 4 0.00
492 2 0.00
493 3 0.00
494 1 0.00
495 1 0.00
496 1 0.00
498 8 0.00
499 135 0.01
500 250 0.01
501 7 0.00
502 1 0.00
503 7 0.00
504 13 0.00
505 19 0.00
506 11 0.00
507 19 0.00
508 28 0.00
509 9 0.00
510 13 0.00
511 15 0.00
512 18 0.00
513 32 0.00
514 27 0.00
515 14 0.00
516 13 0.00
517 6 0.00
518 19 0.00
519 15 0.00
520 15 0.00
521 10 0.00
522 7 0.00
523 9 0.00
524 9 0.00
525 8 0.00
526 6 0.00
527 11 0.00
528 4 0.00
529 7 0.00
530 17 0.00
531 9 0.00
533 2 0.00
534 11 0.00
535 26 0.00
536 9 0.00
537 8 0.00
538 24 0.00
539 11 0.00
540 12 0.00
541 14 0.00
542 6 0.00
543 9 0.00
544 7 0.00
545 6 0.00
546 10 0.00
547 12 0.00
548 6 0.00
549 13 0.00
550 5 0.00
551 5 0.00
552 11 0.00
553 16 0.00
554 10 0.00
555 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC
AATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAACACATTTTCAT
TCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGATTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTTCCATTCTTTTC
AAGATTAGGCACTTTAAACA
Found at i:1678960 original size:158 final size:159
Alignment explanation
Indices: 1678780--1681299 Score: 601
Period size: 158 Copynumber: 15.9 Consensus size: 159
1678770 TTCTTATAAC
**
1678780 AATCTCCATTCTTTTCAAGATTAGGATCCTA-AAACACATTCTACTAATTAGGATACATGACAGT
1 AATCTCCATTCTTTTCGGGATTAGGA-CCTATAAACACATTCTACTAATTAGGATACATGACAGT
* *
1678844 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCATC-ATTTTTGATAGAATCAAAGTTTGTCTC
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAATCAAAGTTCGTCTC
1678908 TTAAATAAGACAAAAATGAATAGTCATACT
130 TTAAATAAGACAAAAATGAATAGTCATACT
* * * * * * * *
1678938 AATCTCCATTTTTTTCGGGATTAGGCACC-ATAAATATAGTCTTCT-ATAAGGATACATGATATT
1 AATCTCCATTCTTTTCGGGATTAGG-ACCTATAAACACATTCTACTAATTAGGATACATGACAGT
* * * ** * * **
1679001 GAAGCTTTCGTTTCAAAAGAAAGGCTTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTGC
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAA-TCAAAGTTCGT-C
* * ** * **
1679064 -CTAAAATAAGCCAAACGTGGAT--TCTAGTTTT
128 TCTTAAATAAGACAAAAATGAATAGTC-A-TACT
* * * * * * * *
1679095 GATCTTCATTCATTTT-GGGATTAGG-CACTATAAAAACATTCTCCTCATTAAGATTA-ACGATA
1 AATCTCCATTC-TTTTCGGGATTAGGAC-CTATAAACACATTCTACTAATTAGGA-TACATGACA
* * * ** * * * * * *** * *
1679157 TTGGTGATTTTCTTTCGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT
63 GTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCACCAATTTTTGATAGAATCAAAGTTCGT
* ** ** *
1679221 CCCTTAAATAAGACAAGTATCG-ATTCTTATAAC-
127 CTCTTAAATAAGACAAAAAT-GAATAGTCAT-ACT
** *
1679254 AATCTCCATTCTTTTCAAGATTGGGATCCTA-AAACACATTCTACTAATTAGGATACATGACAGT
1 AATCTCCATTCTTTTCGGGATTAGGA-CCTATAAACACATTCTACTAATTAGGATACATGACAGT
* *
1679318 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCATC-ATTTTTGATAGAATCAAAGTTTGTCTC
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAATCAAAGTTCGTCTC
1679382 TTAAATAAGACAAAAATGAATAGTCATACT
130 TTAAATAAGACAAAAATGAATAGTCATACT
* * * * * * * *
1679412 AATCTCCATTTTTTTCGGGATTAGGCACC-ATAAATATAGTCTTCT-ATAAGGATACATGATATT
1 AATCTCCATTCTTTTCGGGATTAGG-ACCTATAAACACATTCTACTAATTAGGATACATGACAGT
* * * * * * ** *
1679475 GAAGCTTTCGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTTGTGC
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAA-TCAAAGTTCGT-C
* * ** * **
1679538 -CTAAAATAAGCCAAACGTGGAT--TCTAGTTTT
128 TCTTAAATAAGACAAAAATGAATAGTC-A-TACT
* * * * *
1679569 GATCTTCATTCATTTT-GGGATTAGG-CACTATAAAAACATTCTCCACT--TTAAGATTA-ACGA
1 AATCTCCATTC-TTTTCGGGATTAGGAC-CTATAAACACATTCT--ACTAATTAGGA-TACATGA
* * * ** * * * * * *** *
1679629 CATTGGTGATTTTCTTTCGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTC
61 CAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCACCAATTTTTGATAGAATCAAAGTTC
* * ** * ** * *
1679693 ATCCCTTAAATAAGACAAGCATCGATTCTTGAAAC-
125 GTCTCTTAAATAAGACAAAAAT-GAATAGTCATACT
* ** * * * * *
1679728 AGTCTCCATTCTTTTCAAGATTAGGATCC-AAAAACACATTCTATTCATCAGGATACATGAGAGT
1 AATCTCCATTCTTTTCGGGATTAGGA-CCTATAAACACATTCTACTAATTAGGATACATGACAGT
* * * * * *
1679792 GATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATC-GTTTTTGATAAAATCAATGTTCATCT
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTT-CACCAATTTTTGATAGAATCAAAGTTCGTCT
* * * *
1679856 CTTAAACAAGACAAACATGAATACTCTTACT
129 CTTAAATAAGACAAAAATGAATAGTCATACT
* * * * * * ** * * *
1679887 ATTC-CTCATTCCTTTCAGGATTAGG-CACTTTAAACACAGTCTTCTCGTAAGGATACATGATAT
1 AATCTC-CATTCTTTTCGGGATTAGGAC-CTATAAACACATTCTACTAATTAGGATACATGACAG
* * * * ** ** *
1679950 TGATGCTTTCGTTTCGCAAGAAAGGATTACTTCCCACCAATTTTTG-T-GAAGTCAAAATTCGTG
64 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAA-TCAAAGTTCGT-
* * * * * * **
1680013 C-CTCAATTGAGCCAAACATGGAT--TCTAGTTTT
127 CTCTTAAATAAGACAAAAATGAATAGTC-A-TACT
** * * * ** * * * *
1680045 GGTCTTCATTCATTTT-GTGATTATGTA-GAATAAAAACATTCTCCTCATTAAGATTA-ATGACA
1 AATCTCCATTC-TTTTCGGGATTA-GGACCTATAAACACATTCTACTAATTAGGA-TACATGACA
* * ** * * ** * * * ** * * *
1680107 TTGATGATTTTCTTTTGCGTTG-AAATCTTTTCTTTGC-CCTATTTTTCTTAAAATGAAAGTTCA
63 GTGATGCTTTGGTGTCGC-AAGAAAAGCTTTT-TTTTCACCAATTTTTGATAGAATCAAAGTTCG
* * * * **
1680170 TCTCCTAAATAAGATAAGAATCG-GTTCTCGCA-AC-
126 TCTCTTAAATAAGACAAAAAT-GAATAGT--CATACT
** * * * * *
1680204 AATCTCCA--CTATTTCAAGATTGGGATCC-AAAAACACATTCCT-TTCATTAGGATACATGACT
1 AATCTCCATTCT-TTTCGGGATTAGGA-CCTATAAACACATT-CTACTAATTAGGATACATGACA
* * * * *
1680265 TTGATGCTTTGGTGTCGCAA-AAATG-TATTTCTTTCCACCGA-TTTTGATAGAATCAAAGTTTG
63 GTGATGCTTTGGTGTCGCAAGAAAAGCT-TTT-TTTTCACCAATTTTTGATAGAATCAAAGTTCG
* * * * *
1680327 TCCCTTAAATCAGACAAACATGAATACT-TTCACT
126 TCTCTTAAATAAGACAAAAATGAATAGTCAT-ACT
* ** * * * * *
1680361 -ATTTGCCATTCTTTTCAAGATTAGG-CACTTTAAACATAGTCTTA-TCATTAGGATACATGATA
1 AATCT-CCATTCTTTTCGGGATTAGGAC-CTATAAACACATTC-TACTAATTAGGATACATGACA
* * * * * ** * * *
1680423 TTGGTGCTTTGGTTTTGCAAG-AAAGGTGTTTTTCCCACCAATTTTTG-TA-AGTGAAAATTCGT
63 GTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTTTTTCACCAATTTTTGATAGAATCAAAGTTCGT
* * * * ** * * *
1680485 GC-CTCAAATGAGCCGAATGTGGAT--TCTAGATTT
127 -CTCTTAAATAAGACAAAAATGAATAGTC-ATA-CT
* * ** * * * * ** * * *
1680518 GATCTTCGCTCTTTTTGTGATTAGG-CACTATAAAAACATTCTTCTCTTTAAGATTA-ATGATAT
1 AATCTCCATTCTTTTCGGGATTAGGAC-CTATAAACACATTCTACTAATTAGGA-TACATGACAG
* * ** * * * * * * *** * *
1680581 TAATGATTTTCTTTCGCACGAAAATCTTTTAATTGC-CCTATTTTCCTTAAAATCAAAGTTCATC
64 TGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCACCAATTTTTGATAGAATCAAAGTTCGTC
* ** **
1680645 -CCTAGAATAAGACAAGCATCG-ATTCTCATAAC-
128 TCTTA-AATAAGACAAAAAT-GAATAGTCAT-ACT
** * * *
1680677 AATCTCCATTCTTTTCAAGATTAGGATCCTA-AAACACATTCTATTAATTACGATACAAGACAGT
1 AATCTCCATTCTTTTCGGGATTAGGA-CCTATAAACACATTCTACTAATTAGGATACATGACAGT
* * * * *
1680741 GATGCATTGGTGTCGCAAGAAAAGTTTTTTTTTCACC-ATTTTTGGTAGATTCAAAGTTTGTCTC
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAATCAAAGTTCGTCTC
* * *
1680805 TTAAAAAAAACAACAATGAATAGTCATACT
130 TTAAATAAGACAAAAATGAATAGTCATACT
** * * * * * *
1680835 AATCTCCATTC-TTTCGGGATTAGG-CACTATAAATGCAGTCTTCT-GTAAGGATACATGATATT
1 AATCTCCATTCTTTTCGGGATTAGGAC-CTATAAACACATTCTACTAATTAGGATACATGACAGT
* * * * * ** *
1680897 GATGCTTTCGTTTCACAAGAAAGGCTTTCTTCCCACCAATTATTG-TA-AAGTCAAAGTTCG-CG
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAA-TCAAAGTTCGTC-
* * ** * **
1680959 CCTTAAATAAGCCAAACGTGGAT--TCTAGTTTT
128 TCTTAAATAAGACAAAAATGAATAGTC-A-TACT
* * * * * * * *
1680991 GATCTTCATTCATTTT-GGGATTAGG-CGCTATAAAAACATTTTCCTCATTAAGATTA-ATGATA
1 AATCTCCATTC-TTTTCGGGATTAGGAC-CTATAAACACATTCTACTAATTAGGA-TACATGACA
* * * ** * * * * * * *** * *
1681053 ATGGTGATTTTCTTTCACATTG-AAATCTTTTCTTT-ACCCTATTTTCCTTAAAATCAAAGTTCA
63 GTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTTTTTCA-CCAATTTTTGATAGAATCAAAGTTCG
* ** * ** *
1681116 TCCCTTAAATAAGACAAGCATCAATTCTCCTAAC-
126 TCTCTTAAATAAGACAAAAATGAATAGTCAT-ACT
** * * * * * *
1681150 AATCTCCATTCTTTTCAAGATTGGGATCC-AAAAACACATTCTATTCATTAGGATCCATGGCAGT
1 AATCTCCATTCTTTTCGGGATTAGGA-CCTATAAACACATTCTACTAATTAGGATACATGACAGT
* * * * *
1681214 GATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTCATC-GTTTATGATAGAATCAAAGTTTGTCTC
65 GATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAATCAAAGTTCGTCTC
*
1681278 TTAAATAAGACAAACATGAATA
130 TTAAATAAGACAAAAATGAATA
1681300 CTTTTCCTAT
Statistics
Matches: 1672, Mismatches: 540, Indels: 300
0.67 0.21 0.12
Matches are distributed among these distances:
154 2 0.00
155 11 0.01
156 101 0.06
157 411 0.25
158 582 0.35
159 524 0.31
160 26 0.02
161 12 0.01
162 2 0.00
163 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (159 bp):
AATCTCCATTCTTTTCGGGATTAGGACCTATAAACACATTCTACTAATTAGGATACATGACAGTG
ATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCAATTTTTGATAGAATCAAAGTTCGTCTCT
TAAATAAGACAAAAATGAATAGTCATACT
Found at i:1679072 original size:157 final size:158
Alignment explanation
Indices: 1678780--1679552 Score: 492
Period size: 157 Copynumber: 4.9 Consensus size: 158
1678770 TTCTTATAAC
* ** * * * * * *
1678780 AATCTCCATTCTTTTCAAGATTAGG-ATCC-TAAAACACATTCTACTAATTAGGATACATGACAG
1 AATCTCCATTTTTTTCGGGATTAGGCA-CCAT-AAATACAGTCTTCTAATAAGGATACATGATAT
* * * * * ** * *
1678843 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCATC-ATTTTTGATAGAA-TCAAAGTTTGT-
64 TGAAGCTTTCGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTG
*
1678905 CTCTTAAATAAGACAAAAATGAATAGTCATACT
127 C-CTAAAATAAGACAAAAATGAATAGTCATACT
*
1678938 AATCTCCATTTTTTTCGGGATTAGGCACCATAAATATAGTCTTCT-ATAAGGATACATGATATTG
1 AATCTCCATTTTTTTCGGGATTAGGCACCATAAATACAGTCTTCTAATAAGGATACATGATATTG
* *
1679002 AAGCTTTCGTTTCAAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTA
66 AAGCTTTCGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTA
* ** * **
1679067 AAATAAGCCAAACGTGGAT--TCTAGTTTT
131 AAATAAGACAAAAATGAATAGTC-A-TACT
* * * * * * * * *
1679095 GATCTTCATTCATTTT-GGGATTAGGCACTATAAAAACATTCTCCTCATTAA-GATTA-ACGATA
1 AATCTCCATT-TTTTTCGGGATTAGGCACCATAAATACAGTCTTCT-AATAAGGA-TACATGATA
** * * * * ** * *
1679157 TTGGTGATTTTC-TTTCGCATGAAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTC
63 TTGAAG-CTTTCGTTTCACAAGAAAAGC-TTTCTTCCCACCAATTTT--TGTAAAGTCAAAGTTC
* * * ** ** *
1679219 ATCCCTTAAATAAGACAAGTATCG-ATTCTTATAAC-
124 GTGCCTAAAATAAGACAAAAAT-GAATAGTCAT-ACT
* ** * * * * * * *
1679254 AATCTCCATTCTTTTCAAGATT-GGGATCC-TAAAACACATTCTACTAATTAGGATACATGACAG
1 AATCTCCATTTTTTTCGGGATTAGGCA-CCAT-AAATACAGTCTTCTAATAAGGATACATGATAT
* * * * * ** * *
1679317 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCATC-ATTTTTGATAGAA-TCAAAGTTTGT-
64 TGAAGCTTTCGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTG-TA-AAGTCAAAGTTCGTG
*
1679379 CTCTTAAATAAGACAAAAATGAATAGTCATACT
127 C-CTAAAATAAGACAAAAATGAATAGTCATACT
*
1679412 AATCTCCATTTTTTTCGGGATTAGGCACCATAAATATAGTCTTCT-ATAAGGATACATGATATTG
1 AATCTCCATTTTTTTCGGGATTAGGCACCATAAATACAGTCTTCTAATAAGGATACATGATATTG
* *
1679476 AAGCTTTCGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTTGTGCCTA
66 AAGCTTTCGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTA
*
1679541 AAATAAGCCAAA
131 AAATAAGACAAA
1679553 CGTGGATTCT
Statistics
Matches: 466, Mismatches: 112, Indels: 75
0.71 0.17 0.11
Matches are distributed among these distances:
155 2 0.00
156 6 0.01
157 178 0.38
158 173 0.37
159 103 0.22
160 3 0.01
161 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (158 bp):
AATCTCCATTTTTTTCGGGATTAGGCACCATAAATACAGTCTTCTAATAAGGATACATGATATTG
AAGCTTTCGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTA
AAATAAGACAAAAATGAATAGTCATACT
Found at i:1679294 original size:159 final size:158
Alignment explanation
Indices: 1678686--1683143 Score: 649
Period size: 159 Copynumber: 28.2 Consensus size: 158
1678676 AGTGATATTA
* * * * * * *
1678686 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTGTTTTCCTTAAAATCAAAGTTCATCCCA
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
*
1678751 TAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGATCCTAAAACA
66 TAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAAACA
* * * * *
1678816 CATTCTACTAATTAGGATACATGACAGTG
130 CATTCTCCTCATTAAGATACACGACATTG
* ** * * * *** * ** *
1678845 ATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTT-TCATCATTTTTGATAGAATCAAAGTTTGTCTC
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCC
* ** * * **
1678908 TTAAATAAGACAAAAAT-GAATAGTCAT-ACTAATCTCCATTTTTTTCGGGATTAGGCACC-ATA
65 TTAAATAAGACAAACATCG-ATTCTTATAAC-AATCTCCATTCTTTTCAAGATTAGG-ACCTA-A
* * * * * *
1678970 AATATAGTCTTCT-A-TAAGGATACATGATATTG
126 AACACATTCTCCTCATTAA-GATACACGACATTG
* * ** * ** * * * *
1679002 AAG-CTTTCGTTTCAAAAGAAAGGC-TTTCTTCCCACCAATTTT--TGTAAAGTCAAAGTTCGTG
1 ATGATTTTC-TTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * **** * **
1679063 CCTAAAATAAGCCAAACGTGGATTC-TAGTTTTGATCTTCATTCATTTT-GGGATTAGG-CACTA
63 CCTTAAATAAGACAAACATCGATTCTTA-TAACAATCTCCATTC-TTTTCAAGATTAGGAC-CTA
* *
1679125 TAAAAACATTCTCCTCATTAAGATTA-ACGATATTG
125 -AAACACATTCTCCTCATTAAGA-TACACGACATTG
* * *
1679160 GTGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
** *
1679225 TAAATAAGACAAGTATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAAACA
66 TAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAAACA
* * * * *
1679290 CATTCTACTAATTAGGATACATGACAGTG
130 CATTCTCCTCATTAAGATACACGACATTG
* ** * * * *** * ** *
1679319 ATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTT-TCATCATTTTTGATAGAATCAAAGTTTGTCTC
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCC
* ** * * **
1679382 TTAAATAAGACAAAAAT-GAATAGTCAT-ACTAATCTCCATTTTTTTCGGGATTAGGCACC-ATA
65 TTAAATAAGACAAACATCG-ATTCTTATAAC-AATCTCCATTCTTTTCAAGATTAGG-ACCTA-A
* * * * * *
1679444 AATATAGTCTTCT-A-TAAGGATACATGATATTG
126 AACACATTCTCCTCATTAA-GATACACGACATTG
* * * * ** * * ** *
1679476 AAG-CTTTCGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTTT--TGTAAAGTCAAAGTTTGTG
1 ATGATTTTC-TTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * **** * **
1679537 CCTAAAATAAGCCAAACGTGGATTC-TAGTTTTGATCTTCATTCATTTT-GGGATTAGG-CACTA
63 CCTTAAATAAGACAAACATCGATTCTTA-TAACAATCTCCATTC-TTTTCAAGATTAGGAC-CTA
* * *
1679599 TAAAAACATTCTCCACTTTAAGATTA-ACGACATTG
125 -AAACACATTCTCCTCATTAAGA-TACACGACATTG
* * *
1679634 GTGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * *
1679699 TAAATAAGACAAGCATCGATTCTTGA-AACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAAC
66 TAAATAAGACAAACATCGATTCTT-ATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAAAC
** * * * * *
1679763 ACATTCTATTCATCAGGATACATGAGAGTG
129 ACATTCTCCTCATTAAGATACACGACATTG
* ** * * * * * *** * *
1679793 ATGCTTTGGTGTCGCAAAAAAAGCTTTT-TTTTCCATCGTTTTTGATAAAATCAATGTTCATCTC
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCC
* * * * * * *
1679857 TTAAACAAGACAAACAT-GAATACTCT-T-ACTAT-TCCTCATTCCTTTCAGGATTAGGCACTTT
65 TTAAATAAGACAAACATCG-ATTCT-TATAACAATCT-C-CATTCTTTTCAAGATTAGG-ACCTA
* * * * *
1679918 AAACACAGTCTTCTC-GTAAGGATACATGATATTG
125 AAACACATTCTCCTCATTAA-GATACACGACATTG
* ** * ** * * * * * *
1679952 ATG-CTTTCGTTTCGCAAG-AAAGGATTACTTCCCACCAATTTT--TGTGAAGTCAAAATTCGTG
1 ATGATTTTC-TTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * * ***** * ** *
1680013 CCTCAATTGAGCCAAACATGGATTC-TAGTTTTGGTCTTCATTCATTTT-GTGATTATGTAGA-A
63 CCTTAAATAAGACAAACATCGATTCTTA-TAACAATCTCCATTC-TTTTCAAGATTA-G--GACC
*
1680075 TAAAA-ACATTCTCCTCATTAAGATTA-ATGACATTG
123 TAAAACACATTCTCCTCATTAAGA-TACACGACATTG
* ** * * *
1680110 ATGATTTTCTTTTGCGTTG-AAATCTTTTCTTTGCCCTATTTTTCTTAAAATGAAAGTTCATCTC
1 ATGATTTTCTTTCGC-AAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-C
* * *** * *
1680174 C-TAAATAAGATAAGA-ATCGGTTCTCGCAACAATCTCCA--CTATTTCAAGATTGGGATCCAAA
64 CTTAAATAAGACAA-ACATCGATTCTTATAACAATCTCCATTCT-TTTCAAGATTAGGA-CCTAA
* * * *
1680235 AACACATTC-CTTTCATTAGGATACATGACTTTG
126 AACACATTCTC-CTCATTAAGATACACGACATTG
* ** * * * * ** * **
1680268 ATGCTTTGGTGTCGCAA-AAATG-TATTTCTTTCCACCGATTTT-GATAGAATCAAAGTTTGTCC
1 ATGATTTTCTTTCGCAAGAAAAGCT-TTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * * *
1680330 CTTAAATCAGACAAACAT-GAATACTT-TCACTATTTGCCATTCTTTTCAAGATTAGGCACTTTA
64 CTTAAATAAGACAAACATCG-ATTCTTATAACAATCT-CCATTCTTTTCAAGATTAGG-ACCTAA
* * ** * * *
1680393 AACATAGTCTTATCATTAGGATACATGATATTG
126 AACACATTCTCCTCATTAAGATACACGACATTG
* * ** * * ** * * * * * *
1680426 GTGCTTTGGTTTTGCAAG-AAAGGTGTTT-TTCCCACCAATTTT--TGT-AAGTGAAAATTCGTG
1 ATGATTTTCTTTCGCAAGAAAAGCT-TTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * ** * * *** * ** ***
1680486 CCTCAAATGAGCCGAATGTGGATTC-TAGATTTGATCTTCGCTCTTTTTGTGATTAGG-CACTAT
63 CCTTAAATAAGACAAACATCGATTCTTATA-ACAATCTCCATTCTTTTCAAGATTAGGAC-CTA-
* * * * * *
1680549 AAAAACATTCTTCTCTTTAAGATTA-ATGATATTA
125 AAACACATTCTCCTCATTAAGA-TACACGACATTG
* * **
1680583 ATGATTTTCTTTCGCACGAAAATCTTTTAATTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *
1680647 TAGAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGATCCTAAAAC
66 TA-AATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAAAC
** * * * *
1680712 ACATTCTATTAATTACGATACAAGACAGTG
129 ACATTCTCCTCATTAAGATACACGACATTG
** * * * *** * * ** *
1680742 ATGCA-TTGGTGTCGCAAGAAAAG-TTTTTTTTTCACC-ATTTTTGGTAGATTCAAAGTTTGTCT
1 ATG-ATTTTCTTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCC
* * ** * **
1680804 CTTAAAAAAAAC-AACAAT-GAATAGTCAT-ACTAATCTCCATTC-TTTCGGGATTAGG-CACTA
64 CTTAAATAAGACAAAC-ATCG-ATTCTTATAAC-AATCTCCATTCTTTTCAAGATTAGGAC-CTA
** * * *
1680864 TAAATGCAGTCT--TC-TGTAAGGATACATGATATTG
125 -AAACACATTCTCCTCAT-TAA-GATACACGACATTG
* * * ** * * * *
1680898 ATG-CTTTCGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTATT--GTAAAGTCAAAGTTC-GC
1 ATGATTTTC-TTTCGCAAGAAAAGCTTTTCTTTGC-CCTATT-TTCCTTAAAATCAAAGTTCATC
* * * **** * **
1680958 GCCTTAAATAAGCCAAACGTGGATTC-TAGTTTTGATCTTCATTCATTTT-GGGATTAGG-CGCT
63 -CCTTAAATAAGACAAACATCGATTCTTA-TAACAATCTCCATTC-TTTTCAAGATTAGGAC-CT
* * * * *
1681020 ATAAAAACATTTTCCTCATTAAGATTA-ATGATAATG
124 A-AAACACATTCTCCTCATTAAGA-TACACGACATTG
* * * * *
1681056 GTGATTTTCTTTCACATTG-AAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCC
1 ATGATTTTCTTTCGCA-AGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * ** * *
1681120 TTAAATAAGACAAGCATCAATTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
65 TTAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAAAC
** * * * * *
1681185 ACATTCTATTCATTAGGATCCATGGCAGTG
129 ACATTCTCCTCATTAAGATACACGACATTG
* ** * * * * * ** * ** *
1681215 ATGCTTTGGTGTCACAAGAAAAGCTTTT-TTTTCATCGT-TTAT-GATAGAATCAAAGTTTGTCT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGC--CCTATTTTCCTTAAAATCAAAGTTCATCC
* ** * * * ** *
1681277 CTTAAATAAGACAAACAT-GAATACTT-TTCCTAT-TCCTCATTCCTTTCAGGATTAGGCAATTT
64 CTTAAATAAGACAAACATCG-ATTCTTATAACAATCT-C-CATTCTTTTCAAGATTAGG-ACCTA
* * * * *
1681339 AAACATAGTCTTCTC-GTAAGGATACACGATATTG
125 AAACACATTCTCCTCATTAA-GATACACGACATTG
* ** * ** * * *
1681373 ATG-CTTTCGTTTCGCAAG-AAAGGATTCCTTCCCGCCAATTTT--TGTAAAGTCAAAGTTCGT-
1 ATGATTTTC-TTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * * **** * ** *
1681433 GCTTCAATTAAGCCAAACATGGATTC-TAGATTTGGTCTTCATTCATTTT-GTGATTAGGCACAA
63 CCTT-AAATAAGACAAACATCGATTCTTATA-ACAATCTCCATTC-TTTTCAAGATTAGG-AC-C
*
1681496 TAAAA-ACATTCTCCTCATTAAGATTA-ATGACATTG
123 TAAAACACATTCTCCTCATTAAGA-TACACGACATTG
* *** * *
1681531 ATGACTTTCTTTTGCGTTTG-AAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAGTTCATCC
1 ATGATTTTC-TTT-CGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* ** *** * * *
1681595 CTTAAAAAAGACAAGGATCTG-TTCTCGCAACAATCTCCATTCATTTCAAGATTGGGATCCAAAA
64 CTTAAATAAGACAAACATC-GATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAA
* * ** * *
1681659 ACTCTTTC-CCTTCATTCGGATACATGACTTTG
127 ACACATTCTCC-TCATTAAGATACACGACATTG
** * * * * * ** * **
1681691 ATGATTTGGTGTCGTAA-AAAATGCATTTCTTTCCACCGA-TTTCGATAGAATCAAAGTTTGTCC
1 ATGATTTTCTTTCGCAAGAAAA-GCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * * * *
1681754 CTTAATTCAGACAAACAT-GAATACTTGTACCATTCGCCATTCTTTTCAAGATTAGGCACTTTAA
64 CTTAAATAAGACAAACATCG-ATTCTTATAACAATCTCCATTCTTTTCAAGATTAGG-AC-CTAA
* * * *
1681818 AA-ATAGTT-TTCTCATTAGGATACACGATATTG
126 AACACA-TTCTCCTCATTAAGATACACGACATTG
* * ** * * * * * * * * *
1681850 GTGCTTTGGTTTTGCAAG-AAAGGTTTT-TTTCCCACCAATTTT--TGT-AAGTGAAAATTCGTG
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTT-GC-CCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * * * *** ** ***
1681910 CCTCAAATGAGCCAAACGTGGATTC-TAGATTTGATCTTAATTCATTTT-GTCATTAGG-CACTA
63 CCTTAAATAAGACAAACATCGATTCTTATA-ACAATCTCCATTC-TTTTCAAGATTAGGAC-CTA
* * * *
1681972 TAAACACATTCTCCTCCTTAAGATTA-ATGATATTA
125 -AAACACATTCTCCTCATTAAGA-TACACGACATTG
* ** * * *
1682007 ATGATTTTCTTTTGCTTGAAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCAT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * *
1682072 TAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCTAAAACA
66 TAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGA-CCTAAAACA
** * * * *
1682137 CATTCTATTAATTAGGATACATGACAGTG
130 CATTCTCCTCATTAAGATACACGACATTG
* ** * * *** * * *
1682166 ATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCGCC-ATTTTTGATAGAATCAAAGTTTATCTC
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCC
* ** * *
1682229 TTAAATAAGATAAACAT-GAATAGTCAT-ACTAATCTCCATT-TTTTCAGGATTAGGCACC-ATA
65 TTAAATAAGACAAACATCG-ATTCTTATAAC-AATCTCCATTCTTTTCAAGATTAGG-ACCTA-A
*** * * * * *
1682290 AATGTAGTCTTCTC-GTAAGGATACACAATATTG
126 AACACATTCTCCTCATTAA-GATACACGACATTG
* * ** * * * * * * * *
1682323 ATGCTTTTGTTTCATAAGAAAGGCTTTCCTCCT-ACCAATTTT--TGTAAAGTCAAAGTCCGTGC
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCT-TTGCCCTATTTTCCT-TAAAATCAAAGTTCAT-C
* * ** * **** * ***
1682385 CC-TAAGTAAGCCAAATGT-GGTATC-TAGTTTTGATCTTCATTCTTTTTGTGATTAGG-CACTA
63 CCTTAAATAAGACAAACATCGAT-TCTTA-TAACAATCTCCATTCTTTTCAAGATTAGGAC-CTA
* * * *
1682446 TAAAAACATTCTCCTCAATAAGATTA-ATGATATTG
125 -AAACACATTCTCCTCATTAAGA-TACACGACATTG
* * * * ** * *
1682481 GTGAATTTT-TTTTGCATGGAAATATTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCGC
1 ATG-ATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * * *
1682545 TTAAATAAGACAAACATCGATTCTTGTAACAATCTCCATCCTTTCCAAGATTGGGATCTAAAAAC
65 TTAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGACCT-AAAAC
** * * *
1682610 ACATTCTATTCAAT-AGAATACATGACAGTG
129 ACATTCTCCTCATTAAG-ATACACGACATTG
* ** * * * ** * * ** *
1682640 ATGCTTTGGTGTCCCAAGAAAAGCTTTT-TTTCCACCGCTTTTGAC--AGAATCAAAGTTTGTCT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGC-CCTATTTT-CCTTAAAATCAAAGTTCATCC
* * * * * *
1682702 CTTAAACAAGACAAACAT-GAATACTTAT-ACTAT-TCCCCTATCTTTTCAAGATTAGGCACTTT
64 CTTAAATAAGACAAACATCG-ATTCTTATAACAATCT-CCAT-TCTTTTCAAGATTAGG-ACCTA
* * * * * *
1682764 AAACATAGTCTTCTCACTATGATACACGATATTG
125 AAACACATTCTCCTCATTAAGATACACGACATTG
* ** * * *** * *
1682798 ATGCTTTAGTTTCGTAAGAAAGGCTTTT-TTCT-CAAGAAATTTT--TGTAAAGTCAAAGTTCGT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTT-TGC--CCTATTTTCCT-TAAAATCAAAGTTCAT
* ** * ** * **** * * ** *
1682859 ACCC-CAAGCAAGCCAAATGTGGATTC-TAGTTTTGATATTCATTCCTTTT-GTGATTACGCACA
62 -CCCTTAAATAAGACAAACATCGATTCTTA-TAACAATCTCCATT-CTTTTCAAGATTA-GGAC-
* * * *
1682921 ATAAAA-ACATTCTTCCTCAATAAGATTA-ATGAAATTG
122 CTAAAACACATTC-TCCTCATTAAGA-TACACGACATTG
* * * **
1682958 GTGATTTTCTTTCGCATGGAAATATTTTCTTT-CCCTATTTTCCTTAAAATCAAAGTTCATCCCT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
** **
1683022 TAAATAAGACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT-GAGATCC-AAAAG
66 TAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAG-GA-CCTAAAA-
** * * * *
1683085 CACATTCTATTAATTAGGATACATGACAGTG
128 CACATTCTCCTCATTAAGATACACGACATTG
* ** * *
1683116 ATGCTTTGGTATCGCAAGAAAAGTTTTT
1 ATGATTTTCTTTCGCAAGAAAAGCTTTT
1683144 TTCTATCGTT
Statistics
Matches: 2977, Mismatches: 1032, Indels: 581
0.65 0.22 0.13
Matches are distributed among these distances:
154 1 0.00
155 16 0.01
156 118 0.04
157 586 0.20
158 1019 0.34
159 1033 0.35
160 186 0.06
161 18 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
ATGATTTTCTTTCGCAAGAAAAGCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
TAAATAAGACAAACATCGATTCTTATAACAATCTCCATTCTTTTCAAGATTAGGACCTAAAACAC
ATTCTCCTCATTAAGATACACGACATTG
Found at i:1683918 original size:158 final size:156
Alignment explanation
Indices: 1683573--1683919 Score: 383
Period size: 156 Copynumber: 2.2 Consensus size: 156
1683563 TTCTTTACGG
* * ** * *
1683573 TACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCATCGTTTTTGATAAAGTCAA
1 TACACGACAGTAATGCTTTCATGTCGCAAGAAAAGCTTTTTTTCCATCGTATTTGATAAAATCAA
* * * * *
1683638 AGTTTGCTCTTAAATAAGGCAAACATGAATAGTCATGCTAATCTCCTTTTTTTCAGGACTAGGAA
66 AGCTTGCTCTTAAATAAGACAAACATGAATACTCATACTAATCTCCTTTTTTTCAAGACTAGGAA
** *
1683703 CCATAAATGTAGTCTTCTCGTAAGGA
131 CCATAAACATAGGCTTCTCGTAAGGA
* ** **
1683729 TACACGACAGTGATGCTTTGGTGTCATAAGAAAAGCTTTTTTTCCATCGTATTTGATAAAATCAA
1 TACACGACAGTAATGCTTTCATGTCGCAAGAAAAGCTTTTTTTCCATCGTATTTGATAAAATCAA
* * *
1683794 AGCTTGTCTCTTAAATGAGACAAACATGAATACTCCTACT-AT-TCCATATTCTTTTCAAGATTA
66 AGCTTG-CTCTTAAATAAGACAAACATGAATACTCATACTAATCTCC-T-TT-TTTTCAAGACTA
* ** *
1683857 GGCACTTTAAGCATAGGCTTCTCGTAAGGA
127 GGAACCATAAACATAGGCTTCTCGTAAGGA
* * *
1683887 TACACGATATTAATGCTTTCATTTCGCAAGAAA
1 TACACGACAGTAATGCTTTCATGTCGCAAGAAA
1683920 GGATTTCTTC
Statistics
Matches: 159, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
155 3 0.02
156 68 0.43
157 30 0.19
158 58 0.36
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (156 bp):
TACACGACAGTAATGCTTTCATGTCGCAAGAAAAGCTTTTTTTCCATCGTATTTGATAAAATCAA
AGCTTGCTCTTAAATAAGACAAACATGAATACTCATACTAATCTCCTTTTTTTCAAGACTAGGAA
CCATAAACATAGGCTTCTCGTAAGGA
Found at i:1684044 original size:628 final size:629
Alignment explanation
Indices: 1683100--1684300 Score: 1648
Period size: 631 Copynumber: 1.9 Consensus size: 629
1683090 TCTATTAATT
* * * * * *
1683100 AGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAGTTTTTTTCTATCGTTTTTTATACAAT
1 AGGATACACGACAGTGATGCTTTGGTATCACAAGAAAAGTTTTTTTCCATCGTATTTGATAAAAT
* * **
1683165 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATATCCATTTTTTCGGGATTA
66 CAAAGCTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATATCCATTTTTTCAAGATTA
** * * * * * *
1683230 GGCACCATAATTATAGTCTTCTATAAGGATACATGATATTGATACTTTCTTTTCATAAGAAAGGC
131 GGCACCATAAGCATAGGCTTCTATAAGGATACACGATATTAATACTTTCATTTCACAAGAAAGGA
* * * * **
1683295 TTTCTTCCCACCAATTTTTGTAAAGTAAAAGTTCATGCCTTAAATTAGCCAAACGTGGATTTTAG
196 TTTCTTCCCACCAATTTTGGTAAAGTAAAAGTTCATGCCTCAAATGAGCCAAACGTGCATACTAG
*
1683360 TTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATG-T
261 TTTTGATCTTCATTCATTTTGTGATTAGACACAATAAAAACATTCTCCTCTTTAAGATTAATGAT
* * * *
1683424 ATTGATGATTTACTTTTATA-GTGAAAT-TTTT-TTTGCCTCT-TTTTCCTTAAAATCAAAGTTT
326 ATTGATGATTTACTTTTACACG-AAAATCTTTTCTTTGCC-CTATTTTCCTTAAAACCAAAGTTC
** * *
1683485 ATCCCTTAAATAAGATGACCATCGATTCTCGTAACAAACTCCATTCTTTTCAAGATTGGCATCCA
389 ATCCCTTAAATAAGACAACCATCGAATCTCATAACAAACTCCATTCTTTTCAAGATTGGCATCCA
* * * *
1683550 AAAACACATTCTATTCTTTACGG-TACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT
454 AAAACACATTCTATTCATTA-GGATACATGACAGTGACGCGTTGGTGTCGCAACAAAAGCTTTTT
* * * *
1683614 TTCCATCGTTTTTGATA-AAGTCAAAGTTTG-CTCTTAAATAAGGCAAACATGAATAGTCATGCT
518 TTCCACCGTTTTTAATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATGCT
1683677 AATCTCCTTTTTTTCAGGACTAGGAACCATAAATGTAGTCTTCTCGTA
582 AATCTCCTTTTTTTCAGGACTAGGAACCATAAATGTAGTCTTCTCGTA
* *
1683725 AGGATACACGACAGTGATGCTTTGGTGTCATAAGAAAAGCTTTTTTTCCATCGTATTTGATAAAA
1 AGGATACACGACAGTGATGCTTTGGTATCACAAGAAAAG-TTTTTTTCCATCGTATTTGATAAAA
* *
1683790 TCAAAGCTTGTCTCTTAAATGAGACAAACATGAATACTCCTACT-AT-TCCATATTCTTTTCAAG
65 TCAAAGCTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATATCC--ATT-TTTTCAAG
** * * *
1683853 ATTAGGCACTTTAAGCATAGGCTTCTCGTAAGGATACACGATATTAATGCTTTCATTTCGCAAGA
127 ATTAGGCACCATAAGCATAGGCTTCT-ATAAGGATACACGATATTAATACTTTCATTTCACAAGA
* * *
1683918 AAGGATTTCTTCCCACCAATTTTGGTAAAGTCAAAGTTCGTGTCTCAAATGAGCCAAACGTGCAT
191 AAGGATTTCTTCCCACCAATTTTGGTAAAGTAAAAGTTCATGCCTCAAATGAGCCAAACGTGCAT
* ** *
1683983 ACTAGTTTTGATCTTCATTCATTTTGTGATTCGACACTCTAAAAACATTCTCTTCTTTAAGATTA
256 ACTAGTTTTGATCTTCATTCATTTTGTGATTAGACACAATAAAAACATTCTCCTCTTTAAGATTA
* * *
1684048 ATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAACCAAAG
321 ATGATATTGATGATTTACTTTTACACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCAAAG
* * * *
1684113 TTCATCCCTTAAATAAGACAAGCATCGAATCTCATAACAATCTCCATTCTTTTCATGATTGGGAT
386 TTCATCCCTTAAATAAGACAACCATCGAATCTCATAACAAACTCCATTCTTTTCAAGATTGGCAT
*
1684178 CCAAAAACGCATTCTATTCATTAGGATACATGACAGTGACGCGTTGGTGTCGCAACAAAAGCTTT
451 CCAAAAACACATTCTATTCATTAGGATACATGACAGTGACGCGTTGGTGTCGCAACAAAAGCTTT
* *
1684243 TTTTTCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAAGAATA
516 TTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA
1684301 CTTACACTCT
Statistics
Matches: 496, Mismatches: 67, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
624 3 0.01
625 37 0.07
626 64 0.13
627 27 0.05
628 149 0.30
629 22 0.04
630 9 0.02
631 161 0.32
632 24 0.05
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (629 bp):
AGGATACACGACAGTGATGCTTTGGTATCACAAGAAAAGTTTTTTTCCATCGTATTTGATAAAAT
CAAAGCTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATATCCATTTTTTCAAGATTA
GGCACCATAAGCATAGGCTTCTATAAGGATACACGATATTAATACTTTCATTTCACAAGAAAGGA
TTTCTTCCCACCAATTTTGGTAAAGTAAAAGTTCATGCCTCAAATGAGCCAAACGTGCATACTAG
TTTTGATCTTCATTCATTTTGTGATTAGACACAATAAAAACATTCTCCTCTTTAAGATTAATGAT
ATTGATGATTTACTTTTACACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCAAAGTTCAT
CCCTTAAATAAGACAACCATCGAATCTCATAACAAACTCCATTCTTTTCAAGATTGGCATCCAAA
AACACATTCTATTCATTAGGATACATGACAGTGACGCGTTGGTGTCGCAACAAAAGCTTTTTTTC
CACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATGCTAATC
TCCTTTTTTTCAGGACTAGGAACCATAAATGTAGTCTTCTCGTA
Found at i:1685360 original size:159 final size:160
Alignment explanation
Indices: 1685138--1686788 Score: 445
Period size: 159 Copynumber: 10.4 Consensus size: 160
1685128 CACATTCTGT
* * * * * ** ** *
1685138 TCATCAGGATACATGACAGTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTTTTCGTC-GTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TCTTTTCCCACCAATTTTT
* *
1685202 GATAGTATCAAAGTTGGTCTCTTAAATCAGACAAACATGAATACTCGTACTATTCCCCATTCATT
65 GATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACATGAATACTCGTACTATTCCCCATTCATT
1685267 TCAGGATTAGGCACTATAAACATAGTCTTCC
130 TCAGGATTAGGCACTATAAACATAGTCTTCC
* * * *
1685298 -CGTTAGGATACACGATATTGGTGCCTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTG
* * * ** * ** ** *
1685362 -TA-AAGTCAAAGTTCGTGC-CTCAAATGAGCCAAACATGAATTTTTAGTTTTGA-TCTTCATTA
66 ATAGAA-TCAAAGTTCGT-CTCTTAAATCAGACAAACATGAA-TACTCGTACT-ATTCCCCATTC
* * *
1685423 ATTT-AGTGATTAGGCACTATAAAAACATTC-TCC
127 ATTTCAG-GATTAGGCACTATAAACATAGTCTTCC
* * ** * * * * ** *
1685456 TCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATTT
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAGGCTCTT-TTCCCACCAATTT
*** * * * * * * * * * *
1685518 TCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCAACG-ATTCTTGTAACAATT--CCATT
63 TTGATAGAATCAAAGTTCGTCTCTTAAATCAGACAAAC-ATGAATACTCGT-ACTATTCCCCATT
* * * * **
1685580 CTTTTCATGATT-GGGA-T-TCAACA-ACACATTCC
126 CATTTCAGGATTAGGCACTATAAACATAGTC-TTCC
* * * * * * *****
1685612 ATTCATCAGGATACATGATAGTGATGCTTTGGTATCGTAAGAAAAGCTTTTTTTTTTTGTC-ATT
1 --TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGC--TCTTTTCCCACCAATT
* * *
1685676 TTTGATAGCATCAAAGTTGGTCTCTTAAATCAGACAAACATGAATACTCGTGCTATTCCCCATTC
62 TTTGATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACATGAATACTCGTACTATTCCCCATTC
* * *
1685741 TTTTCAAGATTAGGCACTTTAAACATAGTCTTCC
127 ATTTCAGGATTAGGCACTATAAACATAGTCTTCC
* * * *
1685775 -CGTTAGGATACATGAAATTGGTGCGTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTG
* * * * * ** * **
1685839 CA-A-AGTCAAAGTTCGAGC-CTCAAATGAGCCAAACATGAATTTTTAGTTA-TGATT-TTCATT
66 -ATAGAATCAAAGTTCG-TCTCTTAAATCAGACAAACATGAA-TACTCG-TACT-ATTCCCCATT
* *
1685899 AATTT-TGTGATTAGGCACTATAAAAGCAT--TC-TCC
126 CATTTCAG-GATTAGGCACTAT-AAA-CATAGTCTTCC
* * ** * * ** * ** *
1685933 TCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTT
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTT-TTCCCACCAATTTT
*** * * * * * * * * * * *
1685996 CCTTAAAATCAAAGTTCATCCCTTCAATAAGACAAGCATCG-ATTCTTGTAAC-AATCTCCATTT
64 TGATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACAT-GAATACTCGT-ACTATTCCCCATTC
* * * * * * * *
1686059 TTTTAATGATT-GGGATCCAAAAACACATTCTAT--
127 ATTTCAGGATTAGGCA-CTATAAACATAGTCT-TCC
* * * * * * * * * * *
1686092 TCATTAGGATACATGACAGTGATGCTTTGGTGTCACACGAAAAGCTTTTTTTCCATC-GTTTTAG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTG
* * * * ** * *
1686156 ATAGAATGAAAGTTTGTCTCTTAAATTAGACAAACTTGAATACTTATACTATTCCACATTCTTTT
66 ATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACATGAATACTCGTACTATTCCCCATTCATTT
* * * *
1686221 CAAGACTAGGCACT-TTAGCATAGTCTT-C
131 CAGGATTAGGCACTATAAACATAGTCTTCC
* * *
1686249 TCACTAGGATACATGATATTGGTGCTTTCGTTTCGCAAGAAAGGCT-TTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTT-TTCCCACCAATTTTT
* * * * * * * * **
1686313 G-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACATGGATTCTAGTATTGA-TCTTCATTC
65 GATAGAA-TCAAAGTTCGT-CTCTTAAATCAGACAAACATGAATACTCGTACT-ATTCCCCATTC
* ** *
1686374 ATTT-TGTGATTAGGCACTGCAAAAAT-GT-TCTCC
127 ATTTCAG-GATTAGGCACTATAAACATAGTCT-TCC
* * ** * * *** *
1686407 TCATTAAGATTA-ATGATATTGATGATTTTCTTTTGCATTGAAA---TCTTTTCTTTGCCTTATT
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAGGCTCTTTTC-CCACC-AATT
*** * ** * * * * * * * *
1686468 TTCCTTAAAATCAAAGTTAATCCCCTAAATAAGACAAGCATTG-ATTCTCGCAAC-AATCTCCAT
62 TTTGATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACA-TGAATACTCG-TACTATTCCCCAT
* * * * * *
1686531 TCTTTTCAAGATT-GGGATCCA-AAAGCACA-T-TCCC
125 TCATTTCAGGATTAGGCA-CTATAAA-CATAGTCTTCC
* * ** * *** *
1686565 TTCATTAGGATACATGACAGTGATGCTTTGGCATCGCAAGAAAAGCTTCTTTT-CGGTC-GTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TCTTTTCCCACCAATTTT
* * * * * *
1686628 TGATAGAATCAAAGTTTGTCTCTTAAAACAGACAAACACGAATACTCATACTATTCCTCATTCTT
64 TGATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACATGAATACTCGTACTATTCCCCATTCAT
* * *
1686693 TTCAAGATTAGGCACTTTAAACATAGTCCT-C
129 TTCAGGATTAGGCACTATAAACATAGTCTTCC
* * ** * * * *
1686724 TCGTAAGGATACACAATATTGATTCTTTCGTTTCGCAAGAAAGGCT-TTCTTCTCACCGATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTT-TTCCCACCAATTTTT
1686788 G
65 G
1686789 TAAAGTCAAA
Statistics
Matches: 1047, Mismatches: 341, Indels: 207
0.66 0.21 0.13
Matches are distributed among these distances:
154 2 0.00
155 4 0.00
156 16 0.02
157 130 0.12
158 342 0.33
159 388 0.37
160 135 0.13
161 12 0.01
162 7 0.01
163 9 0.01
164 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (160 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTG
ATAGAATCAAAGTTCGTCTCTTAAATCAGACAAACATGAATACTCGTACTATTCCCCATTCATTT
CAGGATTAGGCACTATAAACATAGTCTTCC
Found at i:1691150 original size:24 final size:24
Alignment explanation
Indices: 1691118--1691165 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
1691108 ACCTCATTGA
1691118 GATTAATGATATTGATGATTTTCT
1 GATTAATGATATTGATGATTTTCT
1691142 GATTAATGATATTGATGATTTTCT
1 GATTAATGATATTGATGATTTTCT
1691166 TTTGCACTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.17, T:0.50
Consensus pattern (24 bp):
GATTAATGATATTGATGATTTTCT
Found at i:1691898 original size:157 final size:158
Alignment explanation
Indices: 1691679--1692378 Score: 401
Period size: 157 Copynumber: 4.4 Consensus size: 158
1691669 TTTTCCTTAA
* * * * ** ** * * *
1691679 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-ATTCTCGTAAGAATCTCCATTCTTTTCAA
1 AATCAAAGTTTATCGCTTAAATAAGACAAACATCGAATACTTATACTATTCCCCATTATTTTCAA
* *
1691743 G-TTTGGGATCCAAAAACACATTCTATTCATTAGAATACATGACAGTGATCGTTCGGTGTCACAA
66 GATTAGGCATCCAAAAACACATTCTATTCATTAGAATACATGACAGTGAT-GTTCGGTGTCACAA
1691807 GAATAGCTTTTTT-CCACTATTTTTGATAG
130 GAA-AGCTTTTTTCCCACTATTTTTGATAG
*
1691836 AATCAAAGTTTATTGCTTAAATAAGACAAACAT-GAATACTTATACTATTCCCCATTATTTTCAA
1 AATCAAAGTTTATCGCTTAAATAAGACAAACATCGAATACTTATACTATTCCCCATTATTTTCAA
* *** * * * * * * * * *
1691900 GATTACGCA-CTTTAAACATAGTCT-TCTCACTAGGATACATGATATTGGTGCTTTGGAT-TGAC
66 GATTAGGCATCCAAAAACACATTCTAT-TCATTAGAATACATGACAGTGATG-TTCGG-TGTCAC
*
1691962 AAGAAAGGCTTTTTTCCCACCAATTTTTG-TA-
128 AAGAAA-GCTTTTTTCCCA-CTATTTTTGATAG
* * ** * * * * **
1691993 AAGTCTAAGTTT-GCGCCACAAATGAGTCAAACGTGGATTATA-TTAT--TGA-TCTTCATTCAT
1 AA-TCAAAGTTTATCG-CTTAAATAAGACAAACATCGA--ATACTTATACT-ATTCCCCATT-AT
** * * * * * * *
1692053 TTT-GTGATTAGGCAT-TAAAAAAACATTCTCTTCAATAAGATTA-ATGATAATGGTGATTTTC-
60 TTTCAAGATTAGGCATCCAAAAACACATTCTATTC-ATTAGAATACATGA-CA--GTGATGTTCG
* * * * *** *
1692114 -TTTCGCATGGAAAGCTTTTCTTTGCC-CTATTTTCCCTAA
121 GTGTCACA-AGAAAGC-TTT-TTTCCCACTATTTTTGATAG
* * * * * *
1692153 AATCAAAGTTTATCCCTTAAATAAGACAAGCATCG-ATTCTCGTA-AC-AATCTCCATTGTTTTC
1 AATCAAAGTTTATCGCTTAAATAAGACAAACATCGAATACT--TATACTATTCCCCATTATTTTC
* * *
1692215 AAGATT-GAG-ATCCAAAAAGACATTCCATTCATTAGAATACATGACAGTGATCGTTTGGTGTCA
64 AAGATTAG-GCATCCAAAAACACATTCTATTCATTAGAATACATGACAGTGAT-GTTCGGTGTCA
1692278 CAAGAAAAGCTTTTTT-CCACTATTTTTGATAG
127 CAAG-AAAGCTTTTTTCCCACTATTTTTGATAG
*
1692310 AATCAAAGTTTATTGCTTAAATAAGACAAACAT-GAATACTTATACTATTCCCCATTATTTTCAA
1 AATCAAAGTTTATCGCTTAAATAAGACAAACATCGAATACTTATACTATTCCCCATTATTTTCAA
1692374 GATTA
66 GATTA
1692379 CGCACTTTAA
Statistics
Matches: 396, Mismatches: 100, Indels: 93
0.67 0.17 0.16
Matches are distributed among these distances:
155 2 0.01
156 16 0.04
157 171 0.43
158 92 0.23
159 95 0.24
160 14 0.04
161 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (158 bp):
AATCAAAGTTTATCGCTTAAATAAGACAAACATCGAATACTTATACTATTCCCCATTATTTTCAA
GATTAGGCATCCAAAAACACATTCTATTCATTAGAATACATGACAGTGATGTTCGGTGTCACAAG
AAAGCTTTTTTCCCACTATTTTTGATAG
Found at i:1692429 original size:157 final size:157
Alignment explanation
Indices: 1691801--1692452 Score: 441
Period size: 157 Copynumber: 4.1 Consensus size: 157
1691791 TCGTTCGGTG
* *
1691801 TCACAAGAATAGCTTTTTTCCACTATTTTTGATAGAATCAAAGTTTATTGCTTAAATAAGACAAA
1 TCACAAGAAAAGCTTTTTTCCACTATTTTTGATAGAATCAAAGTTTATCGCTTAAATAAGACAAA
1691866 CAT-GAATACTTATACTATTCCCCATTATTTTCAAGATTACGCACTTTAAACATAGTCTTC-TCA
66 CATCGAATACTTATACTATTCCCCATTATTTTCAAGATTACGCA-TTTAAACATAGTCTTCTTCA
1691929 CTAGGATACATGATATTGGTGCTTTGGAT
130 CTAGGATACATGATATTGGTGCTTTGG-T
* * * * * ** * *
1691958 TGACAAGAAAGGCTTTTTTCCCACCAATTTTTG-TA-AAGTCTAAGTTT-GCGCCACAAATGAGT
1 TCACAAGAAAAGCTTTTTT-CCA-CTATTTTTGATAGAA-TCAAAGTTTATCG-CTTAAATAAGA
* * ** ** * * * * *
1692020 CAAACGTGGATTATA-TTAT--TGA-TCTTCATTCATTTT-GTGATTAGGCATTAAAAAAACATT
62 CAAACATCGA--ATACTTATACT-ATTCCCCATT-ATTTTCAAGATTACGCATT-TAAACATAGT
* * * * **
1692080 C-TCTTCAATAAGATTA-ATGATAATGGTGATTTTCTT
122 CTTCTTCACTAGGA-TACATGATATTGGTG-CTTTGGT
* * * *** * *
1692116 TCGCATGGAAAGCTTTTCTTTGCC-CTATTTTCCCTAAAATCAAAGTTTATCCCTTAAATAAGAC
1 TCACAAGAAAAGC-TTT-TTT-CCACTATTTTTGATAGAATCAAAGTTTATCGCTTAAATAAGAC
* * * * * ** *
1692180 AAGCATCG-ATTCTCGTA-AC-AATCTCCATTGTTTTCAAGATTGA-G-ATCCAAA-A-AGACAT
63 AAACATCGAATACT--TATACTATTCCCCATTATTTTCAAGATT-ACGCATTTAAACATAGTC-T
* * * * *
1692238 TCCATTCATTAGAATACATGACAGTGAT-CGTTTGGT
124 T-C-TTCACTAGGATACATGATATTGGTGC-TTTGGT
*
1692274 GTCACAAGAAAAGCTTTTTTCCACTATTTTTGATAGAATCAAAGTTTATTGCTTAAATAAGACAA
1 -TCACAAGAAAAGCTTTTTTCCACTATTTTTGATAGAATCAAAGTTTATCGCTTAAATAAGACAA
1692339 ACAT-GAATACTTATACTATTCCCCATTATTTTCAAGATTACGCACTTTAAACATAGTCTTC-TC
65 ACATCGAATACTTATACTATTCCCCATTATTTTCAAGATTACGCA-TTTAAACATAGTCTTCTTC
1692402 ACTAGGATACATGATATTGGTGCTTTGGAT
129 ACTAGGATACATGATATTGGTGCTTTGG-T
* *
1692432 TGACAAGAAAGGCTTTTTTCC
1 TCACAAGAAAAGCTTTTTTCC
1692453 CACCAATTTT
Statistics
Matches: 363, Mismatches: 88, Indels: 88
0.67 0.16 0.16
Matches are distributed among these distances:
155 4 0.01
156 9 0.02
157 136 0.37
158 101 0.28
159 91 0.25
160 16 0.04
161 6 0.02
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (157 bp):
TCACAAGAAAAGCTTTTTTCCACTATTTTTGATAGAATCAAAGTTTATCGCTTAAATAAGACAAA
CATCGAATACTTATACTATTCCCCATTATTTTCAAGATTACGCATTTAAACATAGTCTTCTTCAC
TAGGATACATGATATTGGTGCTTTGGT
Found at i:1699549 original size:159 final size:157
Alignment explanation
Indices: 1698416--1704766 Score: 718
Period size: 159 Copynumber: 40.1 Consensus size: 157
1698406 CACAATCCTT
* * * *
1698416 TCATTAGGATACATGGCATTGATGCTTTAGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTTG
* * * * *
1698481 ATAGAATCAAAGTTTATCCCTTAAATAAGTCAACCATGAATACTCGTACTATTCTGCATTCTTTT
66 ATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTTT
* ** *
1698546 GTAGATTAGGCATTTTAAACTGTGTCTTC
131 GAAGATTAGGCATTAAAAAC-AT-TCTTC
* * * * * ** * *
1698575 TCGTTAGGATACACGAAATTGGTGCTTGGGTTTTGCAAGAACGGCTTTT-TTCCCACCAATTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACC-GTTTTT
* * * * * * * * * *
1698639 -ACA-AAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTA-TTTGTCTTCATTCA
65 GATAGAA-TCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTAT-TCTCCATTC-
* *
1698701 TTTTG-GGATTGGGCACTATAAAAACATTCTTC
127 TTTTGAAGATTAGGCA-T-TAAAAACATTCTTC
* * * ** * ** ** ** *
1698733 TTATTAAGATTA-TTGATGTTGATGATTTTCTTTTGCATTCAAAT-CTTTTCTTTTGA-TGATTT
1 TCATTAGGA-TACATGACATTGATGCTTTGGTTTTGCA-AGAAATGCTTTTCTTTCCACCG-TTT
*** * * * * * * *
1698795 TCCTTAAAATCAAGGTCCATCCCCTAAATAAGCCAAGCATTG-ATTCTCGCAAC-AATCTCCATT
63 TTGATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACA-TGAATTCTCG-TACTATTCTCCATT
* * * * * *
1698858 CATTTCAAGATT-GGGATCCAAAAACACAATC-CC
126 CTTTTGAAGATTAGGCAT--TAAAA-ACATTCTTC
* * * *
1698891 TTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGTTTTTCTTTCCACCGTTTTT
1 -TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
* * * * * * *
1698956 GATAGAATCAAAGTTTATCCCTAAAATAAGTCAACCATGAATACTCATACTATTCCCCATTCTTT
65 GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTT
* ** *
1699021 TGTAGATTAGGCATTTTAAAC-TGTGTTC
130 TGAAGATTAGGCATTAAAAACAT-TCTTC
* * * * ** *
1699049 TCGTTATGG-TACACGACATTGGTGCTTTAGTTTTGCAAGAACGGC--TT-TTTCCACCAATTTT
1 TCATTA-GGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACC-GTTTT
* * * * * * * * ** * **
1699110 TGCA-A-AGTCAAAATTCATGCCTCAAATGAGCCGAACATGGATTCTAGTTTTGTTCTTTATTCA
64 TG-ATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTC-
* *
1699173 TTTTG-TGATTAGGCTATATAAAAACATTCTCC
127 TTTTGAAGATTAGGC-AT-TAAAAACATTCTTC
* * * * ** * *
1699205 TTATTAAGATTA-ATGATATT-AGTGATTTTCTTTTGCATGGAAAT-CTTTTCTTTGC-CC-TAT
1 TCATTAGGA-TACATGACATTGA-TGCTTTGGTTTTGCA-AGAAATGCTTTTCTTTCCACCGT-T
** * * * * * *
1699265 TTTTCTTGAAATCAAAGTTCATCCCTTAAAGAAGACAAGCATCG-ATTCTCGCAAC-AATCTCCA
62 TTTGATAG-AATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCG-TACTATTCTCCA
* * * * * *
1699328 TTCATTTCAAGATT-GGGATCCAAAACCACAATC-GC
124 TTCTTTTGAAGATTAGGCAT-TAAAA--ACATTCTTC
* * * *
1699363 TTCATTAAGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTT
1 -TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
* * * *
1699428 GATAGAATCAAAGTTTATCCCTTAAATAAGTCAAACATGAATACTCGTACTATTCCCCATTCTTT
65 GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTT
* ** *
1699493 TGAAGATTAGTCATTTTAGACAGTGTCTTC
130 TGAAGATTAGGCATTAAAAACA-T-TCTTC
* * ** *
1699523 TCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAACGGC-TTT-TTTCTCACCAATTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTC-CACC-GTTTT
* * * ** * * * * ** * **
1699586 TGCA-A-AGTCAAATTTCGTGACTCAAATGAGCCAAACATGGATTCTAGTTTTGTTCTTTATTCA
64 TG-ATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTC-
* * *
1699649 TTTTG-TGATTAGGCTCTATAAAAACATTCTCC
127 TTTTGAAGATTAGGC-AT-TAAAAACATTCTTC
* * * * * * ** * **
1699681 TTATTAAGATTA-ATGATATTGGTGATTCT-CTTTTATATGGAAAT-CTTTTCTTTCC-CTATTT
1 TCATTAGGA-TACATGACATTGATGCTT-TGGTTTTGCA-AGAAATGCTTTTCTTTCCACCGTTT
* * * ** * *
1699742 TT-CTTGAAATCAAAGTTCATCCCTTAAAGAAGATAAGCATCG-ATTCTCGTAAC-AATCTCCAT
63 TTGATAG-AATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCGT-ACTATTCTCCAT
* * * *
1699804 TGTTTTCAAGATTAGG-ATCCAAAAACACAGTCTAT-
125 TCTTTTGAAGATTAGGCAT--TAAAA-ACATTCT-TC
* * * *
1699839 TCATTAGGATACATGGCAGTT-ATGCTTTGGTGTCGCAAGAAAAGCATTTT-TTT-CACCGTTTT
1 TCATTAGGATACATGACA-TTGATGCTTTGGTTTTGCAAGAAATGC-TTTTCTTTCCACCGTTTT
** * * * *
1699901 TGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAAGAATACT--TACAGTATTC-CCATTC
64 TGATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTAC--TATTCTCCATTC
* * * *
1699963 TTTTCAGGATTAAGCACTT-TAAACATAGTCTTC
127 TTTTGAAGATTAGGCA-TTAAAAACAT--TCTTC
* * * * * * * * * *
1699996 TCACTATGATAAACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCA-AGAAATTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCG---TTT
* * * * * * * * ** **
1700059 TTG-TA-AAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA-TCTTAATT
63 TTGATAGAA-TCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACT-ATTCTCCA-T
* * * *
1700121 TATTTTG-TGATTAGGCACAATAAAAACATTCTCC
125 TCTTTTGAAGATTAGG--CATTAAAAACATTCTTC
* ** * * * ** *** * *
1700155 TCATTAAGATTTATGATAGTGATGATTTTCTTTTGTGTTGAAAT-CTTTTGTTTGC-CC-TATTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTG-CAAGAAATGCTTTTCTTTCCACCGT-TTT
** * * * * * * * * *
1700217 TCCTTAAAATCAAAGTTTATCCTTTAAATAAGACAAGCATCG-ATTCTCGCAATAATCTCCATTG
64 T-GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCGTACTATTCTCCATTC
* * * *
1700281 TTTTCAAGATT-GGGATCAAAAAACACATTC-CC
127 TTTTGAAGATTAGGCAT--TAAAA-ACATTCTTC
* **** * * * *
1700313 TTCATTAGGATACATGACTTTGATGCTTTGGGGCCGCAAGAAATGCTTTCCTTTCCTCTGTTTCT
1 -TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
* ** * * * *
1700378 GATAAAATCAAAGTTTGTCTCTTAAATCAA-ACAAACATGAATACTCATACTATTCTCCATTCTT
65 GATAGAATCAAAGTTCATCCCTTAAAT-AAGCCAAACATGAATTCTCGTACTATTCTCCATTCTT
* * *
1700442 TTCAAGATTAGACACTT-TAAACATAGTCTTC
129 TTGAAGATTAGGCA-TTAAAAACAT--TCTTC
* * * * * * * * *
1700473 TCATTAGGATACACGATAGTGGTGCATTGGTTTCGTAAGAAA-GATTTT-TTTCCCACCAATTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTT-CCACC-GTTTT
* * * * * * * * * * ** *
1700536 TG-TA-AGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATT-TTCATTC
64 TGATAGA-ATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACT-ATTCTCCATTC
*
1700598 ATTTTG-TGATTAGGCACTATAAAAACATTCTAT-
127 -TTTTGAAGATTAGGCA-T-TAAAAACATTCT-TC
* * * * ** * *
1700631 TCTTTAAGATTA-ATGATATTGATGGTTTTCTTTTGCATGAAAAT-CTTTTCTTTGC-CC-TATT
1 TCATTAGGA-TACATGACATTGATGCTTTGGTTTTGCAAG-AAATGCTTTTCTTTCCACCGT-TT
** * * * * * *
1700692 TTCCTTAAAAT-AAAGTCCATCCCTAAAATAAGACAAGCATCG-ATTCTCGTAAC-AATCTCCAT
63 TT-GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCGT-ACTATTCTCCAT
***** * *
1700754 TCTTTCCTTTATT-GGGATCCAAAAACACATTCTAT-
125 TCTTTTGAAGATTAGGCAT--TAAAA-ACATTCT-TC
* * * *** ** * ** *
1700789 TCATTAGGATACAAGACAGTGATGCTTTGGTGTCATAAGAAAACCTTTT-TTTGCACTTTTTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTTG
* * ** * ** *
1700853 ATAGAATCAAAGTTTATCTCC-TAAACT-TGAAAAACATGAATACTTATACTATTCCCCATTCTT
66 ATAGAATCAAAGTTCATC-CCTTAAA-TAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTT
* * * * * *
1700916 TTCAAGATTCAGCTCTTTAAACATAGTCTTC
129 TTGAAGATT-AG-GCATTAAAAACATTCTTC
* ** * * * * * ****
1700947 TCACTAGGATACACAATATTGGTGCTTTCGTTTCGCAAGAAAGGC-TTT-TTTCCTAAAAAAATT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCC---ACCGTTT
* * * * * * * * * ** *
1701010 TTG-TA-AGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATAT-TAGTTTTGA-TCGT-CT
63 TTGATAGA-ATCAAAGTTCATCCCTTAAATAAGCCAAACATGAAT-TCTCGTACT-ATTC-TCCA
* *
1701070 TTCATTTTG-TGATTAGGCACTATAAAAACATTCTCC
124 TTC-TTTTGAAGATTAGGCA-T-TAAAAACATTCTTC
* * * * * * * *
1701106 TCTTTAAGATTA-ATGATATTGATGATCTT-CTTTTCCATTGAAAT-CTTTTCTTTGC-CC-TAT
1 TCATTAGGA-TACATGACATTGATGCT-TTGGTTTTGCA-AGAAATGCTTTTCTTTCCACCGT-T
* * * ** *
1701166 TTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCG-ATTGC-CGTAAC-AATCTCC
62 TTT-GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATT-CTCGT-ACTATTCTCC
* **** *
1701228 ATTCTCGTAATGAGGAGAATGTATATTTTTCCAAAAATACATT-TTAT
123 ATTCT--T-TTGA--AG-AT-TA-GGCATT---AAAA-ACATTCTT-C
* * * ** *
1701275 TCATTAGGATACATGACAGTGATGCCTTGGTGTCACAAGAAAAGCTTTT-TTTCCACCGTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTTG
* * * * ** * * *
1701339 ATAGAATCAACGGTT-GTCTCTTAAATAAGACAAACATGAATAGTCCTACTATTCCCCATTTTTT
66 ATAGAATCAA-AGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTT
* * * * *
1701403 TCAAGATTCGACACGTTTAAACACAATCTTC
130 TGAAGATTAGGCA---TTAAAAACATTCTTC
* * * * * * * * * * *
1701434 TCACTAGGATACACGATATTGGTACTTTGGATTCGCAAG-AAGGACATTTC-TCCCACCAATTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATG-CTTTTCTTTCCACC-GTTTT
* * * * * * * *
1701497 T-ATA-AAGTCTAAGTT--TGCGCCTCAAATAAGCTAAACATGGAATT-TAGCATTGA-TCTTCT
64 TGATAGAA-TCAAAGTTCAT-C-CCTTAAATAAGCCAAACAT-GAATTCTCGTACT-ATTCTCCA
* *
1701556 TTCATTTTG-TGATTAGGCACTATAAAAACATTCTCC
124 TTC-TTTTGAAGATTAGGCA-T-TAAAAACATTCTTC
* * * ** *
1701592 TTATT-GAGATTA-ATGATATTGATGACTTT-CTTTTGCATTA-AAAAACTTTTCTTTCC-TCGA
1 TCATTAG-GA-TACATGACATTGATG-CTTTGGTTTTGCA--AGAAATGCTTTTCTTTCCACCG-
*** * * * * ** *
1701652 TTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCG-ATTCTCACAAC-AATCTCC
60 TTTTTGATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTC-GTACTATTCTCC
* * * * *
1701715 ATTCTTTTCAAG-TTTGGGATCCAAAAACACATTATAT-
123 ATTCTTTTGAAGATTAGGCAT--TAAAA-ACATTCT-TC
* * * ** * * **
1701752 TCATTAGAATACATGAAAGTGAT-CATTTGGGGTCGCAAGAGCA-GC-TTTCTTTCCACTATTTT
1 TCATTAGGATACATGACATTGATGC-TTTGGTTTTGCAAGA-AATGCTTTTCTTTCCACCGTTTT
* ** * ** *
1701814 TGATAGAATCAAGGTTTGTCCCTTAAATAAGACAAACATGAATTCTTATACTATTC-CCAATTTT
64 TGATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCC-ATTCT
* *
1701878 TTTCAAGATTAGGCACTT-TAAACATAGTCTTC
128 TTTGAAGATTAGGCA-TTAAAAACAT--TCTTC
* * * * * * ** * ** * * * **
1701910 TTACTAGTATGCACGATATTGGGGCTTTGGATTCACCAGAAAGGCTTTT-TTCCCACCAACTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACC-GTTTTT
* * * * * * *
1701974 G-TA-AATTCTAAGTTC-GCACCTCAAATGAGCC-AA-ATGAGGATTCTAGTATTTATT-TTCAT
65 GATAGAA-TCAAAGTTCATC-CCTTAAATAAGCCAAACATGA--ATTCTCGTA-CTATTCTCCAT
* *
1702033 TCATTTTG-TGATTAGGCACTATATAAACATT-TTCC
125 TC-TTTTGAAGATTAGGCA-T-TAAAAACATTCTT-C
* * * * ** * *
1702068 TCATTAAGATTA-TTGATATTGATGATTTTCTTTTGCATTGAAAT-CTTTTCTTTGC-CC-TATT
1 TCATTAGGA-TACATGACATTGATGCTTTGGTTTTGCA-AGAAATGCTTTTCTTTCCACCGT-TT
** * ** * * * *
1702129 TTCCTTAAAATCAAAGTTTGTCCCTTAAATAAGACAAGCATCG-ATTCTCGCAAC-AATCTCCAT
63 TT-GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCG-TACTATTCTCCAT
* * * *
1702192 TGTTTTCAAGATT-GGGATTAAAAAACACATTC-CC
125 TCTTTTGAAGATTAGGCATT--AAAA-ACATTCTTC
* * * * * ** * *
1702226 TTCATTTGGATACAAGCCTTTGATGCTTTGGTGTCACAAGAAATGCTTTCCTTTCCACCGTTTCT
1 -TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
** * * * * * * *
1702291 GATAGAATCAAAGTTTGTCTCTTAAGTCAGACAAACATGAATACTCATACTAATCTCCATTCTTT
65 GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTT
* *
1702356 TCAAGATTAGGCACTT-TAAACATAGTCTTC
130 TGAAGATTAGGCA-TTAAAAACAT--TCTTC
** * * * *
1702386 TCATTAGGATACATGATGTTCG-TGCTTTGGTTTCGCAAGAAA-GGTTTT-TATACCACCAATTT
1 TCATTAGGATACATGACATT-GATGCTTTGGTTTTGCAAGAAATGCTTTTCT-TTCCACC-GTTT
* * * * * * * * * * * *
1702448 TT-CTA-AGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGA-TCTTCATT
63 TTGATAGA-ATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACT-ATTCTCCATT
* * *
1702510 CACTTTG-TGATTAGGCA--AAAAACATTCTCC
126 C-TTTTGAAGATTAGGCATTAAAAACATTCTTC
* * * * ** * * *
1702540 TCATTAAGATTA-ACGATATTGATGATTTTCTTTCGCATGAAAAT-CTTTTCTTT--ACCTTATT
1 TCATTAGGA-TACATGACATTGATGCTTTGGTTTTGCAAG-AAATGCTTTTCTTTCCACCGT-TT
** * * ** * ** ** *
1702601 TTCCTTAAAACCAAAGTTCATCCCTTAAATAAGAGAAGCATCTATTCTTATAAC-AATCTCCATT
63 TT-GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGT-ACTATTCTCCATT
** * * *
1702665 CTTTCCAAG-TTTGGGATCCAAAAACACATTCTAT-
126 CTTTTGAAGATTAGGCAT--TAAAA-ACATTCT-TC
* * * *** * ** **
1702699 TCATTA-GA-ACGTAGGACAGTT-ATGATTTGGTGTCATAAGAAAAGCTTTT-TTTTTACTATTT
1 TCATTAGGATAC--ATGACA-TTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTT
** * * * * * ** *
1702760 TTGATAGAATC-AAGTTTGTCTCTTAAGTAAGACAAACATGTATACTTATACTATTCCCCATTCT
63 TTGATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCT
* *
1702824 TTTAAAGATTAGGCACTT-TAAACATAGTCTTC
128 TTTGAAGATTAGGCA-TTAAAAACAT--TCTTC
* * * * * * ** * *
1702856 TCACTAGGATACACGATATTGGTGCTTTAGATTCACAAGAAATGCTTTT-TTCCCACCAATTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACC-GTTTTT
* * * * * * * *
1702920 G-TA-AATTCTATG-TCAGCACCTTAAATGAGCCAAACGTGGATTCTAGTATTTATT-T-CATTC
65 GATAGAA-TCAAAGTTCATC-CCTTAAATAAGCCAAACATGAATTCTCGTA-CTATTCTCCATTC
* **
1702980 ATTTTG-TGATTAGGCACTATAAAAACATTCCCC
127 -TTTTGAAGATTAGGCA-T-TAAAAACATTCTTC
* * * * ** *
1703013 TCATTAAGATTA-TTGATATTGATGATTTTCTTTTGCATTA-AAAT-CTTTTCTTTGC-CC-TAT
1 TCATTAGGA-TACATGACATTGATGCTTTGGTTTTGCA--AGAAATGCTTTTCTTTCCACCGT-T
** * * * * * ** *
1703073 TTTCCTTAAAATCAACGTTCATCCCCTAAATATGCCAAGCATCG-ATTCTCACAAC-AATCTCCA
62 TTT-GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTC-GTACTATTCTCCA
* * * * * *
1703136 TTCATTTCAAGATT-GGGATCCAAAAACACAATC-CC
124 TTCTTTTGAAGATTAGGCAT--TAAAA-ACATTCTTC
* * * *
1703171 TTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTGCACCGTTTTT
1 -TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
* * * * * * * *
1703236 TATAGAATCAAAGTTTACCCCTTAAATAAGTCAACCATG-ATACTCATACTATTCCCCATTCTTT
65 GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTT
* ** *
1703300 TGTAGATTAGGCATTTTAAATAGTGTCTTC
130 TGAAGATTAGGCATTAAAAACA-T-TCTTC
** * * * * * * * *
1703330 TTGTTAGGATATA-GATATTGGTGCTTTGGTTTTACAAG-AACGACTTTT-TTCCCTCCAATTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATG-CTTTTCTTTCCACC-GTTTT
* * * * * * * ** * **
1703392 TGCA-ATG--TCAAAATTCGTGCCTCAAA-ACAGCCAAACCTGGATTCTAGTTTTGTTCTTTATT
64 TG-ATA-GAATCAAAGTTCATCCCTTAAATA-AGCCAAACATGAATTCTCGTACTATTCTCCATT
* * *
1703453 CATTTTG-TGATTAGGCTCTATAAAAACATTCTCC
126 C-TTTTGAAGATTAGGC-AT-TAAAAACATTCTTC
* * * * ** * *
1703487 TTATTAAGATA-ATGATATT-AGTGATTTTCTTTTGCATGGAAAT-CTTTTCTTTGC-CC-TATT
1 TCATTAGGATACATGACATTGA-TGCTTTGGTTTTGCA-AGAAATGCTTTTCTTTCCACCGT-TT
** * * * * * * * *
1703547 TTTCTTGAAATCAAAGTTCATCCCCTAAAGAAGGCAAGCATCG-ATTCTCGCAAC-AATCTCCAC
63 TTGATAG-AATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCG-TACTATTCTCCAT
* * * * * *
1703610 CCATTTCAAGATT-GGGATCCAAAAACACAATCCCTT-
125 TCTTTTGAAGATTAGGCAT--TAAAA-AC-AT-TCTTC
* * * * ** *
1703646 T-ATTATGATACATGGCATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTATATCGTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTTG
* * ** * * *
1703710 ATAGAATCAAAGTTTATCCCTTAAATAAGTCAAACGCGAATACTCGTACTCTTCCCCATTCTTTT
66 ATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTTT
**
1703775 GAAGATTAGGCATTTTAAACAGTGTCTTC
131 GAAGATTAGGCATTAAAAACA-T-TCTTC
* ** * * * * * *
1703804 GCATTAGGATACACAATATTGGTGCTTCGGTTTTGCAAG-AACGACTTTT-TTCCCACCAATTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATG-CTTTTCTTTCCACC-GTTTT
* * * * * * * * * **
1703867 TGCA-A-AGTCAAAGTTAATGCCTCAAATGAGCCAAACATGGATTCTAGTTCTGTTCTTTATTCA
64 TG-ATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTC-
* *
1703930 TTTTG-TGATTAGGC-TCTATAAAACATTCTCC
127 TTTTGAAGATTAGGCAT-TA-AAAACATTCTTC
* * * * ** * * *
1703961 TTATTAAGATTA-ATGATATT-AGTGATTTTCTTTTACATGGAAAT-CTTTTCTTTGCC-CTGTT
1 TCATTAGGA-TACATGACATTGA-TGCTTTGGTTTTGCA-AGAAATGCTTTTCTTT-CCACCGTT
* * * ** * *
1704022 TTT-CTTGAAATCAAAGTTCATCCCTTAAAGAAGAGAAGCATCG-ATTCTCGTAAC-AATCTCCA
62 TTTGATAG-AATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTCGT-ACTATTCTCCA
* * *
1704084 TTGTTTTCAAGATGT-GG-ATCCAAAAACACATTCTAT-
124 TTCTTTTGAAGAT-TAGGCAT--TAAAA-ACATTCT-TC
* * * * * * *
1704120 TCATTAGGATACATGGCAGTT-ATACTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCACCATTTTT
1 TCATTAGGATACATGACA-TTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
** * * * * ** *
1704183 GATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAAGAATACTTATAGTATTC-CCATTCTTT
65 GATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTT
* * * *
1704247 TCAGGATTAAGCACTT-TAAACATAGTCTTC
130 TGAAGATTAGGCA-TTAAAAACAT--TCTTC
* * * * * * * * * ****
1704277 TCACTATGATAAACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCTCAAGAAAATTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTT-TCCA-CCGTTTT
* * * * * * * * ** **
1704341 TG-TA-AAGTCAAAATTCGTACCTCAAATGAGCCAAACGTGGATTCTAGTTTTGA-TCTTAATTC
64 TGATAGAA-TCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACT-ATTCTCCATTC
* * * *
1704403 ATTTTG-TGACTAGGCACAATAAAAACATTCTCC
127 -TTTTGAAGATTAGG--CATTAAAAACATTCTTC
* ** * * * ** ** *
1704436 TCATTAAGATTTATGATAGTGATGATTTTCTTTTATG-TTGAAAT-CTTTTC-ATCGC-CC-TAT
1 TCATTAGGATACATGACATTGATG-CTTTGGTTT-TGCAAGAAATGCTTTTCTTTC-CACCGT-T
** * * * ** *
1704496 TTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-ATTCTCACAAC-AATCTCCA
62 TTTGAT-AGAATCAAAGTTCATCCCTTAAATAAGCCAAACAT-GAATTCTC-GTACTATTCTCCA
** * * *
1704559 TGGTTTTGAAGATT-GGGATCAAAAAACACATTC-CC
124 TTCTTTTGAAGATTAGGCAT--TAAAA-ACATTCTTC
* *** * **
1704594 TTCATTAGGATACATGACTTTGATGCTTTGGTGCCGCAAGAAATGCTTTCCTTTCCACCGTTTCA
1 -TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTT
** * * **
1704659 GATAGAATCAAAGTTTGTCTCTTAAATCAA-ACAAACATGAACACTCGTACTATTCTCCATTCTT
65 GATAGAATCAAAGTTCATCCCTTAAAT-AAGCCAAACATGAATTCTCGTACTATTCTCCATTCTT
* *
1704723 TTCAAGATTAGGCACTT-TAAACATAGTCTTC
129 TTGAAGATTAGGCA-TTAAAAACAT--TCTTC
*
1704754 TCCTTAGGATACA
1 TCATTAGGATACA
1704767 CGATATTGGT
Statistics
Matches: 4257, Mismatches: 1432, Indels: 1006
0.64 0.21 0.15
Matches are distributed among these distances:
152 1 0.00
153 8 0.00
154 93 0.02
155 82 0.02
156 128 0.03
157 592 0.14
158 1367 0.32
159 1558 0.37
160 267 0.06
161 42 0.01
162 4 0.00
163 4 0.00
164 1 0.00
165 5 0.00
166 4 0.00
167 3 0.00
168 57 0.01
169 40 0.01
170 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (157 bp):
TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAATGCTTTTCTTTCCACCGTTTTTG
ATAGAATCAAAGTTCATCCCTTAAATAAGCCAAACATGAATTCTCGTACTATTCTCCATTCTTTT
GAAGATTAGGCATTAAAAACATTCTTC
Found at i:1707594 original size:13 final size:13
Alignment explanation
Indices: 1707576--1707605 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1707566 ACATAAGTGT
1707576 TGTATCGATACAA
1 TGTATCGATACAA
1707589 TGTATCGATACAA
1 TGTATCGATACAA
1707602 TGTA
1 TGTA
1707606 AGCTACTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1707661 original size:13 final size:13
Alignment explanation
Indices: 1707643--1707667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1707633 ATTACTCAAA
1707643 TGTATCGATACAT
1 TGTATCGATACAT
1707656 TGTATCGATACA
1 TGTATCGATACA
1707668 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1715012 original size:33 final size:33
Alignment explanation
Indices: 1714975--1715496 Score: 287
Period size: 33 Copynumber: 15.8 Consensus size: 33
1714965 ATCTCTTCTC
*
1714975 AAAGTCCACGACTCAGTGGCATC-TTTCCTTCTT
1 AAAGTCCACAACTCAGTGGCATCTTTTCCTT-TT
* * * * *
1715008 AAAGTCCACGACTTAATGGCATCTTGT-C--TC
1 AAAGTCCACAACTCAGTGGCATCTTTTCCTTTT
* *
1715038 AAAGTCCACAATTTAGTGGCATCTCTTTCC----
1 AAAGTCCACAACTCAGTGGCATCT-TTTCCTTTT
** **
1715068 AAAGTCCATGACTCAGTGGCATCTTTTCCTCCT
1 AAAGTCCACAACTCAGTGGCATCTTTTCCTTTT
* * *
1715101 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAAGTCCACAACTCAGTGGCATCTTTTCCTTTT
* * *
1715133 CAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCAGTGGCA-TC-TTTT-CCTTTT
* * * * *
1715169 AAAGTCCATAACCCCGTGGTACCTTGTTCCTTTT
1 AAAGTCCACAACTCAGTGGCATCTT-TTCCTTTT
* * *
1715203 -AAGTCCACGACTCTA-TGGCACCTTTT--TTTC
1 AAAGTCCACAACTC-AGTGGCATCTTTTCCTTTT
* *
1715233 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCAGTGGCA-TC-TTTT-CCTTTT
*
1715269 AAAGTCCACAACTTC-GTGGCATCTCTTTCC-TTC
1 AAAGTCCACAAC-TCAGTGGCATCT-TTTCCTTTT
* *
1715302 AAAGTCCATAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCAGTGGCA-TC-TTTT-CCTTTT
* * * *
1715338 AAAGTCCACAACCCCGTGGCACCTTGTT-TTTTT
1 AAAGTCCACAACTCAGTGGCATCTT-TTCCTTTT
** * * *
1715371 TGAGTCCACGACTCTGTGGCA-C-CTT-CTTTT
1 AAAGTCCACAACTCAGTGGCATCTTTTCCTTTT
* *
1715401 CAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTT
1 -AAAGTCCACAACTCAGTGGCA-TCTTTT--CCTTTT
*
1715438 AAAGTCCACAACTTC-GTGGCACCTTGTTCCTTTT
1 AAAGTCCACAAC-TCAGTGGCATCTT-TTCCTTTT
*
1715472 -AAGTCCATAACTTC-GTGGCATCTTT
1 AAAGTCCACAAC-TCAGTGGCATCTTT
1715497 CACCCTTTTC
Statistics
Matches: 388, Mismatches: 64, Indels: 75
0.74 0.12 0.14
Matches are distributed among these distances:
29 5 0.01
30 51 0.13
31 34 0.09
32 33 0.09
33 125 0.32
34 29 0.07
35 21 0.05
36 81 0.21
37 9 0.02
ACGTcount: A:0.20, C:0.31, G:0.14, T:0.34
Consensus pattern (33 bp):
AAAGTCCACAACTCAGTGGCATCTTTTCCTTTT
Found at i:1715044 original size:30 final size:29
Alignment explanation
Indices: 1714965--1715125 Score: 126
Period size: 30 Copynumber: 5.2 Consensus size: 29
1714955 AATTCTTCAA
1714965 ATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 ATCT-TTCTCAAAGTCCACGACTCAGTGGC
* *
1714995 ATCTTTCCTTCTTAAAGTCCACGACTTAATGGC
1 ATCTTT-C-TC--AAAGTCCACGACTCAGTGGC
* * *
1715028 ATCTTGTCTCAAAGTCCACAATTTAGTGGC
1 ATCTT-TCTCAAAGTCCACGACTCAGTGGC
*
1715058 ATCTCTT-TCCAAAGTCCATGACTCAGTGGC
1 ATCT-TTCT-CAAAGTCCACGACTCAGTGGC
* * *
1715088 ATCTTTTCCTCCTAAGTCCACAACTCCGTGGC
1 ATC-TTT-CT-CAAAGTCCACGACTCAGTGGC
*
1715120 ACCTTT
1 ATCTTT
1715126 TTCTTTTCAA
Statistics
Matches: 107, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
29 3 0.03
30 49 0.46
31 7 0.07
32 23 0.21
33 24 0.22
34 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.32
Consensus pattern (29 bp):
ATCTTTCTCAAAGTCCACGACTCAGTGGC
Found at i:1715186 original size:69 final size:67
Alignment explanation
Indices: 1715101--1715496 Score: 337
Period size: 69 Copynumber: 5.9 Consensus size: 67
1715091 TTTTCCTCCT
*
1715101 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTT-CCT
1715166 TTTA
64 TTTA
* * * * * **
1715170 AAGTCCATAACCCCGTGGTACCTTGTTCCTTTTAAGTCCACGACTCTATGGCAC-C-TTTT--TT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCTT
*
1715231 TCA
65 TTA
* * *
1715234 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTTCGTGGCA-TCTCTTTC
1 AAGTCCACAACTCCGTGGCAC-CTTTTT--CTTTT-AAGTCCACAACTCCGTGGCACTCTTTTTC
*
1715298 C-TTCA
62 CTTTTA
* *
1715303 AAGTCCATAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCAC-CTTGTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTT--CTTTT-AAGTCCACAACTCCGTGGCACTCTT-TTT
*
1715367 --TTTTT
61 CCTTTTA
* * * * ** * *
1715372 GAGTCCACGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACTCCGTGGCACTCTTTT-TCCTT
1715436 TTA
65 TTA
* * * *
1715439 AAGTCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCATAACTTCGTGGCA-TCTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTTAAGTCCACAACTCCGTGGCACTCTTT
1715497 CACCCTTTTC
Statistics
Matches: 261, Mismatches: 48, Indels: 37
0.75 0.14 0.11
Matches are distributed among these distances:
64 44 0.17
65 8 0.03
66 5 0.02
67 45 0.17
68 15 0.06
69 134 0.51
70 10 0.04
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.35
Consensus pattern (67 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCTTT
TA
Found at i:1715319 original size:169 final size:167
Alignment explanation
Indices: 1715101--1715516 Score: 600
Period size: 169 Copynumber: 2.5 Consensus size: 167
1715091 TTTTCCTCCT
* * * *
1715101 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 AAGTCCACAACTTCGTGGCACC-TTTTC-CTTCAAGTCCATAACTCCGTGGCACTCTTTTTCCCT
* * *
1715166 TTTAAAGTCCATAACCCCGTGGTACCTTGTTCCTTTTAAGTCCACGACTCTATGGCACCTTTTTT
64 TTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCTATGGCACCTTCTTT
*
1715231 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
129 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTA
*
1715270 AAGTCCACAACTTCGTGGCATCTCTTTCCTTCAAAGTCCATAACTCCGTGGCACTCTTTTTCCCT
1 AAGTCCACAACTTCGTGGCACCT-TTTCCTTC-AAGTCCATAACTCCGTGGCACTCTTTTTCCCT
** * *
1715335 TTTAAAGTCCACAACCCCGTGGCACCTTGTTTTTTTTGAGTCCACGACTCTGTGGCACCTTCTTT
64 TTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCTATGGCACCTTCTTT
1715400 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTA
129 TCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTA
* * **
1715439 AAGTCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCATAACTTCGTGGCA-TCTTTCACCCT
1 AAGTCCACAACTTCGTGGCACCTT-TTCC-TTCAAGTCCATAACTCCGTGGCACTCTTTTTCCCT
*
1715503 TTTCAAAGCCCACA
64 TTT-AAAGTCCACA
1715517 CAAGTCGGTG
Statistics
Matches: 223, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
168 17 0.08
169 204 0.91
170 2 0.01
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (167 bp):
AAGTCCACAACTTCGTGGCACCTTTTCCTTCAAGTCCATAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCTATGGCACCTTCTTTTC
AAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTA
Found at i:1715477 original size:100 final size:102
Alignment explanation
Indices: 1715083--1715494 Score: 357
Period size: 100 Copynumber: 4.1 Consensus size: 102
1715073 CCATGACTCA
* * * * * *
1715083 GTGGCATCT-TTTCCTCCTAAGTCCACAACTCCGTGGCAC-CTTTT--TCTTTTCAAGCCCACAA
1 GTGGCATCTCTTTCCTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAA
* * **
1715144 CTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCATAACCCC
66 CTCCGTGGCAC-CTTGTT-CCTTTT-AAGTCCACAACTTC
* * ** * * ** * *
1715184 GTGGTACCT-TGTTCCTTTTAAGTCCACGACTCTATGGCAC-CTTTT----TTTCAAAGCCCACA
1 GTGGCATCTCT-TTCCTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACA
*
1715243 ACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTTC
65 ACTCCGTGGCAC-CTTGTT-CCTTTT-AAGTCCACAACTTC
* * *
1715284 GTGGCATCTCTTTCCTTCAAAGTCCATAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAA
1 GTGGCATCTCTTTCCTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAA
* ** * *
1715349 CCCCGTGGCACCTTGTTTTTTTTGAGTCCACGAC-TC
66 CTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTC
*
1715385 TGTGGCA-C-C-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCAC
1 -GTGGCATCTCTTTC-CTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCAC
* *
1715447 AACTTCGTGGCACCTTGTTCCTTTTAAGTCCATAACTTC
64 AACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTC
1715486 GTGGCATCT
1 GTGGCATCT
1715495 TTCACCCTTT
Statistics
Matches: 260, Mismatches: 39, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
99 3 0.01
100 161 0.62
101 20 0.08
102 44 0.17
103 4 0.02
104 5 0.02
105 23 0.09
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.35
Consensus pattern (102 bp):
GTGGCATCTCTTTCCTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAA
CTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTC
Found at i:1715535 original size:32 final size:32
Alignment explanation
Indices: 1715498--1715658 Score: 198
Period size: 32 Copynumber: 5.0 Consensus size: 32
1715488 GGCATCTTTC
*
1715498 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* **
1715530 ACCCTTTCCAAAGCCCACACAAGTCAGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
** *
1715562 ACCCTTCCCAAAGCCCACAAAAGTTGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1715594 ACCTTTTTTTAAAGCCCACACAAGTTGGTGGCA
1 ACC-CTTTTCAAAGCCCACACAAGTTGGTGGCA
**
1715627 ACCC-CCTCAAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTC-AAAGCCCACACAAGTTGGTGGCA
1715659 TCTTCCTTTA
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.75
33 27 0.24
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (32 bp):
ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1715576 original size:169 final size:165
Alignment explanation
Indices: 1715052--1715581 Score: 411
Period size: 169 Copynumber: 3.2 Consensus size: 165
1715042 TCCACAATTT
* * * ** *
1715052 AGTGGCATCTCTTTCCAAAGTCCATGACTCAGTGGCA-TCTTTTCCTCC---T-AAGTCCACAAC
1 AGTGGCACCTCTTCCCAAAGCCCACAACTCCGTGGCACTCTTTTCC-CCTTTTAAAGTCCACAAC
* * * * * ** *
1715112 TCCGTGGCACCTTTTTCTTTTC-AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCC
65 TTCGTGGCACCTCTTTC-CTTCAAAGTCCATAACTCCGTGGCACTCTTTCACCCTTTTAAAGCCC
* * * *
1715176 ATAACCCCGTGGTACCT-TGTTCCTTTTAAGTCCACGACTC
129 ACAACCCCGTGGCACCTCT-TTCC---AAAGCCCACGACTC
* ** *
1715216 TA-TGGCACCTTTTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAA
1 -AGTGGCACC-TCTTCCCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAA
* ** *
1715280 CTTCGTGGCATCTCTTTCCTTCAAAGTCCATAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCC
64 CTTCGTGGCACCTCTTTCCTTCAAAGTCCATAACTCCGTGGCACTCTTTCACCCTTTTAAAGCCC
* **** *
1715345 ACAACCCCGTGGCACCTTGTTTTTTTTGAGTCCACGACTC
129 ACAACCCCGTGGCACC---TCTTTCCAAAGCCCACGACTC
* **
1715385 TGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAAC
1 AGTGGCACC-TCTTCCCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAAC
** *
1715450 TTCGTGGCACCT-TGTTCCTTTTAAGTCCATAACTTCGTGGCA-TCTTTCACCCTTTTCAAAGCC
65 TTCGTGGCACCTCT-TTCCTTCAAAGTCCATAACTCCGTGGCACTCTTTCACCCTTTT-AAAG-C
** *
1715513 CACACAAGTCGGTGGCAACC-CTTTCCAAAGCCCAC-ACAAGTC
127 C-CACAACCCCGTGGC-ACCTCTTTCCAAAGCCCACGAC---TC
1715555 AGTGGCAACC-CTTCCCAAAGCCCACAA
1 AGTGGC-ACCTCTTCCCAAAGCCCACAA
1715582 AAGTTGGTGG
Statistics
Matches: 303, Mismatches: 41, Indels: 38
0.79 0.11 0.10
Matches are distributed among these distances:
164 6 0.02
165 25 0.08
166 7 0.02
167 2 0.01
168 26 0.09
169 208 0.69
170 8 0.03
171 14 0.05
172 6 0.02
173 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (165 bp):
AGTGGCACCTCTTCCCAAAGCCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAACT
TCGTGGCACCTCTTTCCTTCAAAGTCCATAACTCCGTGGCACTCTTTCACCCTTTTAAAGCCCAC
AACCCCGTGGCACCTCTTTCCAAAGCCCACGACTC
Found at i:1715640 original size:65 final size:63
Alignment explanation
Indices: 1715506--1715658 Score: 200
Period size: 65 Copynumber: 2.4 Consensus size: 63
1715496 TCACCCTTTT
*
1715506 CAAAGCCCACACAAGTCGGTGGCAACCCTTTCCAAAGCCCACACAAGTCAGTGGCAACCCTTCC
1 CAAAGCCCACACAAGTTGGTGGCAACCCTTTCCAAAGCCCACACAAGTCAGTGGCAACCC-TCC
* * ** **
1715570 CAAAGCCCACAAAAGTTGGTGGCAACCTTTTTTTAAAGCCCACACAAGTTGGTGGCAACCC-CC
1 CAAAGCCCACACAAGTTGGTGGCAACC-CTTTCCAAAGCCCACACAAGTCAGTGGCAACCCTCC
1715633 TCAAAAGCCCACACAAGTTGGTGGCA
1 -C-AAAGCCCACACAAGTTGGTGGCA
1715659 TCTTCCTTTA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
63 2 0.03
64 26 0.33
65 50 0.64
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (63 bp):
CAAAGCCCACACAAGTTGGTGGCAACCCTTTCCAAAGCCCACACAAGTCAGTGGCAACCCTCC
Found at i:1715776 original size:43 final size:43
Alignment explanation
Indices: 1715663--1716518 Score: 560
Period size: 43 Copynumber: 18.0 Consensus size: 43
1715653 GTGGCATCTT
*
1715663 CCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* *
1715706 CCTTGCCTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 -----CC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
*
1715755 CCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* * *
1715798 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* * *
1715847 CCTTTCAGTCCAATATCGCTGGCCTTGAATCAGCGTATTAGCACCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G--GCA
* * *
1715893 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
** *
1715939 CCTCCAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGCCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-G-CA
* * *
1715985 TTGTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* **
1716034 ACTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-G-C---A
* * *
1716083 TCATCTTTCAAGTCCAATGTAGCTGGCCTTGAATCAGCAGATTGGCA
1 -C--CTTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
**
1716130 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA-T--TG-----G-CA
* * * *
1716182 TCTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
** *
1716226 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-G-C-A
** *
1716273 CGTCATTTTTTAAAACCCAATATCGCGGGCCTTGAATCAGCATATTGGCA
1 C--C----TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* * * *
1716323 CCCTCATCTTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA
1 ----C--C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
*
1716373 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGC
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-A
* *
1716417 CTTTGTCATATTTAAGTCCAATATCGCTAGCCTTGAATCACCATATTGGCGCCTTTGTCA
1 C-----C---TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT---G-----G-CA
*
1716477 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
1716519 GTCTTTGTCA
Statistics
Matches: 648, Mismatches: 85, Indels: 155
0.73 0.10 0.17
Matches are distributed among these distances:
43 236 0.36
44 14 0.02
45 6 0.01
46 12 0.02
47 4 0.01
48 3 0.00
49 116 0.18
50 38 0.06
51 8 0.01
52 109 0.17
53 64 0.10
54 34 0.05
55 2 0.00
60 1 0.00
61 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (43 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
Found at i:1715792 original size:22 final size:22
Alignment explanation
Indices: 1715729--1715794 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
1715719 GTCCAATGTA
1715729 GCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCATATT
* *
1715751 G--GCACCTTTAAGTC--CAATATT
1 GCTG-GCCTTGAA-TCAGC-ATATT
1715772 GCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCATATT
1715794 G
1 G
1715795 GCATCTTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
20 2 0.06
21 14 0.42
22 15 0.45
23 2 0.06
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (22 bp):
GCTGGCCTTGAATCAGCATATT
Found at i:1716013 original size:52 final size:52
Alignment explanation
Indices: 1715944--1716576 Score: 606
Period size: 52 Copynumber: 12.8 Consensus size: 52
1715934 TGGCACCTCC
* *
1715944 AAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGCCATTGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
* * * **
1715996 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAAC----TC--C---
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
*
1716039 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
* * * *
1716091 CAAGTCCAATGTAGCTGGCCTTGAATCAGCAGATTGGCACC----TC--C---
1 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
*
1716135 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCATCTTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC-TTT
* * * *
1716188 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC----TC--C---
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
* *
1716231 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATTTTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA-TCTTT
** * * *
1716284 AAAACCCAATATCGCGGGCCTTGAATCAGCATATTGGCACC---CTCATCTTTT
1 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC-TTT
* * * * *
1716335 AAGCCCAATGTCGCTAGCCTTGAATCAGCACATT---G-----G-CACCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
*
1716378 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATATTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
* *
1716430 AAGTCCAATATCGCTAGCCTTGAATCACCATATTGGCGCCTTTGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
*
1716482 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
* * * * *
1716534 AAGTCTAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTT
1716577 ATCTTTAACA
Statistics
Matches: 478, Mismatches: 62, Indels: 82
0.77 0.10 0.13
Matches are distributed among these distances:
43 139 0.29
44 3 0.01
46 2 0.00
47 8 0.02
48 2 0.00
49 6 0.01
50 30 0.06
51 7 0.01
52 174 0.36
53 71 0.15
54 36 0.08
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (52 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
Found at i:1716144 original size:96 final size:95
Alignment explanation
Indices: 1715668--1716518 Score: 993
Period size: 92 Copynumber: 8.9 Consensus size: 95
1715658 ATCTTCCTTT
* * *
1715668 AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACC-TTG-CCT-TTTAAGTCCAATGTAG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTAG
* **
1715730 CTGGCCTTGAATCAGCATATTGGCACCTTT
66 CTGGCCTTGAATCAGCACATTGGCACCTCC
* * *
1715760 AAGTCCAATATTGCTGGCCTTGAATCAGCATATT-G-GCATCT-TCATCTTTAAGTCCAATGTAG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTAG
*
1715822 CTGGCCTTGAATCAGCACATTGGCACCTTTC
66 CTGGCCTTGAATCAGCACATTGGCACC-TCC
* * * *
1715853 -AGTCCAATATCGCTGGCCTTGAATCAGCGTATTAGCACC---ATCATCTTTAAGTCCAATGTAG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTAG
1715914 CTGGCCTTGAATCAGCACATTGGCACCTCC
66 CTGGCCTTGAATCAGCACATTGGCACCTCC
* *
1715944 AAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGCCATTGTCATCTTTAAGTCCAATGTAG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTAG
*
1716009 CTGGCCTTGAATCAGCACATTGGCAACTCC
66 CTGGCCTTGAATCAGCACATTGGCACCTCC
*
1716039 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTCAAGTCCAATGTA
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT-AAGTCCAATGTA
*
1716104 GCTGGCCTTGAATCAGCAGATTGGCACCTCC
65 GCTGGCCTTGAATCAGCACATTGGCACCTCC
*
1716135 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCATCTTTTAAGTCCAATGTA
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC-TTTAAGTCCAATGTA
1716200 GCTGGCCTTGAATCAGCACATTGGCACCTCC
65 GCTGGCCTTGAATCAGCACATTGGCACCTCC
* * ** *
1716231 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATTTTTTAAAACCCAATAT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA-TCTTT-AAGTCCAATGT
* * *
1716296 CGCGGGCCTTGAATCAGCATATTGGCACCCTCATC
64 AGCTGGCCTTGAATCAGCACATTGGCA-CCTC--C
* * * * *
1716331 TTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATT---G-----G-CACCTTTAAGTCCAAT
1 ----AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAAT
* * * * *
1716387 ATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATATTT
62 GTAGCTGGCCTTGAATCAGCACATTGGCACC----TC-----C
* * * *
1716430 AAGTCCAATATCGCTAGCCTTGAATCACCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTAG
*
1716495 CTGGCCTTGAATCAGCATATTGGC
66 CTGGCCTTGAATCAGCACATTGGC
1716519 GTCTTTGTCA
Statistics
Matches: 668, Mismatches: 53, Indels: 64
0.85 0.07 0.08
Matches are distributed among these distances:
90 1 0.00
91 6 0.01
92 190 0.28
93 37 0.06
94 4 0.01
95 131 0.20
96 181 0.27
97 36 0.05
98 5 0.01
99 1 0.00
100 1 0.00
101 1 0.00
103 1 0.00
104 73 0.11
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (95 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACCTCC
Found at i:1716365 original size:147 final size:146
Alignment explanation
Indices: 1715856--1716518 Score: 668
Period size: 147 Copynumber: 4.6 Consensus size: 146
1715846 ACCTTTCAGT
* * * * *
1715856 CCAATATCGCTGGCCTTGAATCAGCGTATTAGCACC-ATCATC-TTTAAGTCCAATGTAGCTGGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTTAAGTCCAATGTCGCTGGC
*
1715919 CTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGCC
66 CTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC
* **
1715984 ATT-GTCATCTTTAAGT
131 -TTCGTCATATTTAAAC
* * * ** *
1716000 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCAAC--TC--C----AAGTCCAATATCGCTGGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTTAAGTCCAATGTCGCTGGC
* * * *
1716057 CTTGAATCAGCATATTGGCGCCTTTATCATCTTTCAAGTCCAATGTAGCTGGCCTTGAATCAGCA
66 CTTGAATCAGCACATT-G-G-C---A-C--C-TCCAAGTCCAATATCGCTGGCCTTGAATCAGCA
* * *
1716122 GATTGGCACC-TC--CA-A-GT----
121 TATTGGCGCCTTCGTCATATTTAAAC
* *
1716139 CCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCATCTTTTAAGTCCAATGTAGCTG
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC--TGTCATCTTTTAAGTCCAATGTCGCTG
1716204 GCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG
64 GCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG
*
1716269 CCTTCGTCATTTTTTAAAAC
129 CCTTCGTCA-TATTT-AAAC
* * * * *
1716289 CCAATATCGCGGGCCTTGAATCAGCATATTGGCACC-CTCATCTTTTAAGCCCAATGTCGCTAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTTAAGTCCAATGTCGCTGGC
**
1716353 CTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC
66 CTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC
* **
1716418 TTTGTCATATTTAAGT
131 TTCGTCATATTTAAAC
* * *
1716434 CCAATATCGCTAGCCTTGAATCACCATATTGGCGCCTTTGTCATC-TTTAAGTCCAATATCGCTG
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC--TGTCATCTTTTAAGTCCAATGTCGCTG
*
1716498 GCCTTGAATCAGCATATTGGC
64 GCCTTGAATCAGCACATTGGC
1716519 GTCTTTGTCA
Statistics
Matches: 429, Mismatches: 55, Indels: 67
0.78 0.10 0.12
Matches are distributed among these distances:
138 31 0.07
139 69 0.16
140 4 0.01
141 2 0.00
142 3 0.01
143 6 0.01
144 31 0.07
145 39 0.09
146 6 0.01
147 131 0.31
148 43 0.10
149 31 0.07
150 33 0.08
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (146 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTGTCATCTTTTAAGTCCAATGTCGCTGGC
CTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC
TTCGTCATATTTAAAC
Found at i:1723700 original size:12 final size:11
Alignment explanation
Indices: 1723674--1723699 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1723664 TGGAACAGTC
1723674 AAAAGTCAAAA
1 AAAAGTCAAAA
1723685 AAAAGTCAAAA
1 AAAAGTCAAAA
1723696 AAAA
1 AAAA
1723700 AACAAAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAGTCAAAA
Found at i:1723713 original size:13 final size:13
Alignment explanation
Indices: 1723695--1723728 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
1723685 AAAAGTCAAA
1723695 AAAAAAACAAAACAC
1 AAAAAAAC-AAA-AC
1723710 AAAAAAACAAAAC
1 AAAAAAACAAAAC
1723723 AAAAAA
1 AAAAAA
1723729 GGTGCAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
14 3 0.16
15 8 0.42
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAC
Found at i:1723713 original size:15 final size:14
Alignment explanation
Indices: 1723694--1723728 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
1723684 AAAAAGTCAA
1723694 AAAAAAAACAAAAC
1 AAAAAAAACAAAAC
1723708 ACAAAAAAACAAAAC
1 A-AAAAAAACAAAAC
1723723 AAAAAA
1 AAAAAA
1723729 GGTGCAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAACAAAAC
Found at i:1724904 original size:16 final size:17
Alignment explanation
Indices: 1724879--1724916 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
1724869 TTGTGCTGTA
* *
1724879 ATCATGACATC-ATGAC
1 ATCATAACATCAATAAC
1724895 ATCATAACATCAATAAC
1 ATCATAACATCAATAAC
1724912 ATCAT
1 ATCAT
1724917 TATTTGCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (17 bp):
ATCATAACATCAATAAC
Found at i:1725137 original size:30 final size:31
Alignment explanation
Indices: 1725011--1725206 Score: 150
Period size: 30 Copynumber: 6.3 Consensus size: 31
1725001 AATTCTTCAA
1725011 ATCTC-TTCTCAAAGTCCACGACTCAGTGGC
1 ATCTCTTTCTCAAAGTCCACGACTCAGTGGC
* * * *
1725041 ATCTTTCCTTCTTAAAGTCCACGACTTAATGGC
1 ATC--TCTTTCTCAAAGTCCACGACTCAGTGGC
* * * *
1725074 ATC-CTGTCTCAAAGTCCACAATTTAGTGGC
1 ATCTCTTTCTCAAAGTCCACGACTCAGTGGC
1725104 ATCTCTTTC-CAAAGTCCACGACTCAGTGGC
1 ATCTCTTTCTCAAAGTCCACGACTCAGTGGC
* * *
1725134 ATCT-TTTCCTCCTAAGTCCACAACTCCGTGGC
1 ATCTCTTT-CT-CAAAGTCCACGACTCAGTGGC
* * * * *
1725166 ACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGC
1 ATCTCTTTC---TCAAAGTCCACGACTCAGTGGC
1725200 A-CTCTTT
1 ATCTCTTT
1725207 TTCCCTTTTA
Statistics
Matches: 135, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
29 3 0.02
30 50 0.37
31 4 0.03
32 24 0.18
33 33 0.24
34 20 0.15
35 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (31 bp):
ATCTCTTTCTCAAAGTCCACGACTCAGTGGC
Done.