Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 12 of 16
Found at i:1956878 original size:824 final size:825
Alignment explanation
Indices: 1955297--1956929 Score: 2131
Period size: 824 Copynumber: 2.0 Consensus size: 825
1955287 TTCGTCATTA
* *
1955297 GGATCCAAAAACACATTCTATTTATTAGGACACATGACAGTGATGCTTTGGTATCGCAAGAAAAG
1 GGATCCAAAAACACATTCTATTCATTACGACACATGACAGTGATGCTTTGGTATCGCAAGAAAAG
* * * *
1955362 CTTTTTTTCCACTGTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGATAAACATGAATACTTA
66 CTTTTTTTCCACCGTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACATAAATACTCA
* * ** *
1955427 TACCATTCCCTATTCTTTTCAAGATTAGGTACTTTAAACATAGTCTTCTCACTAGGATACACGAT
131 TACAATTCCCTATTCTTTTCAAGATTAGGCACCGTAAACATAGTCTTCTCACTAGGAGACACGAT
** * * **
1955492 ATTGTTGCTTTCATTTCGCAAGAAACGCTATTTTCCCATGAAATTTTTGTATGGTCAAAATTCAT
196 ATTAATGCTTTCATTTCGCAAAAAACGCTATTTTCCCATCAAATTTTTGTAAAGTCAAAATTCAT
* * * * **
1955557 GCCTCAAATGAGCCAAACGTGGATAGTAGTTTTCAACTTCATTCATTTTGTGATTAGGTGCTATA
261 GCCTCAAATAAGCCAAACGTGAATAG-AGTTTTCAACTTCATTCAATTCGTGATTAGGCACTATA
* * * **
1955622 AAAACATTCTCCTCTTCAACATTACTAATATTGATGATTTTCTTTTGCATTGAAATCATTTCTTT
325 AAAACATTCTCCTCATCAACATTAATAATATTGATGATTTTCTTTCGCACAGAAATCATTTCTTT
* * **
1955687 GCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAAT
390 GCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAAT
* ** * *
1955752 CTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAATGATG
455 CTCCACTCTCTTCAACATTGGGATCAAAAAACACATTCCATTCATTAGGATACATGACAATGATG
** * *
1955817 CTATGGTGTAGCAAGAAAAGCTTTTTTCTACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAT
520 CTATGGAATAGCAAGAAAAGCTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * *
1955882 TAGACAAACATGAATATTTATGCTATTCCCCATTATTTTCCAAGGTTAGGCACTTTGAACAAAGT
585 CAGACAAACATGAAAACTCATACTATTCCCCATTATTTTCCAAGATTAGGCACTTTAAACAAAGT
* * *
1955947 CTTCTCACTAGGATACATGATATTGGTGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCATGAAAA
650 CTTCTCACTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCATCAAAA
*
1956012 TTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCA
715 TTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCA
* * *
1956077 TTTTGTGTTTAGGTACTATAAAAACATTCTCCTCTTTTCAAGATTG
780 TTTTGTGATTAGGCACTATAAAAAAATTCTCCTCTTTTCAAGATTG
* * * * * *
1956123 GGATCCAAAAACACATTTTCTTCATTACGATACATGACAGTGATGCTTTGGTGTCGTAAGAAATG
1 GGATCCAAAAACACATTCTATTCATTACGACACATGACAGTGATGCTTTGGTATCGCAAGAAAAG
* *
1956188 CTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTC
66 CTTTTTTTCCACCG-TTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACATAAATACTC
* ** ** *
1956253 ATACTAATCTCCGT-TT-TTTTCGGGATTAGGCACCGTAAATGTAG-CGTTCT-A-TAAGGAGAT
130 ATAC-AAT-TCCCTATTCTTTTCAAGATTAGGCACCGTAAACATAGTC-TTCTCACT-AGGAGAC
* *
1956313 A-GATATTAATGCTTTCATTTCGCAAAAAAGGCT-TTCTTCCCA-CCAATTTTTGTAAAGTCAAA
191 ACGATATTAATGCTTTCATTTCGCAAAAAACGCTATT-TTCCCATCAAATTTTTGTAAAGTCAAA
** * * * *
1956375 ATTTGTGCCTCAAATAAGCCAAACATTGAATCA-AGTTTTGATCTTCTTTCAATTCGTGATTAGG
255 ATTCATGCCTCAAATAAGCCAAAC-GTGAAT-AGAGTTTTCAACTTCATTCAATTCGTGATTAGG
* * *
1956439 CACTATAAAAACATTCTCCTCAAT-AAGATTAATGATATTGATGATTTTCTTTCGCACAGAAATT
318 CACTATAAAAACATTCTCCTC-ATCAACATTAATAATATTGATGATTTTCTTTCGCACAGAAATC
* *
1956503 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTC
382 ATTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
1956568 ACAACAGTCTCCATTCTCTTCAACATTGGGATCAAAAAACACATTCCCTTCATTAGGATACATGA
447 ACAACAATCTCCACTCTCTTCAACATTGGGATCAAAAAACACATTCCATTCATTAGGATACATGA
* * * * * *
1956633 CTATGGTGCTTTGGAATCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTG
512 CAATGATGCTATGGAATAGCAAGAAAAGC-TTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * *
1956698 TCTCTTAAATCCGATAAACATGAAAACTCGTACTATT-CCCATTCTTTT-CAAGATTAGGCACTT
575 TCTCTTAAATCAGACAAACATGAAAACTCATACTATTCCCCATTATTTTCCAAGATTAGGCACTT
** * * *
1956761 TAAACATTGTCTTCTCATTGGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTT
640 TAAACAAAGTCTTCTCACTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * *
1956826 CCCA-CCAATTTTCGTAAGGTCAAAATTCATGCCTCAAATGAGCCAGACGTGGATACTAGTTTTG
705 CCCATCAAAATTT-GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTG
1956890 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAAAATTC
769 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAAAATTC
1956930 AATTCTTTAA
Statistics
Matches: 692, Mismatches: 103, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
823 5 0.01
824 416 0.60
825 53 0.08
826 136 0.20
827 74 0.11
828 4 0.01
829 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (825 bp):
GGATCCAAAAACACATTCTATTCATTACGACACATGACAGTGATGCTTTGGTATCGCAAGAAAAG
CTTTTTTTCCACCGTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACATAAATACTCA
TACAATTCCCTATTCTTTTCAAGATTAGGCACCGTAAACATAGTCTTCTCACTAGGAGACACGAT
ATTAATGCTTTCATTTCGCAAAAAACGCTATTTTCCCATCAAATTTTTGTAAAGTCAAAATTCAT
GCCTCAAATAAGCCAAACGTGAATAGAGTTTTCAACTTCATTCAATTCGTGATTAGGCACTATAA
AAACATTCTCCTCATCAACATTAATAATATTGATGATTTTCTTTCGCACAGAAATCATTTCTTTG
CCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATC
TCCACTCTCTTCAACATTGGGATCAAAAAACACATTCCATTCATTAGGATACATGACAATGATGC
TATGGAATAGCAAGAAAAGCTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATC
AGACAAACATGAAAACTCATACTATTCCCCATTATTTTCCAAGATTAGGCACTTTAAACAAAGTC
TTCTCACTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCATCAAAAT
TTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
TTTGTGATTAGGCACTATAAAAAAATTCTCCTCTTTTCAAGATTG
Found at i:1957011 original size:475 final size:475
Alignment explanation
Indices: 1956109--1962084 Score: 7682
Period size: 475 Copynumber: 12.6 Consensus size: 475
1956099 AACATTCTCC
* * * *
1956109 TCTTTTCAAGATTGGGATCCAAAAACACATTTTCTTCATTACGATACATGACAGTGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * * *
1956174 TGTCGTAAGAAATGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * ** ** **
1956239 AAACATAAATAGTCATACTAATCTCCGT-TT-TTTTCGGGATTAGGCACCGTAAATGTAG-CGTT
131 AAACATGAATACTTATACT-AT-TCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TT
* * * ** * * * *
1956301 CT-ATAAGGAGATA-GATATTAATGCTTTCATTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTT
193 CTCATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTT
* * * * * * * *
1956364 GTAAAGTCAAAATTTGTGCCTCAAATAAGCCAAACATTGA-ATCAAGTTTTGATCTTCTTTCAAT
258 GTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATA-CTAGTTTTGATCTTCATTCATT
* ** * *
1956428 TCGTGATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTGATGATTTTCTTTCG
322 TTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTG
* * *
1956493 CA-CAGAAATTTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAG
387 CATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* ** *
1956557 TATCGATTCTCACAACAGTCTCCAT
451 CATCGATTCTCGTAACAATCTCCAT
* ** * ** *
1956582 TCTCTTCAACATTGGGATCAAAAAACACATTCCCTTCATTAGGATACATGACTA-TGGTGCTTTG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-AGTGATGCTTTG
* * * * **
1956646 GAATCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATCCG
65 GTATCGCAAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * ** *
1956711 ATAAACATGAAAACTCGTACTATTCCC-ATTCTTTTCAAGATTAGGCACTTTAAACATTGTCTTC
129 ACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTC
* * * * *
1956775 TCATTGGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTCG
194 TCATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTTG
* *
1956840 TAAGGTCAAAATTCATGCCTCAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTCATTTT
259 TAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT
* *** *
1956905 GTGATTAGGCACTATAAAAAAATTCAATTCTTTAAGATTAACGATATTGATGATTTACTTTTGCA
324 GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA
* * * *
1956970 TGAAAATCTGTTCTTTGCCCTATTTTTCTTAAAACCAAAGTTCAGCCCTTAAATAAAGACAAGCA
389 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCA
*
1957035 TCGATTC-CTGTAACAACCTCCAT
453 TCGATTCTC-GTAACAATCTCCAT
* * * *
1957058 TCTTTCCATGATTGGGATCCAAAAACACATTTTATTCGTTAGGATACATGACAGTGATGTTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * *
1957123 TATCGCAAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCGTAAATAAGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
1957188 AAACATGAATACTTACACTATTCCCTATTCTTTTCAAGATTAGACACTTTAAACATAGTCTTCTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
* * * * * *
1957253 ATTGGGATACACGATATTGGTACTTTGGTTTCCCAAGAAAGGTTTTTTTCCCACTAATTTTTGTA
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTTGTA
* * * * *
1957318 AGGTCAAAATTCGTTCGTCAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTTATTTTAT
261 AGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGT
*
1957383 GATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG
326 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG
* * * *
1957448 AAAATCTTTTCTTTGCCCTTTTTTTCTTAAATTCAAAGTTCAACCCTTAAATAAGACAAGCATCG
391 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
1957513 ATTCTCGTAACAATCTCCAT
456 ATTCTCGTAACAATCTCCAT
* *
1957533 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAAACACGACAGTGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * * * * *
1957598 TATCACAAGAAAAGCTTTTTTTCTACTGTTTTCGATAAAATCAAAGCTTGTCTCTTAAATAAGGC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
1957663 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
* * * * * * * **
1957728 ATTGGGATACACGATATTGGTACTTTGGTTACCCAAGAAAGGTTTTTTTCCCACTAATTTTCATA
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTTGTA
* * * * * * *
1957793 AAGTCAAAATTCGTTCGTCAAATGAGCCAGATGTGGATACTAGTTTCGATCTTCATTCATTTTAT
261 AGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGT
*
1957858 GATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG
326 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG
* * * * *
1957923 AAAATCTTTTCTTTGCCCTTTTTTTCTTAAATTCAAAGTTCAACCCTTAAATAAGACAAGCATTG
391 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
1957988 ATTCTCGTAACAATCTCCAT
456 ATTCTCGTAACAATCTCCAT
**
1958008 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACACAACAGTGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * * *
1958073 TATCACAAGAAAAGCTTTTTTTCCACTGTTTTCGATAGAATCAAAGCTTGTCTCTTAAATAAGGC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
1958138 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
** * * * * * * *
1958203 CCTAAGATACACGATATTGGTACTTTCGTTTCGCAACAAATGCTGTTTTCTCAAGAAATTTTTGT
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTC-CCACAAATTTTTGT
* * *
1958268 ATGGTCAAAATTCATGCCACAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTG
260 AAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTG
* * *
1958333 TGATTAGGCACTATAAAAACATTCTCCTCTTCAAGATTACCGATATTGATGATTTCTTTTTTTTT
325 TGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGA----TTTTCTTTT
* * *
1958398 GCTTTG-AAATCTTTTCTTTGCCTTGTTTTCCTTAAAATCAAAGTT-AGTCCCTTAAATAAGACA
386 GC-ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAAATAAGACA
*
1958461 AGGATCGATTCTCGTAACAATCTCCAT
449 AGCATCGATTCTCGTAACAATCTCCAT
* * * * *
1958488 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCGTTAGGACACATGATACTGATGCTTCGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * *
1958553 TATCGCAAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * **
1958618 AAACAAGAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTGGAACATAGTCTTCTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
* * * * * *
1958683 ATTGGGATACACGATATTGGTGCTTTGGTTTCACAACAAA-GCTTTTTTTCCCACCAATTTTCGT
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGC-TTTTTTCCCACAAATTTTTGT
** *
1958747 AAGGTCAAAATTCGTGCCTCAAATGAGCCTGATGTGGATACTAGTTTTGATCTTCATTCATTTTG
260 AAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTG
* * *
1958812 TGATTAGGCACTATAAAAAAATTCTCTTCCTTAAGATTAACGATATTGATGATTTTCTTTTGCAT
325 TGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT
** * *
1958877 GAAAATCTTTTCTTTGCCCTATTTTTTTTAAAATCAAAGTTCAGCCCTTAAATAAGACAAGCTTC
390 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
*
1958942 GATTCTCATAACAATCTCCAT
455 GATTCTCGTAACAATCTCCAT
* *
1958963 TCTTTTCATGATTAGCATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* *
1959028 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGGC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
1959093 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTGAAACATAGTCTTTTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
* * * ** *
1959158 ACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGAAATGCGATTTTCCCAAGAAATTTTTGT
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACAAATTTTTGT
* * *
1959223 ACGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAATTTTGATCTTCATTCATTTTG
260 AAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTG
* * * *
1959288 TGGTTAGGTACTATAAAAACATTCTCCTCTTCAAGATT-ACTAATATTGATGATTTTCTTTTGCA
325 TGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA
* *
1959352 TTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAACCA
389 -TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* *
1959416 TCGATTCTCGTAATAATCTCCAC
453 TCGATTCTCGTAACAATCTCCAT
* * * * * *
1959439 TCTTTTCAAGATTGGGATCCCAAAACACGTTCTATTCTTTAGGATACATGACAATGATGCTATGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
** * * * **
1959504 GGTCGCAAGAAAAGCTTTTTTT-CACCGTTTTTTATAGAATCAAAGTTTGACTCTTAAATTGGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
1959568 AAACATGAATAGTTATACTATT-CCTCATTATTTTCAAGGTTAGGCACTTTAAACA-ACTCCTCT
131 AAACATGAATACTTATACTATTCCCT-ATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCT
* * * *
1959631 CACTAGGATACATGATATTAGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAA-TTTTG
195 CATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCA-CAAATTTTTG
* *
1959695 TAAGGTTAAAATTCGTGCCTCAAATGAGCCAAACGTGGATATTAGTTTTGATCTTCATTCATTTT
259 TAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT
* * * *
1959760 GTGATTAGGCATTATAAAAACATTCTCTTCTTTAAGATTAACGATATTGAT-TTTTTTTTTTGCA
324 GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA
* ** * * *
1959824 TGAAATTCTTTTCTTTGCCCTATTTTTTTTAAAATCAAAGTTCAGCTCTTAAATAAGACAAGCGT
389 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* *
1959889 TGATTCTTGTAACAATCTCCAT
454 CGATTCTCGTAACAATCTCCAT
* *
1959911 TCTTTTCATGATTGGCATCCAAAAACACATTCTATTCATTAAGATACATGACAGTGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* *
1959976 TATCGCAAG-AAAGCTTTTTTTCTACT-ATTTTGATTA-AATCAAAGTTTGTCTCTTAAATAAGA
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
1960038 CAAACATGAAAACTTAAACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCT
130 CAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCT
* * * * * *
1960103 CACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGCAACGCTGTTTTCCCAAGAAATTTTTG
195 CATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACAAATTTTTG
* * * * *
1960168 TATGGTCTAAATTCATGCCTTAAATGAGCCAAACGTGGATACTAG-TTTGTTCTTCATTCATTTT
259 TAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT
* *
1960232 GTGATTAGGCACTATAAAAACATTCTCCTCTTCAAGATT-ACTGATATTGGTGATTTTCTTTTGC
324 GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGC
* * *
1960296 TTTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATGAATGTTCATCCCTTAAATAAGACAAGC
388 -ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
1960360 ATCAATTCTCGTAACAATCTCCGT
452 ATCGATTCTCGTAACAATCTCCAT
* * * *
1960384 TCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATAAATGACAATGATGCTATGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * * * *
1960449 TGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAATTTTGTCTCCTAAATTAGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
1960514 AAACATTAATACGTATACTATTCCCCATTCTTTTCAAGATTAGGTACTTTAAACAAAGT-TTCTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
** * * *
1960578 GCTAGGATACATGATATTGGTGCTTTCGTTTTGCAAGAAAGGCTTTTTTCCCATGAAA-TTTTGT
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCA-CAAATTTTTGT
* * * * *
1960642 AAGGTCAAAATTCGTACCTCAAATGAGCCAAACATGGATACTACTTTTGATCTTCTTTCACTTTG
260 AAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTG
* * *
1960707 TGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTAGCAT
325 TGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT
* *
1960772 -AGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCAT
390 GA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* **
1960836 TGATTCTCACAACAATCTCCAT
454 CGATTCTCGTAACAATCTCCAT
** *
1960858 TCTTTTCATGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACTA-TGGTGCTTTG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-AGTGATGCTTTG
* * * *
1960922 GTGTCGCAAGAAACA-CTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTCTCTTAAATCA
65 GTATCGCAAGAAA-AGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *** * * * * *
1960986 GACAAACAAGAAAACTCGCACTATTCCCCATTGTTTTCAAGATTAGGTACTTTAAACAAACTCTT
128 GACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTT
* * ** *
1961051 CTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAATGG-TTTTTTTACACCAATTTTT
193 CTCATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTT
* * *
1961115 GTAAGGTCAAAATTCGTGCCTTAAATGAGCCAGATGTGGATACTAGTTTTGATCTTCATTCATTT
258 GTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTT
* * *
1961180 TGTGATTAGGCACTATAAAAACGTCCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGC
323 TGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC
* *
1961245 A-AAGAAATCTTTTCTTTGCCCTTTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
388 ATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
1961309 ATCAATTCTCATAACAATCTCCAT
452 ATCGATTCTCGTAACAATCTCCAT
* * * * * *
1961333 TCTTTCCATGATTGGGATCCAAAAATACATTCTATTCATTAAGATACGTGATAGGGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * * *
1961398 TATCGTAAG-AAAGTTTTTTTTCCACTGTTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
1961462 AAACATGAAAACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAATCTTCTC
131 AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
* * * * *
1961527 ACTAGGATACACGATATTGGTGCTTTCGTTTCGTAAGAAATGCTGTTTTCCCA-AGAAATTTTGT
196 ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACA-AATTTTTGT
* * * * *
1961591 ATGGTCTAAATTCATGCCTTAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTCATTTTG
260 AAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTG
* ** *
1961656 TGATTAGGCACTGTAAAAATGTTCTCCTCTTTAAGATGAATC-ATATTGATGATTTTCTTTTGCT
325 TGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAA-CGATATTGATGATTTTCTTTTGC-
* *** *
1961720 TTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTGTTTAAATAAAACAAGCA
388 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
*
1961784 TCGATTCTCGTAGCAATCTCCA-
453 TCGATTCTCGTAACAATCTCCAT
* * * * *
1961806 T-TTTTCAAGAATGGGATCAAAAAACACATTTTATTCATTAGGATACACGACAGTGATGCTTTGG
1 TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
* * * ** * * *
1961870 TGTCGTAAGAAAATCTTTTTTTCTGCTGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGAC
66 TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * * ** ** *
1961935 AAACATGAATAGTCATACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTAGTTTTCT
131 AAACATGAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCT
* * ** * * * * *
1961999 -GTAAGGATACA-GATATTAATGCTTTTGTTTCACAAGAAAGGCTTTCTTCCTACTAATTTTTGT
195 CATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTTGT
* *
1962062 GAA-GTCAAAATTCATTCCTCAAA
260 -AAGGTCAAAATTCGTGCCTCAAA
1962085 ATTCATTCCT
Statistics
Matches: 4848, Mismatches: 589, Indels: 134
0.87 0.11 0.02
Matches are distributed among these distances:
471 148 0.03
472 347 0.07
473 679 0.14
474 645 0.13
475 1808 0.37
476 795 0.16
477 2 0.00
479 119 0.02
480 303 0.06
481 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGG
TATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC
ATTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTTTTGTA
AGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGT
GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG
AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
ATTCTCGTAACAATCTCCAT
Found at i:1959147 original size:158 final size:158
Alignment explanation
Indices: 1956604--1961575 Score: 890
Period size: 158 Copynumber: 31.4 Consensus size: 158
1956594 TGGGATCAAA
** * * ** *
1956604 AAACACATTCCCTTCATTAGGATACATGACTA-TGGTGCTTTGGAATCGCAAGAAATGCTTTTCT
1 AAACACATTCTATTCATTAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-T
** * * ** * * **
1956668 TT-CCACCGTTTTTGATAGAATTAAAG-TTTGTCTCTTAAATCCGATAAACATGAAAACTCGTAC
64 TTGCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATAC
*
1956731 TATTCCC-ATTCTTTTCAAGATTAGGCACTTT
128 TATTCCCTATTCTTTTCATGATTAGGCAC-TT
* * * *
1956762 AAACA-TTGTCT-TCTCATTGGGATACACGATATTGGTGCTTTGGTTTCGCAAG-AAAGGTTTTT
1 AAACACAT-TCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
* * * * * * * * * * * *
1956824 TTCCCACCAATTTTCG-TAAGGTCAAA-ATTCATGC-CTCAAATGAGCCAGACGTGGATAC-TAG
64 TTGCCA-CTATTTTTGATAA-ATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA-
** * *
1956885 TTTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTAT
125 TACT-ATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* * * * * * ** * * * *
1956920 AAAAAAATTCAATTCTTTAAGATTA-ACGATATTGATGATTTACTTTTGCATGAAAATCTGTTCT
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCT-TTTT
** * * * * *
1956984 TTGCC-CTATTTTTCTTAAAACCAAAG-TTCAG-CCCTTAAATAAAGACAAGCATCGATTCCTGT
64 TTGCCACTATTTTTGAT-AAATCAAAGCTTC-GTCTCTTAAAT-AAGACAAACAT-GAATACT-T
* * * * **
1957046 A-AC-A-ACCTCCATTCTTTCCATGATT-GGGATCCAA
124 ATACTATTCC-CTATTCTTTTCATGATTAGGCA--CTT
* * * * * * *
1957080 AAACACATTTTATTCGTTAGGATACATGACAGTGATGTTTTGGTATCGCAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* *
1957145 -CCACTATTTTTGATAGAATCAAAGCTT-GTCTCGTAAATAAGACAAACATGAATACTTACACTA
66 GCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
* *
1957208 TTCCCTATTCTTTTCAAGATTAGACACTTT
130 TTCCCTATTCTTTTCATGATTAGGCAC-TT
* * * * * * *
1957238 AAACATAGTCT-TCTCATTGGGATACACGATATTGGTACTTTGGTTTCCCAAG-AAAGGTTTTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
* * * * * * * * *
1957301 TCCCACTAATTTTTG-TAAGGTCAAA-ATTCGT-TCGTCAAATGAGCCAGACGTGGATAC-TAGT
65 TGCCACT-ATTTTTGATAA-ATCAAAGCTTCGTCTC-TTAAATAAGACAAACATGAATACTTA-T
** * * *
1957362 TTTGATCTTCAT-TTATTTT-ATGATTAGGCACTAT
126 ACT-AT-TCCCTATTCTTTTCATGATTAGGCACT-T
* * * * * ** * * *
1957396 AAAAACATTCTCTTCTTTAAGATTA-ACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-T
* ** ** * * *
1957460 TTGCC-CTTTTTTTCTTAAATTCAAAG-TTCAACCCTTAAATAAGACAAGCATCG-ATTCTCGTA
64 TTGCCACTATTTTTGATAAA-TCAAAGCTTCGTCTCTTAAATAAGACAAACAT-GAATACT--TA
* * **
1957522 -AC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAA
125 TACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * * *
1957555 AAACACATTCTATTCATTAGGAAACACGACAGTGATGCTTTGGTATCACAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* * * *
1957620 -CTACTGTTTTCGATAAAATCAAAGCTT-GTCTCTTAAATAAGGCAAACATGAATACTTATACTA
66 GCCACTATTTTTGAT-AAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
*
1957683 TTCCCTATTCTTTTCAAGATTAGGCACTTT
130 TTCCCTATTCTTTTCATGATTAGGCAC-TT
* * * * * * * *
1957713 AAACATAGTCT-TCTCATTGGGATACACGATATTGGTACTTTGGTTACCCAAG-AAAGGTTTTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
* * * * * * * * ** *
1957776 TCCCACTAATTTTCATAAAGTCAAA-ATTCGT-TCGTCAAATGAGCCAGATGTGGATAC-TAGTT
65 TGCCACTATTTTTGATAAA-TCAAAGCTTCGTCTC-TTAAATAAGACAAACATGAATACTTA--T
* * *
1957838 TCGA-T-CTTCATTCATTTT-ATGATTAGGCACTAT
126 ACTATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* * * * * ** * * *
1957871 AAAAACATTCTCTTCTTTAAGATTA-ACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-T
* ** ** * * *
1957935 TTGCC-CTTTTTTTCTTAAATTCAAAG-TTCAACCCTTAAATAAGACAAGCATTG-ATTCTCGTA
64 TTGCCACTATTTTTGATAAA-TCAAAGCTTCGTCTCTTAAATAAGACAAACA-TGAATACT--TA
* * **
1957997 -AC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAA
125 TACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * * *
1958030 AAACACATTCTATTCATTAGGATACACAACAGTGATGCTTTGGTATCACAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* * *
1958095 -CCACTGTTTTCGATAGAATCAAAGCTT-GTCTCTTAAATAAGGCAAACATGAATACTTATACTA
66 GCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
*
1958158 TTCCCTATTCTTTTCAAGATTAGGCACTTT
130 TTCCCTATTCTTTTCATGATTAGGCAC-TT
* * ** * * * * * *
1958188 AAACATAGTCT-TCTCCCTAAGATACACGATATTGGTACTTTCGTTTCGCAACAAATGCTGTTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCT-TTTT
* * ** ** * * ** * * * *
1958252 CT-CAAGAAATTTTTG-TATGGTCAAA-ATTCATGC-CACAAATGAGCCAAACGTGGATAC-TAG
64 TTGCCA-CTATTTTTGATA-AATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA-
** * *
1958312 TTTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTAT
125 TACT-ATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* ** * ** * ** *
1958347 AAAAACATTCTCCTC-TTCAAGATTAC-CGATATTGATGATTTCTTTTTTTTTGCTTTG-AAATC
1 AAACACATTCTATTCATT-AGGA-TACACGATATTGATG----CTTTGGTTTCGC-AAGAAAAGC
* * * * * **
1958409 TTTTCTTTGCC-TTGTTTTCCTTA-AAATCAAAG-TTAGTCCCTTAAATAAGACAAGGATCG-AT
59 TTTT-TTTGCCACTATTTT--TGATAAATCAAAGCTTCGTCTCTTAAATAAGACAAACAT-GAAT
* * * **
1958470 TCTCGTA-AC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAA
120 ACT--TATACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * * * *
1958510 AAACACATTCTATTCGTTAGGACACATGATACTGATGCTTCGGTATCGCAAGAAAAGC-TTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* * *
1958574 CCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAAGAATACTTACACTA
66 GCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
*
1958638 TTCCCTATTCTTTTCAAGATTAGGCACTT
130 TTCCCTATTCTTTTCATGATTAGGCACTT
* * * * * * *
1958667 GGAACATAGTCT-TCTCATTGGGATACACGATATTGGTGCTTTGGTTTCACAA-CAAAGCTTTTT
1 -AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
* * * * * * * * ** ** *
1958730 TTCCCACCAATTTTCG-TAAGGTCAAA-ATTCGTGC-CTCAAATGAGCCTGATGTGGATAC-TAG
64 TTGCCA-CTATTTTTGATAA-ATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA-
** * *
1958791 TTTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTAT
125 TACT-ATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* * * * * * ** * * *
1958826 AAAAAAATTCTCTTCCTTAAGATTA-ACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-T
** * * * * *
1958890 TTGCC-CTATTTTTTTTAAAATCAAAG-TTCAG-CCCTTAAATAAGACAAGCTTCG-ATTCTCAT
64 TTGCCACTATTTTTGAT-AAATCAAAGCTTC-GTCTCTTAAATAAGACAAACAT-GAATACTTAT
* **
1958951 AAC-AATCTCC-ATTCTTTTCATGATTA-GCATCCAA
126 -ACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * *
1958985 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* *
1959050 -CCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGGCAAACATGAATACTTATACTA
66 GCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
*
1959113 TTCCCTATTCTTTTCAAGATTAGGCACTT
130 TTCCCTATTCTTTTCATGATTAGGCACTT
* * * * * * * * **
1959142 GAAACATAGTCTTTTCACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGAAATGC-GATTT
1 -AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
* ** ** * * * * * * * *
1959206 TCCCAAGAAATTTTTG-TACGGTCAAA-ATTCATGC-CTCAAATGAGCCAAACGTGGATACTAAT
65 TGCC-A-CTATTTTTGATA-AATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTAT
** * * * *
1959268 TTTGA-T-CTTCATTCATTTT-GTGGTTAGGTACTAT
126 ACT-ATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* ** * * ** * * *
1959302 AAAAACATTCTCCTC-TTCAAGATTACTA--ATATTGATGATTTTCTTTTGCATTG-AAATCTTT
1 AAACACATTCTATTCATT-AGGA-TAC-ACGATATTGATGCTTTGGTTTCGCA-AGAAAAGCTTT
* ** * * *
1959363 TCTTTGCC-CTATTTTCCTTA-AAATCAAAG-TTTATCCCTTAAATAAGACAACCATCG-ATTCT
62 T-TTTGCCACTATTTT--TGATAAATCAAAGCTTCGTCTCTTAAATAAGACAAACAT-GAATACT
** * * * * * **
1959424 CGTAATAATCTCC-ACTCTTTTCAAGATT-GGGATCCCA
123 TATACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * * * * **
1959461 AAACACGTTCTATTCTTTAGGATACATGACAATGATGCTATGGGGTCGCAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
** * * * ** *
1959526 --CACCGTTTTTTATAGAATCAAAG-TTTGACTCTTAAATTGGACAAACATGAATAGTTATACTA
66 GCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
* * *
1959588 TT-CCTCATTATTTTCAAGGTTAGGCACTTT
130 TTCCCT-ATTCTTTTCATGATTAGGCAC-TT
* * * * * *
1959618 AAACA-ACTCCT-CTCACTAGGATACATGATATT-AGTGCTTTCGTTTCGCAAGAAAGGC-TTTT
1 AAACACA-TTCTATTCATTAGGATACACGATATTGA-TGCTTTGGTTTCGCAAGAAAAGCTTTTT
* * * * * * * * * *
1959679 TTCCCA-TGAAATTTTG-TAAGGTTAAA-ATTCGTGC-CTCAAATGAGCCAAACGTGGATA-TTA
64 TTGCCACT--ATTTTTGATAA-ATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA
** * * *
1959739 GTTTTGA-T-CTTCATTCATTTT-GTGATTAGGCATTAT
125 -TACT-ATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* * * * * ** * * **
1959775 AAAAACATTCTCTTCTTTAAGATTA-ACGATATTGAT-TTTTTTTTTTGCATGAAATTCTTTTCT
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-T
** * * * *
1959838 TTGCC-CTATTTTTTTTAAAATCAAAG-TTCAG-CTCTTAAATAAGACAAGCGTTG-ATTCTTGT
64 TTGCCACTATTTTTGAT-AAATCAAAGCTTC-GTCTCTTAAATAAGACAAAC-ATGAATACTTAT
* **
1959899 AAC-AATCTCC-ATTCTTTTCATGATT-GGCATCCAA
126 -ACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * * *
1959933 AAACACATTCTATTCATTAAGATACATGACAGTGATGCTTTGGTATCGCAAG-AAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* * * *
1959997 -CTACTA-TTTTGATTAAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAAAACTTAAACTA
66 GCCACTATTTTTGA-TAAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
*
1960059 TTCCCTATTCTTTTCAAGATTAGGCACTTT
130 TTCCCTATTCTTTTCATGATTAGGCAC-TT
* * * * * * * * *
1960089 AAACATAGTCT-TCTCACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGCAACGC-TGTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
* ** ** * * * * *
1960152 TCCCAAGAAATTTTTG-TATGGTCTAAA--TTCATGC-CTTAAATGAGCCAAACGTGGATAC-TA
65 TGCC-A-CTATTTTTGATA-AATC-AAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA
* * * *
1960212 GT-TTGTT-CTTCATTCATTTT-GTGATTAGGCACTAT
125 -TACTATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* ** * * * * ** * ** *
1960247 AAAAACATTCTCCTC-TTCAAGATTAC-TGATATTGGTGATTTTCTTTTGCTTTG-AAATCTTTT
1 AAACACATTCTATTCATT-AGGA-TACACGATATTGATGCTTTGGTTTCGC-AAGAAAAGCTTTT
* * * * * * * *
1960309 CTTTGCC-CTATTTTCCTTA-AAATGAATG-TTCATCCCTTAAATAAGACAAGCATCAATTCTCG
63 -TTTGCCACTATTTT--TGATAAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACT--
* * * * **
1960371 TA-AC-AATCTCC-GTTCTTTTCAAGATT-GGGATCCAA
123 TATACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * * * * *
1960406 AAACACATTCTATTCATTAGGATAAATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
** * * * * * *
1960471 -CCACCGTTTTTGATAGAATCAAA-TTTTGTCTCCTAAATTAGACAAACATTAATACGTATACTA
66 GCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
* * *
1960534 TTCCCCATTCTTTTCAAGATTAGGTACTTT
130 TTCCCTATTCTTTTCATGATTAGGCAC-TT
* * ** * * * * *
1960564 AAACAAAGTT-T-CTCGCTAGGATACATGATATTGGTGCTTTCGTTTTGCAAGAAAGGC-TTTTT
1 AAACACA-TTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
* * * * * * *
1960626 TCCCA-TGAAATTTTG-TAAGGTCAAA-ATTCGTAC-CTCAAATGAGCCAAACATGGATACTACT
65 TGCCACT--ATTTTTGATAA-ATCAAAGCTTCGT-CTCTTAAATAAGACAAACAT-GA-A-TACT
* * * *
1960687 TTTGA-TCTT--CT-TTCACTTT-GTGATTAGGCACTAT
123 TAT-ACTATTCCCTATTC-TTTTCATGATTAGGCACT-T
* ** * * * ** * *
1960721 AAAAACATTCTCCTCATTAAGATTA-ATGATATTGATGATTTTCTTTAGCATAG-AAATCTTTTC
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCA-AGAAAAGCTTTT-
* * * * * * * *
1960784 TTTGCC-CTATTTTCCTTA-AAATCAAAG-TTCATCCCCTAAATAAGGCAAGCATTG-ATTCTCA
63 TTTGCCACTATTTT--TGATAAATCAAAGCTTCGTCTCTTAAATAAGACAAACA-TGAATACTTA
* * * **
1960845 CAAC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAA
125 -TACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
** * * *
1960880 AAACACATTCCCTTCATTAGGATACATGACTA-TGGTGCTTTGGTGTCGCAAGAAACA-CTTTTC
1 AAACACATTCTATTCATTAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAA-AGCTTTT-
** * * * * * ***
1960943 TTT-CCACCGTTTTAGATAGAATCAAAG-TTTGTCTCTTAAATCAGACAAACAAGAAAACTCGCA
63 TTTGCCACTATTTTTGATA-AATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATA
* * * *
1961006 CTATTCCCCATTGTTTTCAAGATTAGGTACTTT
127 CTATTCCCTATTCTTTTCATGATTAGGCAC-TT
* * * * *
1961039 AAACAAACTCT-TCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAG-AATGGTTTTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
* * * * * * * ** *
1961102 T-ACACCAATTTTTG-TAAGGTCAAA-ATTCGTGC-CTTAAATGAGCCAGATGTGGATAC-TAGT
65 TGCCA-CTATTTTTGATAA-ATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA-T
** * *
1961162 TTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTAT
126 ACT-ATTCCCT-ATTC-TTTTCATGATTAGGCACT-T
* * * ** * * * * ** * *
1961196 AAAAACGTCCTCCTCTTTAAGATTA-ATGATATTGATGATTTTCTTTTGCAA-AGAAATCTTTTC
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTTTCGCAAGA-AAAGCTTTT-
** * * * * * *
1961259 TTTGCC-CT-TTTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCAATTCTCAT
63 TTTGCCACTATTTTT-GAT-AAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTAT
* * * **
1961321 AAC-AATCTCC-ATTCTTTCCATGATT-GGGATCCAA
126 -ACTATTC-CCTATTCTTTTCATGATTAGGCA--CTT
* * ** ** * *
1961355 AAATACATTCTATTCATTAAGATACGTGATAGGGATGCTTTGGTATCGTAAG-AAAG-TTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
* * ** *
1961418 TCCACTGTTTTTGATAAAATCAAAG-TTTATCTCTTAAATAAGACAAACATGAAAACTTATACTA
66 GCCACTATTTTTGAT-AAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
*
1961482 TTCCCTATTCTTTTCAAGATTAGGCACTTT
130 TTCCCTATTCTTTTCATGATTAGGCAC-TT
* * * * * * * *
1961512 AAACATAATCT-TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGTAAGAAATGCTGTTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
1961576 CCCAAGAAAT
Statistics
Matches: 3360, Mismatches: 1035, Indels: 837
0.64 0.20 0.16
Matches are distributed among these distances:
155 21 0.01
156 189 0.06
157 599 0.18
158 1242 0.37
159 1002 0.30
160 184 0.05
161 18 0.01
162 22 0.01
163 73 0.02
164 7 0.00
165 1 0.00
166 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTT
GCCACTATTTTTGATAAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTAT
TCCCTATTCTTTTCATGATTAGGCACTT
Found at i:1962085 original size:14 final size:14
Alignment explanation
Indices: 1962066--1962094 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1962056 TTTTGTGAAG
1962066 TCAAAATTCATTCC
1 TCAAAATTCATTCC
1962080 TCAAAATTCATTCC
1 TCAAAATTCATTCC
1962094 T
1 T
1962095 ACTATTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (14 bp):
TCAAAATTCATTCC
Found at i:1962990 original size:473 final size:473
Alignment explanation
Indices: 1962096--1964589 Score: 3057
Period size: 473 Copynumber: 5.3 Consensus size: 473
1962086 TTCATTCCTA
* * *
1962096 CTATTCATTAGGATACATGATAATGATGCTATGCTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* *
1962161 TTGATAGAATCAAAGTTTGTGTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTCT
* * *
1962226 TTTCAAGATTAGGAACTTTAAACAAAGTCTTCTCACTAGGGTACACGATATTGGTACTTTCGTTT
131 TTTCAAGATTAGGAACTTTAAACATAGTCTTCT-A-TAGGATACACGATATTGGTGCTTTCGTTT
* *** * * *
1962291 CACAAGAAAGGCTTTTTTCCCGTGAAATTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAA
194 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAA
* *
1962356 TGTGGATACCAGTTTTGATCTTCATTCA-TTATGTGATTAGGCACTATAAAAACATTCTCCTC-T
259 CGTGGATACTAGTTTTGATCTTCATTCACTT-TGTGATTAGGCACTATAAAAACATTCTCCTCAT
* * *
1962419 CTAAGATTAACGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
323 -TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* ** *
1962484 AAATCAAAGTTCGTCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
387 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAA
*
1962549 GATTAGGATCCAAAAACACATT
452 GATTGGGATCCAAAAACACATT
* * * ** **
1962571 TTATTCTTTAGGATATATGACAATGATGCTTTGGTGTCGTGAGAAAAGCTTTTTTTCCATTGTTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* * * ** * * * *
1962636 TTGATAGAATCAAAGTTTATCTCTTAGATAAGACAAACACCAATAGTCATACTAATCTCCATTTT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTCT
* * ** ** * **
1962701 TTTCGAGATTAGGCACCATAAATGTAGCCTTCTATAAGGATACA-GATATTAATGCTTTCGTTTC
131 TTTCAAGATTAGGAACTTTAAACATAGTCTTCTAT-AGGATACACGATATTGGTGCTTTCGTTTC
* * * *
1962765 ACAATAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCAAAATTCGTGCCTCAAA-GAAGCCAAA
195 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATG-AGCCAAA
* * ** *
1962829 CATGGACT-CAAGTTTTGATCTTTTTTCACTTTGTAATTAGGCACTATAAAAACATTCTCCTCAT
259 CGTGGA-TACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT
* *
1962893 TAAGATTAATGATATTGATGATTTTCTTTCACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAA
323 TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* *
1962958 AATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCACAACAATCTCCATTCTTTTCAAG
388 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAG
* *
1963023 TTTGGGATCCAAAAACATATT
453 ATTGGGATCCAAAAACACATT
** * * * * * *
1963044 CCCTTCATTAGGGTACATGACTATGGTGTTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCGTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTT
* ** * * *
1963109 TTGGATAGAATCAAAGTTCATCTCTTAAATTAGACAAAAATGAAAACTCGTACTATTCCCCATTC
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTC
* * * * *
1963174 TTTTCAAGATTAGGGACTTTAAACATAGTCTTCCCATTAGGGTACACGATATTGGTGCGTTGGTT
130 TTTTCAAGATTAGGAACTTTAAACATAGTCTT-CTA-TAGGATACACGATATTGGTGCTTTCGTT
* * * * * *
1963239 TCGCAAGAAAGGATTTTTTCCCACCAATTTTCGTAAAGTCAAAATCCATGCCTCAAATGAGCTAG
193 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
1963304 ACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGTACTATAAAAACATTCTCTTCTT
258 ACGTGGATACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT
* * * * * * *
1963369 TAAGATTAACGATACTGACGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAA
323 TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * * *
1963434 AATCAAAGTTCAGCCCTTAAAAAAGACAAGCGTTGATTCTCGCAACAATCTACATTCTTTTCATG
388 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAG
1963499 ATTGGGATCCAAAAACACATT
453 ATTGGGATCCAAAAACACATT
* * * * * * *
1963520 CTATTAATTAGGATACATGACAGTGATGCTTCGGTGCCGTAGGAAAAGCTTGTTTTCCACCG-TT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* * * *
1963584 TTGATCA-AATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTTATCCTATTCCCTATTA
66 TTGAT-AGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTC
* * * * * *
1963648 TTTTCAAGATTACGCACTTTAAACAAAGTCTTTTCACTAGGATATACGATATTGGTGCTTTCATT
130 TTTTCAAGATTAGGAACTTTAAACATAGTCTTCT-A-TAGGATACACGATATTGGTGCTTTCGTT
* *** ** * *
1963713 TTGCAAGAAAGGCTTTTTTAATATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGCGCCA
193 TCGCAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
1963778 AACGTGGATACTAGTTTTGATCTTCTTTCATTTTGGGATTAGGCACTATAAAAACATTCTCCTCA
257 AACGTGGATACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCA
* *
1963843 TTAAGATTAATGATATTGGTGATTTTCTTTCGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTA
322 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
1963908 AAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAA
387 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAA
1963973 GATTGGGATCCAAAAACACATT
452 GATTGGGATCCAAAAACACATT
* * * * **
1963995 CTATTCATTAGGATACATTACGATGATGCTTTGATGTCGCAAGAAAAGCTTTTTTCCCTTCGTTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* * * * * * *
1964060 GTGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATTCTAATT-TCCATTT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACT-ATTCCCCATTC
** * ** ** * **
1964124 TTTTCTGGATCAGGAACCATAAATGTAGACTTCTATAAGGATACA-GATATTAATGC-TTCTGTT
130 TTTTCAAGATTAGGAACTTTAAACATAGTCTTCTAT-AGGATACACGATATTGGTGCTTTC-GTT
* * * * *
1964187 TCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTGAAGTCAAAATCCGTGCCTCAAATAAGCCAA
193 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* *
1964252 ACGTGGA-ATCTAGTTTTGATCTTCATTCACTTTGTCATTAGGCACTGTAAAAACATTCTCCTCA
258 ACGTGGATA-CTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCA
1964316 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
322 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
1964381 AAATCAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAA
387 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAA
1964446 GATTGGGATCCAAAAACACATT
452 GATTGGGATCCAAAAACACATT
** * * * * *
1964468 CCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCGTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTT
* * * * *
1964533 TTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTACTATT
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATT
1964590 GATGATTTTC
Statistics
Matches: 1704, Mismatches: 294, Indels: 44
0.83 0.14 0.02
Matches are distributed among these distances:
472 2 0.00
473 580 0.34
474 312 0.18
475 441 0.26
476 365 0.21
477 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTCT
TTTCAAGATTAGGAACTTTAAACATAGTCTTCTATAGGATACACGATATTGGTGCTTTCGTTTCG
CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACG
TGGATACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAA
GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATT
GGGATCCAAAAACACATT
Found at i:1964792 original size:257 final size:257
Alignment explanation
Indices: 1964329--1964807 Score: 681
Period size: 257 Copynumber: 1.9 Consensus size: 257
1964319 AGATTAATGA
**
1964329 TATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
1 TATTGATGATTTTCTTTCGCATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
* * *
1964394 TCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCACTATTTTCAAGATTGGGATCCAA
* * * * * *
1964459 AAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAATGCATTTCTT
131 AAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCGCAAGAAAAGCATTTCTT
1964524 TCCACCGTTTTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTAC
196 TCCACCGTTTTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTAC
* * * **
1964586 TATTGATGATTTTCTTTTGCTTCAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTTA
1 TATTGATGATTTTCTTTCGCATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
* *** *
1964651 TCCCTTAAATAAGACATGCATCGATTCTCGTGACAATCTCCACTCTTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCACTATTTTCAAGATTGGGATCCAA
* * * *
1964716 AACCACATTCTATTAATTAGGATACATGAC-AGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTT
131 AAACACATTCCATTAATTAGGATACATGACTA-TGATGCTTTGGTATCGCAAGAAAAGCATTTCT
* * * *
1964780 TTCTATCGTTTTTTATAGAATCACAGTT
195 TTCCACCGTTTTTGATAGAATCAAAGTT
1964808 TGTCTCTCAA
Statistics
Matches: 192, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
256 1 0.01
257 191 0.99
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (257 bp):
TATTGATGATTTTCTTTCGCATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
TCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCACTATTTTCAAGATTGGGATCCAA
AAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCGCAAGAAAAGCATTTCTT
TCCACCGTTTTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTAC
Found at i:1966254 original size:158 final size:160
Alignment explanation
Indices: 1965616--1966304 Score: 441
Period size: 158 Copynumber: 4.3 Consensus size: 160
1965606 TGGGATCCAA
* * * * *
1965616 AAACACATTCTATTCGTTAGGACACATGATACTGATGCTTCGGTATCGCAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTT
* *
1965681 CCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAAGAATACTTACACTA
66 CCCACTATTTTTGATAGAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
1965745 TTCCCTATTCTTTTCAAGATTAGGCACTTG
131 TTCCCTATTCTTTTCAAGATTAGGCACTTG
* * * * * * * *
1965775 GAACATAGTCT-TCTCATTGGGATACACGATATTGGTGCTTTGGTTTCACAA-CAAAGCTTTTTT
1 AAACACATTCTAT-TCATTAGGATACACGATATTGATGCTTTGGTATCGCAAGAAAAGCTTTTTT
* * * * * * * ** ** *
1965838 TCCCACCAATTTTCG-TA-AGGTCAAA-ATTCGTGC-CTCAAATGAGCCTGATGTGGATAC-TAG
65 TCCCA-CTATTTTTGATAGA-ATCAAAGCTTCGT-CTCTTAAATAAGACAAACATGAATACTTA-
** * **
1965898 TTTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTAT-
126 TACT-ATTCCCT-ATTC-TTTTCAAGATTAGGCACT-TG
* * * * * * ** * * * *
1965933 AAAAAAATTCTCTTCCTTAAGATTA-ACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
1 AAACACATTCTATTCATTAGGA-TACACGATATTGATGCTTTGGTATCGCAAGAAAAGCTTTT-T
* ** * * * * * *
1965997 TTGCC-CTATTTTTTTTAAAATCAAAG-TTCAG-CCCTTAAATAAGACAAGCTTCG-ATTCTCAT
64 TTCCCACTATTTTTGATAGAATCAAAGCTTC-GTCTCTTAAATAAGACAAACAT-GAATACTTAT
* * ***
1966058 AAC-AATCTCC-ATTCTTTTCATGATTA-GCATCCAA
127 -ACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTG
* * *
1966092 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTT
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTT
* *
1966157 -CCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGGCAAACATGAATACTTATACTA
66 CCCACTATTTTTGATAGAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
1966220 TTCCCTATTCTTTTCAAGATTAGGCACTTG
131 TTCCCTATTCTTTTCAAGATTAGGCACTTG
* * * * * * * *
1966250 AAACATAGTCTTTTCACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGAAA
1 AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTATCGCAAGAAA
1966305 TGCGATTTTC
Statistics
Matches: 384, Mismatches: 110, Indels: 73
0.68 0.19 0.13
Matches are distributed among these distances:
157 15 0.04
158 212 0.55
159 147 0.38
160 9 0.02
161 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (160 bp):
AAACACATTCTATTCATTAGGATACACGATATTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTT
CCCACTATTTTTGATAGAATCAAAGCTTCGTCTCTTAAATAAGACAAACATGAATACTTATACTA
TTCCCTATTCTTTTCAAGATTAGGCACTTG
Found at i:1967890 original size:474 final size:474
Alignment explanation
Indices: 1965173--1969190 Score: 5246
Period size: 474 Copynumber: 8.5 Consensus size: 474
1965163 CACAAGAAAA
* * *
1965173 GCTTTGGTATCACAAGAAAAGCTTTTTTTCCACTGTTTTCGATAGAATCAAAGCTTGTCTCTTAA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
1965238 ATAAGGCAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAG
66 ATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAG
* * * * * * *
1965303 TCTTCTCCCTAAGATACACGATATTGGTACTTTCGTTTCGCAACAAATGCTGTTTTCTCAAGAAA
131 TCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAA
* *
1965368 TTTTTGTATGGTCAAAATTCATGCCACAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATT
196 -TTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATT
**
1965433 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTCAAGATTACCGATATTGATGATTTCTT
260 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT-AAGATTAATGATATTGATGA--T-TT
* * * *
1965498 TTTTTTGCTTTGAAATCTTTTCTTTGCCTTGTTTTCCTTAAAATCAAAGTT-AGTCCCTTAAATA
321 TCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAAATA
*
1965562 AGACAAGGATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCT
385 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCT
* * * *
1965627 ATTCGTTAGGACACATGATACTGAT
450 ATTCATTAGGATACATGACAGTGAT
* * *
1965652 GCTTCGGTATCGCAAGAAAAGCTTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTT-CCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * ** *
1965717 AATAAGACAAACAAGAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTGGAACATA
65 AATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAA
* * * * * **
1965782 GTCTTCTCATTGGGATACACGATATTGGTGCTTTGGTTTCACAACAAA-GCTTTTTTTCCC-ACC
130 GTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGC-TTTTTTCCCAAGA
* ** *
1965845 AATTTTCGTAAGGTCAAAATTCGTGCCTCAAATGAGCCTGATGTGGATACTAGTTTTGATCTTCA
194 AATTTT-GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCA
* * *
1965910 TTCATTTTGTGATTAGGCACTATAAAAAAATTCTCTTCCTTAAGATTAACGATATTGATGATTTT
258 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCT-CTTAAGATTAATGATATTGATGATTTT
** *
1965975 CTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTTTTAAAATCAAAGTTCAGCCCTTAAATAA
322 CTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
1966039 GACAAGCTTCGATTCTCATAACAATCTCCATTCTTTTCATGATTAGCATCCAAAAACACATTCTA
386 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTA
1966104 TTCATTAGGATACATGACAGTGAT
451 TTCATTAGGATACATGACAGTGAT
*
1966128 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
1966193 ATAAGGCAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTGAAACATAG
66 ATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAG
* * * **
1966258 TCTTTTCACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGAAATGCGATTTTCCCAAGAAA
131 TCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAA
* *
1966323 TTTTTGTACGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAATTTTGATCTTCATT
196 -TTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATT
* * * *
1966388 CATTTTGTGGTTAGGTACTATAAAAACATTCTCCTCTTCAAGATTACTAATATTGATGATTTTCT
260 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT-AAGATTAATGATATTGATGATTTTCT
*
1966453 TTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGAC
324 TTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * *
1966518 AACCATCGATTCTCGTAATAATCTCCACTCTTTTCAAGATTGGGATCCCAAAACACGTTCTATTC
389 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTC
* *
1966583 TTTAGGATACATGACAATGAT
454 ATTAGGATACATGACAGTGAT
* ** * * *
1966604 GCTATGGGGTCGCAAGAAAAGC-TTTTTT-CACCGTTTTTTATAGAATCAAAGTTTGACTCTTAA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
** * * *
1966667 ATTGGACAAACATGAATAGTTATACTATT-CCTCATTATTTTCAAGGTTAGGCACTTTAAAC-AA
66 ATAAGACAAACATGAATACTTATACTATTCCCT-ATTCTTTTCAAGATTAGGCACTTTAAACAAA
* * * * *
1966730 CTCCTCTCACTAGGATACATGATATTAGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAA
130 GTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAA
* * *
1966795 ATTTTGTAAGGTTAAAATTCGTGCCTCAAATGAGCCAAACGTGGATATTAGTTTTGATCTTCATT
195 ATTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATT
* * * * *
1966860 CATTTTGTGATTAGGCATTATAAAAACATTCTCTTCTTTAAGATTAACGATATTGAT-TTTTTTT
260 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-TTAAGATTAATGATATTGATGATTTTCT
** * *
1966924 TTTGCA-TGAAATTCTTTTCTTTGCCCTATTTTTTTTAAAATCAAAGTTCAGCTCTTAAATAAGA
324 TTTGCATTGAAA-TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * *
1966988 CAAGCGTTGATTCTTGTAACAATCTCCATTCTTTTCATGATTGGCATCCAAAAACACATTCTATT
388 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
*
1967053 CATTAAGATACATGACAGTGAT
453 CATTAGGATACATGACAGTGAT
* *
1967075 GCTTTGGTATCGCAAG-AAAGCTTTTTTTCTACT-ATTTTGATTA-AATCAAAGTTTGTCTCTTA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGA-TAGAATCAAAGTTTGTCTCTTA
* * *
1967137 AATAAGACAAACATGAAAACTTAAACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATA
65 AATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAA
* * * *
1967202 GTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTTGCAAGCAACGCTGTTTTCCCAAGAA
130 GTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAA
* * * *
1967267 ATTTTTGTATGGTCTAAATTCATGCCTTAAATGAGCCAAACGTGGATACTAG-TTTGTTCTTCAT
195 A-TTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCAT
* *
1967331 TCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTCAAGATTACTGATATTGGTGATTTTC
259 TCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT-AAGATTAATGATATTGATGATTTTC
* * *
1967396 TTTTGCTTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATGAATGTTCATCCCTTAAATAAGA
323 TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * *
1967461 CAAGCATCAATTCTCGTAACAATCTCCGTTCTTTTCAAGATTGGGATCCAAAAACACATTCTATT
388 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
* *
1967526 CATTAGGATAAATGACAATGAT
453 CATTAGGATACATGACAGTGAT
* * * * *
1967548 GCTATGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAATTTTGTCTCCTAA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
1967613 ATTAGACAAACATTAATACGTATACTATTCCCCATTCTTTTCAAGATTAGGTACTTTAAACAAAG
66 ATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAG
* * * *
1967678 T-TTCTCGCTAGGATACATGATATTGGTGCTTTCGTTTTGCAAGAAAGGCTTTTTTCCCATGAAA
131 TCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAA
* * * * *
1967742 TTTTGTAAGGTCAAAATTCGTACCTCAAATGAGCCAAACATGGATACTACTTTTGATCTTCTTTC
196 TTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTC
*
1967807 ACTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTT
261 ATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-TTAAGATTAATGATATTGATGATTTTCTT
* * * *
1967872 TAGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCA
325 TTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* ** **
1967937 AGCATTGATTCTCACAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCCCTTCA
390 AGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCA
*
1968002 TTAGGATACATGACTA-TGGT
455 TTAGGATACATGAC-AGTGAT
* * *
1968022 GCTTTGGTGTCGCAAGAAACA-CTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTCTCTT
1 GCTTTGGTATCGCAAGAAA-AGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *** * * *
1968086 AAATCAGACAAACAAGAAAACTCGCACTATTCCCCATTGTTTTCAAGATTAGGTACTTTAAACAA
64 AAATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAA
* * * * ** **
1968151 ACTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAATGG-TTTTTTTACACCA
129 AGTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGA
* * * * *
1968215 ATTTTTGTAAGGTCAAAATTCGTGCCTTAAATGAGCCAGATGTGGATACTAGTTTTGATCTTCAT
194 AATTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCAT
* *
1968280 TCATTTTGTGATTAGGCACTATAAAAACGTCCTCCTCTTTAAGATTAATGATATTGATGATTTTC
259 TCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-TTAAGATTAATGATATTGATGATTTTC
** *
1968345 TTTTGCAAAGAAATCTTTTCTTTGCCCTTTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
323 TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * *
1968410 CAAGCATCAATTCTCATAACAATCTCCATTCTTTCCATGATTGGGATCCAAAAATACATTCTATT
388 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
* * * *
1968475 CATTAAGATACGTGATAGGGAT
453 CATTAGGATACATGACAGTGAT
* * * *
1968497 GCTTTGGTATCGTAAG-AAAGTTTTTTTTCCACTGTTTTTGATAAAATCAAAGTTTATCTCTTAA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
*
1968561 ATAAGACAAACATGAAAACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAA
66 ATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACA-AA
* * *
1968626 -TCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGTAAGAAATGCTGTTTTCCCAAGAA
130 GTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAA
* * * *
1968690 ATTTTGTATGGTCTAAATTCATGCCTTAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATT
195 ATTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATT
* ** * *
1968755 CATTTTGTGATTAGGCACTGTAAAAATGTTCTCCTCTTTAAGATGAATCATATTGATGATTTTCT
260 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-TTAAGATTAATGATATTGATGATTTTCT
* *** *
1968820 TTTGCTTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTGTTTAAATAAAAC
324 TTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * *
1968885 AAGCATCGATTCTCGTAGCAATCTCCA-T-TTTTCAAGAATGGGATCAAAAAACACATTTTATTC
389 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTC
*
1968948 ATTAGGATACACGACAGTGAT
454 ATTAGGATACATGACAGTGAT
* * * ** * * *
1968969 GCTTTGGTGTCGTAAGAAAATCTTTTTTTCTGCTGTTATTGATAAAATTAAAGTTTGTCTCTTAA
1 GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * ** ***
1969034 ATAAGACAAACATGAATAGTCATACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTA
66 ATAAGACAAACATGAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACAAA
** ** * * * * **
1969098 GT-TT-TCTGTAAGGATACA-GATATTAATGCTTTTGTTTCACAAGAAAGGCTTTCTTCCTACTA
130 GTCTTCTCACT-AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGA
* *
1969160 ATTTTTGTGAA-GTCAAAATTCATTCCTCAAA
194 AATTTTGT-AAGGTCAAAATTCATGCCTCAAA
1969191 ATTCATTCCT
Statistics
Matches: 3097, Mismatches: 401, Indels: 90
0.86 0.11 0.03
Matches are distributed among these distances:
470 10 0.00
471 287 0.09
472 304 0.10
473 522 0.17
474 606 0.20
475 606 0.20
476 468 0.15
477 8 0.00
478 4 0.00
479 138 0.04
480 144 0.05
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (474 bp):
GCTTTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAG
TCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAA
TTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTC
ATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTAAGATTAATGATATTGATGATTTTCTTT
TGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
GCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
TAGGATACATGACAGTGAT
Found at i:1969191 original size:14 final size:14
Alignment explanation
Indices: 1969172--1969200 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1969162 TTTTGTGAAG
1969172 TCAAAATTCATTCC
1 TCAAAATTCATTCC
1969186 TCAAAATTCATTCC
1 TCAAAATTCATTCC
1969200 T
1 T
1969201 ACTATTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (14 bp):
TCAAAATTCATTCC
Found at i:1970096 original size:473 final size:473
Alignment explanation
Indices: 1969202--1971695 Score: 3066
Period size: 473 Copynumber: 5.3 Consensus size: 473
1969192 TTCATTCCTA
* * *
1969202 CTATTCATTAGGATACATGATAATGATGCTATGCTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* *
1969267 TTGATAGAATCAAAGTTTGTGTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTCT
* *
1969332 TTTCAAGATTAGGAACTTTAAACAAAGTCTTCTCACTAGGGTACACGATATTGGTGCTTTCGTTT
131 TTTCAAGATTAGGAACTTTAAACATAGTCTTCT-A-TAGGATACACGATATTGGTGCTTTCGTTT
* *** * * *
1969397 CACAAGAAAGGCTTTTTTCCCGTGAAATTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAA
194 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAA
* *
1969462 TGTGGATACCAGTTTTGATCTTCATTCA-TTATGTGATTAGGCACTATAAAAACATTCTCCTC-T
259 CGTGGATACTAGTTTTGATCTTCATTCACTT-TGTGATTAGGCACTATAAAAACATTCTCCTCAT
* * *
1969525 CTAAGATTAACGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
323 -TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* ** *
1969590 AAATCAAAGTTCGTCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
387 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAA
*
1969655 GATTAGGATCCAAAAACACATT
452 GATTGGGATCCAAAAACACATT
* * * ** **
1969677 TTATTCTTTAGGATATATGACAATGATGCTTTGGTGTCGTGAGAAAAGCTTTTTTTCCATTGTTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* * * ** * * * *
1969742 TTGATAGAATCAAAGTTTATCTCTTAGATAAGACAAACACCAATAGTCATACTAATCTCCATTTT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTCT
* * ** ** * **
1969807 TTTCGAGATTAGGCACCATAAATGTAGCCTTCTATAAGGATACA-GATATTAATGCTTTCGTTTC
131 TTTCAAGATTAGGAACTTTAAACATAGTCTTCTAT-AGGATACACGATATTGGTGCTTTCGTTTC
* * * *
1969871 ACAATAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCAAAATTCGTGCCTCAAA-GAAGCCAAA
195 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATG-AGCCAAA
* * ** *
1969935 CATGGACT-CAAGTTTTGATCTTTTTTCACTTTGTAATTAGGCACTATAAAAACATTCTCCTCAT
259 CGTGGA-TACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT
* *
1969999 TAAGATTAATGATATTGATGATTTTCTTTCACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAA
323 TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* *
1970064 AATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCACAACAATCTCCATTCTTTTCAAG
388 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAG
* *
1970129 TTTGGGATCCAAAAACATATT
453 ATTGGGATCCAAAAACACATT
** * * * * * *
1970150 CCCTTCATTAGGGTACATGACTATGGTGTTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCGTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTT
* ** * * *
1970215 TTGGATAGAATCAAAGTTCATCTCTTAAATTAGACAAAAATGAAAACTCGTACTATTCCCCATTC
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTC
* * * * *
1970280 TTTTCAAGATTAGGGACTTTAAACATAGTCTTCCCATTAGGGTACACGATATTGGTGCGTTGGTT
130 TTTTCAAGATTAGGAACTTTAAACATAGTCTT-CTA-TAGGATACACGATATTGGTGCTTTCGTT
* * * * * *
1970345 TCGCAAGAAAGGATTTTTTCCCACCAATTTTCGTAAAGTCAAAATCCATGCCTCAAATGAGCTAG
193 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
1970410 ACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGTACTATAAAAACATTCTCTTCTT
258 ACGTGGATACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCAT
* * * * * * *
1970475 TAAGATTAACGATACTGACGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAA
323 TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * * *
1970540 AATCAAAGTTCAGCCCTTAAAAAAGACAAGCGTTGATTCTCGCAACAATCTACATTCTTTTCATG
388 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAG
1970605 ATTGGGATCCAAAAACACATT
453 ATTGGGATCCAAAAACACATT
* * * * * * *
1970626 CTATTAATTAGGATACATGACAGTGATGCTTCGGTGCCGTAGGAAAAGCTTGTTTTCCACCG-TT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* * * *
1970690 TTGATCA-AATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTTATCCTATTCCCTATTA
66 TTGAT-AGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTC
* * * * * *
1970754 TTTTCAAGATTACGCACTTTAAACAAAGTCTTTTCACTAGGATATACGATATTGGTGCTTTCATT
130 TTTTCAAGATTAGGAACTTTAAACATAGTCTTCT-A-TAGGATACACGATATTGGTGCTTTCGTT
* *** ** * *
1970819 TTGCAAGAAAGGCTTTTTTAATATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGCGCCA
193 TCGCAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
1970884 AACGTGGATACTAGTTTTGATCTTCTTTCATTTTGGGATTAGGCACTATAAAAACATTCTCCTCA
257 AACGTGGATACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCA
* *
1970949 TTAAGATTAATGATATTGGTGATTTTCTTTCGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTA
322 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
1971014 AAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAA
387 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAA
1971079 GATTGGGATCCAAAAACACATT
452 GATTGGGATCCAAAAACACATT
* * * * **
1971101 CTATTCATTAGGATACATTACGATGATGCTTTGATGTCGCAAGAAAAGCTTTTTTCCCTTCGTTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
* * * * * * *
1971166 GTGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATTCTAATT-TCCATTT
66 TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACT-ATTCCCCATTC
** * ** ** * **
1971230 TTTTCTGGATCAGGAACCATAAATGTAGACTTCTATAAGGATACA-GATATTAATGC-TTCTGTT
130 TTTTCAAGATTAGGAACTTTAAACATAGTCTTCTAT-AGGATACACGATATTGGTGCTTTC-GTT
* * * * *
1971293 TCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTGAAGTCAAAATCCGTGCCTCAAATAAGCCAA
193 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* *
1971358 ACGTGGA-ATCTAGTTTTGATCTTCATTCACTTTGTCATTAGGCACTGTAAAAACATTCTCCTCA
258 ACGTGGATA-CTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCA
1971422 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
322 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
1971487 AAATCAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAA
387 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAA
1971552 GATTGGGATCCAAAAACACATT
452 GATTGGGATCCAAAAACACATT
** * * * * *
1971574 CCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCGTT
1 CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTT
* * * * *
1971639 TTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTACTATT
65 TTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATT
1971696 GATGATTTTC
Statistics
Matches: 1705, Mismatches: 293, Indels: 44
0.83 0.14 0.02
Matches are distributed among these distances:
472 2 0.00
473 581 0.34
474 312 0.18
475 441 0.26
476 365 0.21
477 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
CTATTCATTAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTT
TTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTCATACTATTCCCCATTCT
TTTCAAGATTAGGAACTTTAAACATAGTCTTCTATAGGATACACGATATTGGTGCTTTCGTTTCG
CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACG
TGGATACTAGTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAA
GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATT
GGGATCCAAAAACACATT
Found at i:1971898 original size:257 final size:257
Alignment explanation
Indices: 1971435--1971913 Score: 681
Period size: 257 Copynumber: 1.9 Consensus size: 257
1971425 AGATTAATGA
**
1971435 TATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
1 TATTGATGATTTTCTTTCGCATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
* * *
1971500 TCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCACTATTTTCAAGATTGGGATCCAA
* * * * * *
1971565 AAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAATGCATTTCTT
131 AAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCGCAAGAAAAGCATTTCTT
1971630 TCCACCGTTTTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTAC
196 TCCACCGTTTTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTAC
* * * **
1971692 TATTGATGATTTTCTTTTGCTTCAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTTA
1 TATTGATGATTTTCTTTCGCATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
* *** *
1971757 TCCCTTAAATAAGACATGCATCGATTCTCGTGACAATCTCCACTCTTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCACTATTTTCAAGATTGGGATCCAA
* * * *
1971822 AACCACATTCTATTAATTAGGATACATGAC-AGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTT
131 AAACACATTCCATTAATTAGGATACATGACTA-TGATGCTTTGGTATCGCAAGAAAAGCATTTCT
* * * *
1971886 TTCTATCGTTTTTTATAGAATCACAGTT
195 TTCCACCGTTTTTGATAGAATCAAAGTT
1971914 TATCTCTCAA
Statistics
Matches: 192, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
256 1 0.01
257 191 0.99
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (257 bp):
TATTGATGATTTTCTTTCGCATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
TCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCACTATTTTCAAGATTGGGATCCAA
AAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCGCAAGAAAAGCATTTCTT
TCCACCGTTTTTGATAGAATCAAAGTTCGTCCCTTAAATTATACAAACATGAAAACTCGTAC
Found at i:1973231 original size:473 final size:472
Alignment explanation
Indices: 1971692--1973357 Score: 1998
Period size: 473 Copynumber: 3.5 Consensus size: 472
1971682 AAACTCGTAC
* * * *
1971692 TATTGATGATTTTCTTTTGCTTCAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTTA
1 TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* ** *
1971757 TCCCTTAAATAAGACATGCATCGATTCTCGTGACAATCTCCACTCTTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* *
1971822 AACCACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTT
131 AAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTT
* * * * * * * *
1971887 TCTATCGTTTTTTATAGAATCACAGTTTATCTCTCAAATAAGGCAAGCGTGAATAGTCATACTAA
196 T-T-CCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
1971952 TCTCCATTTTTTTGGCATTAGGCACCATAAATGTAGTCTTCT-ATAAGGATACATGATATTGATG
259 TCTCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACAAGATATTGATG
* * * *
1972016 CTTTCGTTTCACAAGCAAGGCTTTCTTCCCACCAA-TTTTGTAAAGTCAAAGTTCGTGCCTTAAA
324 CTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAA
* * *
1972080 TAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGGCACTATAAAAGCATT
389 TAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAACATT
1972145 CTCCTCATTAAGATTAATGA
454 CTCCTCATTAAGATTAAT-A
* * * * *
1972165 TATTGGTGATTTTCTTTTGCACGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAATGTTCA
1 TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* *
1972230 TCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * * *
1972295 AAACACATTCTATTCATTAAGATACCTGAC-GATGATGCTTTGGTGTCGCAAAAAAATCTTTTTT
131 AAACACATTCTATTAATTAGGATACATGACAG-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * * * * * * * *
1972359 TCCTT-CGTTTATGATAGAGTCGAAGTTTGGCTCTTAAATAAGACAAACTTGAATACTCTTACT-
195 T--TTCCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* ** ** * * *
1972422 A-CTCCATGTTCCTTTCAGGATTAGGCACTTTAAACATAGTTTTCTCTTAAGGATACAAAATATT
258 ATCTCCAT-TT--TTTCGGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACAAGATATT
* * *
1972486 AATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTTCGTGCCT
320 GATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCAAAGTTCGTGCCT
* * * * * * *
1972551 CAATTGAGCTAAACATGGATTCTAGTTTTGATCATCATTCATTTTGTGATTAGGCACAATAAAAA
385 CAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAA
* *
1972616 CATTCTCCTCTTTAAGATTAATG
450 CATTCTCCTCATTAAGATTAATA
* *
1972639 TATTGATGATTTTTTTTTTGCAGTG-AAA--TTTT-TTTGCCTCT-TTCTCCTTAAAATCAAAGT
1 TATTGATGA-TTTTCTTTTGCA-TGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGT
* * *
1972699 TTATCCCTTAAGTAAGACAAGCATCGATTCTCGTC-ACAATCTCCATTCTTTTCAAGATTGGCAT
63 TCATCCCTTAAATAAGACAAGCATCGATTCTCG-CAACAATCTCCATTCTTTTCAAGATTGGGAT
* * *
1972763 CCAAAAACACATTCTCTTAATTAGGATACGTGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTT
127 CCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* *
1972828 TTTTTTGCCATTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGC
192 TTTTTT-CCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
* * * *
1972893 TAATCTCCATTTTTTGGGGATTAGACACCATAAATGTAGTCTTCTCGTAAGGATACACGATATTG
256 TAATCTCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACAAGATATTG
* * * * *
1972958 ATGCTTTCGTTTCGTAAAAAAGGCTTTCTTCCTACTAATTTTTGTAAAGTTAAAGTTTC-TACC-
321 ATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCAAAG-TTCGTGCCT
** * * *
1973021 CAAGCAAGCCAAATGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGAAGTATAAAAA
385 CAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAA
*
1973086 CATTCTCCTCAATAAGATTAAATA
450 CATTCTCCTCATTAAGATT-AATA
* * *
1973110 TATTGGTGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACA
1 TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * * *
1973175 TCCCTTAATTAAGGCGAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
** * * * * *
1973240 AAACACATTCCCTTCATTACGG-TACATGACTA-TGGTGCGTTGGTGTCGCAAGAAATGC-ATTT
131 AAACACATTCTATTAATTA-GGATACATGAC-AGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT
* * * *
1973302 CTTTCCACTGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATTATACAAACATGAA
194 TTTTCCA-T-TTTTT-ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
1973358 AACTCGTACT
Statistics
Matches: 1015, Mismatches: 148, Indels: 59
0.83 0.12 0.05
Matches are distributed among these distances:
469 2 0.00
470 92 0.09
471 110 0.11
472 250 0.25
473 342 0.34
474 102 0.10
475 116 0.11
476 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (472 bp):
TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
AAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTT
TTCCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
TCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACAAGATATTGATGCT
TTCGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATA
AGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAACATTCT
CCTCATTAAGATTAATA
Found at i:1973605 original size:273 final size:273
Alignment explanation
Indices: 1973109--1973630 Score: 723
Period size: 273 Copynumber: 1.9 Consensus size: 273
1973099 AAGATTAAAT
* *
1973109 ATATTGGTGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTAC
1 ATATTGATGATTTTCTTTCGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTAC
* * *
1973174 ATCCCTTAATTAAGGCGAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATTGGGATCCA
66 ATCCCTTAAATAAGACGAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATTGGGATCCA
* * * * * *
1973239 AAAACACATTCCCTTCATTACGGTACATGACTATGGTGCGTTGGTGTCGCAAGAAATGCATTTCT
131 AAAACACATTCCATTAATTACGGTACATGACTATGATGCGTTGGTATCGCAAAAAAAGCATTTCT
* * * *
1973304 TTCCACTGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATTATACAAACATGAAAACTCGTACTA
196 TTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAAAACTCGTACTA
1973369 TTGATGATTAAGG
261 TTGATGATTAAGG
* * *
1973382 ATATTGATGATTTTCTTTTGCTTGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
1 ATATTGATGATTTTCTTTCGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTAC
*
1973447 ATCCCTTAAATAAGAC-ATGCATCGATTCTCGA-AACAATCTCCATTCTTTTCAAGATTGGGATC
66 ATCCCTTAAATAAGACGA-GCATCGATTCTC-ACAACAATCTCCATTATTTTCAAGATTGGGATC
* * *
1973510 CAAAAACACATTCTATTAATTA-GGATACATGAC-AGTGATGCTTTGGTATCGCAAAAAAAGCTT
129 CAAAAACACATTCCATTAATTACGG-TACATGACTA-TGATGCGTTGGTATCGCAAAAAAAGCAT
* * *
1973573 TTTTTTCTATCAT-TTTTT-ATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAA
192 TTCTTTCCA-C-TGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAA
1973631 TAGTCATATA
Statistics
Matches: 218, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
272 4 0.02
273 206 0.94
274 7 0.03
275 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (273 bp):
ATATTGATGATTTTCTTTCGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTAC
ATCCCTTAAATAAGACGAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATTGGGATCCA
AAAACACATTCCATTAATTACGGTACATGACTATGATGCGTTGGTATCGCAAAAAAAGCATTTCT
TTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAAAACTCGTACTA
TTGATGATTAAGG
Found at i:1974425 original size:471 final size:470
Alignment explanation
Indices: 1973374--1977410 Score: 4874
Period size: 471 Copynumber: 8.5 Consensus size: 470
1973364 TACTATTGAT
* * *
1973374 GATTAAGGATATTGATGATTTTCTTTTGCTTGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATG-AAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1973439 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
1973504 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTATCGCAAAAAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAAAA
* * * * *
1973569 GCTTTTTTTTCTATCATTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATAG
193 GCTTTTTTTCCT-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * *
1973634 TCATA-TAATCTCCATTTTTTC-GGCATTAGGCACC-ATAAATGCAGTCTTCT-ATAAGGATACA
257 TCATACTAATCTCCTTTTTTTCAGG-ATTAGGC-CCTATAAATGTAGTCTTCTCTTAAGGATACA
* * * *
1973695 TGATATTGACGCTTTCGTTTCACAAGCAAGGCTTTCTTCCCACCAA-TTTTGTAAAGTCAAAGTT
320 CGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCAAAGTT
* * *
1973759 CGTGCCTTAAATAAGCCAAAGGTGGATTCTAGTTTTGATCTTCACTT-ATTTTGGGATTAGGCAC
384 CGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA-TTCATTTTGTGATTAGGCAC
1973823 TATAAAAACATTCTCCTCATTAA
448 TATAAAAACATTCTCCTCATTAA
*
1973846 GATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCAT-GAAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
1973911 CAATGTTCATCCCTTAAATAAGACAAGTATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
*
1973976 GGGATCCAAAAACACATTCTATTCATTAGGATACCTGACGATGATGCTTTGGTGTCGCAAGAAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* * * * *
1974041 TCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGACAAACATGAATACT
193 GCTTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * ** *
1974106 CTTACT-A-CTCCTTGTTCCTTTCAGGATTAGGCCCTTTAAACATAGTTTTCTCTTAAGGATACA
258 CATACTAATCTCCTT-TT--TTTCAGGATTAGGCCCTATAAATGTAGTCTTCTCTTAAGGATACA
*
1974169 CGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTT
320 CGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCAAAGTT
* * * *
1974234 CGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACA
384 CGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACT
* *
1974299 ATAAAAACATTCTCCTCTTTAT
449 ATAAAAACATTCTCCTCATTAA
*
1974321 GATTAATG-TATTGATGATTTTTTTTTGCAGTGAAA-TTTT-TTTGCCTCT-TTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCA-TGAAACTTTTCTTTGCC-CTATTTTCCTTAAAAT
* *
1974382 CAAAGTTTATCCCTTAAGTAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
1974447 GGCATCCAAAAACACATTCTATTAATTAGGATACATGATAGTGATGCTTTGGTGTCGCAAGAAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAAAA
* ** * *
1974512 GCTTTTTTTTTCGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
193 GC-TTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * * *
1974577 TCATGCTAATCTCCATTTTTTTGC-GGATTAGGCACGATAAATGTAGTCTACTCGTAAGGATACA
257 TCATACTAATCTCC-TTTTTTT-CAGGATTAGGCCCTATAAATGTAGTCTTCTCTTAAGGATACA
* * * * * *
1974641 CGATATTGATGCTTTCATTTCGAAAAAAAGGCTTTCTTCCTACTAATTTTTGTAAAGTTAAAGTT
320 CGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCAAAGTT
* * ** * * * * *
1974706 TGTACC-CAAGCAAGCCAAATGTGGATTCAAGTTTTGATCTTCATTCATTTTGCGATTAGGAAGT
384 CGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACT
* *
1974770 ATAAAAACATTCCCCTCAATAA
449 ATAAAAACATTCTCCTCATTAA
* * *
1974792 GATTAATGATATTGGTGATTTTCTTTCGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATG-AAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
1974857 CAAAATTAATCCCTTAAATAAGACAAGCAACGATTCTCGTAAAAATCTCCATTCTTTTTAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* *
1974922 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAAAA
* * * * *
1974987 GCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTGTCTCAAATAAGACAAGCATGAATAG
193 GCTTTTTTTCCT-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * * * *
1975052 TCATACTAAGCTCCATTTTTTCTGCATTAGGCACC-ATAAATGTAGTCTTCT-ATAAGGATACAT
257 TCATACTAATCTCCTTTTTTTCAGGATTAGGC-CCTATAAATGTAGTCTTCTCTTAAGGATACAC
* *
1975115 GATATTGATGCTTTCGTTTCACAAGCAAGGCTTTCTTCCCACCAA-TTTTGTAAAGTCAAAGTTC
321 GATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCAAAGTTC
* * *
1975179 GTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGAGATTAGGCACTA
385 GTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTA
*
1975244 TGAAAACATTCTCCTCATTAA
450 TAAAAACATTCTCCTCATTAA
*
1975265 GATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCAT-GAAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
1975330 CAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
1975395 AGGATCCAAAAACACATTCTATTCATTAGGATACCTGACGATGATGCTTCGGTGTCGCAAGAAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* * * *
1975460 GCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGACAAACATGAATACT
193 GCTTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * ** * *
1975525 C-TGACT-A-CTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACATACTTTTCTCTTAAGGATAC
258 CAT-ACTAATCTCCTT-TT--TTTCAGGATTAGGCCCTATAAATGTAGTCTTCTCTTAAGGATAC
* **
1975587 ACGATATTGATGCTTTCGTTTAGCAAGAAAGAATTTCTTCCCCCTAATTTTTGTAAAGTCAAAGT
319 ACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCAAAGT
* * * *
1975652 TCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGATATTCATTCATTTTGTGATTAGGCAC
383 TCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCAC
* *
1975717 AATAAAAACATTCTCCTCTTTAA
448 TATAAAAACATTCTCCTCATTAA
* * *
1975740 GATTAATG-TATTGATGATTTTTTTTTGCAGTGAAA-TTTT-TTTGCATCT-TTTTACTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCA-TGAAACTTTTCTTTGC-CCTATTTTCCTTAAAAT
* * *
1975801 CAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTTACAATCTCCATTCTATTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
1975866 GGCATCCAAAAACACATTCTATTAATTATGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAAAA
* *
1975931 GCTTTTTTTGC-T-GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
193 GCTTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * ** * * * *
1975994 CATGCTAATCTCCATTTTTTGGGGATTAGG-CATGATAAATGTTGTCTTCTCGTAGGGATACACG
258 CATACTAATCTCCTTTTTTTCAGGATTAGGCCCT-ATAAATGTAGTCTTCTCTTAAGGATACACG
* * * * * * *
1976058 ATATTGATACTTTCGTTTCGAAAAAAAGGCTTTCTTCCTACTAAATTTTGTAAAGTCAAAGTTTG
322 ATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCAAAGTTCG
* ** * * *
1976123 TACC-CAAGCAAGCCAAATGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGAACTAT
386 TGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTAT
1976187 AAAAACATTCTCCTCATTAA
451 AAAAACATTCTCCTCATTAA
* **
1976207 GATTAATGATATGGATGATTTTCTTTCACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCAT-GAAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
** * * * *
1976272 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAATAATCTGCATTTTTTTCAAGTTT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
** * * * *
1976337 GGGATCCAAAAACACATTCCCTTCATTAGGGTATATGACTATGGTGCTTTGGTGTCGCAAGAAAT
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* * ** * *
1976402 GCATTTCTTTCC-ACTGTTTTTGATAGAATCAAAGTTCATCTCTTAAATTAGACAAACATGAAAA
193 GC-TTTTTTTCCTTC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* ** * * * * * ** * * *
1976466 CTTGTACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACATAGTGTTCCCATT-AGCATAC
256 GTCATACTAATCTCC-TTTTTTTCAGGATTAGGCCCTATAAATGTAGTCTTCTC-TTAAGGATAC
* * * * * * * * * *
1976530 ACGATATTGGTGCATTGGTTTTGCAAGAAAGGTTTTTTTCCTACCAATTTTCGTAAGGTCAAAAT
319 ACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCAAAGT
* * * * *
1976595 TCGTGCCTCAAATGAGCCAGACGTGGATACTAGTTTCGATCTTCATTCATTTTGTGATTAGGTAC
383 TCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCAC
*
1976660 TATAAAAACATTCT-CTTATTTAA
448 TATAAAAACATTCTCCTCA-TTAA
** * * *
1976683 G-TTAACAATATTAACGATTTTCTTTTGCATGAAAATCTTTTCTTTG-CCTATTTTTCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATG-AAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
1976746 AAAAGTTCAGCCCTTAAAAAAGACAAGCGTTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * * *
1976811 GGGATCCAAAAACACATTCTCTTCATTAGGATACATGACGATGATGCTTTGATGTTGCAAGGAAA
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* * *
1976876 GCTTTTTTCCCTTCCTTTATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
193 GCTTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * *
1976941 CATTCTAATCTCCATTTTTTTCTGGATAAGGCACC-ATAAATGTAGCCTTCTAC--AAGGATACA
258 CATACTAATCTCC-TTTTTTTCAGGATTAGGC-CCTATAAATGTAGTCTTCT-CTTAAGGATACA
* * * * * *
1977003 -GATATTAATGC-TTCTGTTTCGCAGGAAAGGCTTTCTTCCTACCAATTTTCGTGAAGTCAAAAT
320 CGATATTGATGCTTTC-GTTTCGCAAGAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCAAAGT
* * * *
1977066 CCGTGCCTCAAATAAGCCAAACGTGGAATCTAGTTTTGATCTTCATTCACTTTGTCATTAGGCAC
383 TCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCAC
1977131 TATAAAAACATTCTCCTCATTAA
448 TATAAAAACATTCTCCTCATTAA
*
1977154 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATG-AAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * *
1977219 CAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATT
64 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
** * * *
1977284 GGGATCCAAAAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAAT
129 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* ** * * *
1977349 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATTATACAAACATGAA
193 GC-TTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
1977411 AACTCGTACT
Statistics
Matches: 3046, Mismatches: 444, Indels: 148
0.84 0.12 0.04
Matches are distributed among these distances:
467 80 0.03
468 110 0.04
469 50 0.02
470 25 0.01
471 672 0.22
472 505 0.17
473 570 0.19
474 432 0.14
475 533 0.17
476 69 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (470 bp):
GATTAATGATATTGATGATTTTCTTTTGCATGAAACTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
GATCCAAAAACACATTCTATTCATTAGGATACATGACATGATGCTTTGGTGTCGCAAGAAAAGCT
TTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
ACTAATCTCCTTTTTTTCAGGATTAGGCCCTATAAATGTAGTCTTCTCTTAAGGATACACGATAT
TGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCAAAGTTCGTGCCT
CAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAA
CATTCTCCTCATTAA
Found at i:1977173 original size:947 final size:945
Alignment explanation
Indices: 1973374--1977421 Score: 4991
Period size: 947 Copynumber: 4.3 Consensus size: 945
1973364 TACTATTGAT
* * *
1973374 GATTAAGGATATTGATGATTTTCTTTTGCTTGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
1973439 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGA-AACAATCTCCATTCTTTTCAAGAT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ACAACAATCTCCATTCTTTTCAAGAT
* * *
1973503 TGGGATCCAAAAACACATTCTATTAATTAGGATACATGAC-AGTGATGCTTTGGTATCGCAAAAA
129 TGGGATCCAAAAACACATTCTATTCATTAGGATACATGACTA-TGATGCTTTGGTGTCGCAAGAA
* * * *
1973567 AAGCTTTTTTTTCTATCAT-TTTTT-ATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGA
193 AAGCATTTTTTTCCA-C-TGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * *** *
1973630 ATAGTCATA-TAATCTCCATT-TTTTCGGCATTAGGCACCATAAATGCAGTCTT-CTATAAGGAT
256 ATACTCGTACTAATCCCCATTCTTTTCGG-ATTAGGCACTATAAACATAGTCTTCCCATAAGGAT
* * * * *
1973692 ACATGATATTGACGCTTTCGTTTCACAAGCAAGGCTTTCTTCCCACCAA-TTTTGTAAAGTCAAA
320 ACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCAAA
* * *
1973756 GTTCGTGCCTTAAATAAGCCAAAGGTGGATTCTAGTTTTGATCTTCACTT-ATTTTGGGATTAGG
385 GTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA-TTCATTTTGTGATTAGG
* *
1973820 CACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCT
449 CACTATAAAAACATTCT-CTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCT
* * * *
1973885 TTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGTATTGATTCTCG
513 TTTCTTTG-CCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * *
1973950 TAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACCTGAC
577 TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGAC
* *
1974015 -GATGATGCTTTGGTGTCGCAAGAAAATCTTTTTTTCCT-TCGTTTATGATAGAATCGAAGTTTG
642 AG-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCTATCGTTTATGATAGAATCAAAGTTTG
* * * *
1974078 GCTCTTAAATAAGACAAACATGAATACTC-TTACT-A-CTCCTTGTTCCTTTCAGGATTAGGC-C
706 TCTCTTAAATAAGACAAACATGAATAGTCATT-CTAATCTCCAT-TT--TTTCTGGATTAGGCAC
* ** * *
1974139 CTTTAAACATAGTTTTCTCTTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTT
767 C-ATAAATGTAGTCTTCTC-TAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* * * *
1974204 CTTCC-CCCTAATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTT
830 CTTCCTACC-AA-TTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTT
* * * *
1974268 TTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAT
893 TTGATCTTCATTCATTTTGTCATTAGGCACTATAAAAACATTCTCCTCATTAA
*
1974321 GATTAATG-TATTGATGATTTTTTTTTGCAGTGAAA--TTTT-TTTGCCTCT-TTTTCCTTAAAA
1 GATTAATGATATTGATGATTTTCTTTTGCA-TGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAA
* * **
1974381 TCAAAGTTTATCCCTTAAGTAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGAT
64 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGAT
* *
1974446 TGGCATCCAAAAACACATTCTATTAATTAGGATACATGA-TAGTGATGCTTTGGTGTCGCAAGAA
129 TGGGATCCAAAAACACATTCTATTCATTAGGATACATGACTA-TGATGCTTTGGTGTCGCAAGAA
* * * * * *
1974510 AAGCTTTTTTTTTCGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
193 AAGCATTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * * * ** * * *
1974575 AGTCATGCTAATCTCCATTTTTTTGCGGATTAGGCACGATAAATGTAGTCTACTCGTAAGGATAC
258 ACTCGTACTAATCCCCATTCTTTT-CGGATTAGGCACTATAAACATAGTCTTCCCATAAGGATAC
* * * * *
1974640 ACGATATTGATGCTTTCATTTCGAAAAAAAGGCTTTCTTCCTACTAATTTTTGTAAAGTTAAAGT
322 ACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCAAAGT
* * ** * * * * *
1974705 TTGTACC-CAAGCAAGCCAAATGTGGATTCAAGTTTTGATCTTCATTCATTTTGCGATTAGGAAG
387 TCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCAC
* * * *
1974769 TATAAAAACATTCCCCTCAATAAGATTAATGATATTGGTGATTTTCTTTCGCATGAAAATCTTTT
452 TATAAAAACATT-CTCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTT
* * *
1974834 CTTTACCCTATTTTCCTTAAAATCAAAA-TTAATCCCTTAAATAAGACAAGCAACGATTCTCGTA
516 CTTT-GCCTATTTTCCTTAAAAT-AAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* *
1974898 AAAATCTCCATTCTTTTTAAGATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAG
579 ACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAG
* * * * *
1974963 TGATGCTTTGGTATCGCAAGAAAAGCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTGT
644 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCTATCGTTTATGATAGAATCAAAGTTTGTCT
* * * * *
1975028 CTCAAATAAGACAAGCATGAATAGTCATACTAAGCTCCATTTTTTCTGCATTAGGCACCATAAAT
709 CTTAAATAAGACAAACATGAATAGTCATTCTAATCTCCATTTTTTCTGGATTAGGCACCATAAAT
* * * * *
1975093 GTAGTCTTCTATAAGGATACATGATATTGATGCTTTCGTTTCACAAGCAAGGCTTTCTTCCCACC
774 GTAGTCTTCTCTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACC
*
1975158 AATTTTGTAAAGTCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCAT
839 AATTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCAT
* ** *
1975223 TTATTTTGAGATTAGGCACTATGAAAACATTCTCCTCATTAA
904 TCATTTTGTCATTAGGCACTATAAAAACATTCTCCTCATTAA
*
1975265 GATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** *
1975330 CAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGATT
* * * *
1975395 AGGATCCAAAAACACATTCTATTCATTAGGATACCTGACGATGATGCTTCGGTGTCGCAAGAAAA
130 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACTATGATGCTTTGGTGTCGCAAGAAAA
* * * *
1975460 GC-TTTTTTTCC-TTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGACAAACATGAATA
195 GCATTTTTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* *** * * * * * *
1975523 CTC-TGACTACTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACATACTTTTCTCTTAAGGATAC
259 CTCGT-ACTAATCCCCATT-CTTTTCGGATTAGGCACTATAAACATAGTCTTCCCATAAGGATAC
* ** *
1975587 ACGATATTGATGCTTTCGTTTAGCAAGAAAGAATTTCTTCC-CCCTAATTTTTGTAAAGTCAAAG
322 ACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACC-AATTTTTGTAAAGTCAAAG
* * * *
1975651 TTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGATATTCATTCATTTTGTGATTAGGCA
386 TTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCA
* * *
1975716 CAATAAAAACATTCTCCTCTTTAAGATTAATG-TATTGATGATTTTTTTTTGCAGTG-AAA--TT
451 CTATAAAAACATTCT-CTCATTAAGATTAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTT
* * *
1975777 TT-TTTGCATCT-TTTTACTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
514 TTCTTTGC--CTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * *
1975840 TTACAATCTCCATTCTATTCAAGATTGGCATCCAAAAACACATTCTATTAATTATGATACATGAC
577 TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGAC
* * *
1975905 AGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTGC--T-GTTTTTGATAAAATCAAAGTTTGT
642 AGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCTATCGTTTATGATAGAATCAAAGTTTGT
* ** **
1975967 CTCTTAAATAAGACAAACATGAATAGTCATGCTAATCTCCATTTTTTGGGGATTAGGCATGATAA
707 CTCTTAAATAAGACAAACATGAATAGTCATTCTAATCTCCATTTTTTCTGGATTAGGCACCATAA
* * * * *
1976032 ATGTTGTCTTCTCGTAGGGATACACGATATTGATACTTTCGTTTCGAAAAAAAGGCTTTCTTCCT
772 ATGTAGTCTTCTC-TAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCT
* * * ** *
1976097 ACTAAATTTTGTAAAGTCAAAGTTTGTACC-CAAGCAAGCCAAATGTGGATTCTAGTTTTGATCT
836 AC-CAATTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCT
*
1976161 TCATTCATTTTG-CGATTAGGAACTATAAAAACATTCTCCTCATTAA
900 TCATTCATTTTGTC-ATTAGGCACTATAAAAACATTCTCCTCATTAA
* **
1976207 GATTAATGATATGGATGATTTTCTTTCACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
1976272 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAATAATCTGCATTTTTTTCAAGTTT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGATT
** * * * *
1976337 GGGATCCAAAAACACATTCCCTTCATTAGGGTATATGACTATGGTGCTTTGGTGTCGCAAGAAAT
130 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACTATGATGCTTTGGTGTCGCAAGAAAA
* ** * *
1976402 GCATTTCTTTCCACTGTTTTTGATAGAATCAAAGTTCATCTCTTAAATTAGACAAACATGAAAAC
195 GCATTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * * *
1976467 TTGTACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACATAGTGTTCCCATTAGCATACAC
260 TCGTACTAATCCCCATTCTTTTC-GGATTAGGCACTATAAACATAGTCTTCCCATAAGGATACAC
* * * * * * * * *
1976532 GATATTGGTGCATTGGTTTTGCAAGAAAGGTTTTTTTCCTACCAATTTTCGTAAGGTCAAAATTC
324 GATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCAAAGTTC
* * * * *
1976597 GTGCCTCAAATGAGCCAGACGTGGATACTAGTTTCGATCTTCATTCATTTTGTGATTAGGTACTA
389 GTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTA
* ** * *
1976662 TAAAAACATTCTCTTATTTAAG-TTAACAATATTAACGATTTTCTTTTGCATGAAAATCTTTTCT
454 TAAAAACATTCTCTCA-TTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * * *
1976726 TTGCCTATTTTTCTTAAAATAAAAGTTCAGCCCTTAAAAAAGACAAGCGTTGATTCTCGTAACAA
518 TTGCCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAA
* *
1976791 TCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGAC-GATGA
583 TCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAG-TGA
* * * * *
1976855 TGCTTTGATGTTGCAAGGAAAGCTTTTTTCCCT-TCCTTTATGATAGAATCAAAGTTTGTCTCTT
647 TGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCTATCGTTTATGATAGAATCAAAGTTTGTCTCTT
*
1976919 AAATAAGACAAACATGAATAGTCATTCTAATCTCCATTTTTTTCTGGATAAGGCACCATAAATGT
712 AAATAAGACAAACATGAATAGTCATTCTAATCTCCA-TTTTTTCTGGATTAGGCACCATAAATGT
* * *
1976984 AGCCTTCTAC-AAGGATACA-GATATTAATGC-TTCTGTTTCGCAGGAAAGGCTTTCTTCCTACC
776 AGTCTTCT-CTAAGGATACACGATATTGATGCTTTC-GTTTCGCAAGAAAGGCTTTCTTCCTACC
* * * *
1977046 AATTTTCGTGAAGTCAAAATCCGTGCCTCAAATAAGCCAAACGTGGAATCTAGTTTTGATCTTCA
839 AATTTT-GTAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCA
*
1977111 TTCACTTTGTCATTAGGCACTATAAAAACATTCTCCTCATTAA
903 TTCATTTTGTCATTAGGCACTATAAAAACATTCTCCTCATTAA
*
1977154 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
1977219 CAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGATT
** * * *
1977284 GGGATCCAAAAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAAT
130 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACTATGATGCTTTGGTGTCGCAAGAAAA
* * * * * *
1977349 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATTATACAAACATGAAAAC
195 GCATTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
1977414 TCGTACTA
260 TCGTACTA
1977422 TTGATGATTA
Statistics
Matches: 2696, Mismatches: 341, Indels: 128
0.85 0.11 0.04
Matches are distributed among these distances:
941 88 0.03
942 309 0.11
943 462 0.17
944 269 0.10
945 251 0.09
946 404 0.15
947 656 0.24
948 250 0.09
949 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (945 bp):
GATTAATGATATTGATGATTTTCTTTTGCATGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGATTG
GGATCCAAAAACACATTCTATTCATTAGGATACATGACTATGATGCTTTGGTGTCGCAAGAAAAG
CATTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
CGTACTAATCCCCATTCTTTTCGGATTAGGCACTATAAACATAGTCTTCCCATAAGGATACACGA
TATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCAAAGTTCGT
GCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATA
AAAACATTCTCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
CCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCT
CCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTTTTCCTATCGTTTATGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATAGTCATTCTAATCTCCATTTTTTCTGGATTAGGCACCATAAATGTAGTCT
TCTCTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTG
TAAAGTCAAAGTTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTT
GTCATTAGGCACTATAAAAACATTCTCCTCATTAA
Found at i:1977642 original size:273 final size:273
Alignment explanation
Indices: 1977154--1977683 Score: 801
Period size: 273 Copynumber: 1.9 Consensus size: 273
1977144 TCCTCATTAA
*
1977154 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1977219 CAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATT
66 CAAAGTACATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATT
* * * * * *
1977284 GGGATCCAAAAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGCAAGAAAT
131 GGGATCCAAAAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCGCAAGAAAA
* * *
1977349 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATTATACAAACATGAAAAC
196 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTCAAATAAGACAAACATGAAAAC
1977414 TCGTACTATTGAT
261 TCGTACTATTGAT
* *
1977427 GATTAATGATATTGATGATTTTCTTTTGCTTGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** *
1977492 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
66 CAAAGTACATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATT
*
1977557 GGGATCCAAAAACACATTCTATTAATTAGGATACATGAC-AGTGATGCTTTGGTATCGCAAGAAA
131 GGGATCCAAAAACACATTCCATTAATTAGGATACATGACTA-TGATGCTTTGGTATCGCAAGAAA
* * * * * * *
1977621 AGCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAA
195 AGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTCAAATAAGACAAACATGAA
1977684 TAGTCATACT
Statistics
Matches: 229, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
272 1 0.00
273 228 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (273 bp):
GATTAATGATATTGATGATTTTCTTTCGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
CAAAGTACATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATT
GGGATCCAAAAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCGCAAGAAAA
GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTCAAATAAGACAAACATGAAAAC
TCGTACTATTGAT
Found at i:1978402 original size:473 final size:474
Alignment explanation
Indices: 1977427--1980045 Score: 3322
Period size: 473 Copynumber: 5.5 Consensus size: 474
1977417 TACTATTGAT
* * *
1977427 GATTAATGATATTGATGATTTTCTTTTGCTTGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
1977492 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
*
1977557 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAAA
131 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA
* * * * *
1977622 GCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATAG
196 GC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * *
1977687 TCATACTAATCTCCATTTTTTC-GGCATTAGGCACCATAAATGTAGTCTTCT-ATAAGGATACAT
260 TCATACTAATCTCCTTTTTTTCAGG-ATTAGGCACCATAAATGTAGTCTTCTCTTAAGGATACAC
** * *
1977750 GATATTGATGCTTTTTTTTCCCAAGCAAGGCTTTCTTCCCACC-AA-TTTTGTAAAGTCAAAGTT
324 GATATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCC-CCTAATTTTTGTAAAGTCAAAGTT
* * * *
1977813 CGTGTCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATGTTGGGATTAGGCACT
388 CGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCACT
*
1977878 ATAAAAACATTCTCCTGATTAA
453 ATAAAAACATTCTCCTCATTAA
*
1977900 GATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
1977965 CAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAACATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
1978030 GGGATCCAAAAACACATTCTATTCATTAGGATACTTGACCA-TGATGCTTTGGTGTTGCAAGAAA
131 GGGATCCAAAAACACATTCTATTAATTAGGATACATGA-CAGTGATGCTTTGGTGTCGCAAGAAA
* ** * * * * * *
1978094 ATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCCTAAATAAGGCAAACATGAATAC
195 AGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* ** *
1978159 TCTTACT-A-CTCCTTGTTCCTTTCAGGATTAGG-ACCATTAAACATAGTTTTCTCTTAAGGATA
260 TCATACTAATCTCCTT-TT--TTTCAGGATTAGGCACCA-TAAATGTAGTCTTCTCTTAAGGATA
* * * *
1978221 CATGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATTTTTGTAAAGTCAAAG
321 CACGATATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAG
* * * ** *
1978286 TTCGTGCCTCAATTGAGCAAAACACGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCA
386 TTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCA
* *
1978351 CAATAAAAACATTCTCC-CGTTTAA
451 CTATAAAAACATTCTCCTC-ATTAA
1978375 GATTAATG-TATTGATGATTTT-TTTTGCA-GTGAAA--TTTT-TTTGCCTCT-TTTTCCTTAAA
1 GATTAATGATATTGATGATTTTCTTTTGCATG-GAAATCTTTTCTTTGCC-CTATTTTCCTTAAA
* *
1978433 ATCAAAGTTTATCCCTTAAGTAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
64 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
*
1978498 TTGGCATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAA
129 TTGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAA
* * *
1978563 AAGCTTTTTTTTCACCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
194 AAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * * *
1978628 GTCATGCTAATCTCCATTTTTT-GGGATTGGGCACGATAAATGTAGTCTACT-TCTAAGGATATA
259 GTCATACTAATCTCCTTTTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCT-TAAGGATACA
* *
1978691 CGATATTGATGCTTTCATTTCACAAGCAAGGCTTTCTT-CCCATCAA-TTTTGTAAAGTCAAAGT
323 CGATATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCCCCT-AATTTTTGTAAAGTCAAAGT
* * *
1978754 TCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGACAC
387 TCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCAC
*
1978819 TTTTAAAAACATTCTCCTCATTAA
452 -TATAAAAACATTCTCCTCATTAA
*
1978843 GATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1978908 CAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* *
1978973 GGGATCCAAAAACACATTCTATTCATTAGGATACCTGAC-GATGATGCTTTGGTGTCGCAAGAAA
131 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAG-TGATGCTTTGGTGTCGCAAGAAA
* ** * * * * *
1979037 ATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGACAAACACGAATAC
195 AGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * ** *
1979102 TCTTACT-A-CTCCTTGTTCCTTTCAGGATTAGGC-CCTTTAAACATAGTTTTCTCTTAAGGATA
260 TCATACTAATCTCCTT-TT--TTTCAGGATTAGGCACC-ATAAATGTAGTCTTCTCTTAAGGATA
** * * *
1979164 CACGATATTGATGCTTTTGTTTCGCAAGAAAGGATTTCTTCCCCTTAATTTTTGTAAAGTCAAAG
321 CACGATATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAG
* * * * * *
1979229 TTTGTGCCTGAATTGAGCCAAACATGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCA
386 TTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCA
* *
1979294 CAATAAAAACATTCTCCTCTTTAA
451 CTATAAAAACATTCTCCTCATTAA
* * *
1979318 GATTAATG-TATTGATGATTTTTTTTTTTGC-CGAGAAA--TTTT-TTTG-CCTCCTTTTCCTTA
1 GATTAATGATATTGATGA--TTTTCTTTTGCATG-GAAATCTTTTCTTTGCCCT-ATTTTCCTTA
*
1979377 AAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
62 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * *
1979442 GATTGGCAACCAAAAACACATTCTATTAATTACGATACATGACAGTGATGCTTTGGTGTCGCAAG
127 GATTGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * * *
1979507 AAAAGCTTTTTTTTCACCATTTTTTATAAAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAA
192 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* ** **
1979572 TAGTCATGCTAATCTCCTTTTTTTGGGGATTAGGCACCATAAATGTAGTCTTCTCGAAAGGATAC
257 TAGTCATACTAATCTCCTTTTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCTTAAGGATAC
* * ** * *
1979637 ACGATATTGATGCTTTCATTTCAAAAAAAAGGCTTTCTTCCTACTAATTTTTGTAATGTTAAAGT
322 ACGATATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAGT
* * ** * * * * ** *
1979702 TTGTACC-CAAGCAAGCCCAATGCGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGTAAG
387 TCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCAC
*
1979766 TATAAAAACATTCTCCTCAATAA
452 TATAAAAACATTCTCCTCATTAA
* * * * *
1979789 GATTAATTATATTGCTGATTTTCTTTCGCATGAAAATCATTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * *
1979854 CAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
** * * * * **
1979919 GGGATCCAAAAACACATTCCCTTCATTAGGGTACTTGACTA-TGGTGCTTTGGTGTCATAAGAAA
131 GGGATCCAAAAACACATTCTATTAATTAGGATACATGAC-AGTGATGCTTTGGTGTCGCAAGAAA
* ** * *
1979983 TGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATTATACAAACATGAA
195 AGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
1980046 AACTCGTACT
Statistics
Matches: 1850, Mismatches: 244, Indels: 103
0.84 0.11 0.05
Matches are distributed among these distances:
467 78 0.04
468 88 0.05
469 21 0.01
470 222 0.12
471 91 0.05
472 184 0.10
473 741 0.40
474 135 0.07
475 197 0.11
476 93 0.05
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (474 bp):
GATTAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA
GCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
CATACTAATCTCCTTTTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCTTAAGGATACACGA
TATTGATGCTTTCATTTCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCAAAGTTCGT
GCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGATTAGGCACTATA
AAAACATTCTCCTCATTAA
Found at i:1979304 original size:943 final size:940
Alignment explanation
Indices: 1977427--1980056 Score: 4102
Period size: 943 Copynumber: 2.8 Consensus size: 940
1977417 TACTATTGAT
*
1977427 GATTAATGATATTGATGATTTTCTTTTGCTTGAAAATATTTTCTTTGCC-CTATTTTCCTTAAAA
1 GATTAATG-TATTGATGATTTT-TTTTGCGTG--AA-ATTTT-TTTGCCTCT-TTTTCCTTAAAA
* *
1977491 TCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGAT
59 TCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGAT
* *
1977556 TGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTATCGCAAGAAA
124 TGGCATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAA
* * * *
1977621 AGCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATA
189 AGCTTTTTTTTC-ACCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * *
1977686 GTCATACTAATCTCCATTTTTTCGGCATTAGGCACCATAAATGTAGTCTTCTATAAGGATACATG
253 GTCATGCTAATCTCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTCTAAGGATACACG
** *
1977751 ATATTGATGCTTTTTTTTCCCAAGCAAGGCTTTCTTCCCACCAATTTTGTAAAGTCAAAGTTCGT
318 ATATTGATGCTTTCATTTCACAAGCAAGGCTTTCTTCCCA-CAATTTTGTAAAGTCAAAGTTCGT
* * *
1977816 GTCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATGTTGGGATTAGGCACTATA
382 GCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGACACTATA
*
1977881 AAAACATTCTCCTGATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTT
447 AAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTT
1977946 GCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAAT
512 GCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAAT
*
1978011 CTCCATTCTTTTCAACATTGGGATCCAAAAACACATTCTATTCATTAGGATACTTGACCATGATG
577 CTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACTTGACCATGATG
* *
1978076 CTTTGGTGTTGCAAGAAAATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCCTAAA
642 CTTTGGTGTCGCAAGAAAATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAA
*
1978141 TAAGGCAAACATGAATACTCTTACTACTCCTTGTTCCTTTCAGGATTAGGACCATTAAACATAGT
707 TAAGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTCAGGATTAGGACCATTAAACATAGT
*
1978206 TTTCTCTTAAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATT
772 TTTCTCTTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATT
1978271 TTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCAAAACACGGATTCTAGTTTTGATCTTCATTCA
837 TTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCAAAACACGGATTCTAGTTTTGATCTTCATTCA
1978336 TTTTGTGATTAGGCACAATAAAAACATTCTCC-CGTTTAA
902 TTTTGTGATTAGGCACAATAAAAACATTCTCCTC-TTTAA
1978375 GATTAATGTATTGATGATTTTTTTTGCAGTGAAATTTTTTTGCCTCTTTTTCCTTAAAATCAAAG
1 GATTAATGTATTGATGATTTTTTTTGC-GTGAAATTTTTTTGCCTCTTTTTCCTTAAAATCAAAG
*
1978440 TTTATCCCTTAAGTAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGCAT
65 TTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGCAT
1978505 CCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
130 CCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
1978570 TTTTTCACCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGC
195 TTTTTCACCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGC
* * * *
1978635 TAATCTCCATTTTTT-GGGATTGGGCACGATAAATGTAGTCTACTTCTAAGGATATACGATATTG
260 TAATCTCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTC-TCTAAGGATACACGATATTG
1978699 ATGCTTTCATTTCACAAGCAAGGCTTTCTTCCCATCAATTTTGTAAAGTCAAAGTTCGTGCCTTA
324 ATGCTTTCATTTCACAAGCAAGGCTTTCTTCCCA-CAATTTTGTAAAGTCAAAGTTCGTGCCTTA
*
1978764 AATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGACACTTTTAAAAAC
388 AATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGACAC-TATAAAAAC
1978829 ATTCTCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
452 ATTCTCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
1978894 ATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCA
517 ATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCA
* *
1978959 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACCTGACGATGATGCTTTG
582 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACTTGACCATGATGCTTTG
1979024 GTGTCGCAAGAAAATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGA
647 GTGTCGCAAGAAAATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGA
* * *
1979089 CAAACACGAATACTCTTACTACTCCTTGTTCCTTTCAGGATTAGGCCCTTTAAACATAGTTTTCT
712 CAAACATGAATACTCTTACTACTCCTTGTTCCTTTCAGGATTAGGACCATTAAACATAGTTTTCT
* *
1979154 CTTAAGGATACACGATATTGATGCTTTTGTTTCGCAAGAAAGGATTTCTTCCCCTTAATTTTTGT
777 CTTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATTTTTGT
* * * *
1979219 AAAGTCAAAGTTTGTGCCTGAATTGAGCCAAACATGGATTCTAGTTTTGATCTTCATTCATTTTG
842 AAAGTCAAAGTTCGTGCCTCAATTGAGCAAAACACGGATTCTAGTTTTGATCTTCATTCATTTTG
1979284 TGATTAGGCACAATAAAAACATTCTCCTCTTTAA
907 TGATTAGGCACAATAAAAACATTCTCCTCTTTAA
* *
1979318 GATTAATGTATTGATGATTTTTTTTTTTGCCGAGAAATTTTTTTGCCTCCTTTTCCTTAAAATCA
1 GATTAATGTATTGATGA---TTTTTTTTG-CGTGAAATTTTTTTGCCTCTTTTTCCTTAAAATCA
1979383 AAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
62 AAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* *
1979448 CAACCAAAAACACATTCTATTAATTACGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGC
127 CATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGC
* *
1979513 TTTTTTTTCACCATTTTTTATAAAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAATAGTCA
192 TTTTTTTTCACCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * *
1979578 TGCTAATCTCCTTTTTTTGGGGATTAGGCACCATAAATGTAGTCTTCTCGAAAGGATACACGATA
257 TGCTAATCTCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTC-TAAGGATACACGATA
* ** * * * * *
1979643 TTGATGCTTTCATTTCAAAAAAAAGGCTTTCTTCCTACTAATTTTTGTAATGTTAAAGTTTGTAC
321 TTGATGCTTTCATTTCACAAGCAAGGCTTTCTTCCCAC-AA-TTTTGTAAAGTCAAAGTTCGTGC
* ** * * * * * *
1979708 C-CAAGCAAGCCCAATGCGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGTA-AGTATAA
384 CTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAG-ACACTATAA
* * * * * *
1979771 AAACATTCTCCTCAATAAGATTAATTATATTGCTGATTTTCTTTCGCATGAAAATCATTTCTTTG
448 AAACATTCTCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * **
1979836 CCCTATTTTCCTTAAAATCAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATC
513 CCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATC
* * ** * * *
1979901 TCTATTATTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGGTACTTGACTATGGTGC
578 TCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACTTGACCATGATGC
** ** * * ***
1979966 TTTGGTGTCATAAG-AAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCATCTCTTAA
643 TTTGGTGTCGCAAGAAAAT-CTTTT-TTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAA
* * * *
1980030 ATTATACAAACATGAAAACTCGTACTA
706 ATAAGACAAACATGAATACTCTTACTA
1980057 TTGATGATTT
Statistics
Matches: 1558, Mismatches: 108, Indels: 33
0.92 0.06 0.02
Matches are distributed among these distances:
941 24 0.02
942 199 0.13
943 650 0.42
944 8 0.01
945 6 0.00
946 453 0.29
947 189 0.12
948 29 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (940 bp):
GATTAATGTATTGATGATTTTTTTTGCGTGAAATTTTTTTGCCTCTTTTTCCTTAAAATCAAAGT
TTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGCATC
CAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
TTTTCACCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGCT
AATCTCCATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTCTAAGGATACACGATATTGAT
GCTTTCATTTCACAAGCAAGGCTTTCTTCCCACAATTTTGTAAAGTCAAAGTTCGTGCCTTAAAT
AAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGACACTATAAAAACATTC
TCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCT
TTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACTTGACCATGATGCTTTGGTGT
CGCAAGAAAATCTTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGACAAA
CATGAATACTCTTACTACTCCTTGTTCCTTTCAGGATTAGGACCATTAAACATAGTTTTCTCTTA
AGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCCCCCTAATTTTTGTAAAG
TCAAAGTTCGTGCCTCAATTGAGCAAAACACGGATTCTAGTTTTGATCTTCATTCATTTTGTGAT
TAGGCACAATAAAAACATTCTCCTCTTTAA
Found at i:1981944 original size:943 final size:946
Alignment explanation
Indices: 1980062--1982685 Score: 3724
Period size: 943 Copynumber: 2.8 Consensus size: 946
1980052 TACTATTGAT
* * * * *
1980062 GATTTATGATATTGATGACTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
*
1980127 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATT
65 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
1980192 GGGATCCAAAAACACATTCTATTAACTAGGATACATGACAGTGATGCCTTGGTATCGCAAGAAAA
130 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAA
* * * *
1980257 GCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATAG
195 GCTTTTTTTCCT-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
*
1980322 TCATACTAATCTACA-TTTTTCGGCATTAGGCACCATAAATGTAGTCTTCTATAAGGATACATGA
259 TCATACTAATCTACATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTATAAGGATACA-GA
* * *
1980386 TATTGATGCTTTCGTTTC-ACAAGCAAGGCTTTCTTCCCACCAATTTTGTAAAGTCAAAGTTCGT
323 TATTGATGCTTTCGTTTCGA-AAGAAAGGCTTTCTTCCTACAAATTTTGTAAAGTCAAAGTTCGT
* * *
1980450 GCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGGCACTATA
387 GCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATA
* * *
1980515 AAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTT
452 AAAACATTCTTCTCATTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTT
* **
1980580 GCCCTATTTTCCTTAAAATCAATA-TTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAA
517 GCCCTATTTTCCTTAAAATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAA
* * * *
1980644 TCTCCATTATTTTCAAGATTAGGATCCAAAAATACACTCTA--TTCATTAGGATACTTGACGATG
581 TCTCCATTATTTTCAAGATTGGGATCCAAAAACACA-T-TACCTTCATTAGGGTACTTGACTATG
* * ** * * * *
1980707 ATGCTTTGGTGTCGCAAGAAAAT-CCTTT-TTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTC
644 GTGCTTTGGTGTCGCAAG-AAATGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTC
* * * ***
1980770 TTAAATAAGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTCAAGATTAGGCACTTTAAAC
708 TTAAATTAGACAAACATGAAAACTCATACTACTCCCCATTCCTTTCAAGATTAGGCACTTTAAAC
** * * *
1980835 ATAGTTTTCTCATAAGGATACACGATATTGACGCTTTCATTTCGCAAGAAAGGATTTCTTCCCCC
773 ATAGTCGTCCCATAAGCATACACGATATTGACGCGTTCATTTCGCAAGAAAGGATTTCTTCCCCC
* * * *
1980900 TAATTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGATCTTC
838 TAATTTTCGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATACTAGTTTTGATCTTC
* * *
1980965 ATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAC
903 ATTCATTTTGCGATTAGGCACAATAAAAACATTCTCCTCATTAA
* *
1981009 GATTAATG-TATTGATGATTTTTTTTTGCAAT-GAAA-TTTT-TTTGCCTCT-TTTTCCTTAAAA
1 GATTAATGATATTGATGATTTTCTTTCGC-ATGGAAACTTTTCTTTGCC-CTATTTTCCTTAAAA
* *
1981069 TCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGAT
64 TCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGAT
* *
1981134 TGGCATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCTCAAGAAA
129 TGGGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAA
* *
1981199 AGCTTTTTTTGC-T-GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
194 AGCTTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * * * *
1981262 TCATGCTAATCTCCATTTTTTGGGGATTAGGCACCATAAATGCAGTATTCTCGTAAGGATACACG
259 TCATACTAATCTACATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCT-ATAAGGATACA-G
* * *
1981327 ATATTGATGCTTTCATTTCGAAAAAAAGGCTTTCTTCCTACTAAATTTTGTAAAGTCAAAGTTTG
322 ATATTGATGCTTTCGTTTCGAAAGAAAGGCTTTCTTCCTAC-AAATTTTGTAAAGTCAAAGTTCG
* ** * * *
1981392 TACC-CAAGCAAGCCAAATGTGGATTCTAGTATTGATCTTCATTCATTTTGCGATTAGGAACTAT
386 TGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTAT
* * *
1981456 AAAAACGTTCTTCTCATTAAGATTAATGATATTGATGATTTTCTTTCACATAGAAATCTTTTCTT
451 AAAAACATTCTTCTCATTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTT
* *
1981521 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCACAATAA
516 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAA
* *
1981586 TCTCCATTGTTTTCAAGTTTGGGATCCAAAAACACATTACCTTCATTAGGGTACTTGACTATGGT
581 TCTCCATTATTTTCAAGATTGGGATCCAAAAACACATTACCTTCATTAGGGTACTTGACTATGGT
* * *
1981651 GCTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCATTTTTGATAGAATCAAAGCTCATCTCTTA
646 GCTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTA
* *
1981716 AATTAGACAAACATGAAAACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATA
711 AATTAGACAAACATGAAAACTCATACTACTCCCCATTCCTTTCAAGATTAGGCACTTTAAACATA
* * ** ** * *
1981781 GTCGTCCCATTAGCATACATGATATTGGTGCGTTGGTTTCGCAAGAAAGGTTTTTTTCCCACC-A
776 GTCGTCCCATAAGCATACACGATATTGACGCGTTCATTTCGCAAGAAAGGATTTCTTCCC-CCTA
* * *
1981845 ATTTTCGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCTT
840 ATTTTCGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATACTAGTTTTGATCTTCAT
* * *
1981910 TTATTTTGCGATTAGGCACTATAAAAATATTCTCCTCATTAA
905 TCATTTTGCGATTAGGCACAATAAAAACATTCTCCTCATTAA
*
1981952 GATTAATGATATTGGTGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAA-CTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1982017 CAAAGTTCAACCCTTAAATAAGACATGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATT
65 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* *
1982082 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-GATGATGCTTTGATGTCGCAAGAAA
130 GGGATCCAAAAACACATTCTATTAATTAGGATACATGACAG-TGATGCTTTGGTGTCGCAAGAAA
* *
1982146 AG-TTTTTTTCCCTTCGTTTGTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTA
194 AGCTTTTTTT-CCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * *
1982210 GTCATTCTAATCTACATTTTTTCTGGATTAGGCACCATAAATGTAGCCTTCTATAAGGATACAGA
258 GTCATACTAATCTACATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTATAAGGATACAGA
* * * * * *
1982275 TATTAATGC-TTCTGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTGAAGTCAAAATCCG
323 TATTGATGCTTTC-GTTTCGAAAGAAAGGCTTTCTTCCTA-CAAATTTTGTAAAGTCAAAGTTCG
* * *
1982339 TGCCTCAAATAAGCCAAACGTGGAATCTAGTTTTGATCTTCATTCACTTTGTC-ATTAGGCATTA
386 TGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTG-CGATTAGGCACTA
1982403 TAAAAACATTC-TCATCATTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTC
450 TAAAAACATTCTTC-TCATTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTC
* * *
1982467 TTTACCCTATTTTCCTTAAAATCAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAAC
514 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAAC
* * *
1982532 AATCTCTATTATTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGGTACATGACTATG
579 AATCTCCATTATTTTCAAGATTGGGATCCAAAAACACATTACCTTCATTAGGGTACTTGACTATG
*
1982597 GTGCTTTGGTGTCGTAAGAAATGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCT
644 GTGCTTTGGTGTCGCAAGAAATGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCT
*
1982662 TAAATTATACAAACATGAAAACTC
709 TAAATTAGACAAACATGAAAACTC
1982686 GTGCTATTGA
Statistics
Matches: 1488, Mismatches: 162, Indels: 53
0.87 0.10 0.03
Matches are distributed among these distances:
940 61 0.04
941 38 0.03
942 288 0.19
943 414 0.28
944 29 0.02
946 38 0.03
947 205 0.14
948 323 0.22
949 92 0.06
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (946 bp):
GATTAATGATATTGATGATTTTCTTTCGCATGGAAACTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
GGATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAG
CTTTTTTTCCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
ATACTAATCTACATTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCTATAAGGATACAGATAT
TGATGCTTTCGTTTCGAAAGAAAGGCTTTCTTCCTACAAATTTTGTAAAGTCAAAGTTCGTGCCT
CAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAA
CATTCTTCTCATTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCC
TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCC
ATTATTTTCAAGATTGGGATCCAAAAACACATTACCTTCATTAGGGTACTTGACTATGGTGCTTT
GGTGTCGCAAGAAATGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATTA
GACAAACATGAAAACTCATACTACTCCCCATTCCTTTCAAGATTAGGCACTTTAAACATAGTCGT
CCCATAAGCATACACGATATTGACGCGTTCATTTCGCAAGAAAGGATTTCTTCCCCCTAATTTTC
GTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACATGGATACTAGTTTTGATCTTCATTCATTT
TGCGATTAGGCACAATAAAAACATTCTCCTCATTAA
Found at i:1982459 original size:472 final size:470
Alignment explanation
Indices: 1980062--1982680 Score: 3289
Period size: 472 Copynumber: 5.5 Consensus size: 470
1980052 TACTATTGAT
* * * * *
1980062 GATTTATGATATTGATGACTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
1980127 CAAAGTTCATCCCTTAAATAAGACATGCATCGATTCTCGA-AACAATCTCCATTCTTTTCAAGAT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-ATAACAATCTCCATTCTTTTCAAGAT
* * * *
1980191 TGGGATCCAAAAACACATTCTATTAACTAGGATACATGACAGTGATGCCTTGGTATCGCAAGAAA
130 TGGGATCCAAAAACACATTCTATTCATTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAAA
* * * *
1980256 AGCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATA
194 AGC-TTTTTTTC-CTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* *
1980321 GTCATACTAATCTACA-TTTTTC-GGCATTAGGCACCATAAATGTAGTCTTCTATAAGGATACAT
257 GTCATACTAATCTCCATTTTTTCAGG-ATTAGGCACCATAAATGTAGTCTTCTATAAGGATACAC
* *
1980384 GATATTGATGCTTTCGTTTCACAAGCAAGGCTTTCTTCCCACCAA-TTTTGTAAAGTCAAAGTTC
321 GATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTC
* * *
1980448 GTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTTATTTTGGGATTAGGCACTA
386 GTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTT-GCATTAGGCACTA
1980513 TAAAAACATTCTCCTCATTAA
450 TAAAAACATTCTCCTCATTAA
* *
1980534 GATTAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
1980599 CAATA-TTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTATTTTCAAGAT
66 CAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGAT
* * * *
1980663 TAGGATCCAAAAATACACTCTATTCATTAGGATACTTGACGATGATGCTTTGGTGTCGCAAGAAA
130 TGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAA
* * * * * *
1980728 ATCCTTTTTTCCTTCGTTTATGATAGAATCGAAGTTTGGCTCTTAAATAAGACAAACATGAATAC
194 AGCTTTTTTTCC-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * ** ** *
1980793 TCTTACT-A-CTCCTTGTTCCTTTCAAGATTAGGCACTTTAAACATAGTTTTCTCATAAGGATAC
258 TCATACTAATCTCCAT-TT--TTTCAGGATTAGGCACCATAAATGTAGTCTTCT-ATAAGGATAC
* * *
1980856 ACGATATTGACGCTTTCATTTCGCAAGAAAGGATTTCTTCCC-CCTAATTTTTGTAAAGTCAAAG
319 ACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGTCAAAG
* * * *
1980920 TTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCA
383 TTCGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTG-CATTAGGCA
* * *
1980985 CAATAAAAACATTCTCCTCTTTAC
447 CTATAAAAACATTCTCCTCATTAA
* *
1981009 GATTAATG-TATTGATGATTTTTTTTTGCAAT-GAAA--TTTT-TTTGCCTCT-TTTTCCTTAAA
1 GATTAATGATATTGATGATTTTCTTTCGC-ATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAA
* *
1981068 ATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
64 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGA
* * *
1981133 TTGGCATCCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGGTGTCTCAAGAA
129 TTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACA-TGATGCTTTGGTGTCGCAAGAA
* *
1981198 AAGCTTTTTTTGCT-GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
193 AAGCTTTTTTTCCTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* ** * * *
1981262 TCATGCTAATCTCCATTTTTTGGGGATTAGGCACCATAAATGCAGTATTCTCGTAAGGATACACG
258 TCATACTAATCTCCATTTTTTCAGGATTAGGCACCATAAATGTAGTCTTCT-ATAAGGATACACG
* * * * * * *
1981327 ATATTGATGCTTTCATTTCGAAAAAAAGGCTTTCTTCCTACTAAATTTTGTAAAGTCAAAGTTTG
322 ATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCG
* ** * * *
1981392 TACC-CAAGCAAGCCAAATGTGGATTCTAGTATTGATCTTCATTCATTTTGCGATTAGGAACTAT
387 TGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGC-ATTAGGCACTAT
* *
1981456 AAAAACGTTCTTCTCATTAA
451 AAAAACATTCTCCTCATTAA
* *
1981476 GATTAATGATATTGATGATTTTCTTTCACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
1981541 CAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCACAATAATCTCCATTGTTTTCAAGTTT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATT
* * * *
1981606 GGGATCCAAAAACACATTAC-CTTCATTAGGGTACTTGACTATGGTGCTTTGGTGTCGCAAGAAA
131 GGGATCCAAAAACACATT-CTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAA
* * * * * ** * *
1981670 TGCATTTCTTTCCACCATTTTTGATAGAATCAAAGCTCATCTCTTAAATTAGACAAACATGAAAA
194 AGC-TTTTTTTCC-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * ** ** * * * *
1981735 CTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCGTCCCATTAGCATACA
257 GTCATACTAATCTCCATT-TTTTCAGGATTAGGCACCATAAATGTAGTC-TTCTATAAGGATACA
* * * * * * * * *
1981800 TGATATTGGTGCGTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTCGTAAGGTCAAAATT
320 CGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTT
* * * *
1981865 CGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCTTTTATTTTGCGATTAGGCACT
385 CGTGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGC-ATTAGGCACT
*
1981930 ATAAAAATATTCTCCTCATTAA
449 ATAAAAACATTCTCCTCATTAA
*
1981952 GATTAATGATATTGGTGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
1982017 CAAAGTTCAACCCTTAAATAAGACATGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATT
*
1982082 GGGATCCAAAAACACATTCTATTCATTAGGATACATGACGATGATGCTTTGATGTCGCAAGAAAA
131 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* *
1982147 G-TTTTTTTCCCTTCGTTTGTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAG
195 GCTTTTTTT-CC-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * *
1982211 TCATTCTAATCTACATTTTTTCTGGATTAGGCACCATAAATGTAGCCTTCTATAAGGATACA-GA
258 TCATACTAATCTCCATTTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTATAAGGATACACGA
* * * * *
1982275 TATTAATGC-TTCTGTTTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTGAAGTCAAAATCCG
323 TATTGATGCTTTC-GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCG
* * *
1982339 TGCCTCAAATAAGCCAAACGTGGAATCTAGTTTTGATCTTCATTCACTTTGTCATTAGGCATTAT
387 TGCCTCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTG-CATTAGGCACTAT
*
1982404 AAAAACATTCTCATCATTAA
451 AAAAACATTCTCCTCATTAA
*
1982424 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
1982489 CAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATT
** * * * *
1982554 GGGATCCAAAAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGTAAGAAAT
131 GGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-ATGATGCTTTGGTGTCGCAAGAAAA
* * * * *
1982619 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATTATACAAACATGAA
195 GC-TTTTTTTCC-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
1982681 AACTCGTGCT
Statistics
Matches: 1838, Mismatches: 268, Indels: 81
0.84 0.12 0.04
Matches are distributed among these distances:
467 76 0.04
468 116 0.06
469 54 0.03
470 13 0.01
471 342 0.19
472 495 0.27
473 86 0.05
474 163 0.09
475 246 0.13
476 247 0.13
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (470 bp):
GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATT
GGGATCCAAAAACACATTCTATTCATTAGGATACATGACATGATGCTTTGGTGTCGCAAGAAAAG
CTTTTTTTCCTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
TACTAATCTCCATTTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTATAAGGATACACGATAT
TGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCC
TCAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGCATTAGGCACTATAAAAA
CATTCTCCTCATTAA
Found at i:1982912 original size:273 final size:273
Alignment explanation
Indices: 1982424--1982953 Score: 756
Period size: 273 Copynumber: 1.9 Consensus size: 273
1982414 TCATCATTAA
*
1982424 GATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
* * *
1982489 CAAAGTACATCCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCTATTATTTTCAAGATT
66 CAAAGTACATCCATTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATT
* * * * * ** *
1982554 GGGATCCAAAAACACATTCCCTTCATTAGGGTACATGACTATGGTGCTTTGGTGTCGTAAGAAAT
131 GGGATCCAAAAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCACAAGAAAA
* * *
1982619 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATTATACAAACATGAAAAC
196 GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTCAAATAAGACAAACATGAAAAC
1982684 TCGTGCTATTGAT
261 TCGTGCTATTGAT
* * *
1982697 GATTAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
1 GATTAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
* * * ** *
1982762 CAAAGTTCATCCATTAAATAAGACATGCCTCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
66 CAAAGTACATCCATTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATT
*
1982827 GGGATCCAAAAACACATTCTATTAATTAGGATACATGAC-AGTGATGCTTTGGTATCACAAGAAA
131 GGGATCCAAAAACACATTCCATTAATTAGGATACATGACTA-TGATGCTTTGGTATCACAAGAAA
* * * * * * *
1982891 AGCTTTTTTTTCTATCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAA
195 AGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTCAAATAAGACAAACATGAA
1982954 TAGTCATACT
Statistics
Matches: 224, Mismatches: 32, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
272 1 0.00
273 223 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (273 bp):
GATTAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
CAAAGTACATCCATTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTATTTTCAAGATT
GGGATCCAAAAACACATTCCATTAATTAGGATACATGACTATGATGCTTTGGTATCACAAGAAAA
GCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTCAAATAAGACAAACATGAAAAC
TCGTGCTATTGAT
Found at i:1983485 original size:60 final size:60
Alignment explanation
Indices: 1983412--1983533 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
1983402 CTCTTAAGTA
1983412 AGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACAT
1 AGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACAT
1983472 AGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACAT
1 AGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACAT
1983532 AG
1 AG
1983534 TTTTCTCTTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (60 bp):
AGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTTAGGATTAGGCACTTTAAACAT
Found at i:1985287 original size:476 final size:476
Alignment explanation
Indices: 1984383--1989943 Score: 7119
Period size: 476 Copynumber: 11.7 Consensus size: 476
1984373 TTCCATCGTT
* * *** ** * *
1984383 TTTGTCTCTTAAATAAGATAAACATGAATACTCCGACTATTCCGTAATCTTTTCAGGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * * * * * * *
1984448 TTTTAAGCATAGGCTTCTCATAAGGATAGACGATATTGATGCTTTCATTTCGCAAGAAAGGATTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* ** * * * *
1984513 CTTCCCA-CCAATTTTTGTAAAGTCAAAGTTTGTGTCC-CAAATGAGCCAAACGTGTATACTAGT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTG-CCTCAAATGAGCCAAACGTGGATACTAGT
* * * * *
1984576 TTTGATC-TCTATTCATTTTGTGATTAGGCACTATAAAAATATGCTCTTCTTTAAGATTCATGGT
195 TTTGATCTTC-ATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGAT
* ** *
1984640 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTTTTGAAATCAAAGTTCAT
259 ATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
** * **
1984705 CCCTTAAATAAGATAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCTTGATTGGGATCCAAA
324 CATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* * *
1984770 AACACATTCTATACATTAGGATACATGATAGTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTTTC
389 AACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTC
* *
1984835 CACCGTTTTTGATAAAATTAAAG
454 CACCGTTTTTGATAGAATCAAAG
*
1984858 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTATTTTCAAGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * * * *
1984923 CTTTAAACAAAGTTTTTTCATTAGGATATATGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* *
1984988 TTTCCCATGAAATTTTTGTATGGTCAAAATTCGTGCCTCAAATGAGCCAAATGTGGATACTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* *
1985053 TTTATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATAT
196 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATAT
* * *
1985118 TGATGACTTTCTTTTGCATTGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAACTTCATCA
261 TGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCA
* ** * *
1985183 TTTAAAAAAGACAAGTGTCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAAG
326 TTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
* * * * *
1985248 CACATTTTATTCATTAGGATATATGACAATAATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTCCA
391 CACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCA
1985313 CCGTTTTTGATAGAATCAAAG
456 CCGTTTTTGATAGAATCAAAG
* * *
1985334 TTTGTCTCTTAAATTACACAAACATGAATGCTTATCCTATTCCCCATTCTTTTCAAGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * * *
1985399 CTTTAAATAAAGTCTTCTCACTAGGATATACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* * * * *
1985464 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCATTCCTAAAATGAGCCAAACGTGAACACTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* * *
1985529 TTGATCTTCATTCATTTTGTGATTAGGCACTA-AAAGAATATTCTCTTCTTTAAGATTAATGGTA
196 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAA-AACATTCTCCTCTTTAAGATTAATGATA
* * * *
1985593 TTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCATATTTTCTTTAAAATCAAAGTTCATC
260 TTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * *
1985658 -CTTAAATAAGAAAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAA
325 ATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * *
1985722 ACACATTCTATTCAATAGGATACATGAC-GATGATGCTTCGGTGTCGCAAGAAAAGCTTTTTTCC
390 ACACATTCTATTCATTAGGATACATGACAG-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTC
** *
1985786 CTTCGTTTATGATAGAATCAAAG
454 CACCGTTTTTGATAGAATCAAAG
* * *** * *
1985809 TTTGTCTCTTAAATAAGACAAACATGAATACTCT-TACTACTCCTTGTTCCTTTCAGGATTAGGC
1 TTTGTCTCTTAAATTAGACAAACATGAATACT-TATACTATTCCCCATTCTTTTCAAGATTAGGC
* * * * *
1985873 ACTTTGAACATAGTTTTCTC-TTAAGGTTACACGATATTGATGCTTTCGTTTCGCAAGAAAGGAT
65 ACTTTAAACAAAGTCTTCTCATT-AGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCT
* *** * * * * * *
1985937 TTCTTCCC-CCCAATTTTTGTAAAGTCAAAGTTCGTGCCCCAATTGAGCCAAACATGGATTCTAG
129 TTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAG
* *
1986001 TTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCACCTCTTTAAGATTAATG-T
194 TTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGAT
* * * *
1986065 ATTGATGATTTTCTTTTGTAGTGAAAT-TTTT-TTTGCCTCT-TTTTCCTTAAAGTCAAAGTTTA
259 ATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCA
** * * *
1986127 TCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGCATTCAA
323 TCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * *
1986192 AAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGCTGTCACAAGAAAAGCATTTTTT
388 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTT
** *
1986257 CTGCCGTTTTTGATAAAATCAAAG
453 CCACCGTTTTTGATAGAATCAAAG
* * *** * * * **
1986281 TTTATCTCTTAAATAAGACAAACATGAATAGACATGCTAATCTCCATT-TTTTCGGGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
** *** * * * * * *
1986345 CCATAAATGTAGTCTTCTCGTAAGGATACACGATATTGAAGCTTTTGTTTCGTAAAAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* * ** * * * * *** * * *
1986410 CTTCCTA-CCAATTTTTGTAAAGTCAAAGTTTGTACC-CAAGCAAG-GAAATGTGGATTCTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* * * **
1986472 TTAATCTTCATTCATTTTGCGATTAGGAACTATAAAAACATTCTCCTCAATAAGATTAATGATAT
196 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATAT
* * *
1986537 TGGTGATTTTCTTTCGCA-TGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATC
261 TGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
** * * *
1986601 CCTTAAATAAGACAAGCTTCGATTCTCGTAACAATCTCCATTCCTTTCAAGATTAGGATCCAAAA
325 ATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * * * ** * *
1986666 GCACATTCTATTCATTAGGATGCATGACTGTGATGCTTTGGGGTCATAAGAAAAGCTCTTTTTCT
390 ACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCC
* *
1986731 ATCGTTTTTGATAAAATCAAAG
455 ACCGTTTTTGATAGAATCAAAG
* * ** ** *
1986753 TTTGCCTCTTAAA-TAAAGCAAACATGAATACTCCTACTATTCCATATTCTTTTCAGGATTAGGC
1 TTTGTCTCTTAAATTAGA-CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGC
* * * * * * *
1986817 ATTTTAAGCATAGGCTTCTTATAAGGATACACGATATTGATGCTTTCATTTCGCAAGAAAGGCTT
65 ACTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTT
1986882 TTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGT
130 TTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGT
* *
1986947 TTTTATCTTCATTCATTTTGTGATTAGGCACTGA-AAAAACATTCTCCTCCTTAAGATTAATGAT
195 TTTGATCTTCATTCATTTTGTGATTAGGCACT-ATAAAAACATTCTCCTCTTTAAGATTAATGAT
* *
1987011 ATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAACTTCAT
259 ATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* *
1987076 CATTTAAAAAAGACAAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAA
324 CATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* * * * * *
1987141 AGCACATTTTATTCATTAGGATATATGACAATAATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTC
389 AACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTC
1987206 CACCGTTTTTGATAGAATCAAAG
454 CACCGTTTTTGATAGAATCAAAG
* * * *
1987229 CTTGCCTCTTAAATTACACAAAGATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * * *
1987294 CTTTAAATAAAGTCTTCTCACTAGGATATACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* * * * *
1987359 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCATTCCTAAAATGAGCTAAACGTGAATACTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* * * *
1987424 TTGATCTTCGTTCATTTTGCGATTAGGCACTATAAAAATATTCTCTTCTTTAAGATTAATGATAT
196 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATAT
* * * * *
1987489 TGATGATTTTCTTTTCCATGGAAATCTTTTTTTTGCCCTATTTTCTTTAAAATCAAACTTCATCA
261 TGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCA
* *
1987554 TTTAAA-AGAGACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAA
326 TTTAAATA-AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * * * * * *
1987618 GCACATTTTATTCCTTAGGATACATGACAATGATGGTTTGGTGTCGTAAGAAAAGCTTTTTCTCC
390 ACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCC
1987683 ACCGTTTTTGATAGAATCAAAG
455 ACCGTTTTTGATAGAATCAAAG
*
1987705 TTTGTCTCTTAAATTAGATAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * ** * *
1987770 CTTTAAACAAAGTCTTCTCACTAAGATATGCGATATTGGTGCTTTCTTTTCGCAAGAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
*
1987835 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTTCCTCAAATGAGCCAAACGTGGATACTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* * * *
1987900 TTGGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCCCCTCTTCAAGACTATTGATA
196 TT-GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATA
* * *
1987965 TTGATGATTTTCTTTTCCATTAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAAGTTCATC
260 TTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * *
1988030 CTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGACTGGGATCCAAAA
325 ATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * * * *
1988095 ACACATTCTATTCCTTAGGATTCATGATAGTGATGCTATGCTGTCGCAAGAAAAGCTTTTTTTCC
390 ACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCC
*
1988160 TCCGTTTTTGATAGAATCAAAG
455 ACCGTTTTTGATAGAATCAAAG
* * *
1988182 TTTGTGTCTTAAATTAGACAAACATGAATACTTATACTATTCTCCATTCTTTTCAGGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * * *
1988247 CTTTAAACAAAGTCTTCTCACTAGGGTACACGACATTCATGCTTTCGTTTCGCAAGAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
1988312 TTTCCCATGAAA-TTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* * *
1988376 TTGATCTTCATTCATTTTGTGGTTAGGCACTATAAAAACATTCTCC-CTTTTAAGTTTACTGATA
196 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC-TTTAAGATTAATGATA
*
1988440 TTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATC
260 TTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* *
1988505 ATTTAAATAAGACAAGCATCGATTCACGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAA
325 ATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
*
1988570 ACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTCC
390 ACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCC
* *
1988635 ACCGTTTTTGATAAAATCAATG
455 ACCGTTTTTGATAGAATCAAAG
* *
1988657 TTTGTCTCTTAAATTAGACAAACAAGAATACTTATACTATTCCCCATTATTTTCAAGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
* * * * * *
1988722 CTTCAAACAAAGTCTTTTCACTAGGATATACGATATTGGTGCTTTCGTTTCGCAGGAAAGGCTTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
* *
1988787 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCTTGCCTCAAATGAGCCAAACATGGATACTAGTT
131 TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
* * * * * *
1988852 TTGATCATCATTCATTCTGTGATTAGGCACTATAAAAACAATCTCCTTTTTAAGATTACTGAAAT
196 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATAT
* *
1988917 TGATGATTTTCTCTTGCATTGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCA
261 TGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCA
* * *
1988982 TTTAAATAAGACAAGCATCAAATCTCGTAACAATCTCCATTCTTTTCAAGATTCGGATCCAAAAA
326 TTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
* * * * *
1989047 TACATTTTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAA-C-CTTTTTCCG
391 CACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCA
* *
1989110 CCGTTATTGATAAAATCAAAG
456 CCGTTTTTGATAGAATCAAAG
* * * * * * * ***
1989131 TTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCTCCATTTTTTTTGGGATTAGGCA
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
** *** * *
1989196 CAATAAATGTAGCCTTCT-A--AGGATAC-CGATATTAATGC-TTCTGTTTCGCAAGAAAGGCTT
66 CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTC-GTTTCGCAAGAAAGGCTT
* * ** * *
1989256 TCTTCCTA-CCAATTTTTGTGAA-GTCAAAATTCGTGCCTCAAATAAGCCAAACGCGGA-ATCTA
130 TTTTCCCATGAAATTTTTGT-AAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATA-CTA
* * *
1989318 GTTTTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCCCCTCATTAAGATTAATGA
193 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* ** * *
1989383 TATTGACGATTTTCTTTCACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTAT-
258 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TC
** * *** *
1989447 ATCCCTTAATTAAGACAAGCATCGATTCTTACAACAATCTCCATTCTTTTTAAGATTGGGATCCA
322 ATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
** * ** * *
1989512 AAAACACATTCCCTTCAATAGGATACATGACTTTGGTGCTTTGGTGTCGCAAGAAATGCTTTTCT
387 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-T
*
1989577 TTCCATCGTTTTTGATAGAATCAAAG
451 TTCCACCGTTTTTGATAGAATCAAAG
* * * *** * *
1989603 TTTATCTCTTAAATCAGACAAACATGAAAACGCGTACTATTCCCCTATTCATTTCAAGATTTGGC
1 TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCC-ATTCTTTTCAAGATTAGGC
* * *
1989668 ACTTTAAA-AATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTT
65 ACTTTAAACAA-AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGG-C
** * * * * * *
1989732 TTTTTTCCCA-CCAATTTTCGTAAGGTCGAAATTCGTGCCTCAAATGTGCTAGACATGGATACTA
128 TTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTA
* ** *
1989796 GTTTTGATCTTCATTCATTTTGTGATTAGGCAC-ATAAAAACATTTTATTCTTTAAGATTAACGA
193 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * * * * *
1989860 TATTGATGATTTTCTTTTGTATTAAAATCTTTTCCTTGCCCCATTTTCCTTCAAATCGAAGTTCA
258 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
** *
1989925 TCCCTTAAATAAGAAAAGC
323 TCATTTAAATAAGACAAGC
1989944 TTTTTTTCTA
Statistics
Matches: 4442, Mismatches: 592, Indels: 102
0.86 0.12 0.02
Matches are distributed among these distances:
468 1 0.00
469 330 0.07
470 64 0.01
471 139 0.03
472 429 0.10
473 123 0.03
474 213 0.05
475 757 0.17
476 1795 0.40
477 506 0.11
478 84 0.02
479 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA
CTTTAAACAAAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTT
TTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTT
TTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATAT
TGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCA
TTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
CACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCA
CCGTTTTTGATAGAATCAAAG
Found at i:1987603 original size:952 final size:951
Alignment explanation
Indices: 1983472--1989943 Score: 7984
Period size: 952 Copynumber: 6.8 Consensus size: 951
1983462 CTTTAAACAT
* * *** * *
1983472 AGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTT-AGGATTAGGCACTTTAAACATAGTT
1 AGACAAACATGAATACTCATACTATTCCCCATT-CTTTTCAGGATTAGGCACTTTAAATATAGTC
* * *
1983536 TTCTC-TTAAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGATTTCTTCACC--CTAA
65 TTCTCACT-AGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTC-CCATCAAA
* * * * *
1983598 TTTTTGTAAAGTCAAAGTTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTTTTGATCTTCATT
128 TTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTCATT
*
1983663 CATTTTGTGATTAGGCACAATAAAAACATTCTCCTCTTTAAGATTAATG-TATTGATGATTTT-T
193 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCT
*** *
1983726 TTTTTGTAGTGAAA--TTTT-TTTGCCTCT-TTTTCCTTAAAATCAAAGTTTATCCCTTAAATAA
258 TTTCCAT-G-GAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
1983787 GACAGGCATCGATTCTCGTAACAATCTCCATT-TTTTCAAGATTGGCATCCAAAAACATATTCTA
320 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTA
* *** *
1983851 TTAATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTGCCGTTTTTTA
385 TTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTCCACCGTTTTTGA
* * * * *
1983916 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGCTAATCTCCATT-TTTTG
450 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTC
** ** ** ** * *
1983980 GGGATTAGGCACGATAAATGTAGTCTTCTCGTAAGGATACACGATATTGATGCTTTCGTTTCGAA
515 AAGATTAGGCACTTTAAACATAGTCTTCTTATAAGGATACACGATATTGGTGCTTTCGTTTCGCA
* ** * * * * * *** *
1984045 AAAAAGGCTTTTTTCTTACT--AATTTTTGCAAAGTC-AAGTTTGTACC-CAAGCAAGCCAAATG
580 AGAAAGGCTTTTTTCCCA-TGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACG
* * * * * * **
1984106 TGGATTCAAGTTTTGATTTTCATTCATTTTGCGATTAGGAAGTATAAAAACATTCTCCTCAATAA
644 TGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAA
* * * *
1984171 GATTAATTATATTGGTGATTTTC-TTT-CACGTGAAAATCTTTTCTTTACCCTATTTTCCTTAAA
709 GATTAATGATATTGATGATTTTCTTTTGCA-TTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAA
**
1984234 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
772 ATCAAAGTTCATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
* * * * *
1984299 TTAGAATCCAAAAACACATTCTATTCGTTAGGATACGTGACAGTGATGCTTTGGTGTCATAAGAA
837 TTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAA
*
1984364 AAGCTTTTTTTCCA------TCG-T----T-----TTTGTCTCTTAAATA
902 AAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* ** ** * * ** *
1984398 AGATAAACATGAATACTCCGACTATTCCGTAATCTTTTCAGGATTAGGCATTTTAAGCATAGGCT
1 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
* * * *
1984463 TCTCA-TAAGGATAGACGATATTGATGCTTTCATTTCGCAAGAAAGGATTTCTTCCCA-CCAATT
66 TCTCACT-AGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAAATT
* * *
1984526 TTTGTAAAGTCAAAGTTTGTGTCC-CAAATGAGCCAAACGTGTATACTAGTTTTGATC-TCTATT
130 TTTGTAAAGTCAAAATTCGTG-CCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTC-ATT
* * * * *
1984589 CATTTTGTGATTAGGCACTATAAAAATATGCTCTTCTTTAAGATTCATGGTATTGATGATTTTCT
193 CATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCT
* ** * *
1984654 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTTTTTGAAATCAAAGTTCATCCCTTAAATAAGAT
258 TTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
** *
1984719 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCTTGATTGGGATCCAAAAACACATTCTATAC
323 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTC
* *
1984784 ATTAGGATACATGATAGTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATA
388 ATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTCCACCGTTTTTGATA
* * * *
1984849 AAATTAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTTATACTATTCCCCATTATTTTCAA
452 AAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAA
* * * * *
1984914 GATTAGGCACTTTAAACAAAGT-TTTTTCATTAGGATATATGATATTGGTGCTTTCGTTTCGCAA
517 GATTAGGCACTTTAAACATAGTCTTCTT-ATAAGGATACACGATATTGGTGCTTTCGTTTCGCAA
* *
1984978 GAAAGGCTTTTTTCCCATGAAATTTTTGTATGGTCAAAATTCGTGCCTCAAATGAGCCAAATGTG
581 GAAAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTG
* *
1985043 GATACTAGTTTTTATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGA
646 GATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGA
* *
1985108 TTAATGATATTGATGACTTTCTTTTGCATTGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
711 TTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** *
1985173 AACTTCATCATTTAAAAAAGACAAGTGTCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGG
776 AAGTTCATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * *
1985238 GATCCAAAAGCACATTTTATTCATTAGGATATATGACAATAATGCTTTGGTGTCGTAAGAAAAGC
841 GATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAGC
*
1985303 TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATT
906 TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
1985349 ACACAAACATGAATGCTTATCCTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAATAAAGTCT
1 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
* * * *
1985414 TCTCACTAGGATATACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAATTT
66 TCTCACTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAAATTT
* * * * *
1985479 TTGTAAGGTCAAAATTCATTCCTAAAATGAGCCAAACGTGAACACTAGTTTTGATCTTCATTCAT
131 TTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTCATTCAT
* * *
1985544 TTTGTGATTAGGCACTA-AAAGAATATTCTCTTCTTTAAGATTAATGGTATTGATGATTTTCTTT
196 TTTGTGATTAGGCACTATAAA-AACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTT
* * * * *
1985608 TGCGTGGAAATCTTTTCTTTGCCATATTTTCTTTAAAATCAAAGTTCAT-CCTTAAATAAGAAAA
260 TCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
1985672 GCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAA
325 GCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCAT
* *
1985737 TAGGATACATGAC-GATGATGCTTCGGTGTCGCAAGAAAAGCTTTTTTCC-CTTCGTTTATGATA
390 TAGGATACATGACAG-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTCCAC--CGTTTTTGATA
* * * *** * *
1985800 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCTTACTACTCCTTGTTCCTTTCAG
452 AAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAA
* * * *
1985865 GATTAGGCACTTTGAACATAGTTTTCTCT-TAAGGTTACACGATATTGATGCTTTCGTTTCGCAA
517 GATTAGGCACTTTAAACATAGTCTTCT-TATAAGGATACACGATATTGGTGCTTTCGTTTCGCAA
* * *** * * * * *
1985929 GAAAGGATTTCTTCCC-CCCAATTTTTGTAAAGTCAAAGTTCGTGCCCCAATTGAGCCAAACATG
581 GAAAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTG
* * *
1985993 GATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCACCTCTTTAAGA
646 GATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGA
* * *
1986058 TTAATG-TATTGATGATTTTCTTTTGTAGTGAAAT-TTTT-TTTGCCTCT-TTTTCCTTAAAGTC
711 TTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATC
* ** *
1986119 AAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTG
775 AAAGTTCATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
* * * * **
1986184 GCATTCAAAAACACATTCTATTAATTAGGATACATGACAGTGATGCTTTGCTGTCACAAGAAAAG
840 GGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAG
* ** * *
1986249 CATTTTTTCTGCCGTTTTTGATAAAATCAAAGTTTATCTCTTAAATA
905 CTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * * * ** *
1986296 AGACAAACATGAATAGACATGCTAATCTCCATT-TTTTCGGGATTAGGCACCATAAATGTAGTCT
1 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
* * * * * * *
1986360 TCTC-GTAAGGATACACGATATTGAAGCTTTTGTTTCGTAAAAAAGGCTTTCTTCCTA-CCAATT
66 TCTCACT-AGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAAATT
* * * *** * * * * *
1986423 TTTGTAAAGTCAAAGTTTGTACC-CAAGCAAG-GAAATGTGGATTCTAGTTTTAATCTTCATTCA
130 TTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTCATTCA
* * ** *
1986486 TTTTGCGATTAGGAACTATAAAAACATTCTCCTCAATAAGATTAATGATATTGGTGATTTTC-TT
195 TTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTT
* *
1986550 TCGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
260 TC-CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * *
1986615 AGCTTCGATTCTCGTAACAATCTCCATTCCTTTCAAGATTAGGATCCAAAAGCACATTCTATTCA
324 AGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCA
* * * ** * *
1986680 TTAGGATGCATGACTGTGATGCTTTGGGGTCATAAGAAAAGCTCTTTTTCTATCGTTTTTGATAA
389 TTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTTTCCACCGTTTTTGATAA
* * ** *
1986745 AATCAAAGTTTGCCTCTTAAATAA-AGCAAACATGAATACTCCTACTATTCCATATTCTTTTCAG
453 AATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATACTCATACTATTCCCCATTCTTTTCAA
* * * * *
1986809 GATTAGGCATTTTAAGCATAGGCTTCTTATAAGGATACACGATATTGATGCTTTCATTTCGCAAG
517 GATTAGGCACTTTAAACATAGTCTTCTTATAAGGATACACGATATTGGTGCTTTCGTTTCGCAAG
1986874 AAAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGG
582 AAAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGG
* *
1986939 ATACTAGTTTTTATCTTCATTCATTTTGTGATTAGGCACTGA-AAAAACATTCTCCTCCTTAAGA
647 ATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACT-ATAAAAACATTCTCCTCTTTAAGA
*
1987003 TTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
711 TTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
1987068 AACTTCATCATTTAAAAAAGACAAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGG
776 AAGTTCATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * *
1987133 GATCCAAAAGCACATTTTATTCATTAGGATATATGACAATAATGCTTTGGTGTCGTAAGAAAAGC
841 GATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAGC
* * *
1987198 TTTTTTTCCACCGTTTTTGATAGAATCAAAGCTTGCCTCTTAAATT
906 TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
1987244 ACACAAAGATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAATAAAGTCT
1 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
* * * *
1987309 TCTCACTAGGATATACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAATTT
66 TCTCACTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAAATTT
* * * * * *
1987374 TTGTAAGGTCAAAATTCATTCCTAAAATGAGCTAAACGTGAATACTAGTTTTGATCTTCGTTCAT
131 TTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTCATTCAT
* * *
1987439 TTTGCGATTAGGCACTATAAAAATATTCTCTTCTTTAAGATTAATGATATTGATGATTTTCTTTT
196 TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
* * * **
1987504 CCATGGAAATCTTTTTTTTGCCCTATTTTCTTTAAAATCAAACTTCATCATTTAAA-AGAGACAA
261 CCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAA
* * * * *
1987568 GTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAGCACATTTTATTCCT
325 GCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCAT
* * * *
1987633 TAGGATACATGACAATGATGGTTTGGTGTCGTAAGAAAAGCTTTTTCTCCACCGTTTTTGATAGA
390 TAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT-TCCACCGTTTTTGATAAA
* * *
1987698 ATCAAAGTTTGTCTCTTAAATTAGATAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGA
454 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGA
* * ** *
1987763 TTAGGCACTTTAAACAAAGTCTTCTCACTAA-GATATGCGATATTGGTGCTTTCTTTTCGCAAGA
519 TTAGGCACTTTAAACATAGTCTTCTTA-TAAGGATACACGATATTGGTGCTTTCGTTTCGCAAGA
*
1987827 AAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTTCCTCAAATGAGCCAAACGTGGA
583 AAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGA
* * *
1987892 TACTAGTTTTGGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCCCCTCTTCAAGAC
648 TACTAGTTTT-GATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGAT
* * * *
1987957 TATTGATATTGATGATTTTCTTTTCCATTAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAA
712 TAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
1988022 AGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGACTGGG
777 AGTTCATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGG
* * * * * *
1988087 ATCCAAAAACACATTCTATTCCTTAGGATTCATGATAGTGATGCTATGCTGTCGCAAGAAAAGCT
842 ATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAGCT
* * *
1988152 TTTTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAATT
907 TTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
1988197 AGACAAACATGAATACTTATACTATTCTCCATTCTTTTCAGGATTAGGCACTTTAAACAAAGTCT
1 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
* * * * *
1988262 TCTCACTAGGGTACACGACATTCATGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAA-TT
66 TCTCACTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAAATTT
* *
1988326 TTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
131 TTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTCATTCAT
* * *
1988391 TTTGTGGTTAGGCACTATAAAAACATTCTCC-CTTTTAAGTTTACTGATATTGATGATTTTCTTT
196 TTTGTGATTAGGCACTATAAAAACATTCTCCTC-TTTAAGATTAATGATATTGATGATTTTCTTT
* * * **
1988455 TGCATTGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCATTTAAATAAGACAA
260 TCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
1988520 GCATCGATTCACGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
325 GCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCAT
*
1988585 TAGGATACATGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTCCACCGTTTTTGATAAA
390 TAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTCCACCGTTTTTGATAAA
* * * * *
1988650 ATCAATGTTTGTCTCTTAAATTAGACAAACAAGAATACTTATACTATTCCCCATTATTTTCAAGA
454 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGA
* * * *
1988715 TTAGGCACTTCAAACAAAGTCTT-TTCACT-AGGATATACGATATTGGTGCTTTCGTTTCGCAGG
519 TTAGGCACTTTAAACATAGTCTTCTT-A-TAAGGATACACGATATTGGTGCTTTCGTTTCGCAAG
* *
1988778 AAAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCTTGCCTCAAATGAGCCAAACATGG
582 AAAGGCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGG
* * * *
1988843 ATACTAGTTTTGATCATCATTCATTCTGTGATTAGGCACTATAAAAACAATCTCCTTTTTAAGAT
647 ATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGAT
* * * *
1988908 TACTGAAATTGATGATTTTCTCTTGCATTGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAA
712 TAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
1988973 AGTTCATCATTTAAATAAGACAAGCATCAAATCTCGTAACAATCTCCATTCTTTTCAAGATTCGG
777 AGTTCATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGG
* *
1989038 ATCCAAAAATACATTTTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAA-C-
842 ATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAGCT
* * * * *
1989101 CTTTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCACTTAAATA
907 TTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * ** ** * *
1989146 AGACAAACATGAATAGTCATACTAATCTCCATTTTTTTTGGGATTAGGCACAATAAATGTAGCCT
1 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
* * *
1989211 TCT-A--AGGATAC-CGATATTAATGC-TTCTGTTTCGCAAGAAAGGCTTTCTTCCTA-CCAATT
66 TCTCACTAGGATACACGATATTGATGCTTTC-GTTTCGCAAGAAAGGCTTTCTTCCCATCAAATT
* * *
1989270 TTTGTGAAGTCAAAATTCGTGCCTCAAATAAGCCAAACGCGGAAT-CTAGTTTTGATCTTCATTC
130 TTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACG-TGAATACTAGTTTTGATCTTCATTC
* * * *
1989334 ACTTTGTGATTAGGCACTATAAAAACATTCCCCTCATTAAGATTAATGATATTGACGATTTTC-T
194 ATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTT
* *
1989398 TTCACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTAT-ATCCCTTAATTAAGA
259 TTC-CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATCCCTTAAATAAGA
*** * **
1989462 CAAGCATCGATTCTTACAACAATCTCCATTCTTTTTAAGATTGGGATCCAAAAACACATTCCCTT
322 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATT
* ** * * *
1989527 CAATAGGATACATGACTTTGGTGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCATCGTTTTTGA
387 CATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGC-TTT-TTTCCACCGTTTTTGA
* * * * * * *
1989592 TAGAATCAAAGTTTATCTCTTAAATCAGACAAACATGAAAACGCGTACTATTCCCCTATTCATTT
450 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCC-ATTCTTTT
* * * * *
1989657 CAAGATTTGGCACTTTAAAAATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGC
514 CAAGATTAGGCACTTTAAACATAGTCTTCTTATAAGGATACACGATATTGGTGCTTTCGTTTCGC
* ** * * * * *
1989722 AAGAAAGGTTTTTTTTCCCA-CCAATTTTCGTAAGGTCGAAATTCGTGCCTCAAATGTGCTAGAC
579 AAGAAAGG-CTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAAC
* * **
1989786 ATGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCAC-ATAAAAACATTTTATTCTTTA
643 GTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTA
* * * * * *
1989850 AGATTAACGATATTGATGATTTTCTTTTGTATTAAAATCTTTTCCTTGCCCCATTTTCCTTCAAA
708 AGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* ** *
1989915 TCGAAGTTCATCCCTTAAATAAGAAAAGC
773 TCAAAGTTCATCATTTAAATAAGACAAGC
1989944 TTTTTTTCTA
Statistics
Matches: 4796, Mismatches: 659, Indels: 162
0.85 0.12 0.03
Matches are distributed among these distances:
925 9 0.00
926 204 0.04
927 16 0.00
928 11 0.00
929 66 0.01
930 70 0.01
931 71 0.01
932 65 0.01
933 12 0.00
934 8 0.00
935 244 0.05
936 5 0.00
937 2 0.00
941 2 0.00
942 4 0.00
943 120 0.03
944 258 0.05
945 429 0.09
946 269 0.06
947 344 0.07
948 212 0.04
949 191 0.04
950 137 0.03
951 587 0.12
952 1065 0.22
953 395 0.08
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (951 bp):
AGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAATATAGTCT
TCTCACTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAAATTT
TTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGAATACTAGTTTTGATCTTCATTCAT
TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
CCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
CATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATT
AGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTCCACCGTTTTTGATAAAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATT
AGGCACTTTAAACATAGTCTTCTTATAAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAG
GCTTTTTTCCCATGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATAC
TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAAT
GATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
CATCATTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
AAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAGCTTTTT
TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
Found at i:1994990 original size:159 final size:160
Alignment explanation
Indices: 1994298--1994995 Score: 390
Period size: 159 Copynumber: 4.4 Consensus size: 160
1994288 GTACTATTCC
* * * * * * * * * *
1994298 CCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAAGA-TACACGATATTGGTGC
1 CCATTCATTTCAAGATTAGGCACTATAAAAACATTATCCTCAATAAGATTACATGATATTGATGC
*
1994362 TTTGGATTCGCAAGGAAAAG-TGTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
66 TTTGGATTCGCAAGGAAAAGCT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAA
*
1994426 ATGAGCCAAACGTGGATTCTAGTATTGATCT
130 ATGAGACAAACGTGGATTCTAGTATTGATCT
* *** * *
1994457 TCATTCATTTTGTGATTAGGCACTATAAAAACATTATCCTCAATAAGATTA-ATAATATTGATGA
1 CCATTCATTTCAAGATTAGGCACTATAAAAACATTATCCTCAATAAGATTACATGATATTGATGC
*** * ** * ** * * * *** * *
1994521 TTTTCTTTTGCATTG-AAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATTCTTT
66 TTTGGATTCGCAAGGAAAAGCTTTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTCGCGCCTC
* * * * * ***
1994583 AAATAAGACAAGCATTGATTCTTA-AAACAATCT
128 AAATGAGACAAACGTGGATTC-TAGTATTGATCT
* * * * ** * * ***
1994616 CCATTCTTTTCAAGATTTGG-ATCCA-AAAACACATTCTGTTCATTAGGA-TACATGACCGTGAT
1 CCATTCATTTCAAGATTAGGCA-CTATAAAA-ACATTATCCTCAATAAGATTACATGATATTGAT
** * * *
1994678 GCTTTGG-TGTCGCAA-GAAAAGCTTTTTTTTCGCC-GTTTTTGATAGAA-TC-AAGGTTTGTC-
64 GCTTTGGAT-TCGCAAGGAAAAGCTTTTTTCCCACCAATTTTTG-TA-AAGTCTAA-GTTCG-CG
* * * * * * * * * *
1994737 TCTGAAATTAGACGAACTTGAATACTCGTACT-ATTCC
124 CCTCAAATGAGACAAACGTGGATTCTAGTATTGA-TCT
* * * * * * * * * *
1994774 CCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAA-AATACATGATATTGGTGC
1 CCATTCATTTCAAGATTAGGCACTATAAAAACATTATCCTCAATAAGATTACATGATATTGATGC
*
1994838 TTTGGATTCGCAAGGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAA
66 TTTGGATTCGCAAGGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAA
*
1994903 TGAGCCAAACGTGGATTCTAGTATTGATCT
131 TGAGACAAACGTGGATTCTAGTATTGATCT
* * *
1994933 TCATTCATTTCATGATTAGGCACTATAAAAACATTATCCTTAATAAGATTA-ATGATATTGATG
1 CCATTCATTTCAAGATTAGGCACTATAAAAACATTATCCTCAATAAGATTACATGATATTGATG
1994996 ATTTTCTTTT
Statistics
Matches: 382, Mismatches: 127, Indels: 60
0.67 0.22 0.11
Matches are distributed among these distances:
156 1 0.00
157 5 0.01
158 111 0.29
159 248 0.65
160 17 0.04
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (160 bp):
CCATTCATTTCAAGATTAGGCACTATAAAAACATTATCCTCAATAAGATTACATGATATTGATGC
TTTGGATTCGCAAGGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAA
TGAGACAAACGTGGATTCTAGTATTGATCT
Found at i:1996515 original size:110 final size:110
Alignment explanation
Indices: 1996322--1996542 Score: 442
Period size: 110 Copynumber: 2.0 Consensus size: 110
1996312 AAAGTCAAAA
1996322 TTCGTGCCTCAAATGAGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCT
1 TTCGTGCCTCAAATGAGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCT
1996387 CTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTT
66 CTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTT
1996432 TTCGTGCCTCAAATGAGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCT
1 TTCGTGCCTCAAATGAGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCT
1996497 CTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTT
66 CTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTT
1996542 T
1 T
1996543 CTTTTGCATG
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 111 1.00
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (110 bp):
TTCGTGCCTCAAATGAGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCT
CTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTT
Found at i:1998093 original size:159 final size:156
Alignment explanation
Indices: 1996982--2049073 Score: 2295
Period size: 159 Copynumber: 329.1 Consensus size: 156
1996972 GTGTTGAAAT
* *
1996982 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
1997047 CATAACAATCTCCATTGTTTTCAAGATTGGGAT-AAAAAACACATTCCTTTCTTTATGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
** *
1997111 ACT-TTGATGCTTTGGTGCCGCAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* *** * ** * * * *
1997140 CTTTCCTTT-CCTCCGTTTCTGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAATAT-GAATG
1 CTTTTCTTTCCCTATTTTTCT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * *** * * *
1997203 CTCAT-ACTATTCTCCATTCTTTTCGAGATTAGGCA-CTTTAAACATAGTCTTCTCATTAGGATA
63 CTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * * *
1997266 CATGATATAGGTGCTTCGATTTCGCAAGAAACG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * *
1997299 CTTTT-TTCTCACCAATTTTT-ATAAAGTCAAAATTCATGCCTCAAATGAGTCAAACATGGATTC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
*** * ** * * *
1997362 T-AGTTTTAATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCTTCTTTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** * * *
1997424 A-ATGATATTGATGATTTTCTTTTGCATGAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *
1997457 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTCAAATAAGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
1997522 CGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAGACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
1997587 ACTA-TGGTGCTTTGGTGTCGTAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * * * * *
1997616 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAATA-AGAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * * *** * *
1997679 TC-TTACTAATCTCCGTT-TTATCGAGATTAGGCA-CCATAAATGTAGT-TTTCTATAAAGATAC
64 TCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTTTC-ATTAAGATAC
* * * *
1997740 ATGATATTGATGCTTTTGATTCACAAGAAAGG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * * * *
1997772 C-TTTCTTCCCACCAATTTTT-GTAAGGTCAAAATTCGTGCCTTAAATAAGCCAAACGTGGATTC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * ** * * * *
1997835 T-AGTTTTGATCTTCATTCATTTTGGGATTAGGCTCTATAAAA-ACATTCTCTTCTTTAAGATTA
64 TCA-TAACAATCTCCATTC-TTTTCAGATTGGGATCCA-AAAACACATTCT-TTCATTAAGA-TA
* * ** * * *
1997898 -ACGATATTGATGATTTTCTTTTGCATGAAAAT
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* *
1997930 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* *
1997995 CATAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACGCATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
1998060 ACAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
1998089 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * *
1998151 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTTTCA-CAAGGA
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTC-TTTCATTAA-GA
* * * * *
1998212 TACACGATATTGGTGCTTTCGTTTTGCAAGAAATG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
1998247 C-TAT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * ** * *
1998309 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCGCTATAAAA-ACATTCTCCTC-TTCAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATTGGGATCCA-AAAACACATTCT-TTCATT-AAGA
* ** * * *
1998371 TTAC-TGATATTGATGATTTTATTTTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* *
1998406 CTTTTCTTTCCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * ** *
1998471 CGTAATAATCTCCACTCTTTTCATGATTGGGATCCAAAAACATGTTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
1998536 ACAATGATGCTATGGTGTCGCAAGAAAGG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** *
1998565 CTTTT-TTTCACTGTTTTT-TATGGAAA-CAAAGTTTGTCTCTTAAATTAAG-CAAACAT-GAAT
1 CTTTTCTTTCCCTATTTTTCT-T-AAAATCAAAGTTCATCCCTTAAA-TAAGACAAACATCG-AT
* * * * * * * *** * ** * *
1998625 ACTTAT-ACTATTCCCCATTATTTTCAAGGTTAGGCA-CTTTAAACAAAGACTTCTCAGTAGGAT
62 TCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * *
1998688 ACATGATATTGGTGCTTTCGTTTCGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * * * * * *
1998722 C-TTT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
** ** * ** * * * * *
1998784 CT-AGTTTCGCTCTTCATTCTTTTTGTGATTAGGCA-CTATAAAA-ATATTCTCCTCTTTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGAT
* * ** * * *
1998846 GA-ACGATATTGATGATTTTCTTTTGCATTG-AAAT
123 -ACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * ** * * * *
1998880 CTTTTCTTTGCCT-TATTTTCTTTAAAATCAAAATTCATCATTTACATAAGACAAGCATTGAATC
1 CTTTTCTTTCCCTAT-TTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * *
1998944 TCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTACGATACAT
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * * * * *
1999009 GACAGTGATGCTTTCGTGTCGTAAGAAATG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** ** **
1999039 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACAT-GAATAG
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * *** * * *
1999102 GCAT-ACTAATCTCCATTTTTTTCAGGATTAGGCA-CCATAAATGTAGT-ATTC-TATAAGGAGA
64 TCATAAC-AATCTCCATTCTTTTCA-GATT-GGGATCCAAAAACACATTCTTTCAT-TAA-GATA
* **
1999163 CAT-ATATTAATGCTTTCATTTCGCAA-AAAAGG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * ** * * * * *
1999195 C-TTTCTTCCCACCAATTTTT-GTAAAGTCAAAATTTGTGCCTCAAATAAGCCAAACATGGAATC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* **** * * ** * * ** *
1999258 -AAGTTTTGATC-CTCTTTCACTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCCCAATAAGAT
64 TCA-TAACAATCTC-CATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
** ** * * *
1999319 TA-ATGATATTGATAATTTTCTTTTGCATGAAAAT
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* *
1999353 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
1999418 CACAACAATCTCCATTCTTTCCAAGATTGGGATCCAAAAACACATTCCTTTCATTAGGGTACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * ** * *
1999483 ACTA-AGGTGCTCTGGAGTCACAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * **
1999512 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-ACAGACAAACAT-GAAAA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAACATCG-ATT
*** * ** * *** * * **
1999575 CTCATATAC-A-CGATAGTCTTCCCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATA
63 CTCATA-ACAATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * *
1999637 CACGATATTGGTGTTTTGGTTTCGCAAG-AAAG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * ** ** * * * *
1999669 GTTTT-TTTCCCACCAATTTTT-GTAAGGTCAAAAATTCGTGCCACAAACGAGCCAGACGTGGAT
1 CTTTTCTTT--C-CCTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
1999732 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-AAATTCTCTTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA
* * * ** * * *
1999794 TTA-ACGATATTGTTGATTTTCTTTTGCATGAAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
1999829 CTTTTCTTTGCCCTATTTTTCTTAAAATGAAAGTTTAGCCCTTAAGTAAAACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
1999894 CGTAACAATCTCCATTC-TTTCAATGATTGGGATCCAAAAACACATTCTATTCGTTAGGATACAT
65 CATAACAATCTCCATTCTTTTC-A-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * *
1999958 GACAGTGATGCTTTGGTATCGCAAGAAAAG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * *
1999988 -TTTTTTTTCCACTGTTTTTGATAGAATCAATGCTTGC--CTCTTAAATAAGACAAACAT-GAAT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TT-CATCCCTTAAATAAGACAAACATCG-AT
* * * *** * * *
2000049 GCT--TACACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTTTCA-CAAG
62 TCTCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTC-TTTCATTAA-
* * *
2000109 GATACACGACATTGGTGCTTTGGTTTCGCAAG-AAAG
120 GATACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * ** * * ** * ** * *
2000145 GTTTT-TTTCCCACCAATTTTCGTAAGGTCAAAATTTGTACCTCAAACGAGCCTGACGTGGATAT
1 CTTTTCTTT-CC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT-T
**** * * ** * * * * *
2000209 -T-AGTTTTTATCTTCTTTCATTTTGTGATTCGGCAT-TATAAAA-GCATCCTCTTCTTTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
* ** * * *
2000270 TAACA--ATATTGATGATTTTCTTTTGCATGAAAAT
122 T-ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * *
2000304 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCGGCCCTTAAATAAGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * * *
2000369 CGTAACAATCTCCAATCTTTTCGTGATTAGGATCCAAAAACACATTCTATTTATTAGGACACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2000434 ACAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * * *
2000463 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGATAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2000525 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGG-TACTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATTGGGAT-CCAAAAACACATTCTT-TCATTAAGAT
* * * *
2000587 ACACGATATTGTTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * * * * * * *
2000621 C-TAT-TTTCCCATGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC-T---ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* ** * ** * * **** *
2000683 ACT-AGTTTTC-ATCTTCATTCATTTTGTGATTAGG-TGCTATATTTTACATTCTCCTC-TTCAA
62 TCTCA--TAACAATCTCCATTC-TTTTCAGATTGGGAT-CCA-AAAACACATTCT-TTCATT-AA
* ** * * *
2000744 GATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
120 GA-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2000781 CTTTGCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2000846 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACGTTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
2000911 ACAATGATGCTATGGTGTAGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * *
2000940 CTATTT-TCTACCGT-TTTTT-ATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAT-GAATA
1 CT-TTTCT-TTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT-
* * * * * * **** * * * *
2001001 T-TTAT-ACTATTCCCCATTATTTTCAAGGTTAGGCA-CTTTGAACAAAGTCTTCTCACTAGGAT
62 TCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* *
2001063 ACATGATATT-AGTGCTTTTGTTTCGCAAGAAAGG
123 ACATGATATTGA-TGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * * * * * *
2001097 C-TTT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
** * * ** * * * * *
2001159 CT-AGTTTCGATCTTCATTCATTTTGTGTTTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
* * ** * ** *
2001221 TA-ATCATATTGATGATTTTCTTTTGCTTCG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGC-AAGAAAAG
* * ** * ** *
2001255 CTTTTCTTTGCCT-TATTTTCTTTAAAATCAAATTTCATCATTTAAATAAGGCAAGTATCGAATC
1 CTTTTCTTTCCCTAT-TTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * *
2001319 TCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTACGATACAT
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * * ** *
2001384 GACAGTGATGCTTTGGTGTCATAAGAAATG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * ** **
2001414 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * ** *** * * * *
2001478 CAT-ACTAATCTCCGTTTTTTTCGGGATTAGGCA-CCGTAAATGTA-GCGTTC-TATAAG-GAGA
65 CATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTTTCAT-TAAGATACA
* **
2001538 TAGATATTAATGCTTTCATTTCGCAA-AAAAGG
126 T-GATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * * * * * *
2001570 C-TTTCTTCCCACCAATTTTT-GTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAACATGGAATC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* **** * * ** * * * *
2001633 -AAGTTTTGATCTTCTTTCAATTCATGATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAGATT
64 TCA-TAACAATCTCCATTCTTTTCA-GATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** *
2001695 A-ATGATATTGATGATTTTCTTTCGCACAG-AAAT
123 ACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * ** **
2001728 TTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATATCTTAAATAAGACAAGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2001793 CACAACAGTCTCCATTCTTTTCAACATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* *
2001858 ACTA-TGGTGCTTTGGTTTCGCAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * ** * ** * **
2001887 CTTTTCTTTCCACCATTTTTGATAGAATTAAAGTTTGTCTCTTAAATTCGACAACCAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * *** * **
2001951 TCGT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACA-TTGTCTTCTCATTGGGATA
64 TCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACAT-TCTT-TCATTAAGATA
* *
2002013 CATGATATTGGTGCTTTGGTTTCACAAG-AAAG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * ** * * *
2002045 GTTTT-TTTCCTACCAATTTTCGTAAGGTCAAAATTCATACCTCAAATGAGCCAGGCGTGGATAC
1 CTTTTCTTTCC--CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * ** * * * * *
2002109 T-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-AAATTCAATTCTTTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTC-TTTCATTAAGA-T
* * * ** ** * *
2002171 A-ACGATATTAATGATTTACTTTTTCATGAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *
2002204 CTGTTCTTTGCCCTATTTTTCTTAAAACCAAAGTTCAGCCCTTAAATAAAGACAAGCATCGATTC
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAACATCGATTC
* * * * * *
2002269 -CTGTAACAATCTCCATTCTTTCCATGATTGGGATCCAAAAACATATTTTATTCGTTAGGATACA
64 TC-ATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACA
* *
2002333 TGATAGTGATGTTTTGGTATT-GCAAGAAAAG
126 TGATATTGATGCTTTGGT-TTCGCAAGAAAAG
** * * * * *
2002364 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCGTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * *** * * ** **
2002426 CT--TACACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCCTCCCATTGGGA
63 CTCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACA-TTCTTTCATTAAGA
* * * *
2002487 TACACGATATTGGTACTTTGGTTTCCCAAG-AAAG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * * * * * * * * *
2002521 GTTTT-TTTCCCACTAATTTTCGTAAGGTCAAAATTCGTTCGTCAAATGAGCCAGACGTGGATAC
1 CTTTTCTTT-CC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * * *
2002585 T-AGTTTTGATCTTCATTCATTTT-ATGATTAGGCA-CTATAAAA-ACATTCTCTTC-TT---TT
64 TCA-TAACAATCTCCATTC-TTTTCA-GATT-GGGATCCA-AAAACACATTCT-TTCATTAAGAT
* * ** * * *
2002642 A-ACGATATTGATGATTTTTTTTTGCATGAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2002675 CTTTTCTTTGCCCTTTTTTTCTTAAATTCAAACTTCAACCCTTAAATAAGATAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2002740 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACACG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2002805 ACAGTGATGCTTTGGTATCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2002834 CTTTT-TTT--CTACTGTTTTCGATAGAATCAAACCTT-GTCTCTTAAATAAGGCAAACAT-GAA
1 CTTTTCTTTCCCTA-T-TTTTC-TTAAAATCAAA-GTTCATCCCTTAAATAAGACAAACATCG-A
* * * * *** * * **
2002894 TACTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGG
61 TTCTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAG
* * * * *
2002956 ATACACGATATTGGTACTTTCGTTTCCCAAG-AAAG
121 ATACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * * * * ** * *
2002991 GTTTT-TTTCCCACTAATTTTCGTAAAGTCAAAATTCGTTCGTCAAATGAGCCAGATGTGGATAC
1 CTTTTCTTT-CC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
** * * * * * *
2003055 T-AGTTTCGATCTTCATTCATTTT-ATGATTAGGCA-CTATAAAA-ACATTCTCTTCTTTACGAT
64 TCA-TAACAATCTCCATTC-TTTTCA-GATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
* * ** * * *
2003116 TA-ACGATATTGATGATTTTCTTTTGCATGAAAAT
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *
2003150 CTTTCCTTTGCCCTTTTTTTCTTAAATTCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * *
2003215 TGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACACG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2003280 ACAGTGATGCTTTGGTATCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * *
2003309 CTTTT-TCTCCACT-GTTTTCGATAGAATCAAAGCT-ATCTCTTAAATAAGGCAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * ** *
2003370 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCCCTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2003432 ACATGATATTGGTGCTTTTGTTTCGCAACAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* *** * *** * * * * * * * *
2003466 CTGTTT-TCTCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATA
1 CT-TTTCTTTC--CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * * *
2003529 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTC-TTCAAGA
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAGA
* * * ** *
2003590 TTAC-CGATATTGATGATTTCTTT-TTTTTGCTTTG-AAAT
122 -TACATGATATTGATG----CTTTGGTTTCGC-AAGAAAAG
* * **
2003628 CTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTT-AGTCCCTTAAATAAGACAAGGATCGATTC
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCA-TCCCTTAAATAAGACAAACATCGATTC
** * * * *
2003692 TTGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCGTTAGGACACAA
64 TCATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * *
2003757 GATAGTGATGCTTCGGTATCGCAAGAAAAG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * ** *
2003787 CTTTT-TTCCCACTGTTTTTGATAGAATCAAAGCTT-GTCTGTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * **** * * **
2003849 CT--TACACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTGAACATAGTCTTCTCATTGGGA
63 CTCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGA
* * * *
2003910 TACACGATATTGGTGCTTTGGTTTCACAA-CAAAG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * ** * * *
2003944 GTTTT-TTTCCCACCAATTTTCGTAAGGTCAAAATTCGTGCCTCAAATGAG-CTTGACGTGGATA
1 CTTTTCTTT-CC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCGATT
**** * ** * * * *
2004007 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-AAATTCTCTTCCTTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
* * * *
2004069 TA-ACGATATTGATGATTT--TCTTCTGCATGAAAAT
122 TACATGATATTGATGCTTTGGT-TTC-GCAAGAAAAG
* * * * *
2004103 CTTTTCTTTGCCCTATTTTTTTTAAAATCAAAGCTCAGCCCTTAAATAAGACAAGCTTCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2004168 CATAACAATCTCCATTCTTTTCATGATTAGCATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2004233 ACAATGATGCTTTGGTATCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * *
2004262 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCC-TAAATAAGGCAAACAT-GAAT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATC-CCTTAAATAAGACAAACATCG-AT
* * * * *** * * * *
2004323 ACTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTTTCACTAGGA
62 TCTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTC-TTTCATTAAGA
* * * *
2004385 TACACGATATTGGTGCTTTCGTTTCGCAAGAAATG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * *** * * * * * * *
2004420 C-GAT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * ** * * *
2004482 ACT-AGTTTTGATCTTCATTAATTTTGTGATTAGG-TACTATAAAA-ACATTCTACTC-TTCAAG
62 TCTCA-TAACAATCTCCATT-CTTTTCAGATTGGGAT-CCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2004543 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* *
2004579 CTTTTCTTT---GA----TCTTAAAATCAAAGGTCATCCCTTAAATAAGAC-AACGATCGATTC-
1 CTTTTCTTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC-ATCGATTCT
* * * * * * *
2004635 CTGTAACAATCTCCACTCTTTCCATGATCGGGATCCAAAAATACGTTCTATTCATTAGGATACAT
65 C-ATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
** * **
2004700 GATAGGGATGCTTTGGTATCATAA-AAAAG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** ** * **
2004729 CTTTT-TTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * * *
2004792 TTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAATCTTCTCACTAGGATA
64 TCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * * *
2004854 CACGATATTGGTGCTTTCGTTTCGCAAGCAATG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * *
2004887 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCTATA-TTCATGCCTTAAATGAGCCAAACGTGGA
1 CTTTTCTTTCCC----TATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCGA
* **** * ** * * * *
2004948 TACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATATAA-ACATTCTCCTC-TTCAA
61 TTCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AA
* * ** * ** *
2005009 GATTAC-TGATATTGGTGATTTTCTTTTGCTTTG-AAAT
120 GA-TACATGATATTGATGCTTTGGTTTCGC-AAGAAAAG
* * * * * * * **
2005046 CTTTTCTTTGCCCTATTTTCCTTAAAATGAATGTTCATCTCTTAAGTAAGACAAGCATCAATTAA
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* *
2005111 CGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2005176 ACAATGATGCTATGGTGTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * ** * ** *
2005205 CTTTT-TTTCCACCGTTTTTGATAGAATCAAATTTTGTCTCC-TAAATTAGACAAACATTAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAACATCGATTC
* * * *** * * **
2005268 GT-AT-ACTATTCCCCATTCTTTTCAAGATTAGG-TACTTTAAACAAAGTCTTCTCGCT-AGAAT
64 -TCATAAC-AATCTCCATTCTTTTC-AGATTGGGAT-CCAAAAACACATTCTT-TCATTAAG-AT
* * * * *
2005329 ACATGATGTTGGTGCTTTCGTTTTGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * * * *
2005363 CTTTT-TTCCCACGAAATTTT-GTAAGGTCAAAATTCGTACCTCAAATGAGCCAAACGTGGATAC
1 CTTTTCTTTCC-C-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * * ** * * *
2005426 T-AGTTTTGATCTTCTTTCACTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** *
2005488 A-ATGATATTGATGATTTTCTTTCGCATAG-AAAT
123 ACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2005521 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * * *
2005586 CGCAAC-ATCTCCATTCTTATCATGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* *
2005650 ACTA-TGGTGCTTTGGTGTCGCAAGAAACA-
128 A-TATTGATGCTTTGGTTTCGCAAGAAA-AG
** *** * ** * * * **
2005679 CTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAACA-AGAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
** * * * * *** * * **
2005743 TC-GCACTATTCCCCATTGTTTTCAAGATTAGG-TACTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAAC-AATCTCCATTCTTTTC-AGATTGGGAT-CCAAAAACACATTCTT-TCATTAAGATAC
* * *
2005806 ACGATATTGGTGCTTTGGTTGCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * * * * * * *
2005837 GTTTT-TTTACACC-AATTTTCGTAAGGTCAAAATTCGTGCCTTAAATGAGCCAGACGTGGATAC
1 CTTTTCTTT-C-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
*** * ** * * ** * *
2005900 T-AGT-TTTATCTTCATTCGTTTTGTGATTAGGCA-CTATAAAA-ATGTTCTCCTCTTTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** *
2005961 A-ATGATATTGATGATTTTCTTGT-GCAA-AGAAAT
123 ACATGATATTGATGCTTTGGTT-TCGCAAGA-AAAG
* *
2005994 CTTTTCTTTGCCCT-TTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTC
1 CTTTTCTTT-CCCTATTTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * * *
2006058 -CTGTAACAATCTCCATTCTTTCCATGATCGGGATCCAAAAATACATTCTATTCATTAGGATACA
64 TC-ATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACA
** * *
2006122 TGATAAGGATGCTTTGGTATCGTAA-AAAAG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** ** * **
2006152 CTTTT-TTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * * *
2006215 TTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAATCTTCTCACTAGGATA
64 TCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * * *
2006277 CACGATATTGGTGCTTTCGTTTCACAAGAAATG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * *
2006310 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCTAAA-TTCATGCCTTAAATGAGCCAAACGTGGA
1 CTTTTCTTTCCC----TATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCGA
* **** * ** * * *
2006371 TACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTC-TTCAA
61 TTCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AA
* * * ** * ** *
2006432 GATTA-TTGATATTGGTGATTTTCTTTTGCTTTG-AAAT
120 GA-TACATGATATTGATGCTTTGGTTTCGC-AAGAAAAG
* * *
2006469 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2006534 CGTAACAATCTCCATTTTTTTCACGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * ** *
2006599 ACAATGATGCGATGGTGTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * *
2006628 CTTTT-TTTCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAA-ACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAA-TAAGACAAACATCG-ATT
* * * * *** * * * *
2006690 CTTAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACAAAGTCTTCTCACTAGGATA
63 CTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * *
2006753 CATGATTTTGGTGCTTTCGTTTCGCAAGAAAGG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * * * *
2006786 C-TTT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTCATGCCTTAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
* **** * ** * * ** * *
2006848 GT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCACCTCTTTAAAAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTC-TTTCATTAAGA-
* ** * * *
2006910 TA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
** * ** *
2006944 CTCCTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCATCATTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2007009 CGTAACAATATCCATTCCTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2007074 ACAGTGATGCTTTGGTGTCGTAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ***** * * * *
2007103 CTTTTTTTTCACC-GTTTTTGACGGAATCAAAGTT--TGCCTCTTAAACAAGATAAACATGGATA
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAACATCGATT
* * * ** * ** *
2007165 GTCAT-ACTAATCTCCATTTTTTTCAGGATTAGGCGCC-ATAA-ATGTTGCATTC-TATAAGGAT
63 CTCATAAC-AATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATT-CTTTCAT-TAA-GAT
* * * * *
2007226 ACA-GAGATTAACGCTTTCGTTTCGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * ** *
2007259 C-TTTC-TTCCCATCAATTTTT-GTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAATGTGGA--
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
* *** * * ** * * *
2007319 ATCA-AGTTGATCTCCTTTCACTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGAT
63 CTCATA-ACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGAT
* ** *
2007381 GAACA--ATATTGATGATTTTCTTTCGCATAG-AAAT
123 --ACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2007415 CTTTTCTTCACCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTT-TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2007480 CACAACAATCTCCCTTCTTTTCAAGATTGGTATCCAAAAACACATTCCCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * *
2007545 ACTA-TGGTGCTTTGGTATCGCAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * * **
2007574 CTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATCCA-ACAAACAT-GAAAA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAACATCG-ATT
* * * *** * * **
2007637 CTCGT-ACAAT-TACCCATTCTCTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGAT
63 CTCATAACAATCT--CCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* *
2007699 ACACGATATTCG-TGCTTTGGTTTCACAAG-AAAG
123 ACATGATATT-GATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * * *
2007732 GTTTT-TTTCCCGCCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CAAGACGTGGATA
1 CTTTTCTTT-CC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-ACATCGATT
*** * * ** * * *
2007795 C-CAGCT-TTGATCTTCACTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCTTCTTTAAGA
63 CTCA--TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA
* * * * *
2007856 TTA-ACGATATTGATGATTT--TCTTCTACATGAAAAT
122 -TACATGATATTGATGCTTTGGT-TTC-GCAAGAAAAG
* * * * * *
2007891 CTTTTCTTTGCCCTAATTTTCTTAAAATCAAAGTTCAACCCTTAAATAACATAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* *
2007956 CATAACAATCTCCATTCTTTTCATGATTGGGATCAAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2008021 ACAGTGATGCTTTGGTATCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2008050 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGTCAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
** * * * * *** * * * *
2008112 CTTGT-GCTAT-TCCCTATTCTTCTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2008174 ACACGATATTGGTGCTTTCGTTTCACAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2008208 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * ** * * *
2008270 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCGCTATAAAA-ACATTCTCCTC-TTCAGGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATTGGGATCCA-AAAACACATTCT-TTCATT-AAGA
* * * * ** * * *
2008332 TTTC-TAATATTAATGATTTTCTTTTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2008367 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2008432 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2008497 ACAATGATGCTATGGTGTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * *
2008526 CTTGT-TTTCACCGT-TTTTT-ATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAT-GAATA
1 CTTTTCTTTC-CC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * ** * * * * *** * * * *
2008587 CTTAT-GCTTTTCCCCATTATTTTCAAGGTTAGGCA-CTTTAAACAAAGTCTTCTCACTAGGATA
63 CTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * *
2008650 CATGACAATGATGCTATGGTGTCGCAAGAAAAG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2008683 CTTTT-TTTCACCGT-TTTTT-ATAGAATCAAAG-TCTGTCTCTTAAATTAGACGAACAT-GAAT
1 CTTTTCTTTC-CC-TATTTTTCTTAAAATCAAAGTTC-ATCCCTTAAATAAGACAAACATCG-AT
* * * ** * * * * *** * * * *
2008743 ACTTAT-GCTTTTCCCCATTATTTTCAAGGTTAGGCA-CTTTAAACAAAGTCTTCTCACTAGGAT
62 TCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * *
2008806 ACATGATATTGGTGCTTTCGTTTCGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * * * * * *
2008840 CTTTT-TTTCCATGAAATTTT-GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATAC
1 CTTTTCTTTCCCT--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * * ** * * *
2008903 T-AGTTTTGATCTTCTTTCACTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** * * *
2008965 A-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
123 ACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * * * * *
2008998 CTTCTCTTTGCCATATTTTTTTTAAAATCAAAGTTCATCTCTTGAATAAGACAAGCATC-ATTTA
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGA-TTC
* * *
2009062 TCATAACAATATCCATTCTTTTCAAGATTTGGATCCAAAAACACATTCTATTCATTAGGATACAT
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * * * *
2009127 GACAATGATGCTATGGTGTCGCAAGACAAG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * * * ** *
2009157 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATTAGACAAACATTAATACT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *** * * *
2009221 TAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACA-AGTCTTCTCACTAGGATACA
65 CATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATACA
* *
2009283 TGATATTGATGCTTTCGTTTCGCAAGAAAGG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * ** * * * * * * * *
2009314 C-ACT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * * ** * *
2009376 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCACCTCTTTAAAAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTC-TTTCATTAAGA-
* ** * * *
2009438 TA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * * * * * *
2009472 CTTCTCTTTGCCATATTTTTTTTAAAATCAAAGTTCATCTCTTGAATAAGACAAGCATCAATTAT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2009537 CCTAACAATATCCATTCTTTTCAAGATTTGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
2009602 ACAATGATGCTATGGTGTCGCAAGACAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * * ** *
2009631 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATACT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *** * * *
2009695 TAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACA-AGTCTTCTCACTAGGATACA
65 CATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATACA
* *
2009757 TGATATTGATGCTTTCGTTTCGCAAGAAAGG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * ** * * * * * * * *
2009788 C-ACT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * * ** * *
2009850 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCACCTCTTTAAAAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTC-TTTCATTAAGA-
* ** * * *
2009912 TA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * * * * * *
2009946 CTTCTCTTTGCCATATTTTTTTTAAAATCAAAGTTCATCTCTTGAATAAGACAAGCATCAATTAT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2010011 CATAACAATATCCATTCTTTTCAAGATTTGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
2010076 ACAATGATGCTATGGTGTCGCAAGACAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * * * ** *
2010105 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTGGTCTCTCAAATTAGACAAACATTAATACT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *** * * *
2010169 TAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACA-AGTCTTCTCACTAGGATACA
65 CATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATACA
* *
2010231 TGATATTGATGCTTTCGTTTCGCAAGAAAGG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * ** * * * * * * * *
2010262 C-ACT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * * ** * *
2010324 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCACCTCTTTAAAAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTC-TTTCATTAAGA-
* ** * * *
2010386 TA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * ** **
2010420 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAATTTCATCATTTAAATAAGACAAGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2010485 CGTAACAATCTCCCTTCCTTTCAAGATTGGGATCCAAAAACACATTTTATTCTTTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * **
2010550 ACTA-TGGTGCTTTGGTGTCATAAGAAAAG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * *
2010579 CTTTTTTTTCCAC-AGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTA-TTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * * **
2010642 GTCAT-ACTAATCTCCATTTTTTTCGGGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGG
63 CTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-G
* * * *
2010701 ATACAT-ATATTAATGCTTTCGTTTCGCCAGAAAGG
121 ATACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * *
2010736 C-TTTCTTCCTACCAATTTTT-GTAAAGTCAAAGTTCGTGCCTTAAATAAGCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * *
2010798 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATT-TTCCTCATTAA
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCTT--TCATTAA
* * ** *
2010857 GATTA-GTGATATTGATGATTTTCTTTCGCATAG-AAAT
120 GA-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* *
2010894 CTTTTCTTTCCCATATTTTGCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTTCCC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * * *
2010959 CACAATAATATCCATTCTTTTCAAGATTAGGATCCAAAAACACATTCCCTTCATTAGGATAGATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * *
2011024 ACTA-TGGTGCTTTGGTATCACAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * * *
2011053 CTTTTCTTTCCACCGTTTTTGATAGAATCAGAA-TTTGTCTCTTAAATCCA-ACAAACAT-GAAA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCA-AAGTTCATCCCTTAAAT-AAGACAAACATCG-AT
* * * * *** * * *
2011115 ACTCAT-ACAATTCCCCATTCCTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTAGGAT
62 TCTCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2011178 ACACGATATTGGTGCTTTGGTTTCGTAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * * * * * * * **
2011212 CTTTT-TTTCCACCAAATTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CAAGACGTGGATAA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-ACATCGATTC
**** * * ** * * *
2011275 T-AGTTTTGATCTTCAATCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCTTCTTTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** * ** * * *
2011337 A-ACGATATTGGCGATTTTCTTTTGCATGAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * *
2011370 CTTTTCTTTGCCTTACTTTTCTTAAAATCAAAGTTCAACCTTTAAATAGGATAAGCATTGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2011435 CGTAACAATCTCCATTCTTTTCATGATTGGGATCTAAAAACATATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2011500 ACAGTGATGCTTTGGTATCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2011529 CTTTTTTTTCACTGTTTTTGC-TAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCCCTATTTTT-CTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * ** * * *
2011591 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CCTTAAACATAGTCTTCTCACTAAGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * ** * * *
2011653 ACACGATATTGGTGCTTTCTTTTCACAGGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *** * ** * * * * *
2011687 C-TGT-TTTCCCAAGAAAATTTT-GTATGGTCAAAATTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * *
2011749 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTACAAAA-ACATTCTCCTC-TTCAAG
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2011810 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2011846 CTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATTC
1 CTTTTCTTT-CCCTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * * *
2011910 TCGTAATAATCTCCATTTTTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATACAT
64 TCATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * * * * *
2011975 GACAATGATGCTATGCTGTCGCAAGAAACG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** ** * ** * * * *
2012005 -TTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGGATACT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * ** * * * *
2012069 TAT-ACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAATA-A-AGTCTTCTCACTAGGATAC
65 CATAAC-AATCTCCATTCTTTTC-AGATT-GGGA-TCCAAAAACACATTCTT-TCATTAAGATAC
* *
2012131 ATGATATTGGTGCTTTCGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * ** * * * * * * * * *
2012162 -GGTTCTTTCCCATGAAATTTT-GTAAGGTAAAAATTCGTGCCTCAAATAAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * * * *
2012225 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA-
* ** * * *
2012287 TA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * ** * **** *
2012321 CTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTAACGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * ** * *
2012386 CGTAACAATCTCCTTTCCCTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACA-ATACAT
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTA-AGATACAT
* * *
2012450 GACTA-TGGTGCTTTGGTGTCGTAAGAAAAG
127 GA-TATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * ** * **
2012480 CTTTTTTTTCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-C-A-AAT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * ** * * *
2012541 -AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTCTATAAGGATACA
65 CA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCA--TTA-A
* ** * ** * * *
2012603 GATTTTA-ACGATATTGGCGATTTTCTTTTGCATGAAAAT
120 GA---TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * *
2012642 CTTTTCTTTGCCTTACTTTTCTTAAAATCAAAGTTCAACCTTTAAATAGGATAAGCTTTGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2012707 CGTAACAATCTCCATTCTTTTCATGATTGGGATCTAAAAACATATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2012772 ACAGTGATGCTTTGGTATCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2012801 CTTTTTTTTCACTGTTTTTGC-TAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCCCTATTTTT-CTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2012863 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2012925 ACACGATATTGGTGCTTTTGTCTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *** * * * * * * *
2012959 -ATGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2013021 ACT-AGTTTTGATCTTCATTCATTTTGTGATTCGGCA-CTATAAAA-ACATTCTCCTC-TTCAAT
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2013082 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2013118 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2013183 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * * *
2013248 ACAATAATGCTATGGTGTCGGAACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * ** *
2013277 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * * *
2013340 T--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
64 TCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2013401 AGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2013435 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * *
2013497 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * *
2013558 ATTA-ATGATATTAATGATTTTCTTTTGCAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2013594 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** *
2013659 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2013724 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2013752 CTTTT-TTTCCACTATTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2013814 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2013876 ACACGATATTGGTGCTTTTGTTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2013910 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * *
2013972 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTACAAAA-ACATTCTCCTC-TTCAAG
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2014033 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2014069 CTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATTC
1 CTTTTCTTT-CCCTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * *
2014133 TCGTAATAATCTCCACTT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATACA
64 TCATAACAATCTCCA-TTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACA
* * * *
2014197 TGACAATGATGCTAT-GTTGTCGCAAGAAACG
126 TGATATTGATGCTTTGGTT-TCGCAAGAAAAG
** ** * * * * *
2014228 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2014290 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* ** * *
2014352 ACATGATATTGGTGCTTTTATTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2014386 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2014448 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA
* ** * * *
2014510 TTA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* ** * ****
2014545 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2014610 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2014675 A-ATATGGTGCTTTGGTGTT-GTAAGAAAAG
128 ATAT-TGATGCTTTGGT-TTCGCAAGAAAAG
* * ** * ** * **
2014704 CTTTTTTTTCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-C-A-AAT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * **
2014765 -AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGGA
65 CA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * *
2014823 TACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * ** * *
2014857 C-TTTCTTCCTACCAATTTTT-ATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * * * *
2014919 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAG
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** *
2014979 ATTA-ATGATATTAATGATTTTCTTTCGCATAG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * **
2015015 CTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2015080 CACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAGG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * **
2015145 ACTA-TGGTGCTTTGGTATCGCGAGAAATT
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** **
2015174 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * **
2015238 TCAT-ACAATTCCCCATTTTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2015301 ACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * *
2015332 GTTTT-TTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACAT-GCAT
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCG-AT
* **** * ** * * *
2015394 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCTTTCTTTATGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGA
* * ** * ** *
2015456 TTA-ACGATATTGATGATTTTCTTTTGCTTGAAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2015491 CTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2015556 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2015621 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2015650 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2015712 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2015774 AGACGATATTGGTGCTTTCGTTTCACAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2015808 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2015870 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* ** * * *
2015928 AGATTAC-TGATATTGATGATTTTTTTTTTTTGCATTG-AAAT
119 AGA-TACATGATATTGATG---CTTTGGTTTCGCA-AGAAAAG
* ** *
2015969 CTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2016034 CGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2016099 ACAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2016128 CTTTT-TTCCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2016190 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2016252 ACACGATATTGGTGCTTTTGTCTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2016286 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2016348 ACT-AGTTTTGATCTTCATTCATTTTGTGATTCGGCA-CTATAAAA-ACATTCTCCTC-TTCAAT
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2016409 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2016445 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2016510 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * * *
2016575 ACAATAATGCTATGGTGTCGGAACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * ** *
2016604 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * * *
2016667 T--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
64 TCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2016728 AGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2016762 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * * *
2016824 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAC
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * *
2016885 ATTA-ATGATATTAATGATTTTCTTTTGCAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2016921 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** *
2016986 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2017051 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2017079 CTTTT-TTTCCACTATTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2017141 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2017203 ACACGATATTGGTGCTTTTGTTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2017237 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * *
2017299 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTACAAAA-ACATTCTCCTC-TTCAAG
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2017360 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2017396 CTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATTC
1 CTTTTCTTT-CCCTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * *
2017460 TCGTAATAATCTCCACTT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATACA
64 TCATAACAATCTCCA-TTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACA
* * * *
2017524 TGACAATGATGCTAT-GTTGTCGCAAGAAACG
126 TGATATTGATGCTTTGGTT-TCGCAAGAAAAG
** ** * * * * *
2017555 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2017617 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* ** * *
2017679 ACATGATATTGGTGCTTTTATTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2017713 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2017775 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA
* ** * * *
2017837 TTA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* ** * ****
2017872 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2017937 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2018002 A-ATATGGTGCTTTGGTGTT-GTAAGAAAAG
128 ATAT-TGATGCTTTGGT-TTCGCAAGAAAAG
* * ** * ** * **
2018031 CTTTTTTTTCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-C-A-AAT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * **
2018092 -AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGGA
65 CA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * *
2018150 TACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * ** * *
2018184 C-TTTCTTCCTACCAATTTTT-ATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * * * *
2018246 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAG
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** *
2018306 ATTA-ATGATATTAATGATTTTCTTTCGCATAG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * **
2018342 CTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2018407 CACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAGG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * **
2018472 ACTA-TGGTGCTTTGGTATCGCGAGAAATT
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** **
2018501 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * **
2018565 TCAT-ACAATTCCCCATTTTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2018628 ACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * *
2018659 GTTTT-TTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACAT-GCAT
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCG-AT
* **** * ** * * *
2018721 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCTTTCTTTATGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGA
* * ** * ** *
2018783 TTA-ACGATATTGATGATTTTCTTTTGCTTGAAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2018818 CTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2018883 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2018948 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2018977 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2019039 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2019101 AGACGATATTGGTGCTTTCGTTTCACAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2019135 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2019197 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* ** * * *
2019255 AGATTAC-TGATATTGATGATTTTTTTTTTTTGCATTG-AAAT
119 AGA-TACATGATATTGATG---CTTTGGTTTCGCA-AGAAAAG
* ** *
2019296 CTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2019361 CGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2019426 ACAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2019455 CTTTT-TTCCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2019517 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2019579 ACACGATATTGGTGCTTTTGTCTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2019613 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2019675 ACT-AGTTTTGATCTTCATTCATTTTGTGATTCGGCA-CTATAAAA-ACATTCTCCTC-TTCAAT
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2019736 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2019772 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2019837 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * * *
2019902 ACAATAATGCTATGGTGTCGGAACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * ** *
2019931 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * * *
2019994 T--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
64 TCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2020055 AGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2020089 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * *
2020151 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * *
2020212 ATTA-ATGATATTAATGATTTTCTTTTGCAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2020248 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** *
2020313 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2020378 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2020406 CTTTT-TTTCCACTATTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2020468 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2020530 ACACGATATTGGTGCTTTTGTTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2020564 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2020626 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA
* ** * *
2020688 TTA-ATGATATTGATGATTTTCATTT-GCATTG-AAAT
122 -TACATGATATTGATG-CTTTGGTTTCGCA-AGAAAAG
* ** * ****
2020723 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2020788 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2020853 A-ATATGGTGCTTTGGTGTT-GTAAGAAAAG
128 ATAT-TGATGCTTTGGT-TTCGCAAGAAAAG
* * ** * ** * **
2020882 CTTTTTTTTCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-C-A-AAT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * **
2020943 -AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGGA
65 CA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * *
2021001 TACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * ** * *
2021035 C-TTTCTTCCTACCAATTTTT-ATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * * * *
2021097 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAG
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** *
2021157 ATTA-ATGATATTAATGATTTTCTTTCGCATAG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * **
2021193 CTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2021258 CACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAGG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * **
2021323 ACTA-TGGTGCTTTGGTATCGCGAGAAATT
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** **
2021352 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * **
2021416 TCAT-ACAATTCCCCATTTTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2021479 ACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * *
2021510 GTTTT-TTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACAT-GCAT
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCG-AT
* **** * ** * * *
2021572 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCTTTCTTTATGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGA
* * ** * ** *
2021634 TTA-ACGATATTGATGATTTTCTTTTGCTTGAAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2021669 CTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2021734 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2021799 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2021828 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2021890 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2021952 AGACGATATTGGTGCTTTCGTTTCACAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2021986 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2022048 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* ** * * *
2022106 AGATTAC-TGATATTGATGATTTTTTTTTTTTTGCATTG-AAAT
119 AGA-TACATGATATTGATG----CTTTGGTTTCGCA-AGAAAAG
* ** *
2022148 CTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2022213 CGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2022278 ATAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2022307 CTTTT-TTCCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2022369 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2022431 ACACGATATTGGTGCTTTTGTCTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2022465 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2022527 ACT-AGTTTTGATCTTCATTCATTTTGTGATTCGGCA-CTATAAAA-ACATTCTCCTC-TTCAAT
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2022588 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2022624 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2022689 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * * *
2022754 ACAATAATGCTATGGTGTCGGAACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * ** *
2022783 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * * *
2022846 T--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
64 TCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2022907 AGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2022941 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * *
2023003 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * *
2023064 ATTA-ATGATATTAATGATTTTCTTTTGCAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2023100 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** *
2023165 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2023230 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2023258 CTTTT-TTTCCACTATTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2023320 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2023382 ACACGATATTGGTGCTTTTGTTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2023416 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2023478 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA
* ** * *
2023540 TTA-ATGATATTGATGATTTTCATTT-GCATTG-AAAT
122 -TACATGATATTGATG-CTTTGGTTTCGCA-AGAAAAG
* ** * ****
2023575 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2023640 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2023705 A-ATATGGTGCTTTGGTGTT-GTAAGAAAAG
128 ATAT-TGATGCTTTGGT-TTCGCAAGAAAAG
* * ** * ** * **
2023734 CTTTTTTTTCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-C-A-AAT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * **
2023795 -AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGGA
65 CA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * *
2023853 TACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * ** * *
2023887 C-TTTCTTCCTACCAATTTTT-ATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * * * *
2023949 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAG
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** *
2024009 ATTA-ATGATATTAATGATTTTCTTTCGCATAG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * **
2024045 CTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2024110 CACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAGG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * **
2024175 ACTA-TGGTGCTTTGGTATCGCGAGAAATT
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** **
2024204 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * **
2024268 TCAT-ACAATTCCCCATTTTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2024331 ACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * *
2024362 GTTTT-TTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACAT-GCAT
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCG-AT
* **** * ** * * *
2024424 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCTTTCTTTATGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGA
* * ** * ** *
2024486 TTA-ACGATATTGATGATTTTCTTTTGCTTGAAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2024521 CTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2024586 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2024651 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2024680 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2024742 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2024804 AGACGATATTGGTGCTTTCGTTTCACAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2024838 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2024900 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* ** * * *
2024958 AGATTAC-TGATATTGATGATTTTTTTTTTTTTGCATTG-AAAT
119 AGA-TACATGATATTGATG----CTTTGGTTTCGCA-AGAAAAG
* ** *
2025000 CTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2025065 CGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2025130 ATAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2025159 CTTTT-TTCCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2025221 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2025283 ACACGATATTGGTGCTTTTGTCTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2025317 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2025379 ACT-AGTTTTGATCTTCATTCATTTTGTGATTCGGCA-CTATAAAA-ACATTCTCCTC-TTCAAT
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2025440 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2025476 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2025541 CGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * * *
2025606 ACAATAATGCTATGGTGTCGGAACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * ** *
2025635 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * * *
2025698 T--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
64 TCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2025759 AGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2025793 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * *
2025855 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * *
2025916 ATTA-ATGATATTAATGATTTTCTTTTGCAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2025952 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** *
2026017 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2026082 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2026110 CTTTT-TTTCCACTATTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2026172 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2026234 ACACGATATTGGTGCTTTTGTTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2026268 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * *
2026330 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTACAAAA-ACATTCTCCTC-TTCAAG
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * * *
2026391 ATTAC-TGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2026427 CTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATTC
1 CTTTTCTTT-CCCTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * *
2026491 TCGTAATAATCTCCACTT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATACA
64 TCATAACAATCTCCA-TTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACA
* * * *
2026555 TGACAATGATGCTAT-GTTGTCGCAAGAAACG
126 TGATATTGATGCTTTGGTT-TCGCAAGAAAAG
** ** * * * * *
2026586 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2026648 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* ** * *
2026710 ACATGATATTGGTGCTTTTATTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2026744 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2026806 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA
* ** * * *
2026868 TTA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* ** * ****
2026903 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2026968 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2027033 A-ATATGGTGCTTTGGTGTT-GTAAGAAAAG
128 ATAT-TGATGCTTTGGT-TTCGCAAGAAAAG
* * ** * * *
2027062 CTTTTTTTTCACC-GTTTTTGATAGAATCAATGTT--TGCCTCTTAAATAAGACAAACA-C-A-A
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAACATCGATT
* * * **
2027121 AT-AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAG
63 CTCA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-
* * * *
2027179 GATACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGG
120 GATACATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * ** * *
2027215 C-TTTCTTCCTACCAATTTTT-ATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * * * *
2027277 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAG
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** *
2027337 ATTA-ATGATATTAATGATTTTCTTTCGCATAG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * **
2027373 CTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2027438 CACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAGG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * **
2027503 ACTA-TGGTGCTTTGGTATCGCGAGAAATT
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** **
2027532 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * **
2027596 TCAT-ACAATTCCCCATTTTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2027659 ACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * *
2027690 GTTTT-TTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACAT-GCAT
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCG-AT
* **** * ** * * *
2027752 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCTTTCTTTATGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGA
* * ** * ** *
2027814 TTA-ACGATATTGATGATTTTCTTTTGCTTGAAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2027849 CTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2027914 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2027979 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * *
2028008 CTTTT-TTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2028070 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * * *
2028132 AGACGATATTGGTGCTTTCGTTTCACAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2028166 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2028228 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* ** * * *
2028286 AGATTAC-TGATATTGATGATTTTTTTTTTTTGCATTG-AAAT
119 AGA-TACATGATATTGATG---CTTTGGTTTCGCA-AGAAAAG
* ** *
2028327 CTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2028392 CGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2028457 ACAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2028486 CTTTT-TTCCCACTATTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * * *** * * *
2028548 CTTAT-ACTAT-TCCCTATTCTTTTCAGGATTAAGCA-CTTTAAACATAGTCTTCTCACTAAGAT
63 CTCATAACAATCT-CC-ATTCTTTTCA-GATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2028610 ACACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * ** *
2028644 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTTAAATGAGCCAAATGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * *
2028706 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCAGT--ATAAAA-ACATTCTCCTC-TTCAA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCA-AAAACACATTCT-TTCATT-AA
* * * * * * *
2028766 AATTAC-TGATATTAATGATTAT-CTTTTGCATTG-AAAT
120 GA-TACATGATATTGATGCTT-TGGTTTCGCA-AGAAAAG
* * *
2028803 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATACT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2028868 CATAACAATCTCCACTCTTTTCATGATTCGGATCCAAAAACTCATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* ** * * *
2028933 ACAACGATGCTATGGTGTCGC-ACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** ** ** *
2028961 CTTTT-TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATTCGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * * *
2029024 TTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACAAAGTCTTCTCACTAGGATA
64 TCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * * *
2029086 CTTGATATTGGTGTTTTCGTTTCACAAG-AAAG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *** * * * * *
2029118 GTTGT-TTTCCCAAGAAATTTTT-GTATTGTCTAAA-TTCATGCCTTAAATGAGCCAAACGTGGA
1 CTTTTCTTTCCC----TATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCGA
** **** ** * * **
2029180 CACT-AGTTTTGATCAT-CATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCACCTC-TTCA
61 TTCTCA-TAACAATC-TCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTC-TTTCATT-A
* *
2029240 AGATTAC-TG--A-T-A----TTGGTATCGCAAGAAATG
119 AGA-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * ** * * **
2029270 CTTTTCTTTCCACCGTTTTT-TATAGAATTAAAGTTTGTCTCTTACATCCGACAAACAT-GA---
1 CTTTTCTTTCC-CTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * *** * * **
2029330 -AAT-ACAATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTC-TTTTGTATA
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAG-ATA
* *
2029391 CACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * * * * *
2029423 GTTTTTTTTCTAACC-AATTTTCGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAGACGTGGATA
1 CTTTTCTTTC---CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * * * * * * *
2029487 CT-AGTTTTGATCTTCATTCATTTCGTGATTAGGCA-CTATAAAA-ACAATCTCTTCTTTAAGAT
63 CTCA-TAACAATCTCCATTCTTTTC-AGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGAT
* ** * * *
2029549 -CAATGATATTGATGATTTTCTTTTGCATGAAAAT
123 AC-ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *
2029583 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATTGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2029648 CGTAACAATCTCCATTCTTTCCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATGCATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2029713 ACAGTGATGCTTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * * *
2029742 CTTTTTTTTCACTGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACA-CGAATAC
1 CTTTTCTTTCCCTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * * *
2029805 TTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGATA
64 TCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * *
2029867 CACGATATTGGTGCTTTCGTTTCGCAAGAAATG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * * * * * *
2029900 -ATGT-TTTCCCATGAAATGTTT-GTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAC
1 CTTTTCTTTCCC-T---ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** ** * ** * *
2029962 ACT-AGTTTTGATCTTCGTTTATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCTTC-TTCAAG
62 TCTCA-TAACAATC-TCCATTCTTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* * ** * * *
2030023 ATTAC-TGATGTTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* *
2030059 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2030124 CGTAACAATCTCCACTCTTTTAATGATT-GGATCCAAAAACACATTCTATTC-GTAAGGATACAT
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAA-GATACAT
* * * * *
2030187 GACAATGATGCTATGGTGTCGCAACAAAAG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * * ** *
2030217 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATAAATACT
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *** * * * *
2030281 TAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACAAAGTCTTCTCACTAGGATACA
65 CATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATACA
* * *
2030344 TGATATTGGTGCTTTCGTTTCGCAAGAAAGG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * *
2030375 C-TTT-TTTCCCATGAAATTTT-GTAAAGTCAAAATTTGTGCCTCAAATGAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
** * * * ** * * * *
2030437 CT-AGTTTCGATTTTCATTCATTTTGTGATTAGG--CACAACAAAAACATTCTCCTCTTTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATTGGGATC-CAA-AAACACATTCT-TTCATTAAGA-
* ** * * *
2030499 TA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * *
2030533 CTTTTCTTTGCCCTA--TTCCTTAAAATAAAAGTTCA-CCATTTAAATAAGACAAGCATCGATTC
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAACATCGATTC
* * * *
2030595 TCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTACGATACAT
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * * *
2030660 GACTA-TGGTGCTTTAGTGTCGTAAGAAAAG
127 GA-TATTGATGCTTTGGTTTCGCAAGAAAAG
** * ** * * *
2030690 CTTTT-TTTCCACCGTTTTT-TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATA
1 CTTTTCTTTCC-CTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * ** **
2030752 GTCAT-ACTAATCTCCATTTTTTTCGAGATTAGGCGCCATAAATGTAGCATTC--T-A-TAAGGA
63 CTCATAAC-AATCTCCATTCTTTTC-AGATTGGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * * **
2030812 TAGAT-ATATTAATGCTTTTGTTTCGCTAGAATGG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * * * *
2030846 C-TTTCTTCCCACCAATTTTTGC--GAAGTTAAAATTCGTGCCTCAAATAAGCCAAACATGGAAT
1 CTTTTCTT-TC-CCTATTTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
** **** * * * ** * * * *
2030908 -AAAGTTTTGATCTTCTTTCACTTTGTGATCAGGCA-CTATAAAA-ACATTCTCCTCA-TAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGAT-TGGGATCCA-AAAACACATTCT-TTCATTAAGA-
* ** * *
2030969 TA-ATGATATTGATGATTTTCTTTTGCACAG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2031003 CTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2031068 CACAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
2031133 ACTA-CGGTGTTTTGGTATCGCAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* ** ** * ** * ** **
2031162 CATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATCTGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * ** * *** * * **
2031226 TCGT-ACAATTCCCCATTGCGATAGCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGAT
64 TCATAACAA-TCTCCATT-C-TTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* *
2031289 ACACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * * * *
2031322 GTTTTTTTCTCACCAATTTTT-GTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACGTGGATA
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCGATT
**** ** * * *
2031385 CT-AGTTTTGATCTCCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCTCTTCTTTATGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
* * ** * * *
2031447 TA-ACGATATTGATGATTTTCTTTTGCATGAAAAT
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *
2031481 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2031546 CGTAACAATCGCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
2031611 ACAGTGATGCTTTGGTGTCACAAGAAAAA
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * *
2031640 CGTTT-TTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACA-CGAAT-
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCGATTC
* * * *** * * * *
2031701 ACATATACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
64 TCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2031764 AGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* *** *** * ** * * * * * *
2031798 CTGTTT-TCTCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGATA
1 CT-TTTCTTTC--CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * * *
2031861 CT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCAA
63 CTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-AA
* ** * * *
2031919 GATTAC-TGATATTGATGATTTTTTTTTTTTGCACTG-AAAT
120 GA-TACATGATATTGATG---CTTTGGTTTCGCA-AGAAAAG
* ** *
2031959 CTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2032024 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2032089 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2032118 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * *** * * **
2032180 CT--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACA-TTATCTTCTCACTCGG
63 CTCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACAT-TCTT-TCATTAAG
* * * * *
2032240 ATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATG
121 ATACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** *** * ** * * * * *
2032276 C-TGT-TTTCCGAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCC----CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * *
2032338 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * *
2032399 ATTA-ATGATATTAATGATTTTCTTTTGCAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2032435 CTTTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** * *
2032500 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACACG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2032565 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * *
2032593 CCTTT-TTTCCACTGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2032655 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* ** * *
2032717 ACATGATATTGGTGCTTTTATTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2032751 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2032813 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA
* ** * * *
2032875 TTA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* ** * ****
2032910 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2032975 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* *
2033040 A-ATATGGTGCTTTGGTGTT-GTAAGAAAAG
128 ATAT-TGATGCTTTGGT-TTCGCAAGAAAAG
* * ** * ** * **
2033069 CTTTTTTTTCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-C-A-AAT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * **
2033130 -AGT-ACTAATCTCCATTTTTTTCGAGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGGA
65 CA-TAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * * *
2033188 TACA-GATTTTAATGCTTTCGTTTTGC-CGAAAAGG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAA-G
* * * * * * ** * *
2033222 C-TTTCTTCCTACCAATTTTT-ATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCA-T
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* **** * * * * * *
2033284 C-AAGTTTTGATCTTCTTTCACTTTGTC--ATTAGGCA-CTATAAAA-ACATTCTCCTCAATAAG
63 CTCA-TAACAATCTCCATT--CTTT-TCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** *
2033344 ATTA-ATGATATTAATGATTTTCTTTCGCATA-AAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * **
2033380 CTTTTCTTTGCCCTATTTTCCTTGAAATCAAGGTTCATCCCTTAAATAAGACATGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2033445 CACAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * **
2033510 ACTA-TGGTGCTTTGGTATCGCGAGAAATT
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** ***
2033539 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAG
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * **
2033603 TCAT-ACAATTCCCCATTCTTTTCATGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTCA-GATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2033666 ACGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * * * *
2033697 GTTTT-TTTCTCACCAATTTTCGTAAGCTCAAAATTCATGCCTCAATTGAG-CTAGACGTGGATA
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCGATT
**** * ** * * * *
2033760 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCCTTCTTTATGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGAT
** * * ** * ** *
2033822 TGACGATATTGATGATTTTCTTTTGCTTGAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2033856 CTTTTCTTTGCCCTATTTTTCTTAAAATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2033921 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2033986 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * * *
2034015 CTTTT-TTTCCACT-GTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2034076 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * * *
2034138 AGATGTTATTGGTGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * * ** * * * * *
2034172 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTTAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * * * *
2034234 ACT-AGTTTTGATCTTCATTCATTTTACA-ATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* * ** * * * *
2034295 ATTA-ATGATATTAATGATTTTCTTTTGTAATAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * **
2034331 CTTTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATTAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ** *
2034396 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2034461 ACAGTGATG-TTTGGTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * * *
2034489 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2034551 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2034613 ACATGATATTGGTGCTTTTGTTTCGTAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * * *
2034647 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTAGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * *
2034709 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTACAAAA-ACATTCTCCTC-TTCAAG
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATT-AAG
* ** * ** *
2034770 ATTAC-TGATATTGATGATTTTCTTTTGCATTAAAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *
2034806 CTTTTCTTTGCCCTATTTTCCTAAAAAAT-GAAGTTCATCCCTTAAATAAGACAACCATCGATTC
1 CTTTTCTTT-CCCTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * * *
2034870 TCGTAATAATCTCCACT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATACAT
64 TCATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* * * * *
2034934 GACAATGATGCTATGCTGTCGCAAGAAACA-
127 GATATTGATGCTTTGGTTTCGCAAGAAA-AG
* ** * ** * * *
2034964 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * * *** * * * *
2035027 TTAT-ACTATTCCCCATTATTTTCAAGATTAGG--CACTTTAACTAAAGTCTTCTCACTAGGATA
64 TCATAAC-AATCTCCATTCTTTTC-AGATTGGGATC-CAAAAAC-ACATTCTT-TCATTAAGATA
* *
2035089 CATGATATTGGTGCTTTCGTTTCGCAAG-AAAG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * ** * * * * * * * * *
2035121 -GGTTCTTTCCCATGAAATTTT-GTAAGGTAAAAATTCGTGCCTCAAATAAGCCAAACGTGGATA
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * * ** * * * *
2035184 CT-AGTTTTGATCTTCATTAATTTTGTGATTAGGCACTACAAAAAC-CA-TCTCCTCTTTAAGAT
63 CTCA-TAACAATCTCCATT-CTTTTCAGATT-GGGA-TCCAAAAACACATTCT-TTCATTAAGA-
* ** * * * *
2035246 TA-ATGATATTGATGATTTTCTTTTGTACTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * ** * ****
2035280 CTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2035345 CGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * ** ** *
2035410 ACTATAG-TCACCATAAATGTAGCATTCTATAAGGATACAG
128 A-TATTGAT--GC-T---T-T-GGTTTC-GCAA-GA-AAAG
* ** * ** * ** ** ** * ** *
2035450 ATTTTAATGCTTTCGTTTCGCCGAAAA-C-ACTTTCTTCCTACCAATTTTTATAAAGTCAAA-AT
1 CTTTTCTTTCCCT-ATTTTTCTTAAAATCAAAGTTCAT-C--CC---TTAAAT-AAGACAAACA-
* * * * *** ** ****** *
2035512 TC-ATGC-CTTAA-ATAAC-CCAAACGTCGCATCA-AGTTTTGATCTTCTTTCAC-TT-TGTCAT
57 TCGATTCTCATAACA-ATCTCC--A-TTCTTTTCAGA-TTGGGATCCAAAAACACATTCTTTCAT
* * ** * * * ** *
2035570 TAGGCACTATAAAAACATT-CTCCTCAATAAGATT---AATGATATTAATG
117 TAAG-A-TA-CATGATATTGATGCT---TTGGTTTCGCAA-GA-A--AA-G
* * *** ** *
2035617 ATTTTCTTTCGCATAGAAATCTTTTCTT--TGCCCTA-TT--TTCCTTGAAATCAAAGTTCATCC
1 CTTTTCTTTC-CCT----AT-TTTTCTTAAAATCAAAGTTCATCCCTT-AAAT--AAG---A---
* * * *
2035677 CTTAAATAAGACAT-GCA-TCGATTCTCACAACAGTCTCCATCCTTTTCAAGATTGGGATCGAAA
51 C------AA-ACATCG-ATTC---T--CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAA
* * * * * * **
2035740 AACACATTCCCTTCACTAGGATACATGACTA-TGGTGCTTTGGTATCGCGAGAAATT
102 AACACATT-CTTTCATTAAGATACATGA-TATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * * ** **
2035796 CTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * * **
2035860 TCAT-ACAATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTGGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
*
2035923 ATGATATTGGTGCTTTGGTTTCGCAAG-AAAG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * * * * * * *
2035954 GTTTT-TTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAG-CTAGACGTGGATA
1 CTTTTCTTTC-C-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCGATT
**** * ** * * * *
2036017 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CCATAAAA-ACATTCCCTTCTTTATGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAGA-
* * * ** *
2036079 TA-ATGATATTGATGATTAT-CTTTTGCTTGAAAAT
122 TACATGATATTGATGCTT-TGGTTTCGCAAGAAAAG
* * * * * *
2036113 CTTTTCTTTGCCC-ATTTTTCTTAAAATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2036177 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2036242 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * * * * *
2036271 CTTTT-TTTCCACTGCTTTTGATAGAATCAAAGCTT-GTCTCTTAAATATGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * * * *
2036333 CTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2036395 AGACGATATTGATGCTTTCGTTTCGCAAGAAATG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2036429 C-TGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2036491 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-A-ATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* ** * *
2036549 AGATTAC-TGATATTGATGATTTTTTTTTTTGCGC-TG-AAAT
119 AGA-TACATGATATTGATG---CTTTGGTTT-CGCAAGAAAAG
* ** *
2036589 CTTTTCTTTGCTCTA-TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2036653 CGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACATATTTTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2036718 ACAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * *
2036747 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCTTAAATAAGACAAACA-CGAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATCG-ATT
* * *** * * * *
2036809 CT--TAGACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCACTAGGA
63 CTCATA-ACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGA
* * * * *
2036870 TAGATGATATTGGTGCTTTCGTTTTGCAAGAAATG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * ** * * * * *
2036905 -TTGT-TTTCCCAAGAAATTTTT-TTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * * *
2036967 ACT-AGTTTTGATCTTCATTCATTTTGC-GATTAGGCA-CTATAAAA-ACATTCTCCTT--TTCA
62 TCTCA-TAACAATCTCCATTC-TTTT-CAGATT-GGGATCCA-AAAACACATTCT--TTCATT-A
* * ** * ** *
2037026 AGATTA-TTGATATTGATGATTTTTTTTTTGCGTTG-AAAT
119 AGA-TACATGATATTGATG-CTTTGGTTTCGC-AAGAAAAG
* ** *
2037065 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGGATCTATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2037130 CGTAACAATCTCTATTCTTTTCATGATTGGGATCCAAAAGCACATTCTATTCAATAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2037195 ATAGTCATGCTTTGCTATCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * * * *
2037224 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAACTT-GTCTCTTAAATAAGACAGACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * * * *** * * *
2037286 CTTAT-ACTAT-TCCCTACTCTTTTCAAGATTAAGCA-CTTTAAACATAGTCTTCTC-TCTAGGA
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCAT-TAAGA
* * *
2037347 TAC-TGGATATTGGTGCTTTCGTTTCGCAAGAAATG
122 TACAT-GATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * *** * * * * * ** *
2037382 C-TGT-TTTCCCAAGAAATTTTT-GTATGGTCAAAATTCATACCTCAAATGAGCCAAATGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
* **** * ** * * * *
2037444 ACT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA
* * * *
2037506 TTGC-TGATATTGATGATTT--TCTTCTGCATTG-AAAT
122 -TACATGATATTGATGCTTTGGT-TTC-GCA-AGAAAAG
* * *
2037541 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2037606 CCTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTTTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTC-TTTCATTAAGATACATG
* * * *
2037671 ACAATGATGCTATGGTGTT-GCAACAAAAG
128 ATATTGATGCTTTGGT-TTCGCAAGAAAAG
** ** * ** * * * *
2037700 CTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATTAGACAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * * * * * ** *
2037763 TTAT-ACTATTCCCCATTCTTTTCAAGTTTAGG--CACATTAAACAAAGTCTTCTCGCTAGGATA
64 TCATAAC-AATCTCCATTCTTTTC-AGATTGGGATC-CA-AAAACACATTCTT-TCATTAAGATA
* * * *
2037825 CATGATATTGGTGCTTTCGTTTCACAAGAAAGG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * ** * * * * *
2037858 C-TTT-TTTCCCATGAAATTTT-GTAAGGTCAAAATTTGTGCCTCAAATGAG-CTAAACGTGGAT
1 CTTTTCTTTCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCGAT
* ***** * ** * * * * *
2037919 ACT-AGTTTTGGTATCCATTCATTTTGTGATTAGG-TACTATAAAA-ACTTTCTCCTCTTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATTGGGAT-CCA-AAAACACATTCT-TTCATTAAGA
* * * * ** *
2037981 TTA-TTGATATTGATGATTCT-CTTTTGCGTTG-AAAT
122 -TACATGATATTGATGCTT-TGGTTTCGC-AAGAAAAG
* * * ** * *
2038016 TTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAGACAAGCATTGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * *
2038081 CATAACAATCTCCATTCTTTTCAACATTGGGATCCAAAAACACATTTTATTCATTACGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * *
2038146 ACAGTAATGCTTTGGTGTCGTAACAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** ** * **
2038175 CTTTT-TTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATAG
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * **
2038238 TCAT-ACTAATATCCATTTTTTTCGGGATTAGGCA-CCATAAATGTAGCATTC--T-A-TAAGGA
64 TCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCA-AAA-ACA-CATTCTTTCATTAA-GA
* * * *
2038297 TACA-AATATTAATGCTTTTGTTTCGCAAGAAATG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * ** * *
2038331 C-TTTCTTCCCACCAATTTTT-GTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAATGTGGAATC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * ** * * * * *
2038394 T-AGTTTTGATCT-TATTCACTTTGTGATTAGGCA-CTATAAAA-ATATTCTCCTCATTAATAGT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* ** ** * * *
2038455 A-ATGATATTGATGATTTTCTTTTACATGGAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2038488 CTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTACGTCCCTTAATTAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * * *
2038553 CGCAACAATCTCCATTCTTTCCTAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * * *
2038618 ACT-TTGGTGCTTTGGTGTCGTAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* ** ** * ** * *
2038647 TTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAACT-AGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAA-TAAGACAAACATCG-ATT
* * * * * * *** * * ** *
2038710 CTTAT-GCTATTCTTCATTCTTTTTAAGATTAGGCA-CTTTAAACAAAGTCTTCTCGCTAGGATA
63 CTCATAAC-AATCTCCATTC-TTTTCAGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
* * * ** *
2038773 CATGATATTGGT-TTGTTCGTTTCATAAGAAAGG
124 CATGATATTGATGCT-TTGGTTTCGCAAGAAAAG
* * * * * * * * * ****
2038806 C-TTT-TTTCCAATAAAATTTTT-GTAAAGTCAAAATTCGTACCTCAATTAAGCCAAATGGGGAT
1 CTTTTCTTTCC-CT---ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
**** * * ** * * ** * *
2038868 TCT-AGTTTTGATCTTCACTCATTTTGTGATTAAGCA-CTGTAAAA-ACA-TCTCCTCGTTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATC-CAAAAACACATTCT-TTCATTAAGA
* ** * *** *
2038929 TTA-ATGATATTGAT-TTTTTTTTTGGGCGTTAAAAT
122 -TACATGATATTGATGCTTTGGTTT-CGCAAGAAAAG
* * * *
2038964 CTTTTCTTTACCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATATGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * ** * *
2039029 CGTAACAATCTCCTTTGGTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGAGACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2039094 ACAGTGATGCTTTGGTATCGCAAGAAATG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *** * * ** * *
2039123 CTTTT-TGTTGCC-GTTTTGGATAGAATCAAACTTGTTCTCTTAAATAAGACAAACAT-GAATAC
1 CTTTTCT-TTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * ** ** *
2039185 TC-TTACTAGTC-CCTATTTTTTTCAAGATTAGGCA-CCTTAAACACAGCCTTCTC-GTAAGGAT
64 TCATAAC-AATCTCC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAA-GAT
* * * *
2039246 ACACGATATTGACAG-TTTCGTTTCACAAG-AAAG
123 ACATGATATTGA-TGCTTTGGTTTCGCAAGAAAAG
* * * * * ** ** * * * * *
2039279 GTTTTCTTCCCACCAATTTTT-GTAAAGTCAAAGTTTGTAACTCAAATGAGCCAAACGTGGATTC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
** * * * * * * * * *
2039343 T-AGTTTCGATCTTCACTCATTTCGTGATT--AAGCACAGCAAAA-ACATTCTCCTCGTTAAGAC
64 TCA-TAACAATCTCCATTCTTTTC-AGATTGGGATC-CA--AAAACACATTCT-TTCATTAAGA-
* ** ** * ** *
2039404 TA-ATGATGTTGATTATTTTTTTTTTGCGTTG-AAAT
122 TACATGATATTGA-TGCTTTGGTTTCGC-AAGAAAAG
* * *
2039439 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2039504 C-TCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATGCTT
65 CAT-AACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACAT
* * * *
2039568 GACT-TTGATGCTTTGG-TGCACATGAAATG
127 GA-TATTGATGCTTTGGTTTCGCAAGAAAAG
* ** ** * * * * * ** **
2039597 TTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACAT-GAAAAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * *** * *
2039661 TCAT-ACAATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACACAGTCTTCTCATTAGGATAC
64 TCATAACAA-TCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
*
2039724 ACGATATTTG-TGCTTTGGTTTCGCAAG-AAAG
125 ATGATA-TTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * ** * * * *
2039755 ACTTTT-TTCCCACCAATATTT-ATGAAGTCAAAATTCATGCCGCAAATGAGCCAAACGTGGATT
1 -CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * ** *
2039818 CT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTGTAAAA-ACATTC-TCCTATTTAAGA
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATC-CAAAAACACATTCTTTC-A-TTAAGA
* ** ** *
2039879 TTA-ATGATATTGATGATTTTCTTTTC-CGTGAAAAT
122 -TACATGATATTGATG-CTTTGGTTTCGCAAGAAAAG
* * *
2039914 ATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * * *
2039979 CACAACAATCTCCATTCCTTTCAAGATTGGGATTCAAAAACATATTCTGTCCATTAGGACACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2040044 ACAATAATGCTTTGGTGTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * ** * * *
2040073 CTTTT-TTTTCATCGTTTTTAATAGAATCAAAGTTGGTCTCTTAAATCAGACAAACAT-GAATAC
1 CTTTTCTTTCCCT-ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * *** * * * *
2040136 TCGT-ACTATTTCCCATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCCCATTAGGATAC
64 TCATAACAATCT-CCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* *
2040199 ACGATATT-AGTGCTTTGGTTTCTCAAG-AAAG
125 ATGATATTGA-TGCTTTGGTTTCGCAAGAAAAG
* * * * ** * * * *
2040230 GTTTT-TTTCCCACCAATTTTT-GTAAAGTCAAAGTTTGTGCCTCAAATGAGCCAAACAT-GAAT
1 CTTTTCTTT--C-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT
* * **** * ** * * * *
2040292 TTTTAGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACGTTCTCCTCATTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA
* * ** * * * *
2040355 TTA-ATGATAATGATGATTTTCTTTTGCACGGAAAT
122 -TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *
2040390 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-ACCTTAAATAAAACAAGCATCGATTAT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * * * *
2040454 TGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACCCATTCTGTTGATTAGGATATATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
*
2040519 ATAGTGATGCTTTGG-TTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * ** *
2040547 CTTTTTTTTTGCCGT-TTTTT-ATAAAATCATAGCTGGTCTCTTAAATCAA-ACAAACAT-GAAT
1 C-TTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAACATCG-AT
* * * * *** ** * ** *
2040608 ACTCAT-ACTATTTCCCATTCTTTTCAAGATTAGGCA-CTTTAAACGTAGTCTTTTTGTTAGGAT
62 TCTCATAACAATCT-CCATTCTTTTC-AGATT-GGGATCCAAAAACACATTC-TTTCATTAAGAT
* * *
2040671 ACACGATATTGGTGCTTTGGTTTCGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * *
2040705 CTTTT-TTCCCACTAATTTTT-GTAAAATCAAAATTCATGCCTAAAATGAGCCAAACGTGGATTC
1 CTTTTCTTTCC-CT-ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * ** * * *
2040768 T-AGTTTTGATTTTCATTCATTTTGTGATTAGGCA-CTACAAAA-ACATTCTCCTCATTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* * ** * ** *
2040830 A-ATGATGTTGATGATTTTCTTTTGCATTAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * *
2040863 CTTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCCTGAATAAGACAAGCATCGATT
1 C--TTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
* ** * *
2040928 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCGTCATTAGGATAAA
63 CTCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACA
* * *
2040993 TGGA-ATTGATGCTTTGGTGTCGCAAGACATG
126 T-GATATTGATGCTTTGGTTTCGCAAGAAAAG
** * ** * *
2041024 CTTTTCTTTCTACCGT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACAT-GAAT
1 CTTTTCTTTC--CC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT
* * * * * * * * * * *
2041087 GCTTAT-ACTATTCCCCATTCTTTTCAACATTAGGCACTTC--AAACATAGTCTTCTCACTATGA
62 TCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGA-TCCAAAAACACATTCTT-TCATTAAGA
* *
2041149 TACACGATATTGGA-GCTTTGGTTTCGCAAGAAAGG
122 TACATGATATT-GATGCTTTGGTTTCGCAAGAAAAG
**** * * * * * * * * * *
2041184 CTTTT-TTCTAAAGAAATTTT-TGAAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATT
1 CTTTTCTT-T-CCCTATTTTTCTTAAAA-TCAAAGTTCATCCCTTAAATAAGACAAACATCGATT
**** * ** * * *
2041247 -TCAGTTTTGATCTTCATTCATTTTGTGATTAGG--CACAATAAAAACATTCTCCTCATTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATTGGGATC-CAA-AAACACATTCT-TTCATTAAGA-
* ** * *** *
2041309 TA-ATGATATTGATGATTTTCTTTTGTGTTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCG-CAAGAAAAG
* * * *
2041343 CTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCGTCCCTTAAATAAGACAAGCATCGATTC
1 C-TTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
** * * *
2041408 TCGCAACAATCTCCATTGTTTTCAAGATTGGGATCAAAAAACACATTCCCTTCATT-AGAATACA
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAG-ATACA
* * *
2041472 TGACT-TTAATGCTTTGGTGTT-GCAACAAATG
126 TGA-TATTGATGCTTTGGT-TTCGCAAGAAAAG
* ** * * * **
2041503 CTTTCCTTT--CTACCGTTTCTGATAGAATCAAAGTTTATCTCC-TAAGTCTGACAAACAT-GAA
1 CTTTTCTTTCCCTA-TTTTTCT--TAAAATCAAAGTTCATC-CCTTAAATAAGACAAACATCG-A
* * * *** * * * *
2041564 TACTCAT-ACTAATCTCCATTCCTTTCAAGATTAGGCA-CTTTAAAGATAGTCTTCTCATTAGGA
61 TTCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGA
* * *
2041627 TACATGATATTGGTGCTTTGGTTTTGTAAG-AAAG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * * * * *
2041661 ----------------GTT-GTAAGGTCAAAATTCGTGCCTCAAATAAGCCAAACGTGGATTCTA
1 CTTTTCTTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC
* *** * * ** * * *
2041709 GTATTGATCTTCATTCACTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGATTA-A
66 ATAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-TACA
* * ** * *
2041771 CGATATTGATGATTTTCTTTCGCATGAAAAT
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *
2041802 CTTTTC-TTCGCCTTATTTTCCTTAAAATCAAAGTTAATCGCTT-AA-AAGACAAGCATCAATTC
1 CTTTTCTTTC-CC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
*
2041864 TCATAACAATCTCCATTCTTTTCATGTTTGGGATCCAAAAACACATTCTATTCATT-AGAATACA
64 TCATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAG-ATACA
* * * *
2041928 TGACAGTGATGGTTTGGTGTCGCAAGAAAAG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * *
2041959 CTTTT-TTTCCACTATTTTT-TATAGAATC-AAGTTTGTCTCTTAAATAAGACAAACAT-GTATA
1 CTTTTCTTTCC-CTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * * * ** * * * **
2042020 CTTAT-ACTATTTCCCATTCTTTTAAAGATT-AGA-CACTTTAAACATAGTCTTGTCACTCGGAT
63 CTCATAACAATCT-CCATTCTTTT-CAGATTGGGATC-C-AAAAACACATTCTT-TCATTAAGAT
* * * * * *
2042082 ACATGATATTGGTACTTTGGATTCACAGGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * *
2042116 CTTTT-TTCCCACCAATTTTT-GTAAAGT-ATAAGTTC-GCACCTCAAATGAGCCAAACGTGGAT
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCA-AAGTTCATC-CCTTAAATAAGACAAACATCGAT
*** ** * * *
2042177 TCT-AGTATTGATCTCCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGA
62 TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA
* * * *
2042239 TTA-ATGATATTGATGATTTTCGTTT-GCATTG-AAAT
122 -TACATGATATTGATG-CTTTGGTTTCGCA-AGAAAAG
* ** *
2042274 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2042339 CATAACAATCTCC-TCCTTTTCAAGATTGAGATCCAAAAACACATTTTATTCATTAGGATACATA
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * *
2042403 ACAGTGATGCTTTGGTGTCGAAAGAAAAA
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * ** ** * * **
2042432 CTTTT-TTTCCACCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATATGACAAACAT-GAATAG
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * ** * * *** * * *
2042495 TCAT-ACTAATCTCCGGTTTTTTTGGGATTAGGCA-CCATAAATGTA-GCCTTCTATAAAGATAC
64 TCATAAC-AATCTCC-ATTCTTTTCAGATT-GGGATCCAAAAACACATTCTTTC-ATTAAGATAC
** * *
2042557 A-GATATCAATGCTTTTGTTTCGCAAGAAAGG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * * * *
2042588 C-TTTCTTCCTACCAATTTTT-GTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAACGTAGAATC
1 CTTTTCTT--TCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * ** * * * * *
2042651 T-AGTTTTGATCTTCATTCACTTTGTGATTAGGAACTATAAAA-TCATTCCCCTT-ATTAAGATT
64 TCA-TAACAATCTCCATTC-TTTTCAGATTGGGATCCA-AAAACACATT--CTTTCATTAAGA-T
* * * * *
2042713 A-ATGATATTGATGATTTGCTTTCGCATGGAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * *
2042746 CTTTTCTCTGCCCTATTTTCCTTAAAATCAAAGTACCA-CCCTTAATTAAGACAAGCATCGATTC
1 CTTTTCT-TTCCCTATTTTTCTTAAAATCAAAGT-TCATCCCTTAAATAAGACAAACATCGATTC
* * *
2042810 TCACAACAATCTCCATTCCTTTCAAGATTGGGATCC-AAAACACATTCCCTTT-ATTAGGATACA
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT--CTTTCATTAAGATACA
* * * *
2042873 TGACT-TTGGTGCTTTGGTGTCACAAGAAATG
126 TGA-TATTGATGCTTTGGTTTCGCAAGAAAAG
** * ** * * * *
2042904 CTTTTCTTTCCACCGTTTCTGATAGAATCAAAGTT--TGCCTCTTAAATCAGAAAAACAT-GAAA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAACATCG-AT
* * * * *** * * *
2042966 ACTCAT-ACTATTCTCCCATTATTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTAGGA
62 TCTCATAAC-AATCT-CCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGA
* * *
2043029 TACACGATATTGGTGCTTTGGTTTTGCAAG-AAAG
122 TACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * ** * * * * * ** *
2043063 GTTTT-TTTCCCACCAATTTTT-GTAAGGTCAAAATTCATGCCTCAAATGAG-CTAGATGTGGAT
1 CTTTTCTTT--C-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAACATCGAT
* ** **** * ** * *
2043125 ACTGGTTTTGATCTTCATTCATTTTGTGATTAGG--CACATAAAA-ACATTCTCTTCTTTAAGAT
62 TCTCATAACAATCTCCATTC-TTTTCAGATTGGGATC-CA-AAAACACATTCT-TTCATTAAGA-
* * * ** * * *
2043187 TA-ACGATATTGAAGATTTTCTTTTGCATTG-AAAT
122 TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * * * *
2043221 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTGATCCCATAAATAAGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2043286 CGTAACAATCTCCATTCTTCCTAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTT-TTCAGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2043351 ACAGTGAAGCTTTGGTGTT-GCAAGAAAAG
128 ATATTGATGCTTTGGT-TTCGCAAGAAAAG
* ** ** * * *
2043380 CTTTT-TTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTGAAACT-AGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAA-TAAGACAAACATCG-ATT
* * * * * * * *
2043442 CTTAT-ACTAT-TCCCTATTCTTTTTATGATTAGG--CACATTAAACAAAGTCTTCTCATTAGGA
63 CTCATAACAATCT-CC-ATTCTTTTCA-GATTGGGATC-CA-AAAACACATTCTT-TCATTAAGA
* * * * *
2043503 TACACGATATTGGTTCGTTT-GTTTCGAAAGAAAGG
122 TACATGATATTGATGC-TTTGGTTTCGCAAGAAAAG
* * * * ** * * * * *
2043538 C-TTT-TTTCTCATGAAATTTTT-GTAAAGTCAAAATTTGTGCCTCAAATGAGCCAAACATGGAT
1 CTTTTCTTTC-CCT---ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
** * * * * * * * * *
2043600 TCTTTTGATC-TTCACCCATT-TTGT--GATTAAGCA-CTATAAAA-ACA-TCTCATCGTTAAGA
62 TCTCAT-AACAATC-TCCATTCTTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA
** * ** *
2043658 TTA-ATGATATTGAT--TTTTTTTTTGCGTTG-AAAT
122 -TACATGATATTGATGCTTTGGTTTCGC-AAGAAAAG
* * *
2043691 CTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * ** * * *
2043756 CGTAACAATCTCCAATGGTTTCAAGATTGGAATCAAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2043821 ACAGTGATGCTTTGGTATCGTAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * *
2043850 CTTTT-TTCTGTCGT-TTTTT-ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAT-GAATA
1 CTTTTCTT-T-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * *** * ** *
2043911 CTC-TTACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGCCTTCTC-GTAAGGA
63 CTCATAACAATCT-CC-ATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAA-GA
* * *
2043972 TACATGATATTGACAG-TTTCGTTTCACAAG-AAAG
122 TACATGATATTGA-TGCTTTGGTTTCGCAAGAAAAG
* * * * * ** * * * * * *
2044006 GTTTTCTTTCCACCAATTTTT-GTAGAGTCAAAGTTTGTGCCTCAAATGAGCCAAACGTGGATTC
1 CTTTTCTTT-C-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
** * * * * * *
2044070 T-AGTTTCGATCTTCACTCATTTCATGATT--AAGCACAGTAAAA-ACATTCCCCTTGTCA--AA
64 TCA-TAACAATCTCCATTCTTTTCA-GATTGGGATC-CA--AAAACACATT---CTT-TCATTAA
* ** * **
2044129 -ACTA-ATGATATTGAT-TTTTTTTTTTGCGTTGAAATA-
120 GA-TACATGATATTGATGCTTTGGTTTCGC-AAGAAA-AG
* * * ***
2044165 -TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCTTTAAATAAGACAAGTGTCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
*** *
2044229 TGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTGTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * *
2044294 ACAGTGATGCTTTGGTGTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * ** * **
2044323 CTTTTTATTTCGTCGT-TTTTT-ATAGAATCAAAGTTGGTCTCTTAAATCTGACAAACAT-GAAT
1 C-TTTTCTTTC--CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT
* * * * * *** * * * *
2044385 ACTCGT-ACTATTCCCCATTCTTTTCAGGATTAGGCA-CTTTAAACATAGTCTTCCCATTAGGAT
62 TCTCATAAC-AATCTCCATTCTTTTCA-GATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2044448 ACACGATATTGGTGCTTTGGTTTCTCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * *
2044482 CTCTTT-TCCTACCAATTTTT-GTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACAT-GAATT
1 CT-TTTCT-TTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * **** * * ** * * *
2044544 TTTAGTTTTGATGTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGAT
63 CTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-
* * * *
2044607 TA-ATGATATTGATGATTT--TCTTCTGCATGGAAAT
122 TACATGATATTGATGCTTTGGT-TTC-GCAAGAAAAG
* * * *
2044641 CTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTTAT-CCTTAAATAAGACAACCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * *
2044705 TGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAATACATTCTGTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
*
2044770 ATAGTGATGCTTTGG-TTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * ** * * *
2044798 CTTTTTTTTGCCGT-TTTTT-ATAGAATCATAGCTGGTCTCTTAAATCAGACAAACAT-GAATAC
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * ** * * * *
2044860 TCAT-ACTATTTCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTATTC-TT-ATTAGGATA
64 TCATAACAATCT-CCATTCTTTTC-AGATT-GGGA-TCCAAAAACA-CATTCTTTCATTAAGATA
* * *
2044922 CATGATATGGGTGCTTTGGTTTCGCAAGAAAGG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * * * * * * *
2044955 CTCTTT-TCCCACCAATTTTT-GTAAAGTCAAAATTCATACCTAAAATGAGCCAAACGTGGATTC
1 CT-TTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * * ** ** * * *
2045018 T-AGTTTTGATTTTCACTGATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCATTAAGATT
64 TCA-TAACAATCTCCA-TTCTTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-T
* * ** * ** *
2045080 A-ATGATGTTGATGATTTTCTTTTGCATTAAAAT
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * **
2045113 CTTTTTTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCCTAAATAAGACAAGTATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2045178 AATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACATATTCCCTTCGTTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
** * *
2045243 GCATTGATGCTTTGGTGTCGCAAGACAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
** * ** * *
2045272 CTTTTCTTTACACCGT-TTTTTGATAGAATCAAAGTTTGTCTCATAAATAAGACAAACAT-GAAT
1 CTTTTCTTT-C-CC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT
* * * * * * * *** * * * *
2045335 TATTAT-ACTATTCCCCATTCCTTTCGACATTAGGCA-CTTTAAACATAGTCTTCTCACTATGAT
62 TCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGAT
* * * *
2045398 ACACGATATTGGTGCTTTGGTTTTGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
** * * * * * ** * * *
2045432 C-TTT-TTTCACAAGAAATTTT-TGAAAAGTCAAAATTCGTGCCTCGAATGAG-CTAAACGTGGA
1 CTTTTCTTTC-C--CTATTTTTCTTAAAA-TCAAAGTTCATCCCTTAAATAAGAC-AAACATCGA
** * * * ** * *
2045493 TT-TCAGTTTCGATCTTCAATCATTTTGTGATTAGG--CACAATAAAAACATTCTTCTCATTAAG
61 TTCTCA-TAACAATCTCCATTC-TTTTCAGATTGGGATC-CAA-AAACACATTCTT-TCATTAAG
* ** * *** *
2045555 ATTA-ATGATATTGATGATTTTCTTTTGTGTTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCG-CAAGAAAAG
* * *
2045591 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCGTCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * * * *
2045656 CGCAACAATCTCCATTGTTTTCAAGATTGGGATCAAAAAACACATTCCCTTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
* * *
2045721 ACT-TTAATGCTTTGG-TGCAGCAAGAAATG
128 A-TATTGATGCTTTGGTTTC-GCAAGAAAAG
* ** * ** * ** * * * * *
2045750 CTTTCCTTTCCACCGTTTCTGATAGAATCAAAGTTTTTCTCTCAAGTCTA-ACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAACATCG-ATT
* * *** * * *
2045813 CTCATACCAATCTCCATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTCTCATTAGGATAC
63 CTCATAACAATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATAC
* * *
2045877 ATGATATTGGTGCTTTGGTCTCGCAAGAAAGG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * ** * * * * * * * *
2045909 TTTTTATACCACCAATTTTT-GTAAGGTCAAAATTCTTGCCTCAAATGAGCCAAACGTGGATTCT
1 CTTTTCTTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
*** * * ** * * * *
2045973 -AGTATTGATCTTCATTCACTTTGTGATTAGGCA-CTATAAAA-ATATTCTCCTCATTAAGATTA
65 CA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAGA-TA
* ** * *
2046035 -ATGATATTGATGATTTTCTTTCG-ATGAAAAT
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * **
2046066 CTTTTCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCGCTTAAATATGACAGGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2046131 CATAACAATTTCCATTCCTTTCAAGTTTCGGATCCAAAAACACAATCTATTCATT-AGAATACAT
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAG-ATACAT
* * * *
2046195 GACAGTGATGGTTT-GTTGTTGCAAGAAAAG
127 GATATTGATGCTTTGGTT-TCGCAAGAAAAG
* ** * ** * *
2046225 CTTTT-TTTCCATTATTTTTGATAGAATC-AAGTTTGTCTCTTAAATAAGACAAACAT-GTATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * * *** * * * *
2046287 TTAT-ACTATTCCCCATTCTTTTTAAGATTAGG-TACTTTAAACAAAGTCTTCTCACTAGGATAC
64 TCATAAC-AATCTCCATTC-TTTTCAGATTGGGAT-CCAAAAACACATTCTT-TCATTAAGATAC
** * * * ** * *
2046350 ACAATATTGGTTCGTTCATTTCGTAAGAAAGG
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * ** * * *
2046382 C-TTT-TTTCCCATGAAATTTTT-TGTAAAGTCAAAATTCGTGCCTCAAATGTGCCAAACGTGGA
1 CTTTTCTTTCCC-T---ATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGA
**** * ** * * * *
2046444 TTCT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCCCTTCTTTAAG
61 TTCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATT-CTTTCATTAAG
* ** * * *
2046506 ATTA-ATGATATTGATGATTTTCTTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* * *
2046542 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT--A-AAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
** * ** *
2046604 TGTAACAATCTCCATTCTTTCCATTTTTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCA-GATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * *
2046669 AGAGTGATGCTTTGGTGTCACAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * *
2046698 CTTTT-TTTGCTCTGTTTTTGATAGAATCAAAGTTTATCTCC-TAAACT-TGACAAACAT-GAAT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATC-CCTTAAA-TAAGACAAACATCG-AT
* * * * * *** * *
2046759 ACTTAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTT-TTCTCACT-AGA
62 TCTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACA-TTCTT-TCATTAAG-
* * ** *
2046820 ATACATGATATTGGTGCTTTTGTTTTACAAGAAAGG
121 ATACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * * * * *
2046856 C-TTT-TTTCCCAAGAAATTTTT-GTAAGGTTAAAATTCGTGCCTCAAATGAGCCAAACATGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
**** * ** * * * *
2046918 AT-T-AGTTTTGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTCTTTAAG
62 -TCTCA-TAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT-TTCATTAAG
* ** * * *
2046979 ACTA-ATGATATTGATGATTTTATTTTGCATTG-AAAT
121 A-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAAG
* *
2047015 CTTTTCTTTGCCCAATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2047080 CGTAACAATGTTCATTCTTTTCAAGATTGGGATCCAAAAATACAATT-TATTCATTAGGATACAT
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACAC-ATTCT-TTCATTAAGATACAT
* * * *
2047144 GACAGTGATGCTTTGGTGTCACAAGAAAAG
127 GATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * * * * *
2047174 CTTTT-TTTCCACCATTTTTGATAGAATCAAAGGTT-GTCTCTTAATTAAGACAAACAT-GAATA
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAA-GTTCATCCCTTAAATAAGACAAACATCG-ATT
* * * * *** * * * *
2047236 GTCAT-ACTATTCCCCATT-TTCTTCAAGATTTGG-TACTTTAAACATAGTCTTCTCACTAGGAT
63 CTCATAAC-AATCTCCATTCTT-TTC-AGATTGGGAT-CCAAAAACACATTCTT-TCATTAAGAT
* * * *
2047298 ACACGATATTGGTGCTTTGGATTCGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * *
2047332 CATTT-TTCCCACTAATTTTT-ATAAAGTCTAAGTTC-GCGCCTCAAATAAGCCAAACGTAGAAT
1 CTTTTCTTTCC-CT-ATTTTTCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAACATCG-AT
** * ** * *
2047394 T-TAGCAT--TGATCTTCATTCATTTTGTGATTAGGCA-CTATAAAA-ACATTCTCCTT-ATTAA
62 TCT--CATAACAATCTCCATTC-TTTTCAGATT-GGGATCCA-AAAACACATTCT--TTCATTAA
* ** * *
2047453 GATTA-ATGATATTGATGATTTTCCTTT-GCATTG-AAAT
120 GA-TACATGATATTGATG-CTTTGGTTTCGCA-AGAAAAG
* * * *
2047490 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCAATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2047555 CACAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTCCCTTCATTAGGATACC
65 CATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACA--TT-CTTTCATTAAGATACA
** * * * *
2047620 TGGCATTGATGCTTTGATATCGTAAGAAATG
126 TGATATTGATGCTTTGGTTTCGCAAGAAAAG
** ** * ** * *
2047651 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGTGC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGA-TTC
** * * * * *** * * *
2047715 TTGT-GCTAT-TCCCTATTCTTTTGAGGATTAGGCAT-TTTAAGCA-TTGTCTTCTCATTAGGAT
64 TCATAACAATCT-CC-ATTCTTTTCA-GATT-GGGATCCAAAAACACAT-TCTT-TCATTAAGAT
** * * * *
2047776 ACGCGATACTGGTGCTTTGGTTTTTCTCAAGAAAGG
123 ACATGATATTGATGCTTTGG--TTTCGCAAGAAAAG
* * * * * * * * * * *
2047812 CTTTT-TTCTCACCAATTTTT-GTAAAGTCTAACTTC-GCGCCTCAAATGAGTCAAGCGT-GATT
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAACATCGATT
*** * * ** ** *
2047873 CT-ACTATTGATTTTCATTCATTTTGTGATTCTG-T---AAAA-ACATTCTCCTCATTAAGATTA
63 CTCA-TAACAATCTCCATTC-TTTTCAGATTGGGATCCAAAAACACATTCT-TTCATTAAGA-TA
* ** * *
2047932 -ATGATATTGGA-GATTTTCTTTCGC-AGTGAAAT
124 CATGATATT-GATGCTTTGGTTTCGCAAG-AAAAG
* * * *
2047964 CTTTTCTTTGTCCTATTTTCCCTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * *
2048029 CGTAACAATCTCCATTGTTTTTAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
65 CATAACAATCTCCATT-CTTTTCAGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACATG
* * * * * *
2048094 ACAGTGATACATTCGTGTCGCAAGAAAAG
128 ATATTGATGCTTTGGTTTCGCAAGAAAAG
* ** * ** * * *
2048123 CTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACAT-GAATAC
1 CTTTTCTTTCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * *** * * * **
2048186 TTAT-ACTAT-TCCACTTTCTTTTCCAGATTAGGCA-CTTTAAACATAGTCTTCTCACTGTGATA
64 TCATAACAATCTCCA--TTCTTTT-CAGATT-GGGATCCAAAAACACATTCTT-TCATTAAGATA
** * * * * * *
2048248 CGCGATATTGGTACTTTGGTTTCACATGGAAGG
124 CATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * ** *
2048281 C-TTT-TTTCCCAAGAGATTTTT-GTAAAGTCAAAATTCGTACCTCAAATGAGCCAAATGTGGAT
1 CTTTTCTTTCCC----TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT
** * * ** * * *
2048343 TCT-AGTTTTC-ATCTTCATTTATTTTGTGATTAGG--CACAATAAAAACATTCTCTTTATTAAG
62 TCTCA--TAACAATCTCCA-TTCTTTTCAGATTGGGATC-CAA-AAACACATTCT-TTCATTAAG
* * ** * *** *
2048404 ATGA-ATGATATTGTTGATTTTCTTTTGTGTTG-AAAT
121 AT-ACATGATATTGATGCTTTGGTTTCG-CAAGAAAAG
* * *
2048440 CTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTACATCCCTTAAATAAGACAAGCATCGATTGT
1 CTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
*** * * * * * *
2048505 CGCGACAATCTCCATTATTTTCAAAGTTGGAATCAAAAAACACATTCCATTCATTAGGATACATG
65 CATAACAATCTCCATTCTTTTCAGA-TTGGGATCCAAAAACACATT-CTTTCATTAAGATACATG
** *
2048570 ACT-TTGATGCTTTGGTGCCGCAAGAAATG
128 A-TATTGATGCTTTGGTTTCGCAAGAAAAG
* * ** * * * * *
2048599 CTTTCCTTTTCACC-ATTTCTGATAGAATCAAAGTTTATCTCTTAAATCAGACAAACAT-GAATG
1 CTTTTC-TTTC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * *** * * *
2048662 CTCAT-ACTATTCTCCATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTT-TTCTAATTAGGAT
63 CTCATAAC-AATCTCCATTCTTTTC-AGATT-GGGATCCAAAAACACA-TTCTT-TCATTAAGAT
* *
2048724 ACATGATATTGGTGCTTTGGTTTCGCAAGAAAGG
123 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * * * * * * * * *
2048758 CTTTT-TTCTCACCAATTTTT-GTAAAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATTC
1 CTTTTCTT-TC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
**** * ** * * * *
2048821 -CAGTTTTGATCTTCATTCATTTTGTGATTAGG--CACTATAA-A-A-----TCA--AAGTTTA-
64 TCA-TAACAATCTCCATTC-TTTTCAGATTGGGATC-CAAAAACACATTCTTTCATTAAG-ATAC
* ** * * *
2048873 ATGATATTGATGATTTTCTTTGGCATGAAAAT
125 ATGATATTGATGCTTTGGTTTCGCAAGAAAAG
* * *
2048905 CATTTCTTTGCCCTA-TTTTCGTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTC
1 CTTTTCTTT-CCCTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * * * ***
2048969 TCGTAACAATCTCCACTCTTTTCAAGGTTGGGATCCAAAAGCACATTCTATTAATCGGGATACAT
64 TCATAACAATCTCCATTCTTTTC-AGATTGGGATCCAAAAACACATTCT-TTCATTAAGATACAT
* *
2049034 GACT-GTGATGCTTTGGTGTCGCAAGAAAAG
127 GA-TATTGATGCTTTGGTTTCGCAAGAAAAG
*
2049064 CTTTTTTTTC
1 CTTTTCTTTC
2049074 GTCGTTTTTG
Statistics
Matches: 35533, Mismatches: 12548, Indels: 7706
0.64 0.22 0.14
Matches are distributed among these distances:
139 2 0.00
140 77 0.00
141 13 0.00
143 2 0.00
145 12 0.00
146 33 0.00
147 39 0.00
148 52 0.00
149 10 0.00
150 34 0.00
151 100 0.00
152 119 0.00
153 422 0.01
154 289 0.01
155 402 0.01
156 1442 0.04
157 4300 0.12
158 11474 0.32
159 12587 0.35
160 2386 0.07
161 905 0.03
162 442 0.01
163 118 0.00
164 28 0.00
165 17 0.00
166 27 0.00
167 13 0.00
168 12 0.00
169 6 0.00
170 20 0.00
171 14 0.00
172 8 0.00
173 15 0.00
174 26 0.00
175 10 0.00
176 2 0.00
177 4 0.00
178 7 0.00
179 15 0.00
180 1 0.00
181 3 0.00
182 4 0.00
183 16 0.00
184 14 0.00
185 4 0.00
186 7 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (156 bp):
CTTTTCTTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC
ATAACAATCTCCATTCTTTTCAGATTGGGATCCAAAAACACATTCTTTCATTAAGATACATGATA
TTGATGCTTTGGTTTCGCAAGAAAAG
Found at i:2000408 original size:475 final size:474
Alignment explanation
Indices: 1989935--2029254 Score: 39991
Period size: 476 Copynumber: 82.6 Consensus size: 474
1989925 TCCCTTAAAT
* ** *
1989935 AAGAAAAGCTTTTTTTCTAC-CATTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * *
1989999 GAATACTTATACTATTCCCCATTCTTTTTAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * ** * *
1990064 ATACACGATATTGTTCCATTCGATTCGTAAGAAAGGCTTTTTTCCCATAAAATTTTTGTAAAGTT
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTAAGGTC
*
1990129 AAAATAT-ATGCCTCAAATGAGCCAAACGTGGATTA-TAGTTTTGATCTTCACTCATTTTGTGAT
195 AAAAT-TCATGCCTCAAATGAGCCAAACGTGGA-TACTAGTTTTGATCTTCATTCATTTTGTGAT
* * * * ** * *
1990192 TAAGCACTGTAAAAACATTCTCCTCATTAAGATTAATGATATTGATTTTTTTTATTTTGCGTTGA
258 TAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGA-TGATTTTCTTTTGC-ATGA
* * *
1990257 AATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGAT
321 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
** * * * * *
1990322 TCTCGTAACAATCTCCATTGGTTTGAAGATTGGGGTCCAAAATCATATTCTATTCATTAGGATAC
386 TCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* *
1990387 ATGGCAGTGATGCTTTGGTATCGC
451 ATGACAGTGATGCTTTGGTGTCGC
** * * *
1990411 AA-AAAAGCTTTTTTT-CTGTCGTTTTTTATAGAATCAATGTTTGTTTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * **
1990474 TGAATACTCT-TACTATTCTCTATTCTTTTCACGATTAGGCACTTTAAACATAGCCTTCT-TGTA
65 TGAATACT-TATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-
* * * *
1990537 AGGATACACGATATTGATAGTTTTTGTTTTGCAAG-AAGG-TTTTCTTCCCACCAATTTTTGTAA
128 AGGATACACGATATTGGT-GCTTTCGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAA
* * ** * * * ** *
1990600 AGTCAGAATTTGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTCAATCTTCATTCATTGTGTG
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTG
** * * * * * ** *
1990665 ATTAAACAC-AGTAAAAGCATTCTCCTCGTTACGATTAATGATACTGATTTTTTTTTTTTGCATT
256 ATTAGGCACTA-TAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-T
* * * ** *
1990729 GAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAATTTCATCCCTTGAATATTACAAGCGTCG
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * **
1990794 ATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* * ** *
1990859 GCTTGACTTTGATGCTTTAGTG-CGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * * *
1990884 AAGAAAATGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTGTTAAATCATACAAAC
1 AAGAAAA-GCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
** * * * *
1990949 ATGAATACTCGTACTATTCCCTATTCATTTCAAGATTAGGCACTTTAAACATTGTCTTCTTATTA
64 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * * * * * * * * *
1991014 GGATGCACCATATTGGCGTTTTCTTTTTGCGAGAAAGAG-TTTTTTCCCACCAATATTTATAAAG
129 GGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAG-GCTTTTTTCCCACCAATTTTTGTAAGG
* * * *
1991078 TCAAAATTCATGCCGCAAATGAGCCAAACATGGATTCTAGTTTTGATCTTCATTTATTTTGTGAT
193 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGAT
* * * * * *
1991143 TAGGCACTGTAAAAACATTCCCCTATTTAAGATTAACGACATTGATGATTTTCTTTTTCGTGGAA
258 TAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-GAA
* * * * *
1991208 ATATTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTATCCCCTAAATAAGACAAGCATCGATT
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
** * * * **
1991273 CTCACAACAATCTCTATTTTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACA
387 CTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
**
1991338 TGACAGTGATGCTTTGGTGTTAC
452 TGACAGTGATGCTTTGGTGTCGC
* * * *
1991361 AAGAAAAGCTTTTTCTTTTC-GTCGTTTTTGATAGAATCAAAGTTGGTCTCTTAAATCAGACAAA
1 AAGAAAAGC-TTTT-TTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
*
1991425 CATGAATACTCATACTATTCACC-ATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTC-CAA
63 CATGAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC-A
* * * * * *
1991488 TTAGGATACAAGATATTGGT--TTTGGTTTCTCAAGAAAGGCATTTTTCCCACTAATTTTTGTAA
126 CTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * * * * * **
1991551 AGTCAAAGTTCGTGCCACAAATGAACCAAACATGAATTTTTAGTTTTGATCTTCATTCATTTTGT
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGA-TACTAGTTTTGATCTTCATTCATTTTGT
* * *
1991616 GATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTATTTTGCATG
255 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG
1991681 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
320 -AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * * * *
1991746 ATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTGTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* *
1991811 ACATGATAGTGATGCTTTGGT-TGGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * * * * * *
1991836 AAGAAAAGCTTTTTTTTCGCCGTTTTTTATAGAATCAAAGCTGGTCTCTTAAATTAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * * *
1991901 GAATACTCATACTATTTTCC-ATTCTTTTTAAGATTAGGCACTTTGAACGTTGTCTTCTCATTAG
66 GAATACTTATACTA-TTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
1991965 GATACACAATATTGGTGCTTT-GGTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTGTAAAGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
** *
1992029 AAAATTCATGCCTCAAATGAGCCAAACGTGGATTTTAGTTTTGATCTTCATTCATTTTATGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
1992094 GGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTAATGATTTTCTTTTGCATTGAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAAT
* **
1992159 CTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAGGAGACAAGCATCGATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * ** *
1992223 CGTAACAATCTCCATTCTTTTCAAGATAGGGATCCAAAAACACATTCCCTTCGTTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
* * *
1992288 GCATTGATGCTTTGGTGTTGC
454 ACAGTGATGCTTTGGTGTCGC
* * * *
1992309 AAGAAATGCTTTTCTTTCTACCGTTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAAC
1 AAGAAAAGCTTTT-TTTCCACTG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
1992374 ACGAATGCTTATACTATTCCCCATTCTTTTCAACATTAGGCACTTTAAACATAGTCTTCTCACTA
64 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * * ** * ** * *
1992439 TGATACACAATATTGGTGCTTTGGTTTTTCAAGAAAGGCTTCTTTCCCAAGAAATTTTTGAAAAG
129 GGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGG
* * * * *
1992504 TCAAAATCCGTGCCTCAAATGAGCCAAACGTGGAT-TTCAATTTTGATCTTCATTCGTTTTGTGA
193 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACT-AGTTTTGATCTTCATTCATTTTGTGA
* * * **
1992568 TTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGTGTTGA
257 TTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTG-CATGA
* *
1992633 AATCTTTTCTTTGCTCTACTTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAATCATCGA
321 AATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
** * * * **
1992697 TTCTCACAACAATCTCCATTGTTTTCAAGATTGGGATCAAAAAACACATTCCCTTCATTAGGATA
385 TTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATA
**
1992762 CATGACTTTGATGCTTTGGTGTCGC
450 CATGACAGTGATGCTTTGGTGTCGC
* * * * *
1992787 AAGAAATGCTTTCCTTTCCACCGTTTCTT-ATAGAATCAAAGTTTGTCTCTTAAGTCTA-ACAAA
1 AAGAAAAGCTTT-TTTTCCACTGTTT-TTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAA
* * * *
1992850 CATGAATACTCATGCTAATCTCC-ATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAT
63 CATGAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAC
* * * *
1992914 TAGGATACATGATATTGGTGCTTTGGTTTCGCAAGAAA-GTTTTTTATACCACCAATTTTTGTAA
127 TAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTT-TCCCACCAATTTTTGTAA
* * * * * *
1992978 GGTCAAAATCCGTGCCTCAAATGAGCCAAAAGTGGATTCTAGTGTTGATCTTCATTCACTTTGTG
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTG
* * * *
1993043 ATTAGGAACTATAAAAACATTCTCTTCATTAAGATTAACGATATTGATGATTTTCTTTCGCATGA
256 ATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-
* * *
1993108 AAATCTTTTCTTTGCCTTATTTTCCCTAAAATCAAAGTTCATCCCTTAAATAAGACAGGCATCGA
320 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * ** *
1993173 TTCTCATAACAATCTCCATTCTTTTCCA-AATTGGGATCCAAAAACACATTCCCTTCGTTAGGAT
385 TTCTCGTAACAATCTCCATTCTTTT-CATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
** * *
1993237 ACATGGGATTGTTGCTTTGGTGTCGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * * * * *
1993263 AAGAAATGCTTTTCATTCCGCTGTTTTTTGAGAGAATTAAAGTTTGTCTCTTAAATGAGACAAAC
1 AAGAAAAGCTTTT-TTTCCACTG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
1993328 ATGAATGCTTATACTATTCCCTATTCTTTTTAGGATTAGGCACTTTAAACATAGCCTTCTC-GTA
64 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-
* * * * * * * * * *
1993392 AGGATACATGATACTGATGGTTTCATTTTGCAAGAAGGGCTTTCTTCCCACTAATTTTTGTAAAG
128 AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGG
* * * * * *
1993457 TCAAAGTTTATGCCTCAAATAAGCCAAACATGGATTCTAGTTTTGATCTTCATTCTTTTTTGTGA
193 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTC-ATTTTGTGA
* * * * * * * *
1993522 TTAAGCACAATAAAAACATTCTCCACGTTAAGATTAATGATATTAATTAGTTTT-TTTTGCGTTG
257 TTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGA-TTTTCTTTTGC-ATG
* * * * *
1993586 AAATCTTTTCCTTACCCTATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATTGA
320 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
** * * * *
1993651 TTCTCACAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACATACTTC-CTTCTTTAGGAT
385 TTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACA-TTCTATTCATTAGGAT
** * *
1993715 ACATGACTTTGAAGTTTTGGTGTCGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * * *
1993741 AAGAAATGTTTTTCTTTCTGC-CT-TTTTTTATAGAATCAAAGTTTGTCTCTTAAATCAGACAAA
1 AAGAAAAGCTTTT-TTTC--CACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
1993804 CATGAATACTTGTACTATT-CCTCAGTCTTTTCAAGATTATGCACTTTAAACATAATCTTTTCAT
63 CATGAATACTTATACTATTCCCT-ATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAC
* * * ** *
1993868 TAGGTTACACGATATTGGTGCTTTAGGGTTCGCAAGAAAGG-GGTTTTCCCACCAATTTTTATAA
127 TAGGATACACGATATTGGTGCTTT-CGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * *
1993932 AGTTAAAATTCATGCCACAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGTG
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTG
* * *
1993997 ATTAGGCACAATAAAAACATTCTTCTCTTTAAGATTAAGGATATTGATGATTTTCTTTTGCATTG
256 ATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TG
* * * * *
1994062 AAATCTTTTCATTGCCCTATTTTTCTTAAAATCAAAGTTCATCTCTTAAATATGACAAGCATCAA
320 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* ** * * *
1994127 TTCTCGTAATAGCCTCTATTCTTTTCAAGATTAGGATCCAAAAACACATTCTATTCATTAGGATA
385 TTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATA
* * * *
1994192 CACGAGAGAGATGCTTTGGTGTCAC
450 CATGACAGTGATGCTTTGGTGTCGC
** * ** * *
1994217 AAGAAAAGCTTTTTTTCTGCTGTTTTTGATAGAATCAAGGTTTG--TCTTAAATCGGACGAACTT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
** * *
1994280 GAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAAG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * *
1994345 ATACACGATATTGGTGCTTTGGATTCGCAAGGAAAAG-TGTTTTTCCCACCAATTTTTGTAAAGT
131 ATACACGATATTGGTGCTTTCGTTTCGCAA-GAAAGGCT-TTTTTCCCACCAATTTTTGTAAGGT
* * * * *
1994409 CTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATT
194 CAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATT
* ** **
1994474 AGGCACTATAAAAACATTATCCTCAATAAGATTAATAATATTGATGATTTTCTTTTGCATTGAAA
259 AGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
* * *
1994539 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCTTTAAATAAGACAAGCATTGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*** * * *
1994604 TTAAAACAATCTCCATTCTTTTCAAGATTTGGATCCAAAAACACATTCTGTTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
*
1994669 GACCGTGATGCTTTGGTGTCGC
453 GACAGTGATGCTTTGGTGTCGC
* * * * * * * *
1994691 AAGAAAAGCTTTTTTTTCGCCGTTTTTGATAGAATCAAGGTTTGTCTCTGAAATTAGACGAACTT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
** * **
1994756 GAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAAA
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * *
1994821 ATACATGATATTGGTGCTTTGGATTCGCAAGGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAA-GAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * ** * * **
1994886 TAAGTTCGCGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTCATGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
1994951 GGCACTATAAAAACATTATCCT-TAATAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCT-TTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
* *
1995015 TCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AGAACACGCATCGATT
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG-ACAAGCATCGATT
* * ** * *
1995079 CTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTGCGTTAGGATACA
387 CTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
* *
1995144 TGGCATTGATGCTTTGGTGTCGC
452 TGACAGTGATGCTTTGGTGTCGC
* * * *
1995167 AAGAAATGTTTTTCTTTCTGC-CAT-TTTTTGATAGAATTAAAGTTTGTTTCTTAAATAAGACAA
1 AAGAAAAGCTTTT-TTTC--CAC-TGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
1995230 ACATGAATGCTTATACTATTCCCCATTCTTTTCAACATTAGGCACTTTAAAAACATAGTCATCTC
62 ACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTT--AAACATAGTCTTCTC
* * * * * *
1995295 ATTTGGATACATGATATTGGTG-TTTTGGTTCTGCAAGAAAGG-TTTTTATACCACCAATTTTTG
125 ACTAGGATACACGATATTGGTGCTTTCGTTTC-GCAAGAAAGGCTTTTT-TCCCACCAATTTTTG
* * * ** *
1995358 TAGGGTCGAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTGCTGATCTTCATTCACTTT
188 TAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT
* * * * * *
1995423 GTGATTAGGAACAATAAAAACATTCTCTTCATTAAGATTAATGATATTGATGATTTTCTTTCGCA
253 GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA
* * *
1995488 TGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAGAGTTCATCCCTTAAAAAAGACAAGCAT
318 TG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * ** * *
1995553 CGATTCTCATAACTATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCGTTGGG
382 CGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGG
* *
1995618 ATACATGGCATTGATGCTTTGGTGTCGC
447 ATACATGACAGTGATGCTTTGGTGTCGC
* * * * * * * *
1995646 AAGAAATGCTTTTCTTTTCGCCGTTTTTTTATAGAATTAAAGTTTGTCTCTCAAATAAGACAAAG
1 AAGAAAAGCTTTT-TTTCCACTG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
1995711 ATGAATGCTTATACTATTCCCCATTCTTTTCAACATTTGGCACTTTAAACATAGTCTTCTCACTA
64 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * * * *
1995776 TGATACACGATATTGGTGCTTTGGATTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
129 GGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGT
* * *** * * ***
1995841 CTAAGTTCGCACCTCAAATGAGCCAAACCTGGATTCTAGTACCGATCTTCATTCATTTTGTGATT
194 CAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATT
* **
1995906 AGGCACTATAAAAACATTCTCCTCATTAAGATTAATAATATTGATGATTTTCTTTTGCATTGAAA
259 AGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
* * ** *
1995971 TCTTTTCTTTGCCTTATTTTCCTTAAAGTCAAAGTTCATCCCTTAAATAAGTTAGGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * ** *
1996036 TCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCGTTCGTTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * *
1996101 GGCATTGATGCTTTGGTGCCGC
453 GACAGTGATGCTTTGGTGTCGC
* * * * *
1996123 AAGAAATGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGTCAAACA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
*** * * * ** *
1996188 TGAATACTCGCACTATTCCCCATTCTTTTGAAGATTAGGCATTTTAAACATTCTCTTCTCAATAG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
1996253 GATACACGATATTAGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * *
1996318 AAAATTCGTGCCTCAAATGAGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * * **
1996383 GGCTCTATAAAAACATTCTCCTCATTAAGATTAATGATATTGGTGATTTT-TCGTGCCTCAAATG
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTG---C--ATG
* * * ** ** * *
1996447 AGCCAAGCGTGGATTCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCTCTATAAAAACATTC-
320 A---AATC-T---TT-T--CTTTG--C--C-CT-A-TTT-TCCTTA----AAAT-CAAA-GTTCA
* * * * * * *
1996511 TCCTCATTAAGATTAATGATATTG-GT-GATTTTCTTTTGCATGAA-AATCT--TTTCTTTGCCC
361 TCC-C-TTAA-A-TAA-GACA-AGCATCGA--TTC---T-CGT-AACAATCTCCATTCTTT-TCA
* * * * * * * * * * * * * *
1996571 T-ATT---TTCCTTGAAATCAAAGTCCATCCCTTA--A-AGAAGACA---A-GCATCGATTCTCG
412 TGATTGGGATCC--AAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTG-GTGTCG
*
1996625 T
474 C
* *** * * * ** * * * * *
1996626 AACAATCTCCATTGTTTT-CA-AGATTGGGATCCAAAAGCACA-TTCTAT-TCTTTAGGATACAT
1 AAGAA-AAGC-TTTTTTTCCACTGTTTTTGAT--AGAATCAAAGTT-TGTCTC-TTA-AATA-A-
* *** ** ** * ** **** * * * * ** ** * **
1996687 GGCAGTTATGCTTTGGTGTCACAAGAAAAGCT-TTTTTTTCACCGTTTTTGATAGAATCAAAGTT
57 GACAAACATG-AATACT-T-ATACTATTCCCTATTCTTTTCA-AG-ATTAGGCA-CTTTAAACAT
* * * ** * * * ** * * ** * * *
1996751 TGTCTTTTAAAAAAGACAAACATGAATATTTATACTATTCCCCATTCTTTTCAAGCTTAA-TCAT
116 AGTCTTCT-CACTAG-GATACACG-ATATTGGTGCT-TT---C-GT-TTCGCAAG--AAAGGCTT
*** * *** * * * ** * **** ** *
1996815 TTTAAACA-TAGTATTCTCACTATGATACATGATATTGGTGCTTTGGTTTCG-CAAGA-ATGG--
170 TTTTCCCACCA--ATT-TTTGTAAGGT-CA--AAATTCATGCCTCAAATGAGCCAA-ACGTGGAT
* *** * *
1996875 -CT--TTTT--TC-CCAAGAAATTTTTGTAAAGTCAAAATTCATGC-CTCAAATGAGCCAAACAT
228 ACTAGTTTTGATCTTC-ATTCA-TTTTGT---G-----ATT-AGGCACT---AT-A--AAAACAT
* * * * *
1996933 TCTCTTCATTAAGATTAATGATATTAATGATTTTCTTTCGTG-TTGAAATCTTTTCTTTGCCCTA
276 TCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTT--TGCATGAAATCTTTTCTTTGCCCTA
*
1996997 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCAT
339 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * * **
1997062 TGTTTTCAAGATTGGGAT-AAAAAACACATTCCT-TTCTTTATGATACATGACTTTGATGCTTTG
404 TCTTTTCATGATTGGGATCCAAAAACACATT-CTATTCATTAGGATACATGACAGTGATGCTTTG
*
1997125 GTGCCGC
468 GTGTCGC
* * * * * * *
1997132 AAGAAATGCTTTCCTTTCCTCCGTTTCTGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAATA
1 AAGAAAAGCTTT-TTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1997197 TGAATGCTCATACTATTCTCC-ATTCTTTTCGAGATTAGGCACTTTAAACATAGTCTTCTCATTA
65 TGAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * * * * *
1997261 GGATACATGATATAGGTGC-TTCGATTTCGCAAGAAACGCTTTTTTCTCACCAATTTTTATAAAG
129 GGATACACGATATTGGTGCTTTCG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGG
* * * *
1997325 TCAAAATTCATGCCTCAAATGAGTCAAACATGGATTCTAGTTTTAATCTTCATTCATTTTGTGAT
193 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGAT
* *
1997390 TAGGCACTATAAAAACATTCTCTTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAA
258 TAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AA
* * *
1997455 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTCAAATAAGACAAGCATCAATT
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * *
1997520 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAGACACATTTTATTCATTACGATACA
387 CTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
* *
1997585 TGACTA-TGGTGCTTTGGTGTCGT
452 TGAC-AGTGATGCTTTGGTGTCGC
* * * * *
1997608 AAGAAATGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAATAA
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** ** *
1997673 GAATACTCT-TACTAATCTCC-GTT-TTATCGAGATTAGGCACCATAAATGTAGTTTTCT-A-TA
66 GAATACT-TATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-
* * * * * * *
1997733 AAGATACATGATATTGATGCTTTTGATTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAGG
128 AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGG
* * * * *
1997798 TCAAAATTCGTGCCTTAAATAAGCCAAACGTGGATTCTAGTTTTGATCTTCATTCATTTTGGGAT
193 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGAT
* *
1997863 TAGGCTCTATAAAAACATTCTCTTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATGAAA
258 TAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AA
* *
1997928 ATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATT
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *
1997993 CTCATAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACGCATTCTATTCATTAGGATACA
387 CTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
*
1998058 TGACAGTGATGCTTTGGTATCGC
452 TGACAGTGATGCTTTGGTGTCGC
*
1998081 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
1998146 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTTTCACAAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** *
1998211 ATACACGATATTGGTGCTTTCGTTTTGCAAGAAATGCTATTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
1998276 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
1998341 GGCGCTATAAAAACATTCTCCTCTTCAAGATT-ACTGATATTGATGATTTTATTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
* * *
1998405 TCTTTTCTTTCCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * **
1998470 TCGTAATAATCTCCACTCTTTTCATGATTGGGATCCAAAAACATGTTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* *
1998535 GACAATGATGCTATGGTGTCGC
453 GACAGTGATGCTTTGGTGTCGC
* * * *
1998557 AAGAAAGGCTTTTTTT-CACTGTTTTTTATGGAAACAAAGTTTGTCTCTTAAATTAAG-CAAACA
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACA
* * * * * *
1998620 TGAATACTTATACTATTCCCCATTATTTTCAAGGTTAGGCACTTTAAACAAAGACTTCTCAGTAG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* ** *
1998685 GATACATGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAATTTTGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * * *
1998750 AAAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTCGCTCTTCATTCTTTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
1998815 GGCACTATAAAAATATTCTCCTCTTTAAGATGAACGATATTGATGATTTTCTTTTGCATTGAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAAT
* * * ** * * *
1998880 CTTTTCTTTGCCTTATTTTCTTTAAAATCAAAATTCATCATTTACATAAGACAAGCATTGAATCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * *
1998945 CGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTACGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
* *
1999010 ACAGTGATGCTTTCGTGTCGT
454 ACAGTGATGCTTTGGTGTCGC
* * *
1999031 AAGAAATGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*** * * * ** ** *
1999096 GAATAGGCATACTAATCTCC-ATTTTTTTCAGGATTAGGCACCATAAATGTAGTATTCT-A-TAA
66 GAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-A
* * ** * * * *
1999158 GGAGACA-TATATTAATGCTTTCATTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
129 GGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGT
** * * * * * *
1999222 CAAAATTTGTGCCTCAAATAAGCCAAACATGGA-ATCAAGTTTTGATCCTCTTTCACTTTGTGAT
194 CAAAATTCATGCCTCAAATGAGCCAAACGTGGATA-CTAGTTTTGATCTTCATTCATTTTGTGAT
* ** * *
1999286 TAGGCACTATAAAAACATTCTCCCCAATAAGATTAATGATATTGATAATTTTCTTTTGCATGAAA
258 TAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AA
1999351 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
** * * *
1999416 CTCACAACAATCTCCATTCTTTCCAAGATTGGGATCCAAAAACACATTCCT-TTCATTAGGGTAC
387 CTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATT-CTATTCATTAGGATAC
* * *
1999480 ATGACTAAG-G-TGCTCTGGAGTCAC
451 ATGAC--AGTGATGCTTTGGTGTCGC
* *
1999504 AAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-ACAGACAAAC
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAAC
* * ** ** * ** * *
1999568 ATGAAAACTCATA-TACACGATAGTCTTCCCAAGATTAGGCACTTTAAACATAGTCTTCTCATTG
64 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * *
1999632 GGATACACGATATTGGTGTTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAGGT
129 GGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGT
* * * *
1999697 CAAAAATTCGTGCCACAAACGAGCCAGACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGAT
194 C-AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGAT
* * *
1999762 TAGGCACTATAAAAAAATTCTCTTCTTTAAGATTAACGATATTGTTGATTTTCTTTTGCATGAAA
258 TAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AA
* * * * * *
1999827 ATCTTTTCTTTGCCCTATTTTTCTTAAAATGAAAGTTTAGCCCTTAAGTAAAACAAGCATCGATT
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
*
1999892 CTCGTAACAATCTCCATTC-TTTCAATGATTGGGATCCAAAAACACATTCTATTCGTTAGGATAC
387 CTCGTAACAATCTCCATTCTTTTC-ATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
*
1999956 ATGACAGTGATGCTTTGGTATCGC
451 ATGACAGTGATGCTTTGGTGTCGC
* * * *
1999980 AAGAAAAGTTTTTTTTCCACTGTTTTTGATAGAATCAATGCTTGCCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * *
2000045 GAATGCTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTTTCACAAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * *
2000110 ATACACGACATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTCGTAAGGTCA
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
** * * ** * * * *
2000175 AAATTTGTACCTCAAACGAGCCTGACGTGGATATTAGTTTTTATCTTCTTTCATTTTGTGATTCG
196 AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
* * * * *
2000240 GCATTATAAAAGCATCCTCTTCTTTAAGATTAACAATATTGATGATTTTCTTTTGCATGAAAATC
261 GCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAATC
* ** *
2000305 TTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCGGCCCTTAAATAAGACAAGCATCAATTCTC
325 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
2000370 GTAACAATCTCCAATCTTTTCGTGATTAGGATCCAAAAACACATTCTATTTATTAGGACACATGA
390 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA
*
2000435 CAGTGATGCTTTGGTATCGC
455 CAGTGATGCTTTGGTGTCGC
* *
2000455 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGATAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2000520 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGTACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** *
2000585 ATACACGATATTGTTGCTTTCGTTTCGCAAGAAATGCTATTTTCCCATGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTAAGGTC
*
2000650 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTCATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
** *** *
2000715 GGTGCTATATTTTACATTCTCCTCTTCAAGATT-ACTGATATTGATGATTTTCTTTTGCATTGAA
260 GGCACTATA-AAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAA
* *
2000779 ATCTTTGCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATT
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *
2000844 CTCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACGTTCTATTCATTAGGATACA
387 CTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
* * *
2000909 TGACAATGATGCTATGGTGTAGC
452 TGACAGTGATGCTTTGGTGTCGC
* * * * *
2000932 AAGAAAAGC-TATTTTCTACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * *
2000996 GAATATTTATACTATTCCCCATTATTTTCAAGGTTAGGCACTTTGAACAAAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** *
2001061 ATACATGATATTAGTGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCATGAAATTTTGTAAGGTCA
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
* * *
2001126 AAATTCGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTCGATCTTCATTCATTTTGTGTTTAG
196 AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
*
2001191 GCACTATAAAAACATTCTCCTCTTTAAGATTAATC-ATATTGATGATTTTCTTTTGCTTCGAAAT
261 GCACTATAAAAACATTCTCCTCTTTAAGATTAA-CGATATTGATGATTTTCTTTTGCAT-GAAAT
* * * ** * * *
2001255 CTTTTCTTTGCCTTATTTTCTTTAAAATCAAATTTCATCATTTAAATAAGGCAAGTATCGAATCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * *
2001320 CGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTACGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
**
2001385 ACAGTGATGCTTTGGTGTCAT
454 ACAGTGATGCTTTGGTGTCGC
* *
2001406 AAGAAATGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** ** **
2001471 AAATAGTCATACTAATCTCCGT-TT-TTTTCGGGATTAGGCACCGTAAATGTAG-CGTTCT-A-T
66 GAATACTTATACT-AT-TCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT
* * ** * * * *
2001531 AAGGAGATA-GATATTAATGCTTTCATTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAA
128 -AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAG
* * * * * * **
2001595 GTCAAAATTCGTGCCTCAAATAAGCCAAACATGGA-ATCAAGTTTTGATCTTCTTTCAATTCATG
192 GTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATA-CTAGTTTTGATCTTCATTCATTTTGTG
** * * *
2001659 ATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTGATGATTTTCTTTCGCACAG
256 ATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TG
* * ** *
2001724 AAATTTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATATCTTAAATAAGACAAGTATCGA
320 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
** * ** **
2001789 TTCTCACAACAGTCTCCATTCTTTTCAACATTGGGATCCAAAAACACATTCCCTTCATTAGGATA
385 TTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATA
* *
2001854 CATGACTA-TGGTGCTTTGGTTTCGC
450 CATGAC-AGTGATGCTTTGGTGTCGC
* ** * ** *
2001879 AAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATTAAAGTTTGTCTCTTAAATTCGACAACCA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* ** * * * *
2001944 TGAAAACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATTGTCTTCTCATTGG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * * * *
2002009 GATACATGATATTGGTGCTTTGGTTTCACAAGAAAGGTTTTTTTCCTACCAATTTTCGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* **
2002074 AAAATTCATACCTCAAATGAGCCAGGCGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *** * * *
2002139 GGCACTATAAAAAAATTCAATTCTTTAAGATTAACGATATTAATGATTTACTTTTTCATGAAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAAT
* * * *
2002204 CTGTTCTTTGCCCTATTTTTCTTAAAACCAAAGTTCAGCCCTTAAATAAAGACAAGCATCGATTC
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTC
* * * *
2002269 -CTGTAACAATCTCCATTCTTTCCATGATTGGGATCCAAAAACATATTTTATTCGTTAGGATACA
388 TC-GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
* * * *
2002333 TGATAGTGATGTTTTGGTATTGC
452 TGACAGTGATGCTTTGGTGTCGC
* * *
2002356 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCGTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * *
2002421 GAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCCTCCCATTGGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * *
2002486 ATACACGATATTGGTACTTTGGTTTCCCAAGAAAGGTTTTTTTCCCACTAATTTTCGTAAGGTCA
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
* * * * *
2002551 AAATTCGTTCGTCAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTCATTTTATGATTAG
196 AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
* *
2002616 GCACTATAAAAACATTCTCTTC-TT----TTAACGATATTGATGATTTTTTTTTGCATGAAAATC
261 GCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAATC
* * * * * *
2002676 TTTTCTTTGCCCTTTTTTTCTTAAATTCAAACTTCAACCCTTAAATAAGATAAGCATCGATTCTC
325 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
*
2002741 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACACGA
390 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA
* *
2002806 CAGTGATGCTTTGGTATCAC
455 CAGTGATGCTTTGGTGTCGC
* * ** *
2002826 AAGAAAAGCTTTTTTTCTACTGTTTTCGATAGAATCAAACCTTGTCTCTTAAATAAGGCAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
2002891 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * *
2002956 ATACACGATATTGGTACTTTCGTTTCCCAAGAAAGGTTTTTTTCCCACTAATTTTCGTAAAGTCA
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
* * * * * * *
2003021 AAATTCGTTCGTCAAATGAGCCAGATGTGGATACTAGTTTCGATCTTCATTCATTTTATGATTAG
196 AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
* *
2003086 GCACTATAAAAACATTCTCTTCTTTACGATTAACGATATTGATGATTTTCTTTTGCATGAAAATC
261 GCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAATC
* * * * * *
2003151 TTTCCTTTGCCCTTTTTTTCTTAAATTCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTCTT
325 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
*
2003216 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACACGA
390 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA
* *
2003281 CAGTGATGCTTTGGTATCAC
455 CAGTGATGCTTTGGTGTCGC
* * * * *
2003301 AAGAAAAGCTTTTTCTCCACTGTTTTCGATAGAATCAAAG-CTATCTCTTAAATAAGGCAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2003365 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCCCTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * * ** *
2003430 ATACATGATATTGGTGCTTTTGTTTCGCAACAAATGCTGTTTTCTCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTC-CCACCAATTTTTGTAAGGTC
2003495 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2003560 GGCACTATAAAAACATTCTCCTCTTCAAGATTACCGATATTGATGATTTCTTTTTTTTGCTTTGA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGA--T-TTTCTTTTGC-ATGA
* *
2003625 AATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTT-AGTCCCTTAAATAAGACAAGGATCGA
321 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCGA
* * *
2003689 TTCTTGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCGTTAGGACA
385 TTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATA
* * * *
2003754 CAAGATAGTGATGCTTCGGTATCGC
450 CATGACAGTGATGCTTTGGTGTCGC
* * *
2003779 AAGAAAAGCTTTTTTCCCACTGTTTTTGATAGAATCAAAGCTTGTCTGTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * *
2003844 GAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTTGAACATAGTCTTCTCATTGGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * *
2003909 ATACACGATATTGGTGCTTTGGTTTCACAACAAAGGTTTTTTTCCCACCAATTTTCGTAAGGTCA
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
* ***
2003974 AAATTCGTGCCTCAAATGAGCTTGACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
196 AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
* * * *
2004039 GCACTATAAAAAAATTCTCTTCCTTAAGATTAACGATATTGATGATTTTCTTCTGCATGAAAATC
261 GCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAATC
** * * *
2004104 TTTTCTTTGCCCTATTTTTTTTAAAATCAAAGCTCAGCCCTTAAATAAGACAAGCTTCGATTCTC
325 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
2004169 ATAACAATCTCCATTCTTTTCATGATTAGCATCCAAAAACACATTCTATTCATTAGGATACATGA
390 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA
* * *
2004234 CAATGATGCTTTGGTATCAC
455 CAGTGATGCTTTGGTGTCGC
* * *
2004254 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCCTAAATAAGGCAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2004319 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTTTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* ** ** *
2004384 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAATGCGATTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
*
2004449 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTAATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2004514 GGTACTATAAAAACATTCTACTCTTCAAGATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2004578 TCTTTTCTTTG----A---T-CTTAAAATCAAAGGTCATCCCTTAAATAAGACAA-CGATCGATT
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATT
* * * * *
2004634 C-CTGTAACAATCTCCACTCTTTCCATGATCGGGATCCAAAAATACGTTCTATTCATTAGGATAC
387 CTC-GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* * * **
2004698 ATGATAGGGATGCTTTGGTATCAT
451 ATGACAGTGATGCTTTGGTGTCGC
*
2004722 AA-AAAAGCTTTTTTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
2004786 GAAAACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAATCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** *
2004851 ATACACGATATTGGTGCTTTCGTTTCGCAAGCAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2004916 TATATTCATGCCTTAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2004981 GGCACTATATAAACATTCTCCTCTTCAAGATT-ACTGATATTGGTGATTTTCTTTTGCTTTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGC-ATGAAA
* * * * * *
2005045 TCTTTTCTTTGCCCTATTTTCCTTAAAATGAATGTTCATCTCTTAAGTAAGACAAGCATCAATTA
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
2005110 ACGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* *
2005175 GACAATGATGCTATGGTGTCGC
453 GACAGTGATGCTTTGGTGTCGC
* * * *
2005197 AAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAATTTTGTCTCCTAAATTAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * * *
2005262 TAATACGTATACTATTCCCCATTCTTTTCAAGATTAGGTACTTTAAACAAAGTCTTCTCGCTAGA
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * *
2005327 ATACATGATGTTGGTGCTTTCGTTTTGCAAGAAAGGCTTTTTTCCCACGAAATTTTGTAAGGTCA
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
* * * *
2005392 AAATTCGTACCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCTTTCACTTTGTGATTAG
196 AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
* * *
2005457 GCACTATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTCGCATAGAAATC
261 GCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-GAAATC
* *
2005522 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCTC
325 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * **
2005587 GCAAC-ATCTCCATTCTTATCATGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGA
390 GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGA
*
2005651 CTA-TGGTGCTTTGGTGTCGC
455 C-AGTGATGCTTTGGTGTCGC
* * *
2005671 AAGAAACA-CTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAAC
1 AAGAAA-AGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *** * * * * *
2005735 AAGAAAACTCGCACTATTCCCCATTGTTTTCAAGATTAGGTACTTTAAACATAGTCTTCTCATTG
64 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * ** *
2005800 GGATACACGATATTGGTGCTTTGGTTGCGCAAGAAAGG-TTTTTTTACACCAATTTTCGTAAGGT
129 GGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGT
* * * *
2005864 CAAAATTCGTGCCTTAAATGAGCCAGACGTGGATACTAGTTTT-ATCTTCATTCGTTTTGTGATT
194 CAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATT
** * * *
2005928 AGGCACTATAAAAATGTTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTGTGCAAAGAAA
259 AGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAA
* *
2005993 TCTTTTCTTTGCCCTTTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * *
2006058 -CTGTAACAATCTCCATTCTTTCCATGATCGGGATCCAAAAATACATTCTATTCATTAGGATACA
388 TC-GTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACA
* * *
2006122 TGATAAG-GATGCTTTGGTATCGT
452 TGA-CAGTGATGCTTTGGTGTCGC
*
2006145 AA-AAAAGCTTTTTTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
2006209 GAAAACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAATCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** *
2006274 ATACACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* *
2006339 TAAATTCATGCCTTAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* ** * *
2006404 GGCACTATAAAAACATTCTCCTCTTCAAGATTATTGATATTGGTGATTTTCTTTTGCTTTGAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAAT
*
2006469 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* *
2006534 CGTAACAATCTCCATTTTTTTCACGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
* **
2006599 ACAATGATGCGATGGTGTCGC
454 ACAGTGATGCTTTGGTGTCGC
* *
2006620 AAGAAAAGCTTTTTTTCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAA-ACAAACA
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACA
* *
2006684 TGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * ** *
2006749 GATACATGATTTTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAATTTTGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* *
2006814 AAAATTCATGCCTTAAATGAGCCAAACGTGGATAGTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2006879 GGCACTATAAAAACATTCACCTCTTTAAAATTAATGATATTGATGATTTTCTTTTGCATTGAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAAT
** * * **
2006944 CTCCTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCATCATTTAAATAAGACAAGCATCGATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * *
2007009 CGTAACAATATCCATTCCTTTCAAGATTGGGATCCAAAAACACATTTTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
*
2007074 ACAGTGATGCTTTGGTGTCGT
454 ACAGTGATGCTTTGGTGTCGC
* * ** * * *
2007095 AAGAAAAGCTTTTTTTTCACCGTTTTTGACGGAATCAAAGTTTGCCTCTTAAACAAGATAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * * * ** ** *
2007160 GGATAGTCATACTAATCTCC-ATTTTTTTCAGGATTAGGCGCCATAAATGTTG-CATTCT-A-TA
66 GAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT-
* *** * * *
2007221 AGGATACA-GAGATTAACGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAG
128 AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGG
* * * * * * *
2007285 TCAAAATTCGTGCCTCAAATAAGCCAAATGTGGA-ATCAAG--TTGATCTCCTTTCACTTTGTGA
193 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATA-CTAGTTTTGATCTTCATTCATTTTGTGA
* * * *
2007347 TTAGGCACTATAAAAACATTCTCCTCATTAAGATGAACAATATTGATGATTTTCTTTCGCATAGA
257 TTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-GA
** *
2007412 AATCTTTTCTTCACCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
321 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
** * * * **
2007477 TCTCACAACAATCTCCCTTCTTTTCAAGATTGGTATCCAAAAACACATTCCCTTCATTAGGATAC
386 TCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* *
2007542 ATGACTA-TGGTGCTTTGGTATCGC
451 ATGAC-AGTGATGCTTTGGTGTCGC
* *
2007566 AAGAAATGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATCCA-ACAAAC
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAAC
* ** * * *
2007630 ATGAAAACTCGTACAATTACCC-ATTCTCTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATT
64 ATGAATACTTATACTATT-CCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT
* * * * * * *
2007694 GGGATACACGATATTCGTGCTTTGGTTTCACAAGAAAGGTTTTTTTCCCGCCAATTTTCGTAAGG
128 AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGG
* * * *
2007759 TCAAAATTCATGCCTCAATTGAG-CAAGACGTGGATACCAGCTTTGATCTTCACTCATTTTGTGA
193 TCAAAATTCATGCCTCAAATGAGCCAA-ACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGA
* * *
2007823 TTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAACGATATTGATGATTTTCTTCTACATGAA
257 TTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-A
* * * *
2007888 AATCTTTTCTTTGCCCTAATTTT-CTTAAAATCAAAGTTCAACCCTTAAATAACATAAGCATCAA
321 AATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* *
2007952 TTCTCATAACAATCTCCATTCTTTTCATGATTGGGATCAAAAAACACATTCTATTCATTAGGATA
385 TTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATA
* *
2008017 CATGACAGTGATGCTTTGGTATCAC
450 CATGACAGTGATGCTTTGGTGTCGC
* * *
2008042 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGTCAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * *
2008107 GAATACTTGTGCTATTCCCTATTCTTCTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** *
2008172 ATACACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2008237 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * * * *
2008302 GGCGCTATAAAAACATTCTCCTCTTCAGGATT-TCTAATATTAATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
* * *
2008366 TCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCAATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
2008431 TCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* *
2008496 GACAATGATGCTATGGTGTCGC
453 GACAGTGATGCTTTGGTGTCGC
* * * *
2008518 AAGAAAAGCTTGTTTT-CACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATTAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * *
2008582 GAATACTTATGCTTTTCCCCATTATTTTCAAGGTTAGGCACTTTAAACAAAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * * * * * * *
2008647 ATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTT-TCACC-GTTTTT-TATAGAAT
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTA-AG-GT
* * * * * * * * ** *
2008709 C-AAAGTC-TGTCTCTTAAATTAGACGAACATGAATACTTATGCTTT--TCCCCATT-ATTTTCA
194 CAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATAC-TA-GTTTTGATCTTCATTCATTTT-G
* * * * * ** * * * * *
2008769 AGGTTAGGCACTTTAAACAA-AGTCTTCTCACTAGGA-TACATGATATTGGTG-CTTTCGTTTCG
254 TGATTAGGCACTATAAA-AACATTCTCCTCTTTAAGATTA-ACGATATTGATGATTTTC-TTTTG
* * * * ** * * * * *
2008831 CAAGAAAGGCTTTT-TTT-CCATGAAATTTT--GTAAGGTCAAAATTCATGCCTCAAATGAGCCA
316 CATGAAA-TCTTTTCTTTGCCCT---ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * * **** * * * * * * **
2008892 AACGTGGATACTAGTTTTGATCTTCTTTCACTTT-GTGATTAGGCA-CTATAAAA-ACATTCTCC
377 AGCATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGATCCA-AAAACACATTCTAT
* * * * ** * *
2008954 TCATTAAGATTA-ATGATATTGATGATTTTCTTTTGC
439 TCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * * ** * ** * *
2008990 ATTG-AAATCTTCTCTTTGCCA-TATTTTTTTTAAAATCAAAGTTCATCTCTTGAATAAGACAAG
1 A-AGAAAAGCTT-T-TTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *** * *
2009053 CATCATTTA-TCATAACAATAT-CC-ATTCTTTTCAAGATTTGG-ATCCAAAAACACATTCTAT-
63 CATGA-ATACTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCT-TC
* * * * * * * * * **
2009113 TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGACAA-GCTTTTTTTCCA-CTGTTTTT
123 TCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGA-AAGGCTTTTTTCCCACCAATTTTT
* * * * * ** ** **
2009176 G-ATAGAATCAAAGTT--TGTCTCTCAAATTAGACAAACATTAATACTTA-TACT-ATTCCCCAT
187 GTA-AG-GTCAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATAC-TAGTTTTGA-TCTTCAT
** * * * * ** * * *
2009236 TC-TTTTCAAGATTAGGCACTTTAAACA-AGTCTTCTCACTAGGA-TACATGATATTGATG-CTT
246 TCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTA-ACGATATTGATGATTT
* * * * * * ** * * *
2009297 TCGTTTCGCAAGAAAGGC---ACTTTTCCCATGAAATTTT--GTAAGGTCAAAATTCATGCCTCA
309 TC-TTTTGCATGAAA-TCTTTTCTTTGCCC-T---ATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * * * * **** * * * *
2009357 AATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT-GTGATTAGGCA-CTATAAAA-
368 AATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGATCCA-AAAAC
* * ** * * * ** * *
2009419 ACATTC-ACCTCTTTAAAATTA-ATGATATTGATGATTTTCTTTTGC
430 ACATTCTA-TTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * * ** * ** * *
2009464 ATTG-AAATCTTCTCTTTGCCA-TATTTTTTTTAAAATCAAAGTTCATCTCTTGAATAAGACAAG
1 A-AGAAAAGCTT-T-TTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * *** * *
2009527 CATCAATTATCCTA-ACAATAT-CC-ATTCTTTTCAAGATTTGG-ATCCAAAAACACATTCTAT-
63 CATGAA-TA-CTTATACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCT-TC
* * * * * * * * * **
2009587 TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGACAA-GCTTTTTTTCCA-CTGTTTTT
123 TCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGA-AAGGCTTTTTTCCCACCAATTTTT
* * * * * * ** ** **
2009650 G-ATAGAATCAAAGTT--TGTCTCTTAAATTAGACAAACATTAATACTTA-TACT-ATTCCCCAT
187 GTA-AG-GTCAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATAC-TAGTTTTGA-TCTTCAT
** * * * * ** * * *
2009710 TC-TTTTCAAGATTAGGCACTTTAAACA-AGTCTTCTCACTAGGA-TACATGATATTGATG-CTT
246 TCATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTA-ACGATATTGATGATTT
* * * * * * ** * * *
2009771 TCGTTTCGCAAGAAAGGC---ACTTTTCCCATGAAATTTT--GTAAGGTCAAAATTCATGCCTCA
309 TC-TTTTGCATGAAA-TCTTTTCTTTGCCC-T---ATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * * * * **** * * * *
2009831 AATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT-GTGATTAGGCA-CTATAAAA-
368 AATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGATCCA-AAAAC
* * ** * * * ** * *
2009893 ACATTC-ACCTCTTTAAAATTA-ATGATATTGATGATTTTCTTTTGC
430 ACATTCTA-TTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * * ** * ** * *
2009938 ATTG-AAATCTTCTCTTTGCCA-TATTTTTTTTAAAATCAAAGTTCATCTCTTGAATAAGACAAG
1 A-AGAAAAGCTT-T-TTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * *** * *
2010001 CATCAATTA-TCATAACAATAT-CC-ATTCTTTTCAAGATTTGG-ATCCAAAAACACATTCTAT-
63 CATGAA-TACTTAT-ACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCT-TC
* * * * * * * * * **
2010061 TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGACAA-GCTTTTTTTCCA-CTGTTTTT
123 TCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGA-AAGGCTTTTTTCCCACCAATTTTT
* * ** * * * ** ** **
2010124 G-ATAGAATCAAAGTTGGT-CTCTCAAATTAGACAAACATTAATACTTA-TACT-ATTCCCCATT
187 GTA-AG-GTCAAAATTCATGC-CTCAAATGAGCCAAACGTGGATAC-TAGTTTTGA-TCTTCATT
** * * * * ** * * *
2010185 C-TTTTCAAGATTAGGCACTTTAAACA-AGTCTTCTCACTAGGA-TACATGATATTGATG-CTTT
247 CATTTT-GTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTA-ACGATATTGATGATTTT
* * * * * * ** * * *
2010246 CGTTTCGCAAGAAAGGC---ACTTTTCCCATGAAATTTT--GTAAGGTCAAAATTCATGCCTCAA
310 C-TTTTGCATGAAA-TCTTTTCTTTGCCC-T---ATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * * * * **** * * * *
2010306 ATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT-GTGATTAGGCA-CTATAAAA-A
369 ATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGATCCA-AAAACA
* * ** * * * ** * *
2010368 CATTC-ACCTCTTTAAAATTA-ATGATATTGATGATTTTCTTTTGC
431 CATTCTA-TTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * *** * *
2010412 ATTG-AAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAA-TTTCATCAT-TTAAATAAGACA
1 A-AGAAAAGCTTTT-TTT-CCACTGTTTTTGATAGAATCAAAGTTT-GTC-TCTTAAATAAGACA
** * * * * *** * *
2010473 AGTATCG-ATTCTCGTA-ACAATCTCCC--TTCCTTTCAAGATT-GGGATCCAAAAACACA-TTT
61 AACAT-GAATACT--TATACTAT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCT
* ** * * * * ** * * *
2010532 TATTCTTTACGATACATGACTA-TGGTGCTTTGGTGTCATAAGAAAAGCTTTTTTTTCCA-CAGT
121 T-CTCACTAGGATACACGA-TATTGGTGCTTTCGTTTCGCAAGAAAGGC-TTTTTTCCCACCAAT
* * * * * * * * ** * *
2010595 TTTTG-ATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATAGTCA-TACTAATCTC
183 TTTTGTA-AG-GTCAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATACT-AGTTTTGATCTT
* * * *** * * * *
2010656 CATT-TTTTTCGGGATTAGGCACCATAAATGTA-GCAT--TCTATAAGGA-T-ACATATATTAAT
243 CATTCATTTT-GTGATTAGGCACTATAAAAACATTC-TCCTCTTTAA-GATTAAC-GATATTGAT
* * * * * * * *
2010715 G-CTTTCGTTTCGCCA-GAAAGGC-TTTCTTCCT-ACCAATTTT--TGTAAAGTCAAAGTTCGTG
304 GATTTTC-TTTTG-CATGAAA-TCTTTTCTT--TGCCCTATTTTCCT-TAAAATCAAAGTTCATC
* * * * ** **** * * * * *
2010774 CCTTAAATAAGCCAAACGTGGCA-TCAAGTTTTGATCTTCTTTCACTTTGTCAT--TAGGCA-CT
363 CCTTAAATAAGACAAGCATCG-ATTCTCGTAACAATCTCCATT--CTTT-TCATGATTGGGATCC
* ** * * * * * ** *
2010835 ATAAAA-ACATTTTCCTCATTAAGATTA-GTGATATTGATGATTTTCTTTCGC
424 A-AAAACACATTCTATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * * ** *
2010886 ATAG-AAATCTTTTCTTTCC-CAT-ATTTTGCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
1 A-AGAAAAGCTTTT-TTTCCAC-TGTTTTTG-ATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * *** * * *
2010948 GCATCG-ATTCTCACAATAATAT-CC-ATTCTTTTCAAGATTAGG-ATCCAAAAACACATTC-CC
62 ACAT-GAATACTTATACT-AT-TCCCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCTTC
* * * * * * * * *
2011008 TTCATTAGGATAGATGACTA-TGGTGCTTTGGTATCACAAGAAATGCTTTTCTTTCCACC-GTTT
123 -TCACTAGGATACACGA-TATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTT
* * * * * * * * *** **
2011071 TTG-ATAGAATCAGAATT--TGTCTCTTAAATCCA-ACAAACATGAAAACTCA--TACAATTCCC
185 TTGTA-AG-GTCAAAATTCATG-C-CTCAAAT-GAGCCAAACGTGGATACT-AGTTTTGA-TCTT
* *** * * * * * * * * *
2011130 CATTCCTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGA-TACACGATATTGGTGCT
243 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTA-ACGATATTGATGAT
** * * * * * * * * ** * * * *
2011194 TTGGTTTCGTAAGAAAGGCTTTT-TTTCCACCAAATTT-CGTAAGGTCAAAATTCATGCCTCAAT
307 TTTCTTTTGCATGAAA-TCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * ** * **** * * * * *
2011257 TGAG-CAAGACGTGGATAATAGTTTTGATCTTCAATCATTTT-GTGATTAGGCA-CTATAAAA-A
370 TAAGACAAG-CATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGATCCA-AAAACA
* * * * * * ** * ** * *
2011318 CATTCTCTTCTTTAAGATTA-ACGATATTGGCGATTTTCTTTTGC
431 CATTCTATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * *** * *
2011362 ATGAAAATCTTTTCTTTGCCTTACT-TTTCTT-A-A-AATCAAAGTTCAAC-CTTTAAATAGGAT
1 AAGAAAAGCTTTT-TTT-CC--ACTGTTT-TTGATAGAATCAAAGTTTGTCTC-TTAAATAAGAC
* * * * * ** *
2011422 AAGCATTG-ATTCTCGTA-AC-AATCTCC-ATTCTTTTCATGATT-GGGATCTAAAAACATA-TT
60 AAACA-TGAATACT--TATACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTC
* * * * * * * * * * ** **
2011481 TTATTCATTAGGATACATGACAGTGATGCTTTGGTATCACAAGAAAAGCTTTTTTTTCA-CTGTT
120 TT-CTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATT
* * * * * * * * ** *
2011545 TTTGCT-AGAATC-AAA-GCTTGTCTCTTAAATAAGACAAACATGAATACTTA-TACT-AT-TCC
184 TTTG-TAAG-GTCAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATAC-TAGTTTTGATCT-T
** * * * * ** *
2011604 CTATTC-TTTTCAAGATTAGGCACCT-TAAACATAGTCTTCTCACTAAGA-TACACGATATTGGT
243 C-ATTCATTTT-GTGATTAGGCA-CTATAAAAACATTCTCCTCTTTAAGATTA-ACGATATTGAT
* * * * * * *** *
2011666 G-CTTTCTTTTCACAGGAAATGC-TGT-TTT-CCCAAGAAAATTTT--GTATGGTCAAAATTCAT
304 GATTTTCTTTT-GCATGAAAT-CTTTTCTTTGCCC-----TATTTTCCTTAAAATCAAAGTTCAT
** * * * * * * * * **** * * * *
2011725 GTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT-GTGATTAGGCA-CTA
362 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGATCCA
** * * * * ** * *
2011788 CAAAA-ACATTCTCCTC-TTCAAGATTAC-TGATATTGATGATTTTCTTTTGC
425 -AAAACACATTCTATTCATT-AGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * * * * * ** *
2011838 ATTG-AAATCTTTTCTTTGTC-CTATTTTCCT-TTA-AAACGAAGTTCATCCCTTAAATAAGACA
1 A-AGAAAAGCTTTT-TTT-CCACTGTTTT--TGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * ** * * * * *** * *
2011899 ACCATCG-ATTCTCGTAATAATCTCC-ATTTTTTTCATGATTAGG-ATCCAAAAACACATTCTAT
61 AACAT-GAATACTTATACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGTCT-T
* * * * * * * * * * *
2011961 -TCATTAGGATACATGACAATGATGCTAT-GCTGTCGCAAGAAACGTTTTTTTTCCACC-GTTTT
122 CTCACTAGGATACACGATATTGGTGCTTTCG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * * * ** **
2012023 TG-ATAGAATCAAAGTT--TGTCTCTTAAATTAGACAAACATGGATACTTA-TACT-ATTCCCCA
186 TGTA-AG-GTCAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATAC-TAGTTTTGA-TCTTCA
** * * * ** * * * *
2012083 TTC-TTTTCAAGATTAGGCACTTTAAATAA-AGTCTTCTCACTAGGA-TACATGATATTGGTG-C
245 TTCATTTT-GTGATTAGGCACTATAAA-AACATTCTCCTCTTTAAGATTA-ACGATATTGATGAT
* * *** * ** * * * * *
2012144 TTTCGTTTCGCAAGAAA-GGGTTCTTT-CCCATGAAATTTT--GTAAGGTAAAAATTCGTGCCTC
307 TTTC-TTTTGCATGAAATCTTTTCTTTGCCC-T---ATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * * * **** * * * *
2012205 AAATAAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTT-GTGATTAGGCACTACAAAAA
367 AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTTCATGATT-GGGA-TCCAAAAA
** * * * * * ** * *
2012269 C-CA-TCTCCTCTTTAAGATTA-ATGATATTGATGATTTTCTTTTGC
429 CACATTCTATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCGC
* * * ** * ** *
2012313 ATTG-AAATCTTTTCTTTGC-CT-TATTTTCCTTAAAATCAAAGTTCATCAT-TTAAATAAAACT
1 A-AGAAAAGCTTTT-TTTCCACTGT-TTTT-GATAGAATCAAAGTTTGTC-TCTTAAATAAGAC-
* * * ** * *** *
2012374 GGTAAC--G-ATTCTCGTA-AC-AATCTCCT-TTCCCTTCAAGATTTGG-ATCCAAAAACACA-T
60 --AAACATGAATACT--TATACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTTAAACATAGT
* * * ** * * * * * ** *
2012431 TTTATTCATTACAATACATGACTA-TGGTGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCACC-G
119 CTT-CTCACTAGGATACACGA-TATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAA
* * * * * ** * ** * *
2012494 TTTTTG-ATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAAC--ACA-AATAGTACTAATCTC
182 TTTTTGTA-AG-GTCAAAATTCATG-C-CTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTT
* * * * * ***
2012553 CATT-TTTTTCGAGATTAGGCACCATAAATGTAGCATTCT-ATAAGGATACAGATTTTAACGATA
243 CATTCATTTT-GTGATTAGGCACTATAAA---AACATTCTCCT--CTTTA-AGA--TTAACGATA
** * *
2012616 TTGGCGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTACTTTT-CTTAAAATCAAAGTTCAA
299 TTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCAT
* * * * * *
2012680 CCTTTAAATAGGATAAGCTTTGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCTAAA
362 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAA
* * * *
2012745 AACATATTTTATTCATTAGGATACATGACAGTGATGCTTTGGTATCAC
427 AACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * *
2012793 AAGAAAAGCTTTTTTTTCACTGTTTTTGCTAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2012858 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * * ** *
2012923 ATACACGATATTGGTGCTTTTGTCTCGTAAGAAATGATGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
*
2012988 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTC
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2013053 GGCACTATAAAAACATTCTCCTCTTCAATATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2013117 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
2013182 TCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2013247 GACAATAATGCTATGGTGTCGG
453 GACAGTGATGCTTTGGTGTCGC
* * **
2013269 AACAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2013334 GAATACTTAGACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** * *
2013399 ATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2013464 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2013529 GGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTTTCTTTTGCAATAAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAAT
* * * * * *
2013594 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
**
2013659 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
*
2013724 ACAGTGATG-TTTGGTATCGC
454 ACAGTGATGCTTTGGTGTCGC
* **
2013744 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2013809 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** *
2013874 ATACACGATATTGGTGCTTTTGTTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2013939 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2014004 GGCACTACAAAAACATTCTCCTCTTCAAGATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
* * *
2014068 TCTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATT
323 TCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *
2014132 CTCGTAATAATCTCCACTT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATAC
387 CTCGTAACAATCTCCA-TTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* * *
2014196 ATGACAATGATGCTATGTTGTCGC
451 ATGACAGTGATGCTTTGGTGTCGC
* * **
2014220 AAGAAACGCTTTTTTTCCACCGTTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2014285 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* ** * * * ** *
2014350 ATACATGATATTGGTGCTTTTATTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2014415 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2014480 GGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAA-CATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
** * ** *
2014544 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * *
2014609 TCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2014674 GA-ATATGGTGCTTTGGTGTTGT
453 GACA-GTGATGCTTTGGTGTCGC
* *
2014696 AAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** **
2014760 CAA-A--TAGTACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTAG-CATTCT-A-T
66 GAATACTTA-TACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT
* ** * * * *
2014818 AAGGATACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGGCTTTCTTCCTACCAATTTTTATAA
128 -AGGATACACGATATTGGTGCTTTCGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * * * * *
2014881 AGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCAT-CAAGTTTTGATCTTCTTTCACTTTGT
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCATTCATTTTGT
* ** * * *
2014945 CATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTAATGATTTTCTTTCGCATA
255 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-
* *
2015010 GAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCG
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
** * * **
2015075 ATTCTCACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* * *
2015140 ACAGGACTA-TGGTGCTTTGGTATCGC
449 ACATGAC-AGTGATGCTTTGGTGTCGC
* ** * * * * * **
2015166 GAGAAATTCTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
2015231 TGAAAACTCATACAATTCCCCATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
2015296 GATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTCACCAATTTTCGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * * * *
2015361 AAAATTCATGCCTCAATTGAGCTAGACATGCATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2015426 GGCACCATAAAAACATTC-CTTTCTTTATGATTAACGATATTGATGATTTTCTTTTGCTTGAAAA
260 GGCACTATAAAAACATTCTC-CTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAA
* * * * * * *
2015490 TCTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
2015555 TCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
*
2015620 GACAGTGATGCTTTGGTGTCAC
453 GACAGTGATGCTTTGGTGTCGC
* * *
2015642 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2015707 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** * *
2015772 ATAGACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2015837 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
*
2015902 GGCACTATAAAAA-ATTCTCCT-TTTCAAGATT-ACTGATATTGATGATTTTTTTTTTTTGCATT
260 GGCACTATAAAAACATTCTCCTCTTT-AAGATTAAC-GATATTGATGA---TTTTCTTTTGCA-T
* * * *
2015964 GAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCT
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
2016029 ATTCTCGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
*
2016094 ACATGACAGTGATGCTTTGGTATCGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * *
2016120 AAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2016185 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * ** *
2016250 ATACACGATATTGGTGCTTTTGTCTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
*
2016315 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTC
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2016380 GGCACTATAAAAACATTCTCCTCTTCAATATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2016444 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
2016509 TCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2016574 GACAATAATGCTATGGTGTCGG
453 GACAGTGATGCTTTGGTGTCGC
* * **
2016596 AACAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2016661 GAATACTTAGACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** * *
2016726 ATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2016791 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2016856 GGCACTATAAAAACATTCTCCTCTTTAACATTAATGATATTAATGATTTTCTTTTGCAATAAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAAT
* * * * * *
2016921 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
**
2016986 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
*
2017051 ACAGTGATG-TTTGGTATCGC
454 ACAGTGATGCTTTGGTGTCGC
* **
2017071 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2017136 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** *
2017201 ATACACGATATTGGTGCTTTTGTTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2017266 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2017331 GGCACTACAAAAACATTCTCCTCTTCAAGATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
* * *
2017395 TCTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATT
323 TCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *
2017459 CTCGTAATAATCTCCACTT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATAC
387 CTCGTAACAATCTCCA-TTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* * *
2017523 ATGACAATGATGCTATGTTGTCGC
451 ATGACAGTGATGCTTTGGTGTCGC
* * **
2017547 AAGAAACGCTTTTTTTCCACCGTTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2017612 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* ** * * * ** *
2017677 ATACATGATATTGGTGCTTTTATTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2017742 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2017807 GGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAA-CATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
** * ** *
2017871 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * *
2017936 TCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2018001 GA-ATATGGTGCTTTGGTGTTGT
453 GACA-GTGATGCTTTGGTGTCGC
* *
2018023 AAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** **
2018087 CAA-A--TAGTACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTAG-CATTCT-A-T
66 GAATACTTA-TACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT
* ** * * * *
2018145 AAGGATACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGGCTTTCTTCCTACCAATTTTTATAA
128 -AGGATACACGATATTGGTGCTTTCGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * * * * *
2018208 AGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCAT-CAAGTTTTGATCTTCTTTCACTTTGT
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCATTCATTTTGT
* ** * * *
2018272 CATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTAATGATTTTCTTTCGCATA
255 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-
* *
2018337 GAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCG
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
** * * **
2018402 ATTCTCACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* * *
2018467 ACAGGACTA-TGGTGCTTTGGTATCGC
449 ACATGAC-AGTGATGCTTTGGTGTCGC
* ** * * * * * **
2018493 GAGAAATTCTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
2018558 TGAAAACTCATACAATTCCCCATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
2018623 GATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTCACCAATTTTCGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * * * *
2018688 AAAATTCATGCCTCAATTGAGCTAGACATGCATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2018753 GGCACCATAAAAACATTC-CTTTCTTTATGATTAACGATATTGATGATTTTCTTTTGCTTGAAAA
260 GGCACTATAAAAACATTCTC-CTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAA
* * * * * * *
2018817 TCTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
2018882 TCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
*
2018947 GACAGTGATGCTTTGGTGTCAC
453 GACAGTGATGCTTTGGTGTCGC
* * *
2018969 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2019034 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** * *
2019099 ATAGACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2019164 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
*
2019229 GGCACTATAAAAA-ATTCTCCT-TTTCAAGATT-ACTGATATTGATGATTTTTTTTTTTTGCATT
260 GGCACTATAAAAACATTCTCCTCTTT-AAGATTAAC-GATATTGATGA---TTTTCTTTTGCA-T
* * * *
2019291 GAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCT
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
2019356 ATTCTCGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
*
2019421 ACATGACAGTGATGCTTTGGTATCGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * *
2019447 AAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2019512 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * ** *
2019577 ATACACGATATTGGTGCTTTTGTCTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
*
2019642 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTC
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2019707 GGCACTATAAAAACATTCTCCTCTTCAATATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2019771 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
2019836 TCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2019901 GACAATAATGCTATGGTGTCGG
453 GACAGTGATGCTTTGGTGTCGC
* * **
2019923 AACAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2019988 GAATACTTAGACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** * *
2020053 ATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2020118 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2020183 GGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTTTCTTTTGCAATAAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAAT
* * * * * *
2020248 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
**
2020313 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
*
2020378 ACAGTGATG-TTTGGTATCGC
454 ACAGTGATGCTTTGGTGTCGC
* **
2020398 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2020463 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** *
2020528 ATACACGATATTGGTGCTTTTGTTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2020593 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2020658 GGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTCATTTGCATTGAAA
260 GGCACTATAAAAA-CATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
** * ** *
2020722 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * *
2020787 TCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2020852 GA-ATATGGTGCTTTGGTGTTGT
453 GACA-GTGATGCTTTGGTGTCGC
* *
2020874 AAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** **
2020938 CAA-A--TAGTACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTAG-CATTCT-A-T
66 GAATACTTA-TACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT
* ** * * * *
2020996 AAGGATACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGGCTTTCTTCCTACCAATTTTTATAA
128 -AGGATACACGATATTGGTGCTTTCGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * * * * *
2021059 AGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCAT-CAAGTTTTGATCTTCTTTCACTTTGT
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCATTCATTTTGT
* ** * * *
2021123 CATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTAATGATTTTCTTTCGCATA
255 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-
* *
2021188 GAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCG
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
** * * **
2021253 ATTCTCACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* * *
2021318 ACAGGACTA-TGGTGCTTTGGTATCGC
449 ACATGAC-AGTGATGCTTTGGTGTCGC
* ** * * * * * **
2021344 GAGAAATTCTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
2021409 TGAAAACTCATACAATTCCCCATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
2021474 GATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTCACCAATTTTCGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * * * *
2021539 AAAATTCATGCCTCAATTGAGCTAGACATGCATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2021604 GGCACCATAAAAACATTC-CTTTCTTTATGATTAACGATATTGATGATTTTCTTTTGCTTGAAAA
260 GGCACTATAAAAACATTCTC-CTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAA
* * * * * * *
2021668 TCTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
2021733 TCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
*
2021798 GACAGTGATGCTTTGGTGTCAC
453 GACAGTGATGCTTTGGTGTCGC
* * *
2021820 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2021885 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** * *
2021950 ATAGACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2022015 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
*
2022080 GGCACTATAAAAA-ATTCTCCT-TTTCAAGATT-ACTGATATTGATGATTTTTTTTTTTTTGCAT
260 GGCACTATAAAAACATTCTCCTCTTT-AAGATTAAC-GATATTGATGA----TTTTCTTTTGCA-
* * *
2022142 TGAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATC
318 TGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * *
2022207 TATTCTCGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGA
383 GATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGA
* *
2022272 TACATGATAGTGATGCTTTGGTATCGC
448 TACATGACAGTGATGCTTTGGTGTCGC
* * *
2022299 AAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2022364 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * ** *
2022429 ATACACGATATTGGTGCTTTTGTCTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
*
2022494 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTC
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2022559 GGCACTATAAAAACATTCTCCTCTTCAATATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2022623 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
2022688 TCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2022753 GACAATAATGCTATGGTGTCGG
453 GACAGTGATGCTTTGGTGTCGC
* * **
2022775 AACAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2022840 GAATACTTAGACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** * *
2022905 ATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2022970 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2023035 GGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTTTCTTTTGCAATAAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAAT
* * * * * *
2023100 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
**
2023165 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
*
2023230 ACAGTGATG-TTTGGTATCGC
454 ACAGTGATGCTTTGGTGTCGC
* **
2023250 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2023315 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** *
2023380 ATACACGATATTGGTGCTTTTGTTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2023445 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2023510 GGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTCATTTGCATTGAAA
260 GGCACTATAAAAA-CATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
** * ** *
2023574 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * *
2023639 TCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2023704 GA-ATATGGTGCTTTGGTGTTGT
453 GACA-GTGATGCTTTGGTGTCGC
* *
2023726 AAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** **
2023790 CAA-A--TAGTACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTAG-CATTCT-A-T
66 GAATACTTA-TACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT
* ** * * * *
2023848 AAGGATACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGGCTTTCTTCCTACCAATTTTTATAA
128 -AGGATACACGATATTGGTGCTTTCGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * * * * *
2023911 AGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCAT-CAAGTTTTGATCTTCTTTCACTTTGT
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCATTCATTTTGT
* ** * * *
2023975 CATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTAATGATTTTCTTTCGCATA
255 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-
* *
2024040 GAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCG
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
** * * **
2024105 ATTCTCACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* * *
2024170 ACAGGACTA-TGGTGCTTTGGTATCGC
449 ACATGAC-AGTGATGCTTTGGTGTCGC
* ** * * * * * **
2024196 GAGAAATTCTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
2024261 TGAAAACTCATACAATTCCCCATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
2024326 GATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTCACCAATTTTCGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * * * *
2024391 AAAATTCATGCCTCAATTGAGCTAGACATGCATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2024456 GGCACCATAAAAACATTC-CTTTCTTTATGATTAACGATATTGATGATTTTCTTTTGCTTGAAAA
260 GGCACTATAAAAACATTCTC-CTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAA
* * * * * * *
2024520 TCTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
2024585 TCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
*
2024650 GACAGTGATGCTTTGGTGTCAC
453 GACAGTGATGCTTTGGTGTCGC
* * *
2024672 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2024737 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** * *
2024802 ATAGACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2024867 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
*
2024932 GGCACTATAAAAA-ATTCTCCT-TTTCAAGATT-ACTGATATTGATGATTTTTTTTTTTTTGCAT
260 GGCACTATAAAAACATTCTCCTCTTT-AAGATTAAC-GATATTGATGA----TTTTCTTTTGCA-
* * *
2024994 TGAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATC
318 TGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * *
2025059 TATTCTCGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGA
383 GATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGA
* *
2025124 TACATGATAGTGATGCTTTGGTATCGC
448 TACATGACAGTGATGCTTTGGTGTCGC
* * *
2025151 AAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2025216 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * * ** *
2025281 ATACACGATATTGGTGCTTTTGTCTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
*
2025346 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTC
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2025411 GGCACTATAAAAACATTCTCCTCTTCAATATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2025475 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCGTTAAATAAGACAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
2025540 TCGTAACAATCTCCACTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2025605 GACAATAATGCTATGGTGTCGG
453 GACAGTGATGCTTTGGTGTCGC
* * **
2025627 AACAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2025692 GAATACTTAGACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * ** * *
2025757 ATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2025822 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * *
2025887 GGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTTTCTTTTGCAATAAAAT
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGC-ATGAAAT
* * * * * *
2025952 CTGTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAGCATCAATTCT
324 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
**
2026017 CGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
389 CGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATG
*
2026082 ACAGTGATG-TTTGGTATCGC
454 ACAGTGATGCTTTGGTGTCGC
* **
2026102 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2026167 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** *
2026232 ATACACGATATTGGTGCTTTTGTTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2026297 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2026362 GGCACTACAAAAACATTCTCCTCTTCAAGATT-ACTGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
* * *
2026426 TCTTTTCTTTGTCCTATTTTCCTTTAAAA-CGAAGTTCATCCCTTAAATAAGACAACCATCGATT
323 TCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *
2026490 CTCGTAATAATCTCCACTT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCATTAGGATAC
387 CTCGTAACAATCTCCA-TTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATAC
* * *
2026554 ATGACAATGATGCTATGTTGTCGC
451 ATGACAGTGATGCTTTGGTGTCGC
* * **
2026578 AAGAAACGCTTTTTTTCCACCGTTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2026643 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* ** * * * ** *
2026708 ATACATGATATTGGTGCTTTTATTTCGTAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
2026773 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* *
2026838 GGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAA
260 GGCACTATAAAAA-CATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAA
** * ** *
2026902 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTGGTATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * *
2026967 TCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCATTACGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
* * * *
2027032 GA-ATATGGTGCTTTGGTGTTGT
453 GACA-GTGATGCTTTGGTGTCGC
* * * *
2027054 AAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAGACAAACA-
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * ** **
2027118 CAA-A--TAGTACTAATCTCC-ATTTTTTTCGAGATTAGGCACCATAAATGTAG-CATTCT-A-T
66 GAATACTTA-TACTATTC-CCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCACT
* ** * * * *
2027176 AAGGATACA-GATTTTAATGCTTTCGTTTCGC-CGAAAAGGCTTTCTTCCTACCAATTTTTATAA
128 -AGGATACACGATATTGGTGCTTTCGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAA
* * * * * * *
2027239 AGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCAT-CAAGTTTTGATCTTCTTTCACTTTGT
191 GGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCATTCATTTTGT
* ** * * *
2027303 CATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTAATGATTTTCTTTCGCATA
255 GATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCAT-
* *
2027368 GAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACATGCATCG
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
** * * **
2027433 ATTCTCACAGCAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
* * *
2027498 ACAGGACTA-TGGTGCTTTGGTATCGC
449 ACATGAC-AGTGATGCTTTGGTGTCGC
* ** * * * * * **
2027524 GAGAAATTCTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACA
1 AAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
2027589 TGAAAACTCATACAATTCCCCATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGG
65 TGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
2027654 GATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTCACCAATTTTCGTAAGGTC
130 GATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTC
* * * * *
2027719 AAAATTCATGCCTCAATTGAGCTAGACATGCATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * *
2027784 GGCACCATAAAAACATTC-CTTTCTTTATGATTAACGATATTGATGATTTTCTTTTGCTTGAAAA
260 GGCACTATAAAAACATTCTC-CTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATG-AAA
* * * * * * *
2027848 TCTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTTAACCCTTCAATAAGAGAAGCATCGATTC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
2027913 TCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
*
2027978 GACAGTGATGCTTTGGTGTCAC
453 GACAGTGATGCTTTGGTGTCGC
* * *
2028000 AAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
2028065 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * * * ** * *
2028130 ATAGACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTTTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* * *
2028195 AAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGCGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
*
2028260 GGCACTATAAAAA-ATTCTCCT-TTTCAAGATT-ACTGATATTGATGATTTTTTTTTTTTGCATT
260 GGCACTATAAAAACATTCTCCTCTTT-AAGATTAAC-GATATTGATGA---TTTTCTTTTGCA-T
* * * *
2028322 GAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCT
319 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
2028387 ATTCTCGTAACAATCTCCAATCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAATAGGAT
384 ATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGAT
*
2028452 ACATGACAGTGATGCTTTGGTATCGC
449 ACATGACAGTGATGCTTTGGTGTCGC
* * *
2028478 AAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * *
2028543 GAATACTTATACTATTCCCTATTCTTTTCAGGATTAAGCACTTTAAACATAGTCTTCTCACTAAG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * ** *
2028608 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTTTTGTATGGTC
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAGGTC
* *
2028673 AAAATTCATGCCTTAAATGAGCCAAATGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
195 AAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTA
* * * * *
2028738 GGCAGTATAAAAACATTCTCCTCTTCAAAATT-ACTGATATTAATGATTATCTTTTGCATTGAAA
260 GGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTGATGATTTTCTTTTGCA-TGAAA
*
2028802 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATAC
323 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * *
2028867 TCATAACAATCTCCACTCTTTTCATGATTCGGATCCAAAAACTCATTCTATTCATTAGGATACAT
388 TCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACAT
** *
2028932 GACAACGATGCTATGGTGTCGC
453 GACAGTGATGCTTTGGTGTCGC
* ** * **
2028954 -ACAAAAGCTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATTCGACAAACAT
1 AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2029018 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAGG
66 GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
** * * ** **
2029083 ATACTTGATATTGGTGTTTTCGTTTCACAAGAAAGG-TTGTTTTCCCAAGAAATTTTTGTATTGT
131 ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTT-TTTTCCC-ACCAATTTTTGTAAGGT
* * * *
2029147 CTAAATTCATGCCTTAAATGAGCCAAACGTGGACACTAGTTTTGATCATCATTCATTTTGTGATT
194 CAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATT
* *
2029212 AGGCACTATAAAAACATTCACCTCTTCAAGATT-ACTGATATTG
259 AGGCACTATAAAAACATTCTCCTCTTTAAGATTAAC-GATATTG
2029255 GTATCGCAAG
Statistics
Matches: 33632, Mismatches: 4348, Indels: 1729
0.85 0.11 0.04
Matches are distributed among these distances:
467 314 0.01
468 113 0.00
469 16 0.00
470 1665 0.05
471 673 0.02
472 600 0.02
473 1921 0.06
474 3682 0.11
475 7385 0.22
476 11341 0.34
477 1473 0.04
478 2030 0.06
479 1558 0.05
480 234 0.01
481 26 0.00
482 20 0.00
483 37 0.00
484 6 0.00
485 4 0.00
486 10 0.00
487 8 0.00
488 11 0.00
489 12 0.00
490 4 0.00
491 2 0.00
492 2 0.00
493 1 0.00
494 8 0.00
495 7 0.00
496 6 0.00
497 17 0.00
498 12 0.00
499 6 0.00
500 28 0.00
501 5 0.00
502 28 0.00
503 27 0.00
504 29 0.00
505 24 0.00
506 28 0.00
507 28 0.00
508 12 0.00
509 23 0.00
510 14 0.00
511 6 0.00
512 19 0.00
513 10 0.00
514 8 0.00
515 9 0.00
516 3 0.00
517 1 0.00
518 1 0.00
519 5 0.00
520 7 0.00
521 15 0.00
522 7 0.00
523 9 0.00
524 5 0.00
525 2 0.00
526 6 0.00
527 12 0.00
528 8 0.00
529 3 0.00
531 5 0.00
532 1 0.00
534 37 0.00
535 1 0.00
537 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (474 bp):
AAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
GAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAGGTCA
AAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAG
GCACTATAAAAACATTCTCCTCTTTAAGATTAACGATATTGATGATTTTCTTTTGCATGAAATCT
TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
TAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC
AGTGATGCTTTGGTGTCGC
Found at i:2003022 original size:158 final size:156
Alignment explanation
Indices: 2002355--2004417 Score: 470
Period size: 158 Copynumber: 13.0 Consensus size: 156
2002345 TTTGGTATTG
* *
2002355 CAAGAAAAGCTTTTTTTCCACTATTTTTGATAGAATCAAAGCTT-GTCTCGTAAATAAGACAAAC
1 CAAGAAAAGCTTTTTTTCCACTATTTTCG-TA-AATCAAA-CTTCGTCTCTTAAATAAGACAAAC
* * * *
2002419 ATGAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCCTCCCATTG
63 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTAAAACATAGTCTTCTCATTG
*
2002484 GGATACACGATATTGGTACTTTGGTTTCC
128 GGATACACGATATTGATACTTTGGTTTCC
* * * * * * *
2002513 CAAG-AAAGGTTTTTTTCCCACTAATTTTCGTAAGGTCAAAATTCGT-TCGTCAAATGAGCCAGA
1 CAAGAAAAGCTTTTTTT-CCACT-ATTTTCGTAA-ATCAAACTTCGTCTC-TTAAATAAGACAAA
* * ** * * **
2002576 CGTGGATAC-TAGTTTTGA-T-CTTCATTCATTTT-ATGATTAGGCACTATAAAAACATTCTCTT
62 CATGAATACTTA-TACT-ATTCCCT-ATTC-TTTTCAAGATTAGGCACT-T-AAAACATAGTCTT
** **
2002637 CT--TT----TA-ACGATATTGATGA-TTTTTTTTTG
121 CTCATTGGGATACACGATATTGAT-ACTTTGGTTTCC
* * * * ** * * *
2002666 CATGAAAATCTTTTCTTTGCC-CTTTTTTTCTTAAATTCAAACTTCAACCCTTAAATAAGATAAG
1 CAAGAAAAGCTTTT-TTT-CCAC-TATTTTCGTAAA-TCAAACTTCGTCTCTTAAATAAGACAAA
* * * * ** * *
2002730 CATCG-ATTCTCGTA-AC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAAAAACACATTCTAT
62 CAT-GAATACT--TATACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTAAAACATAGTCT-T
* * * * * *
2002790 -TCATTAGGATACACGACAGTGATGCTTTGGTATCA
121 CTCATTGGGATACACGATATTGATACTTTGGTTTCC
* * *
2002825 CAAGAAAAGCTTTTTTTCTACTGTTTTCGATAGAATCAAACCTT-GTCTCTTAAATAAGGCAAAC
1 CAAGAAAAGCTTTTTTTCCACTATTTTCG-TA-AATCAAA-CTTCGTCTCTTAAATAAGACAAAC
*
2002889 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTG
63 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTAAAACATAGTCTTCTCATTG
* *
2002954 GGATACACGATATTGGTACTTTCGTTTCC
128 GGATACACGATATTGATACTTTGGTTTCC
* * * * * *
2002983 CAAG-AAAGGTTTTTTTCCCACTAATTTTCGTAAAGTCAAAATTCGT-TCGTCAAATGAGCCAGA
1 CAAGAAAAGCTTTTTTT-CCACT-ATTTTCGTAAA-TCAAACTTCGTCTC-TTAAATAAGACAAA
** * * * * * **
2003046 TGTGGATAC-TAGTTTCGA-T-CTTCATTCATTTT-ATGATTAGGCACTATAAAAACATTCTCTT
62 CATGAATACTTA--TACTATTCCCT-ATTC-TTTTCAAGATTAGGCACT-T-AAAACATAGTCTT
** ** **
2003107 CT--TTACGATTA-ACGATATTGATGA-TTTTCTTTTG
121 CTCATTGGGA-TACACGATATTGAT-ACTTTGGTTTCC
* * * * * * ** * *
2003141 CATGAAAATCTTTCCTTTGCC-CTTTTTTTCTTAAATTCAAAGTTCAACCCTTAAATAAGACAAG
1 CAAGAAAAGCTTT--TTTTCCAC-TATTTTCGTAAA-TCAAACTTCGTCTCTTAAATAAGACAAA
* * * * * ** * *
2003205 CATCG-ATTCTTGTAAC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAAAAACACATTCTAT-
62 CAT-GAATACTTAT-ACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTAAAACATAGTCT-TC
* * * * * *
2003265 TCATTAGGATACACGACAGTGATGCTTTGGTATCA
122 TCATTGGGATACACGATATTGATACTTTGGTTTCC
* * * *
2003300 CAAGAAAAGCTTTTTCTCCACTGTTTTCGATAGAATCAAAGC-T-ATCTCTTAAATAAGGCAAAC
1 CAAGAAAAGCTTTTTTTCCACTATTTTCG-TA-AATCAAA-CTTCGTCTCTTAAATAAGACAAAC
* ** *
2003363 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCCCTA
63 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTAAAACATAGTCTTCTCATTG
* * * * *
2003428 GGATACATGATATTGGTGCTTTTGTTTCG
128 GGATACACGATATTGATACTTTGGTTTCC
* * * * ** * ** * * * * *
2003457 CAACAAATGCTGTTTTCTCAAGAAATTTTTGTATGGTCAAAATTCATGC-CTCAAATGAGCCAAA
1 CAAGAAAAGCT-TTTTTTCCA-CTATTTTCGTA-AATCAAACTTCGT-CTCTTAAATAAGACAAA
* * ** * ** *
2003521 CGTGGATAC-TAGTTTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTATAAAAACAT--TCTC
62 CATGAATACTTA-TACT-ATTCCCT-ATTC-TTTTCAAGATTAGGCACT-T-AAAACATAGTCTT
** ** *
2003580 CTC-TTCAAGATTAC-CGATATTGATGATTTCTTTTTTTTGC
121 CTCATT-GGGA-TACACGATATTGAT-A---CTTTGGTTTCC
*** * * * * * * *
2003620 TTTG-AAATCTTTTCTTTGCC-TTATTTTCCTTAAAATCAAAGTTAGTCCCTTAAATAAGACAAG
1 CAAGAAAAGCTTTT-TTT-CCACTATTTT-CGT-AAATCAAACTTCGTCTCTTAAATAAGACAAA
* * * * * * ** * *
2003683 GATCG-ATTCTTGTAAC-AATCTCC-ATTCTTTTCATGATT-GGGATCCAAAAACACATTCTAT-
62 CAT-GAATACTTAT-ACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTAAAACATAGTCT-TC
* * * * * * * * *
2003743 TCGTTAGGACACAAGATAGTGATGCTTCGGTATCG
122 TCATTGGGATACACGATATTGATACTTTGGTTTCC
* * * *
2003778 CAAGAAAAGCTTTTTTCCCACTGTTTTTGATAGAATCAAAGCTT-GTCTGTTAAATAAGACAAAC
1 CAAGAAAAGCTTTTTTTCCACTATTTTCG-TA-AATCAAA-CTTCGTCTCTTAAATAAGACAAAC
* **
2003842 ATGAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTTGAACATAGTCTTCTCATTG
63 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTAAAACATAGTCTTCTCATTG
* * *
2003907 GGATACACGATATTGGTGCTTTGGTTTCA
128 GGATACACGATATTGATACTTTGGTTTCC
* * * * * * * **
2003936 CAA-CAAAGGTTTTTTTCCCACCAATTTTCGTAAGGTCAAAATTCGTGC-CTCAAATGAG-CTTG
1 CAAGAAAAGCTTTTTTT-CCA-CTATTTTCGTAA-ATCAAACTTCGT-CTCTTAAATAAGAC-AA
* * ** * ** * *
2003998 ACGTGGATAC-TAGTTTTGA-T-CTTCATTCATTTT-GTGATTAGGCACTATAAAA-AAATTC-T
61 ACATGAATACTTA-TACT-ATTCCCT-ATTC-TTTTCAAGATTAGGCACT-TAAAACATAGTCTT
* ** *
2004057 CTTCCTTAAGATTA-ACGATATTGATGA-TTT--TCTTCTG
121 C-TCATTGGGA-TACACGATATTGAT-ACTTTGGT-TTC-C
* * ** *
2004094 CATGAAAATCTTTTCTTTGCC-CTATTTTTTTTAAAATCAAAGC-TCAG-CCCTTAAATAAGACA
1 CAAGAAAAGCTTTT-TTT-CCACTA-TTTTCGT-AAATCAAA-CTTC-GTCTCTTAAATAAGACA
* * * * * * ** * *
2004156 AGCTTCG-ATTCTCATAAC-AATCTCC-ATTCTTTTCATGATTA-GCATCCAAAAACACATTCTA
60 AACAT-GAATACTTAT-ACTATTC-CCTATTCTTTTCAAGATTAGGCA-CTTAAAACATAGTCT-
* * * * * * *
2004217 T-TCATTAGGATACATGACAATGATGCTTTGGTATCA
120 TCTCATTGGGATACACGATATTGATACTTTGGTTTCC
* * * *
2004253 CAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTT-GTCTCCTAAATAAGGCAAAC
1 CAAGAAAAGCTTTTTTTCCACTATTTTCG-TA-AATCAAA-CTTCGTCTCTTAAATAAGACAAAC
* * * *
2004317 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTTTCACTA
63 ATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTAAAACATAGTCTTCTCATTG
* * * *
2004382 GGATACACGATATTGGTGCTTTCGTTTCG
128 GGATACACGATATTGATACTTTGGTTTCC
2004411 CAAGAAA
1 CAAGAAA
2004418 TGCGATTTTC
Statistics
Matches: 1343, Mismatches: 383, Indels: 358
0.64 0.18 0.17
Matches are distributed among these distances:
152 10 0.01
153 28 0.02
154 54 0.04
155 8 0.01
156 10 0.01
157 209 0.16
158 542 0.40
159 320 0.24
160 57 0.04
161 32 0.02
162 58 0.04
163 14 0.01
164 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (156 bp):
CAAGAAAAGCTTTTTTTCCACTATTTTCGTAAATCAAACTTCGTCTCTTAAATAAGACAAACATG
AATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTAAAACATAGTCTTCTCATTGGGA
TACACGATATTGATACTTTGGTTTCC
Found at i:2008673 original size:157 final size:157
Alignment explanation
Indices: 2008486--2008848 Score: 636
Period size: 157 Copynumber: 2.3 Consensus size: 157
2008476 TTCTATTCAT
*
2008486 TAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTGTTTTCACCGTTTTTTATAGAA
1 TAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTCACCGTTTTTTATAGAA
*
2008551 TCAAAGTTTGTCTCTTAAATTAGACAAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGT
66 TCAAAGTCTGTCTCTTAAATTAGACAAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGT
2008616 TAGGCACTTTAAACAAAGTCTTCTCAC
131 TAGGCACTTTAAACAAAGTCTTCTCAC
2008643 TAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTCACCGTTTTTTATAGAA
1 TAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTCACCGTTTTTTATAGAA
*
2008708 TCAAAGTCTGTCTCTTAAATTAGACGAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGT
66 TCAAAGTCTGTCTCTTAAATTAGACAAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGT
2008773 TAGGCACTTTAAACAAAGTCTTCTCAC
131 TAGGCACTTTAAACAAAGTCTTCTCAC
* * * * * * *
2008800 TAGGATACATGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTTC
1 TAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTC
2008849 CATGAAATTT
Statistics
Matches: 196, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 196 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (157 bp):
TAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTCACCGTTTTTTATAGAA
TCAAAGTCTGTCTCTTAAATTAGACAAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGT
TAGGCACTTTAAACAAAGTCTTCTCAC
Found at i:2009357 original size:157 final size:157
Alignment explanation
Indices: 2002884--2010325 Score: 1035
Period size: 158 Copynumber: 47.1 Consensus size: 157
2002874 TTAAATAAGG
* * * *
2002884 CAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * * * * *
2002949 CATTGGGATACACGATATTGGTACTTTCGTTTCCCAAGAAAGGTTTTTTTCCCACTAATTTTCGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCA-TGATTTTTGT
* * * *
2003014 AA-AGTCAAAATTC--GTTCGTCAAATGAGC
129 AAGA-TCAAAGTTCATGCTC-TCAAATTAGA
* ** * * * ** * *
2003042 CAGATGTGGATAC-TAGTTTCGA-TCTTCATTCATTTT-ATGATTAGGCACTATAAAAACATTC-
1 CAAACATGAATACTTA--TACTATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * * * * * * *
2003103 TCTTCTTTACGATTA-ACGATATTGATGATTTTC-TTTTGCATGAAAATCTTTCCTTTGCCC-T-
63 TC-TCATTAGGA-TACATGATATTGATG-CTTTCGTTTCGCAAG-AAAGC--T-CTTTTCCCATG
* * * * * *
2003164 TTTTTTCTTAA-ATTCAAAGTTCA-ACCCTTAAATAAGA
121 ATTTTT-GTAAGA-TCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * *
2003201 CAAGCATCG-ATTCTTGTAAC-AATCTCCATTCTTTTCATGATT-GGGATCCAAAAACACATTCT
1 CAAACAT-GAATACTTAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTCT
* * * * * *
2003263 AT-TCATTAGGATACACGACAGTGATGCTTTGGTATCACAAGAAAAGCT-TTTTCTCCACTG-TT
63 -TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGCTCTTTTC-CCA-TGATT
* * * * *
2003325 TTCG-ATAGAATCAAAGCT-AT-CTCTTAAATAAGG
124 TTTGTA-AG-ATCAAAGTTCATGCTCTCAAATTAGA
* * * *
2003358 CAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
** * * * * * *
2003423 CCCTAGGATACATGATATTGGTGCTTTTGTTTCGCAACAAATGCTGTTTTCTCAAGAAATTTTTG
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG--ATTTTTG
* * * * *
2003488 TATGGTCAAAATTCATGC-CTCAAATGAGC
128 TAAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** ** *
2003517 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCT
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * * * * * ** * * *
2003579 CCTC-TTCAAGATTAC-CGATATTGATGATTTCTTTTTTTTGCTTTGAAATCTTTTCTTTGCC-T
63 TCTCATT-AGGA-TACATGATATTGATGCTTTC---GTTTCGC-AAGAAAGC-TCT-TTTCCCAT
* * * * *
2003641 TATTTTCCT-TAAAATCAAAGTT-A-GTCCCTTAAATAAGA
120 GATTTT--TGTAAGATCAAAGTTCATG-CTCTCAAATTAGA
** * * * * * * * *
2003679 CAAGGATCG-ATTCTTGTAAC-AATCTCCATTCTTTTCATGATT-GGGATCCAAAAACACATTCT
1 CAAACAT-GAATACTTAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTCT
* * * * * *
2003741 AT-TCGTTAGGACACAAGATAGTGATGC-TTCGGTATCGCAAGAAAAGCTTTTTTCCCACTG-TT
63 -TCTCATTAGGATACATGATATTGATGCTTTC-GTTTCGCAAG-AAAGCTCTTTTCCCA-TGATT
* * * *
2003803 TTTG-ATAGAATCAAAG--CTTGTCTGTTAAATAAGA
124 TTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * * * * *
2003837 CAAACATGAATACTTACACTATTCCCTATTCTTTTCAAGATTAGGCACTTTGAACATAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * * * * ** *
2003902 CATTGGGATACACGATATTGGTGCTTTGGTTTCACAACAAAGGTTTTTTTCCCACCAATTTTCGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCA-TGATTTTTGT
* * * *
2003967 AAGGTCAAAATTCGTGC-CTCAAATGAG-
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
** * * ** ** ** * *
2003994 CTTGACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAAAATTC
1 C-AAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTC
* * * * * * *
2004056 -TCTTCCTTAAGATTA-ACGATATTGATGATTT--TCTTCTGCATGAAA-ATCTTTTCTTTGCCC
62 TTC-TCATTAGGA-TACATGATATTGATGCTTTCGT-TTC-GCAAGAAAGCTCTTTTC----CCA
* * * * * *
2004116 T-ATTTTTTTTAAAATCAAAGCTCA-GCCCTTAAATAAGA
119 TGA-TTTTTGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * *
2004154 CAAGCTTCG-ATTCTCATAAC-AATCTCCATTCTTTTCATGATTA-GCATCCAAAAACACATTCT
1 CAAACAT-GAATACTTAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTCT
* * * * * * *
2004216 AT-TCATTAGGATACATGACAATGATGCTTTGGTATCACAAGAAAAGCTTTTTTTCCACTG-TTT
63 -TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGCTCTTTTCCCA-TGATTT
* * *
2004279 TTG-ATAGAATCAAAG--CTTG-TCTCCTAAATAAGG
125 TTGTA-AG-ATCAAAGTTCATGCTCT-C-AAATTAGA
* * * * *
2004312 CAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTTT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * ** *
2004377 CACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAATGCGATTTTCCCAAGAAATTTTTG
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG--ATTTTTG
* * * * *
2004442 TATGGTCAAAATTCATGC-CTCAAATGAGC
128 TAAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** * ** * *
2004471 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTAATTTT-GTGATTAGGTACTATAAAAACATTCT
1 CAAACATGAATACTTA-TACT-ATTCCCCATT-CTTTTCAAGATTAGGCACTATAAACACATTCT
* * * * * **
2004533 ACTC-TTCAAGATTAC-TGATATTGATGATTTTC-TTTTGCATTGAAA--TCTTTT-CTTTGA--
63 TCTCATT-AGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGCTCTTTTCCCATGATT
* * * * * *
2004590 TCT-TAAAATCAAAGGTCAT-CCCTTAAATAAGA
124 TTTGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * * * * * *
2004622 C-AACGATCGATTCCTGTA-AC-AATCTCCACTCTTTCCATGA-TCGGGATCCAAAAATACGTTC
1 CAAAC-AT-GAATACT-TATACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
** * * ** * * *
2004683 TAT-TCATTAGGATACATGATAGGGATGCTTTGGTATCATAAAAAAGCTTTTTTTCCACTG-TTT
62 T-TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGCTCTTTTCCCA-TGATTT
* * *
2004746 TTGATAAAATCAAAGTT--TGTCTCTTAAATAAGA
125 TTG-TAAGATCAAAGTTCATG-CTCTCAAATTAGA
* * * * *
2004779 CAAACATGAAAACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAATCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * *
2004844 CACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGCAATGCTGTTTTCCCAAGAAATTTTTG
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGCTCTTTTCCCATG--ATTTTTG
* * * * * *
2004909 TATGGTCTATA-TTCATGC-CTTAAATGAGC
128 TAAGATC-AAAGTTCATGCTCTCAAATTAGA
* * ** ** **
2004938 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATATAA-ACATTC
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATA-AACACATTC
* * * * * ** * *
2004999 TCCTC-TTCAAGATTAC-TGATATTGGTGATTTTC-TTTTGCTTTGAAATCTTTTCTTTGCCC-T
62 TTCTCATT-AGGA-TACATGATATTGATG-CTTTCGTTTCGC-AAGAAAGC---TCTTTTCCCAT
* * * * * *
2005060 -ATTTTCCT-TAAAATGAATGTTCAT-CTCTTAAGTAAGA
120 GATTTT--TGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * *
2005097 CAAGCATCAATTAACGTA-AC-AATCTCCATTCTTTTCAAGATT-GGGATCCAAAAACACATTCT
1 CAAACATGAA-T-ACTTATACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTCT
* * * * * * * *
2005159 AT-TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTCCACCG-TTT
63 -TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGCTCTTTTCCCA-TGATTT
*
2005222 TTG-ATAGAATCAAA-TT-TTG-TCTCCTAAATTAGA
125 TTGTA-AG-ATCAAAGTTCATGCTCT-C-AAATTAGA
* * * * * *
2005255 CAAACATTAATACGTATACTATTCCCCATTCTTTTCAAGATTAGGTACTTTAAACAAAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
** * * * * * * *
2005320 CGCTAGAATACATGATGTTGGTGCTTTCGTTTTGCAAGAAAGGCTTTTTTCCCACGAAATTTTGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG-ATTTTTGT
* * * * * *
2005385 AAGGTCAAAATTCGTAC-CTCAAATGAGC
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** * * ** *
2005413 CAAACGTGGATAC-TAGTTTTGA-TCTTCTTTCACTTT-GTGATTAGGCACTATAAAAACATTCT
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * * * *
2005475 CCTCATTAAGATTA-ATGATATTGATGATTTTC-TTTCGCATAGAAATCTTTTCTTTGCCC-T-A
63 TCTCATTAGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGC---TCTTTTCCCATGA
* * * *
2005536 TTTTCCT-TAAAATCAAAGTTCATCCCCT-AAATAAGA
122 TTTT--TGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * *
2005572 CAAGCATTG-ATTCTCGCA-AC-A-TCTCCATTCTTATCATGATT-GGGATCCAAAAACACATTC
1 CAAACA-TGAATACT--TATACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * * * * *
2005632 -CCTTCATTAGGATACATGACTA-TGGTGCTTTGGTGTCGCAAGAAA-CACTTTTCTTTCCACCG
62 TTC-TCATTAGGATACATGA-TATTGATGCTTTCGTTTCGCAAGAAAGCTCTTTTC---CCA-TG
* * *
2005694 -TTTTAG-ATAGAATCAAAGTT--TGTCTCTTAAATCAGA
121 ATTTTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * *** * * * * *
2005730 CAAACAAGAAAACTCGCACTATTCCCCATTGTTTTCAAGATTAGGTACTTTAAACATAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * * * *
2005795 CATTGGGATACACGATATTGGTGCTTTGGTTGCGCAAGAAAGGTTTTTTTACACCA--ATTTTCG
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTT-C-CCATGATTTTTG
* * * * * *
2005858 TAAGGTCAAAATTCGTGC-CTTAAATGAGC
128 TAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * ** ** ** * ** *
2005887 CAGACGTGGATAC-TAGTTTTA-TCTTCATTCGTTTT-GTGATTAGGCACTATAAAAATGTTCTC
1 CAAACATGAATACTTA-TACTATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCTT
* * * * *
2005949 CTCTTTAAGATTA-ATGATATTGATGATTTTC-TTGT-GCAAAGAAATCTTTTCTTTGCCC-T--
64 CTCATTAGGA-TACATGATATTGATG-CTTTCGTT-TCGC-AAGAAAGC---TCTTTTCCCATGA
* * * * *
2006008 TTTTTCCTTAAAATCAAAGTTCAT-CCCTTAAATAAGA
122 TTTTT--GTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * * * * *
2006045 CAAGCATCAATTCCTGTA-AC-AATCTCCATTCTTTCCATGA-TCGGGATCCAAAAATACATTCT
1 CAAACATGAA-TACT-TATACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTCT
** * * * * * *
2006107 AT-TCATTAGGATACATGATAAGGATGCTTTGGTATCGTAAAAAAGCTTTTTTTCCACTG-TTTT
63 -TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGCTCTTTTCCCA-TGATTTT
* * *
2006170 TGATAAAATCAAAGTT--TGTCTCTTAAATAAGA
126 TG-TAAGATCAAAGTTCATG-CTCTCAAATTAGA
* * * * *
2006202 CAAACATGAAAACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAATCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * *
2006267 CACTAGGATACACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTG
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG--ATTTTTG
* * * * *
2006332 TATGGTCTAAA-TTCATGC-CTTAAATGAGC
128 TAAGATC-AAAGTTCATGCTCTCAAATTAGA
* * ** ** ** *
2006361 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCT
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * * * * * ** * *
2006423 CCTC-TTCAAGATTA-TTGATATTGGTGATTTTC-TTTTGCTTTGAAATCTTTTCTTTGCCC-T-
63 TCTCATT-AGGA-TACATGATATTGATG-CTTTCGTTTCGC-AAGAAAGC---TCTTTTCCCATG
* * * *
2006483 ATTTTCCT-TAAAATCAAAGTTCAT-CCCTTAAATAAGA
121 ATTTT--TGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * *
2006520 CAAGCATTG-ATTCTCGTA-AC-AATCTCCATTTTTTTCACGATT-GGGATCCAAAAACACATTC
1 CAAACA-TGAATACT--TATACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * ** * * * *
2006581 TAT-TCATTAGGATACATGACAATGATGCGATGGTGTCGCAAGAAAAGCTTTTTTTCCGC-CG-T
62 T-TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGC-TCTTTTCC-CATGAT
* *
2006643 TTTTG-ATAGAATCAAAGTT--TGTCTCTTAAATTAAA
123 TTTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * *
2006678 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * *
2006743 CACTAGGATACATGATTTTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAATTTTGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG-ATTTTTGT
* * * * *
2006808 AAGGTCAAAATTCATGC-CTTAAATGAGC
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
* * * ** ** ** * *
2006836 CAAACGTGGATA-GTAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCA
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * ** * * * *
2006898 CCTCTTTAAAATTA-ATGATATTGATGATTTTC-TTTTGCATTGAAATCTCCTCTTTGCCC-T-A
63 TCTCATTAGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGCT-CT-TTT-CCCATGA
* * *
2006959 TTTTTCGTAAAATCAAAGTTCAT-CAT-TTAAATAAGA
122 TTTTT-GTAAGATCAAAGTTCATGC-TCTCAAATTAGA
* * * * * * *
2006995 CAAGCATCG-ATTCTCGTA-ACAATAT--CCATTCCTTTCAAGATT-GGGATCCAAAAACACATT
1 CAAACAT-GAATACT--TATACTAT-TCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATT
* * * * * * * ** *
2007055 -TTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCACCG-T
61 CTT-CTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGCTCTTTTCCCA-TGAT
* * **
2007118 TTTTG-ACGGAATCAAAGTT--TGCCTCTTAAACAAGA
123 TTTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * * * * * * * * * **
2007153 TAAACATGGATAGTCATACTAATCTCCATTTTTTTCAGGATTAGGCGCCAT-AA-ATGTTGCATT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATT-C-TT
* * * * *
2007216 CT-ATAAGGATACA-GAGATTAACGCTTTCGTTTCGCAAGAAAGGCT-TTCTTCCCATCAATTTT
64 CTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTT-TTCCCAT-GATTTT
* * * *
2007278 TGTAA-AGTCAAAATTCGTGC-CTCAAATAAGC
126 TGTAAGA-TCAAAGTTCATGCTCTCAAATTAGA
** * * * * ** *
2007309 CAAATGTGGAAT-C--A-AGT-TGATCTCCTTTCACTTT-GTGATTAGGCACTATAAAAACATTC
1 CAAACAT-GAATACTTATACTAT--TCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTC
* * * * *
2007368 TCCTCATTAAGATGAACA--ATATTGATGATTTTC-TTTCGCATAGAAATCTTTTCTTCACCCA-
62 TTCTCATTAGGAT--ACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGCTCTT-TT--CCCAT
* * * *
2007429 -ATTTTCCT-TAAAATCAAAGTTCAT-CCCTTAAATAAGA
120 GATTTT--TGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * *
2007466 CAAGCATCG-ATTCTCACAAC-AATCTCCC-TTCTTTTCAAGATT-GGTATCCAAAAACACATTC
1 CAAACAT-GAATACTTA-TACTATTC-CCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * * * * *
2007527 -CCTTCATTAGGATACATGACTA-TGGTGCTTTGGTATCGCAAGAAATGCTTTTCTTTCCACTG-
62 TTC-TCATTAGGATACATGA-TATTGATGCTTTCGTTTCGCAAGAAA-GCTCTT-TTCCCA-TGA
* *
2007589 TTTTTG-ATAGAATCAAAGTT--TGTCTCTTAAATCCA-A
122 TTTTTGTA-AG-ATCAAAGTTCATG-CTCTCAAAT-TAGA
* ** * * * * * *
2007625 CAAACATGAAAACTCGTACAATTACCCATTCTCTTCAAGATTAGGCACTTTAAACATAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * * *** *
2007690 CATTGGGATACACGATATTCG-TGCTTTGGTTTCACAAGAAAGGTTTTTTTCCCGCCAATTTTCG
66 CATTAGGATACATGATATT-GATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCC-ATGATTTTTG
* *
2007754 TAAGGTCAAAATTCATGC-CTC-AATT-GA
128 TAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * ** * ** *
2007781 GCAAGACGTGGATAC-CA-GCTTTGATCTTCACTCATTTT-GTGATTAGGCACTATAAAAACATT
1 -CAA-ACATGAATACTTATACTAT--TCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATT
* * * * * * *
2007843 C-TCTTCTTTAAGATTA-ACGATATTGATGATTT--TCTTCTACATGAAA-ATCTTTTCTTTGCC
61 CTTC-TCATTAGGA-TACATGATATTGATGCTTTCGT-TTC-GCAAGAAAGCTCTTTTC----CC
* * * * * *
2007903 CTAATTTTCT-TAAAATCAAAGTTCA-ACCCTTAAA-TA-A
118 ATGATTTT-TGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * * *
2007940 CATAAGCATCAATTCTCATAAC-AATCTCCATTCTTTTCATGATT-GGGATCAAAAAACACATTC
1 CA-AA-CATGAATACTTAT-ACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * * * * * *
2008003 TAT-TCATTAGGATACATGACAGTGATGCTTTGGTATCACAAGAAAAGCTTTTTTTCCACT-ATT
62 T-TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGCTCTTTTCCCA-TGATT
* * * *
2008066 TTTG-ATAGAATCAAAG--CTTGTCTCTTAAATAAGT
124 TTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * * * * * *
2008100 CAAACATGAATACTTGTGCTATTCCCTATTCTTCTCAAGATTAGGCACTTTAAACATAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * *
2008165 CACTAGGATACACGATATTGGTGCTTTCGTTTCACAAGAAATGCTGTTTTCCCAAGAAATTTTTG
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG--ATTTTTG
* * * * *
2008230 TATGGTCAAAATTCATGC-CTCAAATGAGC
128 TAAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** ** * *
2008259 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCGCTATAAAAACATTCT
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * * * * * * * *
2008321 CCTC-TTCAGGATTTC-TAATATTAATGATTTTC-TTTTGCATTGAAATCTTTTCTTTGCCC-T-
63 TCTCATT-AGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGC---TCTTTTCCCATG
* * * *
2008381 ATTTTTCTTAAAATCAAAGTTCAT-CCCAT-AAATAAGA
121 ATTTTT-GTAAGATCAAAGTTCATGCTC-TCAAATTAGA
* * * * * * * * * *
2008418 CAAGCATCAATTCTCGTA-AC-AATCTCCACTCTTTTCATGATT-GGGATCCAAAAACACATTCT
1 CAAACATGAATACT--TATACTATTCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTCT
* * * * * *
2008480 AT-TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTGTTTTCACC--G-TT
63 -TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGC-TCTTTTC-CCATGATT
*
2008541 TTT-TATAGAATCAAAGTT--TGTCTCTTAAATTAGA
124 TTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * * * * * *
2008575 CAAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGTTAGGCACTTTAAACAAAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * * * *
2008640 CACTAGGATACATGACAATGATGCTATGGTGTCGCAAGAAAAGCTTTTTTTCACC--G-TTTTT-
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAG-AAAGC-TCTTTTC-CCATGATTTTTG
*
2008701 TATAGAATCAAAG-TC-TGTCTCTTAAATTAGA
128 TA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * * * * * * *
2008732 CGAACATGAATACTTATGCTTTTCCCCATTATTTTCAAGGTTAGGCACTTTAAACAAAGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * * * *
2008797 CACTAGGATACATGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTTCCATGAAATTTTGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG-ATTTTTGT
* * * *
2008862 AAGGTCAAAATTCATGC-CTCAAATGAGC
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** * * ** *
2008890 CAAACGTGGATAC-TAGTTTTGA-TCTTCTTTCACTTT-GTGATTAGGCACTATAAAAACATTCT
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * * * * * *
2008952 CCTCATTAAGATTA-ATGATATTGATGATTTTC-TTTTGCATTGAAATCTTCTCTTTGCCAT-AT
63 TCTCATTAGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGC-TCT-TTTCCCATGA-
* * ** *
2009014 TTTTTTTAAAATCAAAGTTCAT-CTCTTGAATAAGA
122 TTTTTGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * * *
2009049 CAAGCATCATTTA-TCATAACAATAT--CCATTCTTTTCAAGATTTGG-ATCCAAAAACACATTC
1 CAAACATGA-ATACTTAT-ACTAT-TCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * * * * * *
2009110 TAT-TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGACAAGCTTTTTTTCCACTG-TT
62 T-TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGA-AAGCTCTTTTCCCA-TGATT
2009173 TTTG-ATAGAATCAAAGTT--TGTCTCTCAAATTAGA
124 TTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * *
2009207 CAAACATTAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACA-AGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * *
2009271 CACTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGGCACTTTTCCCATGAAATTTTGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG-ATTTTTGT
* * * *
2009336 AAGGTCAAAATTCATGC-CTCAAATGAGC
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** ** * *
2009364 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCA
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * ** * * * * *
2009426 CCTCTTTAAAATTA-ATGATATTGATGATTTTC-TTTTGCATTGAAATCTTCTCTTTGCCAT-AT
63 TCTCATTAGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGC-TCT-TTTCCCATGA-
* * ** *
2009488 TTTTTTTAAAATCAAAGTTCAT-CTCTTGAATAAGA
122 TTTTTGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * *
2009523 CAAGCATCAATTATCCTA-ACAATAT--CCATTCTTTTCAAGATTTGG-ATCCAAAAACACATTC
1 CAAACATGAA-TA-CTTATACTAT-TCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * * * * * *
2009584 TAT-TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGACAAGCTTTTTTTCCACTG-TT
62 T-TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGA-AAGCTCTTTTCCCA-TGATT
*
2009647 TTTG-ATAGAATCAAAGTT--TGTCTCTTAAATTAGA
124 TTTGTA-AG-ATCAAAGTTCATG-CTCTCAAATTAGA
* * *
2009681 CAAACATTAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACA-AGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * *
2009745 CACTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGGCACTTTTCCCATGAAATTTTGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG-ATTTTTGT
* * * *
2009810 AAGGTCAAAATTCATGC-CTCAAATGAGC
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
* * ** ** ** * *
2009838 CAAACGTGGATAC-TAGTTTTGA-TCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCA
1 CAAACATGAATACTTA-TACT-ATTCCCCATTC-TTTTCAAGATTAGGCACTATAAACACATTCT
* * ** * * * * *
2009900 CCTCTTTAAAATTA-ATGATATTGATGATTTTC-TTTTGCATTGAAATCTTCTCTTTGCCAT-AT
63 TCTCATTAGGA-TACATGATATTGATG-CTTTCGTTTCGCA-AGAAAGC-TCT-TTTCCCATGA-
* * ** *
2009962 TTTTTTTAAAATCAAAGTTCAT-CTCTTGAATAAGA
122 TTTTTGTAAGATCAAAGTTCATGCTCTCAAATTAGA
* * * * * * *
2009997 CAAGCATCAATTA-TCATAACAATAT--CCATTCTTTTCAAGATTTGG-ATCCAAAAACACATTC
1 CAAACATGAA-TACTTAT-ACTAT-TCCCCATTCTTTTCAAGATTAGGCA-CTATAAACACATTC
* * * * * * *
2010058 TAT-TCATTAGGATACATGACAATGATGCTATGGTGTCGCAAGACAAGCTTTTTTTCCACTG-TT
62 T-TCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGA-AAGCTCTTTTCCCA-TGATT
**
2010121 TTTG-ATAGAATCAAAGTTGGT-CTCTCAAATTAGA
124 TTTGTA-AG-ATCAAAGTTCATGCTCTCAAATTAGA
* * *
2010155 CAAACATTAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACA-AGTCTTCT
1 CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
* * *
2010219 CACTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGGCACTTTTCCCATGAAATTTTGT
66 CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAA-GCTCTTTTCCCATG-ATTTTTGT
* * * *
2010284 AAGGTCAAAATTCATGC-CTCAAATGAGC
129 AAGATCAAAGTTCATGCTCTCAAATTAGA
* *
2010312 CAAACGTGGATACT
1 CAAACATGAATACT
2010326 AGTTTTGATC
Statistics
Matches: 5133, Mismatches: 1490, Indels: 1323
0.65 0.19 0.17
Matches are distributed among these distances:
150 21 0.00
151 58 0.01
152 12 0.00
153 8 0.00
154 27 0.01
155 43 0.01
156 252 0.05
157 1102 0.21
158 1620 0.32
159 1573 0.31
160 220 0.04
161 79 0.02
162 104 0.02
163 10 0.00
164 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (157 bp):
CAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTATAAACACATTCTTCT
CATTAGGATACATGATATTGATGCTTTCGTTTCGCAAGAAAGCTCTTTTCCCATGATTTTTGTAA
GATCAAAGTTCATGCTCTCAAATTAGA
Found at i:2029400 original size:305 final size:307
Alignment explanation
Indices: 2028960--2029559 Score: 801
Period size: 305 Copynumber: 2.0 Consensus size: 307
2028950 TCGCACAAAA
* *
2028960 GCTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATTCGACAAACATGAATACT
1 GCTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATCCGACAAACATGAATA--
* * **
2029025 TATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAGGATACTTG
64 TATACAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAGGATACACG
* * * ** *
2029090 ATATTGGTGTTTTCGTTTCACAAGAAAGGTTGTTTTCCCAAGAAATTTTTGTATTGTCTAAATTC
129 ATATTGGTGCTTTCGTTTCACAAGAAAGGTTGTTTTCCCAACAAATTTTCGTAAGGTCAAAATTC
* *
2029155 ATGCCTTAAATGAGCCAAACGTGGACACTAGTTTTGATCATCATTCATTTTGTGATTAGGCACTA
194 ATGCCTCAAATGAGCCAAACGTGGACACTAGTTTTGATCATCATTCATTTCGTGATTAGGCACTA
* * *
2029220 TAAAAACATTCACCTCTTCAAGATTACTGATATTGGTATCGCAAGAAAT
259 TAAAAACAATCACCTCTTCAAGATCAATGATATTGGTATCGCAAGAAAT
* * * *
2029269 GCTTTTCTTTCCACCGTTTTTTATAGAATTAAAGTTTGTCTCTTACATCCGACAAACATG-A-A-
1 GCTTTT-TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATCCGACAAACATGAATAT
* ** * *
2029331 ATACAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCTTTTGTATACACGA
65 ATACAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAGGATACACGA
* * * * * * *
2029396 TATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTTCTAACCAATTTTCGTAAGGTCAAAATTCG
130 TATTGGTGCTTTCGTTTCACAAGAAAGGTTGTTTTCCCAACAAATTTTCGTAAGGTCAAAATTCA
* * *
2029461 TGCCTCAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTCATTTCGTGATTAGGCACTAT
195 TGCCTCAAATGAGCCAAACGTGGACACTAGTTTTGATCATCATTCATTTCGTGATTAGGCACTAT
* * *
2029526 AAAAACAATCTCTTCTTTAAGATCAATGATATTG
260 AAAAACAATCACCTCTTCAAGATCAATGATATTG
2029560 ATGATTTTCT
Statistics
Matches: 251, Mismatches: 39, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
305 196 0.78
308 1 0.00
309 7 0.03
310 47 0.19
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (307 bp):
GCTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATCCGACAAACATGAATATA
TACAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTAGGATACACGAT
ATTGGTGCTTTCGTTTCACAAGAAAGGTTGTTTTCCCAACAAATTTTCGTAAGGTCAAAATTCAT
GCCTCAAATGAGCCAAACGTGGACACTAGTTTTGATCATCATTCATTTCGTGATTAGGCACTATA
AAAACAATCACCTCTTCAAGATCAATGATATTGGTATCGCAAGAAAT
Found at i:2029683 original size:780 final size:783
Alignment explanation
Indices: 2028468--2030031 Score: 2303
Period size: 780 Copynumber: 2.0 Consensus size: 783
2028458 CAGTGATGCT
*
2028468 TTGGTATCGCAAGAAAAGCTTTTTTCCCACTATTTTTGATAGAATCAAAGCTTGTCTCTTAAATA
1 TTGGTATCGCAAGAAAAGCTTTTTTCCCACCATTTTTGATAGAATCAAAGCTTGTCTCTTAAATA
* * *
2028533 AGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAGGATTAAGCACTTTAAACATAGTCT
66 AGACAAACATGAATA--TATACAATTCCCCATTCTTTTCAAGATTAAGCACTTTAAACATAGTCT
* *
2028598 TCTCACTAAGATACACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTT
129 TCTCACTAAGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTGTTTTCCCAACAAATTT
* * * *
2028663 TTGTATGGTCAAAATTCATGCCTTAAATGAGCCAAATGTGGATACTAGTTTTGATCTTCATTCAT
194 TCGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
* * * * *
2028728 TTTGTGATTAGGCAGTATAAAAACATTCTCCTCTTCAAAATTACTGATATTAATGATTATCTTTT
259 TTCGTGATTAGGCACTATAAAAACAATCTCCTCTTCAAAATCAATGATATTAATGATTATCTTTT
*
2028793 GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
324 GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAG
* *
2028858 CATCGATACTCATAACAATCTCCACTCTTTTCATGATTCGGATCCAAAAACTCATTCTATTCATT
389 CATCGATACTCATAACAATCTCCACTCTTTCCATGATTCGGATCCAAAAACACATTCTATTCATT
*
2028923 AGGATACATGACAACGATGCTATGGTGTCGC-ACAAAAGCTTTTTTTCCACCATTTTTGATAGAA
454 AGGATACATGACAACGATGCTATGGTATCGCAACAAAAGCTTTTTTTCCACCATTTTTGATAGAA
** * ** *
2028987 TCAAAGTTTGTCTTTTAAATTCGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGAT
519 TCAAAACTTGTCTCTTAAATAAGACAAACACGAATACTTATACTATTCCCTATTCTTTTCAAGAT
** *
2029052 TAGGCACTTTAAACAAAGTCTTCTCACTAGGATACTTGATATTGGTGTTTTCGTTTCACAAGAAA
584 TAGGCACTTTAAACAAAGTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCACAAGAAA
* * * * *
2029117 GGTTGTTTTCCCAAGAAATTTTTGTATTGTCTAAATTCATGCCTTAAATGAGCCAAACGTGGACA
649 GGATGTTTTCCCAAGAAATGTTTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGACA
2029182 CTAGTTTTGATCATCATTCATTTTGTGATTAGGCACTATAAAAACATTCACCTCTTCAAGATTAC
714 CTAGTTTTGATCATCATTCATTTTGTGATTAGGCACTATAAAAACATTCACCTCTTCAAGATTAC
2029247 TGATA
779 TGATA
* * * * * * *
2029252 TTGGTATCGCAAGAAATGCTTTTCTTTCCACCGTTTTTTATAGAATTAAAGTTTGTCTCTTACAT
1 TTGGTATCGCAAGAAAAGCTTTT-TTCCCACCATTTTTGATAGAATCAAAGCTTGTCTCTTAAAT
** *
2029317 CCGACAAACATG-A-A-ATACAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTT
65 AAGACAAACATGAATATATACAATTCCCCATTCTTTTCAAGATTAAGCACTTTAAACATAGTCTT
* ** * * * * * *
2029379 CTC-TTTTGTATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTTCTAACCAATTT
130 CTCACTAAG-ATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTGTTTTCCCAACAAATTT
* *
2029443 TCGTAAGGTCAAAATTCGTGCCTCAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTCAT
194 TCGTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
* * * * *
2029508 TTCGTGATTAGGCACTATAAAAACAATCTCTTCTTTAAGATCAATGATATTGATGATTTTCTTTT
259 TTCGTGATTAGGCACTATAAAAACAATCTCCTCTTCAAAATCAATGATATTAATGATTATCTTTT
*
2029573 GCA-TGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCAACCCTTAAATAAGACAA
324 GCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAA
* * * * *
2029637 GCATTGATTCTCGTAACAATCTCCATTCTTTCCATGATTGGGATCCAAAAACACATTCTATTCAT
388 GCATCGATACTCATAACAATCTCCACTCTTTCCATGATTCGGATCCAAAAACACATTCTATTCAT
* ** * * * **
2029702 TAGGATGCATGACAGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTTTCACTGTTTTTGATAGA
453 TAGGATACATGACAACGATGCTATGGTATCGCAACAAAAGCTTTTTTTCCACCATTTTTGATAGA
2029767 ATCAAAACTTGTCTCTTAAATAAGACAAACACGAATACTTATACTATTCCCTATTCTTTTCAAGA
518 ATCAAAACTTGTCTCTTAAATAAGACAAACACGAATACTTATACTATTCCCTATTCTTTTCAAGA
* *
2029832 TTAGGCACTTTAAACATAGTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAA
583 TTAGGCACTTTAAACAAAGTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCACAAGAA
* *
2029897 ATGATGTTTTCCCATGAAATGTTTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAC
648 AGGATGTTTTCCCAAGAAATGTTTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGAC
* * * * *
2029962 ACTAGTTTTGATCTTCGTTTATTTTGTGATTAGGCACTATAAAAACATTCTCTTCTTCAAGATTA
713 ACTAGTTTTGATCATCATTCATTTTGTGATTAGGCACTATAAAAACATTCACCTCTTCAAGATTA
2030027 CTGAT
778 CTGAT
2030032 GTTGATGATT
Statistics
Matches: 694, Mismatches: 82, Indels: 11
0.88 0.10 0.01
Matches are distributed among these distances:
779 4 0.01
780 352 0.51
781 270 0.39
783 1 0.00
784 23 0.03
785 44 0.06
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (783 bp):
TTGGTATCGCAAGAAAAGCTTTTTTCCCACCATTTTTGATAGAATCAAAGCTTGTCTCTTAAATA
AGACAAACATGAATATATACAATTCCCCATTCTTTTCAAGATTAAGCACTTTAAACATAGTCTTC
TCACTAAGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTGTTTTCCCAACAAATTTTC
GTAAGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCATTT
CGTGATTAGGCACTATAAAAACAATCTCCTCTTCAAAATCAATGATATTAATGATTATCTTTTGC
ATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCA
TCGATACTCATAACAATCTCCACTCTTTCCATGATTCGGATCCAAAAACACATTCTATTCATTAG
GATACATGACAACGATGCTATGGTATCGCAACAAAAGCTTTTTTTCCACCATTTTTGATAGAATC
AAAACTTGTCTCTTAAATAAGACAAACACGAATACTTATACTATTCCCTATTCTTTTCAAGATTA
GGCACTTTAAACAAAGTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCACAAGAAAGG
ATGTTTTCCCAAGAAATGTTTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGACACT
AGTTTTGATCATCATTCATTTTGTGATTAGGCACTATAAAAACATTCACCTCTTCAAGATTACTG
ATA
Found at i:2030384 original size:475 final size:476
Alignment explanation
Indices: 2029252--2035411 Score: 7971
Period size: 475 Copynumber: 13.0 Consensus size: 476
2029242 ATTACTGATA
* * * * * *
2029252 TTGGTATCGCAAGAAATGCTTTTCTTTCCACCGTTTTTTATAGAATTAAAGTTTGTCTCTTACAT
1 TTGGTGTCGCAAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** *
2029317 CCGACAAACATG-A-A---ATACAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC
65 AAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC
** * * * * * * **
2029377 TTCTCTTTTGTATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTTCTAACCAATT
130 TTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATT
* * *
2029442 TTCGTA-AGGTCAAAATTCGTGCCTCAAATGAGCCAGACGTGGATACTAGTTTTGATCTTCATTC
195 TTTGTATA-GTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTC
* * * *
2029506 ATTTCGTGATTAGGCACTATAAAAACAATCTCTTCTTTAAGATCAATGATATTGATGATTTTCTT
259 ATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTT
* *
2029571 TTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCAACCCTTAAATAAGAC
324 TTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* *
2029635 AAGCATTGATTCTCGTAACAATCTCCATTCTTTCCATGATTGGGATCCAAAAACACATTCTATTC
388 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTC
* *
2029700 ATTAGGATGCATGACAGTGATGCT
453 ATTAGGATACATGACAATGATGCT
* * **
2029724 TTGGTATCGCAAGAAAAGCTTTTTTTTCACTGTTTTTGATAGAATCAAAACTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
2029789 AGACAAACACGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
* * * * *
2029854 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAATGATGTTTTCCCATGAAATGT
131 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
* * *
2029919 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGACACTAGTTTTGATCTTCGTTTAT
196 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
* * * *
2029984 TTTGTGATTAGGCACTATAAAAACATTCTCTTCTTCAAGATTACTGATGTTGATGATTTTCTTTT
261 TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
2030049 GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
326 GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * *
2030114 CATCGATTCTCGTAACAATCTCCACTCTTTTAATGATT-GGATCCAAAAACACATTCTATTCGTA
391 CATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATT
2030178 AGGATACATGACAATGATGCT
456 AGGATACATGACAATGATGCT
* * * *
2030199 ATGGTGTCGCAACAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATT
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
2030264 AGACAAACATAAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCT
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
* *
2030329 TCTCACTAGGATACATGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCATGAAA-TT
131 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
* ** * *
2030393 TTGTAAAGTCAAAATTTGTGCCTCAAATGAGCCAAACGTGGATACTAGTTTCGATTTTCATTCAT
196 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
* *
2030458 TTTGTGATTAGGCACAACAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
261 TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
* *
2030523 GCATTGAAATCTTTTCTTTGCCCTA--TTCCTTAAAATAAAAGTTCA-CCATTTAAATAAGACAA
326 GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAATAAGACAA
* * *
2030585 GCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAAACACATTTTATTCAT
390 GCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
* * *
2030650 TACGATACATGACTATGGTGCT
455 TAGGATACATGACAATGATGCT
* * * *
2030672 TTAGTGTCGTAAGAAAAGCTTTTTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * * * ** **
2030737 AGACAAACAAGAATAGTCATACTAATCTCCATTTTTTTCGAGATTAGGCGCCATAAATGTAG-CA
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-
* * ** * * * * **
2030801 TTCT-A-TAAGGATAGA-TATATTAATGCTTTTGTTTCGCTAGAATGGCTTTCTTCCC-ACCAAT
130 TTCTCACT-AGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAAT
* * * * * * *
2030862 TTTTGCGA-AGTTAAAATTCGTGCCTCAAATAAGCCAAACATGGAATA-AAGTTTTGATCTTCTT
194 TTTTG-TATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCAT
* * *
2030925 TCACTTTGTGATCAGGCACTATAAAAACATTCTCCTC-ATAAGATTAATGATATTGATGATTTTC
257 TCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTC
** *
2030989 TTTTGCACAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
322 TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
** * * *
2031054 CAAGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTT
387 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
* * * *
2031119 CATTAGGATACATGACTACGGTGTT
452 CATTAGGATACATGACAATGATGCT
* * * *
2031144 TTGGTATCGCAAGAAATGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
1 TTGGTGTCGCAAGAAAAGC-TTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** * ** * * **
2031209 CTGACAAACATGAAAACTCGTACAATTCCCCATTGCGATAGCAAGATTAGGCACTTTAAACATAG
65 AAGACAAACATGAATACTTATACTATTCCCCATT-C-TTTTCAAGATTAGGCACTTTAAACATAG
* * * * * **
2031274 TCTTCTCATTGGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTC-ACCAA
128 TCTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAA
* * * *
2031338 TTTTTGTA-AGGTCAAAATTCATGCCTCAATTGAGCTAGACGTGGATACTAGTTTTGATCTCCAT
193 TTTTTGTATA-GTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCAT
* * * *
2031402 TCATTTTGTGATTAGGCACCATAAAAACATTCTCTTCTTTATGATTAACGATATTGATGATTTTC
257 TCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTC
* * * *
2031467 TTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTAACCCTTCAATAAG
322 TTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
2031531 AGAAGCATCGATTCTCGTAACAATCGCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTAT
386 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTAT
*
2031596 TCATTAGGATACATGACAGTGATGCT
451 TCATTAGGATACATGACAATGATGCT
* * * *
2031622 TTGGTGTCACAAGAAAAACGTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
2031687 TGACAAACACGAATACATATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
* * * *
2031752 TCTCACTAGGATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCTCAAGAAATTT
131 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
* * * *
2031817 TTTTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
196 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
* * *
2031882 TTTGCGATTAGGCACTATAAAAA-ATTCTCCT-TTTCAAGATTACTGATATTGATGATTTTTTTT
261 TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTT-AAGATTAATGATATTGATGA---TTTTC
* * *
2031945 TTTTGCACTGAAATCTTTTCTTTGCTCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGA
322 TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * *
2032010 CAAGGATCTATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATT
387 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
*
2032075 CATTAGGATACATGACAGTGATGCT
452 CATTAGGATACATGACAATGATGCT
* *
2032100 TTGGTGTCACAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
2032165 AGACAAACATGAATACTTAGACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATTA-TC
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACA-TAGTC
* * * * *
2032229 TTCTCACTCGGATAGACGATATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCGAAGAAATT
130 TTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATT
* * * *
2032294 TTTTTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCA
195 TTTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCA
* *
2032359 TTTTGCGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTTTCTTT
260 TTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTT
* * * * * *
2032424 TGCAATAAAATCTTTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAA
325 TGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* **
2032489 GCATCAATTCTCGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
390 GCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
* *
2032554 TAGGATACACGACAGTGATG-T
455 TAGGATACATGACAATGATGCT
* * **
2032575 TTGGTATCGCAAGAAAAGCCTTTTTTCCACTGTTTTTGATAGAATCAAAACTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
*
2032640 AGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
* ** * * *
2032705 TCTCACTAGGATACATGATATTGGTGCTTTTATTTCGTAAGAAATGCTGTTTTCCCAAGAAATTT
131 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
*
2032770 TTGTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
196 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
*
2032835 TTTGTGATTAGGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTT
261 TTTGTGATTAGGCACTATAAAAA-CATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTT
** * **
2032899 TGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAACTG
325 TGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * * *
2032964 GTATCGATTCTCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATTCAT
390 GCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
* *
2033029 TACGATACATGA-ATATGGTGCT
455 TAGGATACATGACA-ATGATGCT
* * * *
2033051 TTGGTGTTGTAAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * ** **
2033116 AGACAAACA-CAA-A--TAGTACTAATCTCCATTTTTTTCGAGATTAGGCACCATAAATGTAG-C
66 AGACAAACATGAATACTTA-TACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC
* ** * * * * **
2033176 ATTCT-A-TAAGGATACA-GATTTTAATGCTTTCGTTTTGC-CGAAAAGGCTTTCTT-CCTACCA
130 -TTCTCACT-AGGATACACGATATTGGTGCTTTCGTTTCGCAAG-AAAGGCTTTTTTCCCAAGAA
* * * * * * *
2033236 ATTTTTATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTGGCAT-CAAGTTTTGATCTTCT
192 ATTTTTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGG-ATACTAGTTTTGATCTTCA
* * ** *
2033300 TTCACTTTGTCATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATGATATTAATGATTTT
256 TTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTT
* ** * *
2033365 CTTTCGCATAAAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAGGTTCATCCCTTAAATAAG
321 CTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* ** * **
2033430 ACATGCATCGATTCTCACAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCT
386 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTAT
* *
2033495 TCATTAGGATACATGACTATGGTGCT
451 TCATTAGGATACATGACAATGATGCT
* * ** * * * * *
2033521 TTGGTATCGCGAGAAATTCTTTTCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATAT
1 TTGGTGTCGCAAGAAAAGCTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** * * * * *
2033586 CCGACAAACATGAAAAGTCATACAATTCCCCATTCTTTTCATGATTAGGCACTTTAAACATAGTC
65 AAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC
* * * * * **
2033651 TTCTCATTGGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGGTTTTTTTCTC-ACCAATT
130 TTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATT
* * * *
2033715 TTCGTA-AGCTCAAAATTCATGCCTCAATTGAGCTAGACGTGGATACTAGTTTTGATCTTCATTC
195 TTTGTATAG-TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTC
* * * *
2033779 ATTTTGTGATTAGGCACCATAAAAACATTC-CCTTCTTTATGATTGACGATATTGATGATTTTCT
259 ATTTTGTGATTAGGCACTATAAAAACATTCTCC-TCTTTAAGATTAATGATATTGATGATTTTCT
* * * * *
2033843 TTTGC-TTGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAATGTTTAACCCTTCAATAAGA
323 TTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * *
2033907 GAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGGTCCAAAAACACATTTTATT
387 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
*
2033972 CATTAGGATACATGACAGTGATGCT
452 CATTAGGATACATGACAATGATGCT
* *
2033997 TTGGTGTCACAAGAAAAGCTTTTTTTCCACTG-TTTTGATAGAATCAAAGCTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
2034061 TGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
* * * * *
2034126 TCTCACTAGGATAGATGTTATTGGTGCTTTCGTTTCGCAAGAAATGCTGTTTTCCCAAGAAATTT
131 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
* * * * *
2034191 TTTTATGGTTAAATTTCATGTCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
196 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
*** *
2034256 TTTACAATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTAATGATTTTCTTTT
261 TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
* * * * * * *
2034321 GTAATAAAATCTTTTCTTTACCCTATTTTCCTCAAAATCAAAGTTCACCCCTTAAATATGACAAG
326 GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
** **
2034386 CATTAATTCTCGTAACGGTCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATT
391 CATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATT
*
2034451 AGGATACATGACAGTGATG-T
456 AGGATACATGACAATGATGCT
* **
2034471 TTGGTATCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAACTTGTCTCTTAAATA
1 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
*
2034536 AGACAAACATGAATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
66 AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
* * * * *
2034601 TCTCACTAGGATACATGATATTGGTGCTTTTGTTTCGTAAGAAATGCTGTTTTCCCAAGAAATTT
131 TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
* *
2034666 TTGTATGGTCAAAATTCATGCCTCAAATGAGCCAAACGTAGATACTAGTTTTGATCTTCATTCAT
196 TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
* * *
2034731 TTTGTGATTAGGCACTACAAAAACATTCTCCTCTTCAAGATTACTGATATTGATGATTTTCTTTT
261 TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
* * *
2034796 GCATTAAAATCTTTTCTTTGCCCTATTTTCCTAAAAAAT-GAAGTTCATCCCTTAAATAAGACAA
326 GCATTGAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
2034860 CCATCGATTCTCGTAATAATCTCCACT-TTTTCATGATTAGGATCCAAAAACACATTCTATTCAT
390 GCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCAT
2034924 TAGGATACATGACAATGATGCT
455 TAGGATACATGACAATGATGCT
* *
2034946 ATGCTGTCGCAAGAAACA-CTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
1 TTGGTGTCGCAAGAAA-AGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
2035010 TAGACAAACATGAATACTTATACTATTCCCCATTATTTTCAAGATTAGGCACTTT-AACTAAAGT
65 AAGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAAC-ATAGT
* * * *
2035074 CTTCTCACTAGGATACATGATATTGGTGCTTTCGTTTCGCAAGAAAGGGTTCTTTCCCATGAAA-
129 CTTCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAAT
* * *
2035138 TTTTGTA-AGGTAAAAATTCGTGCCTCAAATAAGCCAAACGTGGATACTAGTTTTGATCTTCATT
194 TTTTGTATA-GTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATT
* *
2035202 AATTTTGTGATTAGGCACTACAAAAACCA-TCTCCTCTTTAAGATTAATGATATTGATGATTTTC
258 CATTTTGTGATTAGGCACTATAAAAA-CATTCTCCTCTTTAAGATTAATGATATTGATGATTTTC
* * * ** *
2035266 TTTTGTACTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAAA
322 TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
** * * * * * *
2035331 CTGGTATCGATTCTCGTAACAATCTCCTTTCCTTTCAAGATTTGGATCCAAAAACACATTTTATT
387 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATT
*
2035396 CATTACGATACATGAC
452 CATTAGGATACATGAC
2035412 TATAGTCACC
Statistics
Matches: 4979, Mismatches: 632, Indels: 151
0.86 0.11 0.03
Matches are distributed among these distances:
469 2 0.00
470 319 0.06
471 231 0.05
472 244 0.05
473 267 0.05
474 594 0.12
475 1601 0.32
476 908 0.18
477 189 0.04
478 591 0.12
479 30 0.01
480 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (476 bp):
TTGGTGTCGCAAGAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT
TCTCACTAGGATACACGATATTGGTGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCAAGAAATTT
TTGTATAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATACTAGTTTTGATCTTCATTCAT
TTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTCTTTT
GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
CATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGATCCAAAAACACATTCTATTCATT
AGGATACATGACAATGATGCT
Found at i:2036489 original size:475 final size:475
Alignment explanation
Indices: 2035479--2049791 Score: 17282
Period size: 476 Copynumber: 30.3 Consensus size: 475
2035469 GCCGAAAACA
* * * * * * * * *
2035479 CTTTCTTCCTACCAATTTTTATAAAGTCAAAATTCATGCCTTAAATAACCCAAACGTCGCA-TCA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGT-GGATTCT
* * * **
2035543 AGTTTTGATCTTCTTTCACTTTGTCATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* * * *
2035608 ATATTAATGATTTTCTTTCGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTC
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* ** * * *
2035673 ATCCCTTAAATAAGACATGCATCGATTCTCACAACAGTCTCCATCCTTTTCAAGATTGGGATCGA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
** * * * * **
2035738 AAAACACATTCCCTTCACTAGGATACATGACTA-TGGTGCTTTGGTATCGCGAGAAATTCTTTTC
260 AAAACACATTCTATTCATTAGGATACATGAC-AGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-
* * * * ** * *
2035802 TTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACATGAAAACTCATACA
323 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* *
2035867 ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTGGGATACATGATATTG
388 ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTG
2035932 GTGCTTTGGTTTCGCAAGAAAGG
453 GTGCTTTGGTTTCGCAAGAAAGG
* * * * * * * * *
2035955 TTTTTTTCTCACCAATTTTCGTAAGGTCAAAATTCATGCCTCAATTGAGCTAGACGTGGATACTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* *
2036020 GTTTTGATCTTCATTCATTTTGTGATTAGGCACCATAAAAACATTC-CCTTCTTTATGATTAATG
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCC-TCTTTAAGATTAATG
* * *
2036084 ATATTGATGATTATCTTTTGC-TTGAAAATCTTTTCTTTGCCC-ATTTTTCTTAAAATCAATGTT
130 ATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * *
2036147 TAACCCTTCAATAAGAGAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGGTCC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
* *
2036212 AAAAACACATTTTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTT
259 AAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT
* * * * *
2036277 TTCCACTGCTTTTGATAGAATCAAAGCTTGTCTCTTAAATATGACAAACATGAATACTTATACTA
324 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * *
2036342 TTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGATAGACGATATTGA
389 TTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
* *
2036407 TGCTTTCGTTTCGCAAGAAATG
454 TGCTTTGGTTTCGCAAGAAAGG
* ** * ** * * * *
2036429 CTGTTTTCCCAAGAAATTTTTTTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGATACT
1 CTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* *
2036494 AGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAA-ATTCTCCT-TTTCAAGATTACT
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTT-AAGATTAAT
* ** *
2036557 GATATTGATGATTTTTTTTTTTGCGCTGAAATCTTTTCTTTGCTCTATTTT-CTTAAAATCAAAG
129 GATATTGATGA--TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
* * * *
2036621 TTCATCCCTTAAATAAGACAAGGATCTATTCTCGTAACAATCTCCATTCTTTTCATGATTGGGGT
192 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAT
* * *
2036686 CCAAAAACATATTTTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTT
257 CCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * *
2036751 TTTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACACGAATACTTAGAC
322 TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * *
2036816 TATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGATAGATGATATT
387 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATT
* * *
2036881 GGTGCTTTCGTTTTGCAAGAAATG
452 GGTGCTTTGGTTTCGCAAGAAAGG
** * ** * * * *
2036905 -TTGTTTTCCCAAGAAATTTTTTTATGGTCAAATTTCATGTCTCAAATGAGCCAAACGTGGATAC
1 CTT-TTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTC
* *
2036969 TAGTTTTGATCTTCATTCATTTTGCGATTAGGCACTATAAAAACATTCTCCT-TTTCAAGATTAT
64 TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTT-AAGATTAA
* * *
2037033 TGATATTGATGATTTTTTTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAG
128 TGATATTGATGA-TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
* * * * *
2037098 TTCATCTCTTAAATAAGACAAGGATCTATTCTCGTAACAATCTCTATTCTTTTCATGATTGGGAT
192 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAT
* * * * * *
2037163 CCAAAAGCACATTCTATTCAATAGGATACATGATAGTCATGCTTTGCTATCGCAAGAAAAGCTTT
257 CCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* ** * *
2037228 TTTTCCACTGTTTTTGATAGAATCAAAACTTGTCTCTTAAATAAGACAGACATGAATACTTATAC
322 TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * **
2037293 TATTCCCTACTCTTTTCAAGATTAAGCACTTTAAACATAGTCTTCTC-TCTAGGATACTGGATAT
387 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAT-TAGGATACACGATAT
* *
2037357 TGGTGCTTTCGTTTCGCAAGAAATG
451 TGGTGCTTTGGTTTCGCAAGAAAGG
* ** ** * * * *
2037382 CTGTTTTCCCAAGAAATTTTTGTATGGTCAAAATTCATACCTCAAATGAGCCAAATGTGGATACT
1 CTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
**
2037447 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTGCTG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* *
2037512 ATATTGATGATTTTCTTCTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTA
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * *
2037577 ATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAATCTCCACTCTTTTCATGATTGGGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * * *
2037642 AAAACACATTCTTTTCATTAGGATACATGACAATGATGCTATGGTGTTGCAACAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * *
2037707 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATTAGACAAACATGAATACTTATACTAT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * * ** *
2037772 TCCCCATTCTTTTCAAGTTTAGGCACATTAAACAAAGTCTTCTCGCTAGGATACATGATATTGGT
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGT
* *
2037837 GCTTTCGTTTCACAAGAAAGG
455 GCTTTGGTTTCGCAAGAAAGG
** * * * * *
2037858 CTTTTTTCCCATGAAATTTTGTAAGGTCAAAATTTGTGCCTCAAATGAGCTAAACGTGGATACTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * * * *
2037923 GTTTTGGTATCCATTCATTTTGTGATTAGGTACTATAAAAACTTTCTCCTCTTTAAGATTATTGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * * *
2037988 TATTGATGATTCTCTTTTGCGTTGAAATTTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA
131 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
** * * *
2038053 TCATTTAAATAAGACAAGCATTGATTCTCATAACAATCTCCATTCTTTTCAACATTGGGATCCAA
196 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * * *
2038118 AAACACATTTTATTCATTACGATACATGACAGTAATGCTTTGGTGTCGTAACAAAAGCTTTTTTT
261 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTT
* * *
2038183 CCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
326 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT
** * ** ** ** * * **
2038248 ATCCATTTTTTTCGGGATTAGGCACCATAAATGTAG-CATTCT-ATAAGGATACA-AATATTAAT
391 CCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC-TTCTCATTAGGATACACGATATTGGT
* *
2038310 GCTTTTGTTTCGCAAGAAATG
455 GCTTTGGTTTCGCAAGAAAGG
* * * *
2038331 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAATGTGGAATCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * * *
2038396 GTTTTGATCTT-ATTCACTTTGTGATTAGGCACTATAAAAATATTCTCCTCATTAATAGTAATGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * * * *
2038460 TATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTACG
131 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * *
2038525 TCCCTTAATTAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTCCTAGATTGGGATCCAA
196 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
** ** * * * *
2038590 AAACACATTCCCTTCATTAGGATACATGACTTTGGTGCTTTGGTGTCGTAAGAAATGTTTTTCTT
261 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TT
* *
2038655 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAACT-AGACAAACATGAATACTTATGCTA
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTCATACTA
** * * ** *
2038719 TTCTTCATTCTTTTTAAGATTAGGCACTTTAAACAAAGTCTTCTCGCTAGGATACATGATATTGG
389 TTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
* * **
2038784 T-TTGTTCGTTTCATAAGAAAGG
454 TGCT-TTGGTTTCGCAAGAAAGG
* ** * * * * *
2038806 CTTTTTTCCAATAAAATTTTTGTAAAGTCAAAATTCGTACCTCAATTAAGCCAAATGGGGATTCT
1 CTTTTTTCCCA-CCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * * *
2038871 AGTTTTGATCTTCACTCATTTTGTGATTAAGCACTGTAAAAACA-TCTCCTCGTTAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* * * * *
2038935 ATATTGAT--TTTTTTTTTGGGCGTTAAAATCTTTTCTTTACCCTATTTTCCTTGAAATCAAAGT
130 ATATTGATGATTTTCTTTT--GCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * **
2038998 TCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAATCTCCTTTGGTTTCAAGATTGGGATC
193 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC
* * *
2039063 CAAAAACACATTCTATTCATTAGGAGACATGACAGTGATGCTTTGGTATCGCAAGAAATGCTTTT
258 CAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * *
2039128 TGTT--GCCGTTTTGGATAGAATCAAA-CTTGTTCTCTTAAATAAGACAAACATGAATACTCTTA
323 T-TTCCACCGTTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAATACTCATA
* * * * * * * *
2039190 CTAGTCCCTATTTTTTTCAAGATTAGGCACCTTAAACACAGCCTTCTCGTAAGGATACACGATAT
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
** * *
2039255 TGACAG-TTTCGTTTCACAAGAAAGG
451 TG-GTGCTTTGGTTTCGCAAGAAAGG
* * **
2039280 -TTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTTGTAACTCAAATGAGCCAAACGTGGATTCT
1 CTTTT-TTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * * * * * *
2039344 AGTTTCGATCTTCACTCATTTCGTGATTAAGCAC-AGCAAAAACATTCTCCTCGTTAAGACTAAT
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTA-TAAAAACATTCTCCTCTTTAAGATTAAT
* * * *
2039408 GATGTTGATTATTTTTTTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
129 GATATTGATGA-TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
*
2039473 TCATCCTTTAAATAAGACAAGCATCGATTCTC-TCAACAATCTCCATTCTTTTCAAGATTGGGAT
193 TCATCCCTTAAATAAGACAAGCATCGATTCTCGT-AACAATCTCCATTCTTTTCAAGATTGGGAT
** * * ** * * * *
2039537 CCAAAAACACATTCCCTTCATTAGGATGCTTGACTTTGATGCTTTGGTG-CACATGAAATGTTTT
257 CCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * ** *
2039601 TCTTTCCACCGTTTTTGATATAATTAAAGTTTATCTCTTATATCCGACAAACATGAAAACTCATA
322 T-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* *
2039666 CAATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACACAGTCTTCTCATTAGGATACACGATAT
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
* *
2039731 TTGTGCTTTGGTTTCGCAAGAAAGA
451 TGGTGCTTTGGTTTCGCAAGAAAGG
* * * * *
2039756 CTTTTTTCCCACCAATATTTATGAAGTCAAAATTCATGCCGCAAATGAGCCAAACGTGGATTCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* *
2039821 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTGTAAAAACATTCTCCTATTTAAGATTAATGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
** *
2039886 TATTGATGATTTTCTTTT-CCGTGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
131 TATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
** * *
2039950 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAATCTCCATTCCTTTCAAGATTGGGATTCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * * * *
2040015 AAAACATATTCTGTCCATTAGGACACATGACAATAATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * * * * *
2040080 TTCATCGTTTTTAATAGAATCAAAGTTGGTCTCTTAAATCAGACAAACATGAATACTCGTACTAT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * *
2040145 TTCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCCCATTAGGATACACGATATTAGT
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGT
*
2040210 GCTTTGGTTTCTCAAGAAAGG
455 GCTTTGGTTTCGCAAGAAAGG
* * * * * *
2040231 TTTTTTTCCCACCAATTTTTGTAAAGTCAAAGTTTGTGCCTCAAATGAGCCAAACATGAATTTTT
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGA-TTCT
* *
2040296 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACGTTCTCCTCATTAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* **
2040361 ATAATGATGATTTTCTTTTGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * *
2040426 A-ACCTTAAATAAAACAAGCATCGATTATTGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * * *
2040490 AAAACCCATTCTGTTGATTAGGATATATGATAGTGATGCTTTGGT-TCGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
*** * * * * *
2040554 TTTGCCGTTTTTTATAAAATCATAGCTGGTCTCTTAAATCAA-ACAAACATGAATACTCATACTA
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATACTA
* * * **
2040618 TTTCCCATTCTTTTCAAGATTAGGCACTTTAAACGTAGTCTTTTTGTTAGGATACACGATATTGG
389 TTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
2040683 TGCTTTGGTTTCGCAAGAAAGG
454 TGCTTTGGTTTCGCAAGAAAGG
* * * *
2040705 CTTTTTTCCCACTAATTTTTGTAAAATCAAAATTCATGCCTAAAATGAGCCAAACGTGGATTCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * *
2040770 GTTTTGATTTTCATTCATTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTAAGATTAATGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * *
2040835 TGTTGATGATTTTCTTTTGCATTAAAATCTTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTT
131 TATTGATGATTTTCTTTTGCATTGAAATC--TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * *
2040900 CTTCCCCTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
*** * * * *
2040965 AAAAACACATTCCCGTCATTAGGATAAATGGA-ATTGATGCTTTGGTGTCGCAAGACATGCTTTT
259 AAAAACACATTCTATTCATTAGGATACAT-GACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * *
2041029 CTTTCTACCGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATGCTTATA
323 -TTTCCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* * * *
2041094 CTATTCCCCATTCTTTTCAACATTAGGCACTTCAAACATAGTCTTCTCACTATGATACACGATAT
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
*
2041159 TGGAGCTTTGGTTTCGCAAGAAAGG
451 TGGTGCTTTGGTTTCGCAAGAAAGG
** ** *
2041184 CTTTTTTCTAAAGAAATTTTTGAAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATT-T
1 CTTTTTTC-CCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* *
2041248 CAGTTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAAT
65 -AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAAT
** *
2041313 GATATTGATGATTTTCTTTTGTGTTGAAATCTTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGT
129 GATATTGATGATTTTCTTTTGCATTGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * *
2041378 TCGTCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTGGGATC
193 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC
* ** * ** * * * *
2041443 AAAAAACACATTCCCTTCATTAGAATACATGACTTTAATGCTTTGGTGTTGCAACAAATGCTTTC
258 CAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT-
* * * * * * **
2041508 CTTTCTACCGTTTCTGATAGAATCAAAGTTTATCTCCTAAGTCTGACAAACATGAATACTCATAC
322 TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * *
2041573 TAATCTCCATTCCTTTCAAGATTAGGCACTTTAAAGATAGTCTTCTCATTAGGATACATGATATT
387 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATT
* *
2041638 GGTGCTTTGGTTTTGTAAGAAAGG
452 GGTGCTTTGGTTTCGCAAGAAAGG
* *
2041662 ------------------TTGTAAGGTCAAAATTCGTGCCTCAAATAAGCCAAACGTGGATTCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * *
2041709 GTATTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAACGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * * *
2041774 TATTGATGATTTTCTTTCGCA-TGAAAATCTTTTCTTCGCCTTATTTTCCTTAAAATCAAAGTTA
131 TATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
2041838 ATCGCTT-AA-AAGACAAGCATCAATTCTCATAACAATCTCCATTCTTTTCATGTTTGGGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* *
2041901 AAAACACATTCTATTCATTAGAATACATGACAGTGATGGTTTGGTGTCGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
** * * *
2041966 TCCACTATTTTTTATAGAATC-AAGTTTGTCTCTTAAATAAGACAAACATGTATACTTATACTAT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * * * * * *
2042030 TTCCCATTCTTTTAAAGATTAGACACTTTAAACATAGTCTTGTCACTCGGATACATGATATTGGT
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGT
* * * *
2042095 ACTTTGGATTCACAGGAAAGG
455 GCTTTGGTTTCGCAAGAAAGG
* **
2042116 CTTTTTTCCCACCAATTTTTGTAAAGT-ATAAGTTCGCACCTCAAATGAGCCAAACGTGGATTCT
1 CTTTTTTCCCACCAATTTTTGTAAAGTCA-AAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * *
2042180 AGTATTGATCTCCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
*
2042245 ATATTGATGATTTTCGTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
** * * *
2042310 ATCATTTAAATAAGACAAGCATCGATTCTCATAACAATCTCC-TCCTTTTCAAGATTGAGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * *
2042374 AAAACACATTTTATTCATTAGGATACATAACAGTGATGCTTTGGTGTCGAAAGAAAAACTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * * * *
2042439 TCCACCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATAGTCATACTAA
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
** *** ** ** * * * ***
2042504 TCTCCGGTT-TTTTTGGGATTAGGCACCATAAATGTAGCCTTCT-ATAAAGATACA-GATATCAA
390 TC-CCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
*
2042566 TGCTTTTGTTTCGCAAGAAAGG
454 TGCTTTGGTTTCGCAAGAAAGG
* * * * *
2042588 CTTTCTTCCTACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAACGTAGAATCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * *
2042653 GTTTTGATCTTCATTCACTTTGTGATTAGGAACTATAAAATCATTCCCCT-TATTAAGATTAATG
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT-TTAAGATTAATG
* * * * *
2042717 ATATTGATGATTTGCTTTCGCATGGAAATCTTTTCTCTGCCCTATTTTCCTTAAAATCAAAGTAC
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-T
* ** *
2042782 CA-CCCTTAATTAAGACAAGCATCGATTCTCACAACAATCTCCATTCCTTTCAAGATTGGGATCC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
** * ** * * *
2042846 -AAAACACATTCCCTTTATTAGGATACATGACTTTGGTGCTTTGGTGTCACAAGAAATGCTTTTC
259 AAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-
* * * * *
2042910 TTTCCACCGTTTCTGATAGAATCAAAGTTTGCCTCTTAAATCAGAAAAACATGAAAACTCATACT
323 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
*
2042975 ATTCTCCCATTATTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATT
388 ATTC-CCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATT
*
2043040 GGTGCTTTGGTTTTGCAAGAAAGG
452 GGTGCTTTGGTTTCGCAAGAAAGG
* * * * * * * *
2043064 TTTTTTTCCCACCAATTTTTGTAAGGTCAAAATTCATGCCTCAAATGAGCTAGATGTGGATACTG
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* *
2043129 GTTTTGATCTTCATTCATTTTGTGATTAGGCAC-ATAAAAACATTCTCTTCTTTAAGATTAACGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* *
2043193 TATTGAAGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTGA
131 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
2043258 TCCCATAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTC-TTCCTAAGATTGGGATCCA
196 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC-AAGATTGGGATCCA
* *
2043322 AAAACACATTCTATTCATTAGGATACATGACAGTGAAGCTTTGGTGTTGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * * *
2043387 TCCACCATTTTTGATAAAATCAAAGTTTGTCTCTGAAACT-AGACAAACATGAATACTTATACTA
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTCATACTA
* * * * *
2043451 TTCCCTATTCTTTTTATGATTAGGCACATTAAACAAAGTCTTCTCATTAGGATACACGATATTGG
389 TTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
* *
2043516 TTCGTTT-GTTTCGAAAGAAAGG
454 TGC-TTTGGTTTCGCAAGAAAGG
* ** * *
2043538 CTTTTTTCTCATGAAATTTTTGTAAAGTCAAAATTTGTGCCTCAAATGAGCCAAACATGGATTC-
1 CTTTTTTCCCA-CCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
** * * *
2043602 --TTTTGATCTTCACCCATTTTGTGATTAAGCACTATAAAAACA-TCTCATCGTTAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* * *
2043664 ATATTGAT--TTTTTTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTC
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* ** * *
2043727 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAATGGTTTCAAGATTGGAATCAA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* *
2043792 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTATCGTAAGAAAAGC-TTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
*** * * *
2043856 TCTGTCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCTTACTAT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * * * * *
2043921 TCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGCCTTCTCGTAAGGATACATGATATTGAC
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTG-G
* * *
2043986 AG-TTTCGTTTCACAAGAAAGG
454 TGCTTTGGTTTCGCAAGAAAGG
* * * *
2044007 -TTTTCTTTCCACCAATTTTTGTAGAGTCAAAGTTTGTGCCTCAAATGAGCCAAACGTGGATTCT
1 CTTTT-TTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * ** * * *
2044071 AGTTTCGATCTTCACTCATTTCATGATTAAGCAC-AGTAAAAACATTC-CC-CTTGTCAAAACTA
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTA-TAAAAACATTCTCCTCTT-T-AAGATTA
* * * *
2044133 ATGATATTGAT-TTTTTTTTTTGCGTTGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
127 ATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
* * ** * *
2044197 TTCAACCTTTAAATAAGACAAGTGTCGATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGAT
192 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAT
*
2044262 CCAAAAACACATTCTGTTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
257 CCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* ** * * ** *
2044327 TTATTTCGTCGTTTTTTATAGAATCAAAGTTGGTCTCTTAAATCTGACAAACATGAATACTCGTA
322 TT-TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* *
2044392 CTATTCCCCATTCTTTTCAGGATTAGGCACTTTAAACATAGTCTTCCCATTAGGATACACGATAT
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
*
2044457 TGGTGCTTTGGTTTCTCAAGAAAGG
451 TGGTGCTTTGGTTTCGCAAGAAAGG
* * * * * *
2044482 CTCTTTTCCTACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACATGAATTTTT
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGA-TTCT
* *
2044547 AGTTTTGATGTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* * * *
2044612 ATATTGATGATTTTCTTCTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTT
130 ATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* *
2044677 AT-CCTTAAATAAGACAACCATCGATTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * *
2044741 AAAATACATTCTGTTCATTAGGATACATGATAGTGATGCTTTGGT-TCGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
** * * * * *
2044805 T-TGCCGTTTTTTATAGAATCATAGCTGGTCTCTTAAATCAGACAAACATGAATACTCATACTAT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * * * *
2044869 TTCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTATTCTTATTAGGATACATGATATGGGT
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGT
2044934 GCTTTGGTTTCGCAAGAAAGG
455 GCTTTGGTTTCGCAAGAAAGG
* * * *
2044955 CTCTTTTCCCACCAATTTTTGTAAAGTCAAAATTCATACCTAAAATGAGCCAAACGTGGATTCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * *
2045020 GTTTTGATTTTCACTGATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * * *
2045085 TGTTGATGATTTTCTTTTGCATTAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATTAAAGTTCA
131 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * **
2045150 TCCCCTAAATAAGACAAGTATCGATTCTAATAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
196 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* ** * * * *
2045215 AAACATATTCCCTTCGTTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGACAAGCTTTTCTT
261 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TT
* * *
2045280 TACACCGTTTTTTGATAGAATCAAAGTTTGTCTCATAAATAAGACAAACATGAATTA-TTATACT
325 TCCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TACTCATACT
* * * * *
2045344 ATTCCCCATTCCTTTCGACATTAGGCACTTTAAACATAGTCTTCTCACTATGATACACGATATTG
388 ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTG
*
2045409 GTGCTTTGGTTTTGCAAGAAAGG
453 GTGCTTTGGTTTCGCAAGAAAGG
* ** * * *
2045432 CTTTTTTCACAAGAAATTTTTGAAAAGTCAAAATTCGTGCCTCGAATGAGCTAAACGTGGATT-T
1 CTTTTTTC-CCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * * * *
2045496 CAGTTTCGATCTTCAATCATTTTGTGATTAGGCACAATAAAAACATTCTTCTCATTAAGATTAAT
65 -AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAAT
**
2045561 GATATTGATGATTTTCTTTTGTGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
129 GATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * *
2045626 CGTCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTGGGATCA
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
** ** * *
2045691 AAAAACACATTCCCTTCATTAGGATACATGACTTTAATGCTTTGGTG-CAGCAAGAAATGCTTTC
259 AAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTC-GCAAGAAAAGCTTT-
* * * * * *
2045755 CTTTCCACCGTTTCTGATAGAATCAAAGTTTTTCTCTCAAGTCTA-ACAAACATGAATACTCATA
322 TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATA
* * * *
2045819 CCAATCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACATGATAT
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
*
2045884 TGGTGCTTTGGTCTCGCAAGAAAGG
451 TGGTGCTTTGGTTTCGCAAGAAAGG
* * *
2045909 -TTTTTATACCACCAATTTTTGTAAGGTCAAAATTCTTGCCTCAAATGAGCCAAACGTGGATTCT
1 CTTTTT-TCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * * *
2045973 AGTATTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAATATTCTCCTCATTAAGATTAATG
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
* * *
2046038 ATATTGATGATTTTCTTTCG-A-TGAAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCAAAGTT
130 ATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * * * *
2046101 CATCGCTTAAATATGACAGGCATCGATTCTCATAACAATTTCCATTCCTTTCAAGTTTCGGATCC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
* * * * *
2046166 AAAAACACAATCTATTCATTAGAATACATGACAGTGATGGTTTGTTGTTGCAAGAAAAGCTTTTT
259 AAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT
*** * *
2046231 TTCCATTATTTTTGATAGAATC-AAGTTTGTCTCTTAAATAAGACAAACATGTATACTTATACTA
324 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * * *
2046295 TTCCCCATTCTTTTTAAGATTAGGTACTTTAAACAAAGTCTTCTCACTAGGATACACAATATTGG
389 TTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
* * ** *
2046360 TTCGTTCATTTCGTAAGAAAGG
454 TGCTTTGGTTTCGCAAGAAAGG
** *
2046382 CTTTTTTCCCATGAAATTTTTTGTAAAGTCAAAATTCGTGCCTCAAATGTGCCAAACGTGGATTC
1 CTTTTTTCCCA-CCAA-TTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTC
2046447 TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC-CCTTCTTTAAGATTAA
64 TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCC-TCTTTAAGATTAA
*
2046511 TGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAT
128 TGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * ***
2046576 TCATCCCTT--A-AAGACAAGCATCGATTCTTGTAACAATCTCCATTCTTTCCATTTTTGGGATC
193 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATC
* *
2046638 CAAAAACACATTCTATTCATTAGGATACATGAGAGTGATGCTTTGGTGTCACAAGAAAAGCTTTT
258 CAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * * *
2046703 TTTGCTCTGTTTTTGATAGAATCAAAGTTTATCTCCTAAACT-TGACAAACATGAATACTTATAC
323 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACATGAATACTCATAC
* * * *
2046767 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTTTTCTCACTAGAATACATGATATT
387 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATT
* **
2046832 GGTGCTTTTGTTTTACAAGAAAGG
452 GGTGCTTTGGTTTCGCAAGAAAGG
** * * *
2046856 CTTTTTTCCCAAGAAATTTTTGTAAGGTTAAAATTCGTGCCTCAAATGAGCCAAACATGGATAT-
1 CTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGAT-TC
*
2046920 TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGACTAAT
64 TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAAT
* * *
2046985 GATATTGATGATTTTATTTTGCATTGAAATCTTTTCTTTGCCCAATTTTTCTTAAAATCAAAGTT
129 GATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* *
2047050 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATGTTCATTCTTTTCAAGATTGGGATCC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
* *
2047115 AAAAATACAATT-TATTCATTAGGATACATGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTTT
259 AAAAACAC-ATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * *
2047179 TTTCCACCATTTTTGATAGAATCAAAGGTTGTCTCTTAATTAAGACAAACATGAATAGTCATACT
323 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * *
2047244 ATTCCCCATT-TTCTTCAAGATTTGGTACTTTAAACATAGTCTTCTCACTAGGATACACGATATT
388 ATTCCCCATTCTT-TTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATT
*
2047308 GGTGCTTTGGATTCGCAAGAAAGG
452 GGTGCTTTGGTTTCGCAAGAAAGG
* * * * * * * *
2047332 CATTTTTCCCACTAATTTTTATAAAGTCTAAGTTCGCGCCTCAAATAAGCCAAACGTAGAATT-T
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGT-GGATTCT
**
2047396 AGCATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCT-TATTAAGATTAAT
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT-TTAAGATTAAT
*
2047460 GATATTGATGATTTTCCTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
129 GATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * **
2047525 CATCCCCTAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCTTTTCAAGATTGGGATCC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
** * * * * * * *
2047590 AAAAACACATTTTCCCTTCATTAGGATACCTGGCATTGATGCTTTGATATCGTAAGAAATGCTTT
259 AAAAACACA--TTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * ** *
2047655 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTGCTTGTG
322 T-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* * * * * * * *
2047720 CTATTCCCTATTCTTTTGAGGATTAGGCATTTTAAGCATTGTCTTCTCATTAGGATACGCGATAC
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
*
2047785 TGGTGCTTTGGTTTTTCTCAAGAAAGG
451 TGGTGCTTTGG--TTTCGCAAGAAAGG
* * * * * *
2047812 CTTTTTTCTCACCAATTTTTGTAAAGTCTAACTTCGCGCCTCAAATGAGTCAAGCGT-GATTCTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * * * *
2047876 CTATTGATTTTCATTCATTTTGTGATT-----CTGTAAAAACATTCTCCTCATTAAGATTAATGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * * *
2047936 TATTGGA-GATTTTCTTTCGCAGTGAAATCTTTTCTTTGTCCTATTTTCCCTAAAATCAAAGTTC
131 TATT-GATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* *
2048000 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTTAAGATTGGGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * *
2048065 AAAACACATTCTATTCATTAGGATACATGACAGTGATACATTCGTGTCGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* * *
2048130 TCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACATGAATACTTATACTAT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * * * *
2048195 TCCACTTTCTTTTCCAGATTAGGCACTTTAAACATAGTCTTCTCACT-GTGATACGCGATATTGG
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAG-GATACACGATATTGG
* * * *
2048259 TACTTTGGTTTCACATGGAAGG
454 TGCTTTGGTTTCGCAAGAAAGG
** * *
2048281 CTTTTTTCCCAAGAGATTTTTGTAAAGTCAAAATTCGTACCTCAAATGAGCCAAATGTGGATTCT
1 CTTTTTTCCCACCA-ATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCT
* * * * *
2048346 AGTTTTCATCTTCATTTATTTTGTGATTAGGCACAATAAAAACATTCT-CTTTATTAAGATGAAT
65 AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT-TTAAGATTAAT
* ** * *
2048410 GATATTGTTGATTTTCTTTTGTGTTGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTA
129 GATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* ** * *
2048475 CATCCCTTAAATAAGACAAGCATCGATTGTCGCGACAATCTCCATTATTTTCAA-AGTTGGAATC
194 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA-TTGGGATC
* * ** * *
2048539 AAAAAACACATTCCATTCATTAGGATACATGACTTTGATGCTTTGGTGCCGCAAGAAATGCTTTC
258 CAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTT-
* * * * *
2048604 CTTTT-CACCATTTCTGATAGAATCAAAGTTTATCTCTTAAATCAGACAAACATGAATGCTCATA
322 -TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* * * *
2048668 CTATTCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTTTTCTAATTAGGATACATGATAT
386 CTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
2048733 TGGTGCTTTGGTTTCGCAAGAAAGG
451 TGGTGCTTTGGTTTCGCAAGAAAGG
* * *
2048758 CTTTTTTCTCACCAATTTTTGTAAAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCCA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* *
2048823 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTAT--AAA-A------TC--AAAGTTTAATGA
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* * *
2048877 TATTGATGATTTTCTTTGGCA-TGAAAATCATTTCTTTGCCCTATTTTCGTTAAAATCAAAGTTC
131 TATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * *
2048941 ATCCCATAAATAAGACAAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGGTTGGGATCCA
195 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * ** *
2049006 AAAGCACATTCTATTAATCGGGATACATGACTGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
260 AAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTT
* ** * * * * * *
2049071 TTCGTCGTTTTTGATAGAATCGAAGTTTATCTTTTAAATAGGACAAACATGAATAGTCATACTAA
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAT
* * * * ** * * * * *
2049136 TCTCTATTCTTTTCTAGATTAGGCACTATAAATGTAGTGTTC-CTATAAAGATACAAGATATTGA
390 TCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC-ATTAGGATACACGATATTGG
* **
2049200 TGCTTTCGTTTCATAAGAAAGG
454 TGCTTTGGTTTCGCAAGAAAGG
* * * * * * *** * * *
2049222 CTTTCTTCCTAACAATTTTTTTAAAGTCAAAGTTCGTGCCTCGAGCAAGCTAAATGTGGATTTTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
* * *
2049287 GTTTTGATCTTCATTCATTTTGTGATTTGGCACTACAAAAACATTCTCCTCATTAAGATTAA-G-
66 GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
* *
2049350 ----GAT-A------TTGGC---G--A--TTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCA
131 TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * *
2049397 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTTCATTCTTTTCAAGATTAGGATCTAA
196 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* **
2049462 AAATACATTCCCTTCATTAGGATAC----C--TGA--CTTT-G-GT----------GCTTTTCTT
261 AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TT
* * * *
2049507 TCCACCGTTTTTGCTAGAATAAAAGTTTGTCTCTTAAATCAA-ACAAACATGAAAAGC-CGTACT
325 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATA-CTCATACT
* *
2049570 ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATGGTCTTCTCATTAGGGTACACGATATTG
388 ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTG
2049635 GTGCTTTGGTTTCGCAAGAAAGG
453 GTGCTTTGGTTTCGCAAGAAAGG
* * * * * *
2049658 TTTTTTTCCCACCAATTTTCGTAAGGTCAAAATTCGTGGCTCAAATGAGCCAGACGTGGATACTA
1 CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
** * *
2049723 GTTTTGAT-TGTCATTCATTTCATGATTAGGCACTATAAAAACATTCTCTTCTTTAAGATTAACG
66 GTTTTGATCT-TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATG
2049787 ATATT
130 ATATT
2049792 AACGATAAAG
Statistics
Matches: 11947, Mismatches: 1674, Indels: 466
0.85 0.12 0.03
Matches are distributed among these distances:
435 7 0.00
436 220 0.02
437 3 0.00
445 2 0.00
446 1 0.00
447 4 0.00
449 3 0.00
451 1 0.00
454 106 0.01
455 127 0.01
456 100 0.01
457 3 0.00
458 38 0.00
459 126 0.01
460 2 0.00
462 5 0.00
463 4 0.00
464 209 0.02
465 171 0.01
466 3 0.00
467 1 0.00
468 57 0.00
469 155 0.01
470 200 0.02
471 190 0.02
472 888 0.07
473 1407 0.12
474 1105 0.09
475 2169 0.18
476 2594 0.22
477 988 0.08
478 548 0.05
479 315 0.03
480 195 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (475 bp):
CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAAACGTGGATTCTA
GTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGA
TATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
AAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTT
CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATT
CCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTG
CTTTGGTTTCGCAAGAAAGG
Found at i:2051395 original size:2 final size:2
Alignment explanation
Indices: 2051388--2051429 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
2051378 TTCATGGAAG
*
2051388 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2051430 GTTGAATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2053738 original size:156 final size:153
Alignment explanation
Indices: 2053055--2053813 Score: 425
Period size: 159 Copynumber: 4.8 Consensus size: 153
2053045 AATGTTCATC
* * * * * * * *
2053055 CCTTAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCTTTTCAAGATT-GAG-ATCCAA
1 CCTTAAATCAGACAAACATGAATACTCA-TACTATTTCCATTCTTTTCAAGATTAG-GCATCTAA
* * *
2053118 AAACACATTCTGTTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTAT
64 AAATACATTCT-TTCATTAGGATACATGATAGTGATGCTTTGGT-TCGCAAGAAAAGC-TCTT-T
*
2053183 TTCGTCGTTTTTTATAGAATCAAAGTTGGT
125 TTCGCCGTTTTTTATA-AATCAAAGTTGGT
* * * * *
2053213 CTCTTAAATCTGACAAACATGAATACTCGTACTATTCCCCATTCTTTTCAGGATTAGGCACTTTA
1 C-CTTAAATCAGACAAACATGAATACTCATACTATT-TCCATTCTTTTCAAGATTAGGCA-TCTA
* * * * * * * *
2053278 AACAT--AGTCTTCCCATTAGGATACACGATATTGGTGCTTTGGTTTCTCAAGAAAGGCTCTTTT
63 AAAATACATTCTT-TCATTAGGATACATGATAGTGATGCTTTGG-TTCGCAAGAAAAGCTCTTTT
* * ** * *
2053341 CCTACCAATTTTTGTAAAGTCAAAGTTCGT
126 TC-GCCGTTTTTTATAAA-TCAAAGTTGGT
* * * ** * ** **
2053371 GCCTCAAATGAGCCAAACATGAATTTTTAGTTTTGATGTT-CATTCATTTT-GTGATTAGGCA-C
1 -CCTTAAATCAGACAAACATGAATACTCA-TACT-AT-TTCCATTC-TTTTCAAGATTAGGCATC
* * * * ** * * *
2053433 TATAAAA-ACATTCTCCTCATTAAGATTA-ATGATATTGATGATTTTCTTCTGCATGGAAATCT-
61 TA-AAAATACATTCT-TTCATTAGGA-TACATGATAGTGATGCTTTGGTTC-GCAAGAAAAGCTC
* * **
2053495 TTTCTTTGCCCTATTATCCTTA-AAATCAAAGTTTAT
122 TTT-TTCGCCGT-TT-T--TTATAAATCAAAGTTGGT
* * * ** * * * *
2053531 CCTTAAATAAGACAACCATCG-ATTCTTGTAACAATCTCCATTCTTTTCAAGATT-GGGATCCAA
1 CCTTAAATCAGACAAACAT-GAATACTCAT-ACTATTTCCATTCTTTTCAAGATTAGGCATCTAA
*
2053594 AAATACATTCTGTTCATTAGGATACATGATAGTGATGCTTTGGTTCGCAAGAAAAGCTATTTTTC
64 AAATACATTCT-TTCATTAGGATACATGATAGTGATGCTTTGGTTCGCAAGAAAAGCTCTTTTTC
* *
2053659 GCCGTTTTTTATAGAATCATAGCTGGT
128 GCCGTTTTTTATA-AATCAAAGTTGGT
*
2053686 CTCTTAAATCAGACAAACATGAATACTCATACTATTTCCCATTCTTTTCAAGATTAGGCACTTTA
1 C-CTTAAATCAGACAAACATGAATACTCATACTATTT-CCATTCTTTTCAAGATTAGGCA-TCTA
* * * *
2053751 AACATAGTATTC-TT-ATTAGGATACATGATA-TGGGTGCTTTGGTTTCGCAAGAAAGGCTCTTT
63 AAAATA-CATTCTTTCATTAGGATACATGATAGT-GATGCTTTGG-TTCGCAAGAAAAGCTCTTT
2053813 T
125 T
2053814 CCCACCAATT
Statistics
Matches: 445, Mismatches: 113, Indels: 87
0.69 0.18 0.13
Matches are distributed among these distances:
153 3 0.01
154 1 0.00
155 18 0.04
156 65 0.15
157 59 0.13
158 113 0.25
159 153 0.34
160 22 0.05
161 9 0.02
162 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (153 bp):
CCTTAAATCAGACAAACATGAATACTCATACTATTTCCATTCTTTTCAAGATTAGGCATCTAAAA
ATACATTCTTTCATTAGGATACATGATAGTGATGCTTTGGTTCGCAAGAAAAGCTCTTTTTCGCC
GTTTTTTATAAATCAAAGTTGGT
Found at i:2053902 original size:949 final size:944
Alignment explanation
Indices: 2051746--2054747 Score: 4060
Period size: 949 Copynumber: 3.2 Consensus size: 944
2051736 TAGGGGTGTT
* *
2051746 GCAAGAAAAGCTTTT-TTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTCAAA-CTAGACAA
1 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATC-AGACAA
* * * * *
2051809 ACATGAATACTTATACTATTCCCTATTCTTTTTATGATTAGGCACATTAAACAAAGTCTTCTCAT
65 ACATGAATACTCATACTATTCCC-ATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAT
* * * **
2051874 TAGGATACACGATATTGGTTCGTTT-GTTTCGAAAGAAAGGCTTTTTTCCCATGAAATTTTTGTA
129 TAGGATACATGATATTGGTGC-TTTGGTTTCGCAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTA
** *
2051938 AAGTCAAAATTTGTGCCTCAAATGAGCCAAACATGGATTC---TTTTGATCTTCACTCATTTTGT
192 AAGTCAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCACTCATTTTGT
* *
2052000 GATTAAGCACTATAAAAACA-TCTCATCGTTAAGATTAATGATATTGAT--TTTTTTTTTGCGTT
257 GATTAGGCACTATAAAAACATTCTCCT-GTTAAGATTAATGATATTGATGATTTTTTTTTGCGTT
*
2052062 GAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
321 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * ** *
2052127 ATTCTCGTAACAATCTCCAATGGTTTCAAGATTGGAATCAAAAAACACATTCTATTCATTAGGAT
386 ATTCTCATAACAATCTCCATTCTTTTCAAGATTGG-ATCCAAAAACACATTCTATTCATTAGGAT
* * *
2052192 ACATGACAGTGATGCTTTGGTATCGTAAGAAAAGCTTTTTTCT-GTCGTTTTTTATAGAATCAAA
450 ACATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCGTCGTTTTTTATAGAATCAAA
* * * *
2052256 GTTTATCTCTTAAATAAGACAAACATGAATACTCTTACTATTCCCTATTCTTTTCAAGATTAGGC
515 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGC
* * * * ** * * *
2052321 ACTTTAAACATAGCCTTCTCGTAAGGATACATGATATTGACAG-TTTCGTTTCACAAGAAAGGTT
580 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTG-GTGCTTTGGTTTCTCAAGAAAGGCT
* * * *
2052385 TTCTTTCCACCAATTTTTGTAGAGTCAAAGTTTGTGCCTCAAATGAGCCAAACGTGGATTCTAGT
644 TT-TTTCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACATGGATTTTAGT
* ** * * ** * * *
2052450 TTCGATCTTCACTCATTTCATGATTAAGCACAGTAAAAACATTCCCCTTGTCAAAACTAATGATA
708 TTCGATCTTCAATCATTTTGTGATTAGGCACA-TAAAAACATTCTCCTCATTAAGATTAATGATA
** * *
2052515 TTGATTTTTTTTTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAAC
772 TTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
*
2052580 CTTTAAATAAGACAAGCGTCGATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
837 C-TTAAATAAGACAAGCATCGATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAA
* * *
2052645 ACACATTCCCTTCATTATGATGCTTGACTTTGATGCTTTGGTGT-
901 ACACATTCCCTTCATTAGGATACATGACTTTGATGCTTTGGT-TC
* * * *
2052689 GTAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTGTTAAATCAGACAAA
1 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATCAGACAAA
* *
2052754 CTTGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATT
66 CATGAATACTCATACTATT-CCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATT
* * * *
2052819 AGGATAAATGATATTGGTGCTTTGGTTTCGCAAGAAAGACTTTTTTCCCACCAATGTTTATAAAG
130 AGGATACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * * *
2052884 TCAAAATTCATGCCGCAAATGAGCCAAACGTAGATTCTAGTTTTGATCTTCATTCAATTTGTAAT
195 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCACTCATTTTGTGAT
* * *
2052949 TAGGCACTGTAAAAACATTCTCCTGTTTAAGATTAATGATATTGATGATTTTTTTTTCCGTGGAA
260 TAGGCACTATAAAAACATTCTCCTG-TTAAGATTAATGATATTGATGATTTTTTTTTGCGTTGAA
* * *
2053014 ATATTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCAATT
324 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *
2053079 CTCACAACAATCTCCATTCTTTTCAAGATTGAGATCCAAAAACACATTCTGTTCATTAGGATACA
389 CTCATAACAATCTCCATTCTTTTCAAGATTG-GATCCAAAAACACATTCTATTCATTAGGATACA
2053144 TGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTATTTCGTCGTTTTTTATAGAATCAAAGT
453 TGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTT-TTTCGTCGTTTTTTATAGAATCAAAGT
* ** *
2053209 TGGTCTCTTAAATCTGACAAACATGAATACTCGTACTATTCCCCATTCTTTTCAGGATTAGGCAC
517 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCAC
* *
2053274 TTTAAACATAGTCTTCCCATTAGGATACACGATATTGGTGCTTTGGTTTCTCAAGAAAGGCTCTT
582 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTCAAGAAAGGCTTTT
*
2053339 TTCCTACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACATGAATTTTTAGTTT
647 TTCC-ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACATGGA-TTTTAGTTT
* * *
2053404 TGATGTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATATT
710 CGATCTTCAATCATTTTGTGATTAGGCAC-ATAAAAACATTCTCCTCATTAAGATTAATGATATT
* * * * *
2053469 GATGATTTTCTTCTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTTATCCT
774 GATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCT
* * *
2053534 TAAATAAGACAACCATCGATTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAATA
839 TAAATAAGACAAGCATCGATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
** *
2053599 CATTCTGTTCATTAGGATACATGA-TAGTGATGCTTTGGTTC
904 CATTCCCTTCATTAGGATACATGACT-TTGATGCTTTGGTTC
* * * * * * *
2053640 GCAAGAAAAGCTATT-TTT-CGCCGTTTTTTATAGAATCATAGCTGGTCTCTTAAATCAGACAAA
1 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATCAGACAAA
* *
2053703 CATGAATACTCATACTATTTCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTATTCTTATT
66 CATGAATACTCATACTA-TTCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATT
* *
2053768 AGGATACATGATATGGGTGCTTTGGTTTCGCAAGAAAGGCTCTTTTCCCACCAATTTTTGTAAAG
130 AGGATACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* * * *
2053833 TCAAAATTCATACCTAAAATGAGCCAAACGTGGATTCTAGTTTTGATTTTCACTGATTTTGTGAT
195 TCAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCACTCATTTTGTGAT
* * * * *
2053898 TAGGCACTATAAAAACATTCTCCTCATTAAGATTAATGATGTTGATGATTTTCTTTTGCATTAAA
260 TAGGCACTATAAAAACATTCTCCT-GTTAAGATTAATGATATTGATGATTTTTTTTTGCGTTGAA
* * * *
2053963 ATCTTTTTTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCCTAAATAAGACAAGTATCGATT
324 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* ** *
2054028 CTAATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCGTTAGGATACA
389 CTCATAACAATCTCCATTCTTTTCAAGATT-GGATCCAAAAACACATTCTATTCATTAGGATACA
* * * * **
2054093 TGGCATTGATGCTTTGGTGTCGCAAGACAAGCTTTTCTTTACACCGTTTTTTGATAGAATCAAAG
453 TGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCGTCGTTTTTT-ATAGAATCAAAG
* * * *
2054158 TTTGTCTCATAAATAAGACAAACATGAATTA-TTATACTATTCCCCATTCCTTTC-GACATTAGG
516 TTTGTCTCTTAAATAAGACAAACATGAA-TACTCATACTATTCCCCATTCTTTTCAG-GATTAGG
* *
2054221 CACTTTAAACATAGTCTTCTCACTATGATACACGATATTGGTGCTTTGGTTT-TGCAAGAAAGGC
579 CACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT-CAAGAAAGGC
** * * * *
2054285 TTTTTTCACAAGAAATTTTTGAAAAGTCAAAATTCGTGCCTCAAATGAGCTAAACATGGATTTCA
643 TTTTTTC-C-ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACATGGATTTTA
*
2054350 GTTTCGATCTTCAATCATTTTGTGATTAGGCACAATAAAAACATTCTTCTCATTAAGATTAATGA
706 GTTTCGATCTTCAATCATTTTGTGATTAGGCAC-ATAAAAACATTCTCCTCATTAAGATTAATGA
* * * *
2054415 TATTGATGATTTTCTTTTGGGTTGAAATATTTTCATTGCCCTATTTTCCTTAAAATCAAAGTTCG
770 TATTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
2054480 TCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTGTTTTCAAGATTGGGATCAAA
835 T-CCTTAAATAAGACAAGCATCGATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* *
2054545 AAACACATTCCCTTCATTAGGATACATGACTTTAATGCTTTGGTGC
899 AAACACATTCCCTTCATTAGGATACATGACTTTGATGCTTTGGTTC
* * * * * *
2054591 AGCAAGAAATGCTTTCCTTTCCACCGTTTCTGATAGAATCAAAGTTTTTCTCTCAAGTCTGACAA
1 -GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATCAGACAA
* *
2054656 ACATGAATACTCATACCAATCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAT
65 ACATGAATACTCATACTATTC-CCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAT
2054721 TAGGATACATGATATTGGTGCTTTGGT
129 TAGGATACATGATATTGGTGCTTTGGT
2054748 CTCTGATGAA
Statistics
Matches: 1806, Mismatches: 218, Indels: 59
0.87 0.10 0.03
Matches are distributed among these distances:
943 59 0.03
944 140 0.08
945 4 0.00
946 38 0.02
947 25 0.01
949 597 0.33
950 266 0.15
951 426 0.24
952 127 0.07
953 6 0.00
954 118 0.07
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (944 bp):
GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATCAGACAAA
CATGAATACTCATACTATTCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTA
GGATACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
CAAAATTCATGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCACTCATTTTGTGATT
AGGCACTATAAAAACATTCTCCTGTTAAGATTAATGATATTGATGATTTTTTTTTGCGTTGAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
CATAACAATCTCCATTCTTTTCAAGATTGGATCCAAAAACACATTCTATTCATTAGGATACATGA
CAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCGTCGTTTTTTATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGGATTAGGCACTTTA
AACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTCAAGAAAGGCTTTTTTCC
ACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCCAAACATGGATTTTAGTTTCGATCT
TCAATCATTTTGTGATTAGGCACATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGATT
TTCTTTTGCGTTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAA
GACAAGCATCGATTCTTGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCC
TTCATTAGGATACATGACTTTGATGCTTTGGTTC
Found at i:2056397 original size:12 final size:11
Alignment explanation
Indices: 2056375--2056450 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2056365 AGAGAAAGAA
*
2056375 GAGAGAGGAGG
1 GAGATAGGAGG
2056386 GATGATAGGAGG
1 GA-GATAGGAGG
*
2056398 AGAGACAGGA--
1 -GAGATAGGAGG
*
2056408 GAGATAGTA--
1 GAGATAGGAGG
2056417 GAGATAGGAGG
1 GAGATAGGAGG
2056428 GATGATAGGAGG
1 GA-GATAGGAGG
*
2056440 AGAGACAGGAG
1 -GAGATAGGAG
2056451 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2056407 original size:24 final size:24
Alignment explanation
Indices: 2056374--2056459 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2056364 AAGAGAAAGA
*
2056374 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2056398 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2056416 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2056440 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2056460 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2056426 original size:42 final size:42
Alignment explanation
Indices: 2056365--2056483 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2056355 TAGCCCTCAA
* *
2056365 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2056407 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2056449 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2056484 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2062411 original size:12 final size:11
Alignment explanation
Indices: 2062389--2062464 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2062379 AGAGAAAGAA
*
2062389 GAGAGAGGAGG
1 GAGATAGGAGG
2062400 GATGATAGGAGG
1 GA-GATAGGAGG
*
2062412 AGAGACAGGA--
1 -GAGATAGGAGG
*
2062422 GAGATAGTA--
1 GAGATAGGAGG
2062431 GAGATAGGAGG
1 GAGATAGGAGG
2062442 GATGATAGGAGG
1 GA-GATAGGAGG
*
2062454 AGAGACAGGAG
1 -GAGATAGGAG
2062465 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2062421 original size:24 final size:24
Alignment explanation
Indices: 2062388--2062473 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2062378 AAGAGAAAGA
*
2062388 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2062412 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2062430 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2062454 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2062474 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2062440 original size:42 final size:42
Alignment explanation
Indices: 2062379--2062497 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2062369 TAGCCCTCAA
* *
2062379 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2062421 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2062463 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2062498 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2068425 original size:12 final size:11
Alignment explanation
Indices: 2068403--2068478 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2068393 AGAGAAAGAA
*
2068403 GAGAGAGGAGG
1 GAGATAGGAGG
2068414 GATGATAGGAGG
1 GA-GATAGGAGG
*
2068426 AGAGACAGGA--
1 -GAGATAGGAGG
*
2068436 GAGATAGTA--
1 GAGATAGGAGG
2068445 GAGATAGGAGG
1 GAGATAGGAGG
2068456 GATGATAGGAGG
1 GA-GATAGGAGG
*
2068468 AGAGACAGGAG
1 -GAGATAGGAG
2068479 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2068435 original size:24 final size:24
Alignment explanation
Indices: 2068402--2068487 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2068392 AAGAGAAAGA
*
2068402 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2068426 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2068444 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2068468 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2068488 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2068454 original size:42 final size:42
Alignment explanation
Indices: 2068393--2068511 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2068383 TAGCCCTCAA
* *
2068393 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2068435 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2068477 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2068512 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2074887 original size:476 final size:475
Alignment explanation
Indices: 2073493--2100324 Score: 30313
Period size: 476 Copynumber: 56.8 Consensus size: 475
2073483 GTCATCAGTC
* *
2073493 TCGCAAGAAAGG-TTTTTATACCACCAATTTTTGTAAGGTCAAAATTCGTGCCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTT-TCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
2073557 AACGTGGAT-TCTAGTATTGATCTTCATTCACTTTGTGATTAGGCACTATAAAAATATTCTCCTC
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
** ** * *
2073621 ACTAAGATTAATGATATTGATGATTTTC-TTT-CGGTGAAAATCTTTTCTTTGCCTTATTTTTCT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCT
* * * * * *
2073684 TAAAATCAAAGTTCATCGCTTAAATATGACAGGCATCGATTCTCATAACAATTTCCATTCCTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* * * * * * *
2073749 AAGTTTCGGATCCAAAAACACAATCTATTCATTAGAATACATGACAGTGATGGTTTGTTGTTGCA
258 AAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCA
***
2073814 AGAAAAGCTTTTTTTCCATTATTTTTGATAGAATC-AAGTTTGTCTCTTAAATAAGACAAACATG
323 AGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * *
2073878 TATACTTATACTATTCCCCATTCTTTTTAAGATTAGGTACTTTAAACAAAGTCTTCTCACTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* * * *
2073943 TACACAATATTGGTTCGTTCATT
453 TACACGATATTGGTGCTTTCGTT
* **
2073966 TCGTAAGAAAGGCTTTTTTCCCATGAAATTTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCC
1 TCGCAAGAAAGGCTTTTTTCCCA-CCAA-TTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCC
2074031 AAACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC-CCT
64 AAACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCC-
2074094 TCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCC
127 TCTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCC
* * *
2074159 TTAAAATCAAAATTCATCCCTT--A-AAGACAAGCATCGATTCTTGTAACAATCTCCATTCTTTC
192 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTT
*** * *
2074221 CATTTTTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAGAGTGATGCTTTGGTGTCAC
257 CAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * * * * *
2074286 AAGAAAAGCTTTTTTTGCTCTGTTTTTGATAGAATCAAAGTTTATCTCCTAAACT-TGACAAACA
322 AAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGACAAACA
* *
2074350 TGAATACTTATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTTTTCTCACTAG
386 TGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * *
2074415 AATACATGATATTGGTGCTTTTGTT
451 GATACACGATATTGGTGCTTTCGTT
** ** * *
2074440 TTACAAGAAAGGCTTTTTTCCCAAGAAATTTTTGTAAGGTTAAAATTCGTGCCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
*
2074505 AACATGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
65 AACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * *
2074570 TTAAGACTAATGATATTGATGATTTTATTTTGCATTGAAATCTTTTCTTTGCCCAATTTTTCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
2074635 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATGTTCATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* *
2074700 GATTGGGATCCAAAAATACAATT-TATTCATTAGGATACATGACAGTGATGCTTTGGTGTCACAA
260 GATTGGGATCCAAAAACAC-ATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* * *
2074764 GAAAAGCTTTTTTTCCACCATTTTTGATAGAATCAAAGGTTGTCTCTTAATTAAGACAAACATGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * *
2074829 ATAGTCATACTATTCCCCATT-TTCTTCAAGATTTGGTACTTTAAACATAGTCTTCTCACTAGGA
389 ATACTCATACTATTCCCCATTCTT-TTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* *
2074893 TACACGATATTGGTGCTTTGGAT
453 TACACGATATTGGTGCTTTCGTT
* * * * * * *
2074916 TCGCAAGAAAGGCATTTTTCCCACTAATTTTTATAAAGTCTAAGTTCGCGCCTCAAATAAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* **
2074981 ACGTAGA-ATTTAGCATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCT-T
66 ACGTGGATA-TTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
*
2075044 ATTAAGATTAATGATATTGATGATTTTCCTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
130 -TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* * **
2075109 AAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
** * * * * * *
2075174 AGATTGGGATCCAAAAACACATTTTCCCTTCATTAGGATACCTGGCATTGATGCTTTGATATCGT
259 AGATTGGGATCCAAAAACACA--TTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
*
2075239 AAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
322 AAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * ** * * * * * * * *
2075304 TGAGTGCTTGTGCTATTCCCTATTCTTTTGAGGATTAGGCATTTTAAGCATTGTCTTCTCATTAG
386 TGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * *
2075369 GATACGCGATACTGGTGCTTTGGTTTT
451 GATACACGATATTGGTGCTTTCG--TT
* * * * * *
2075396 TCTCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAACTTCGCGCCTCAAATGAGTCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * * *
2075461 GCGT-GAT-TCTACTATTGATTTTCATTCATTTTGTGATT-----CTGTAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * *
2075519 TTAAGATTAATGATATTGGA-GATTTTCTTTCGCAGTGAAATCTTTTCTTTGTCCTATTTTCCCT
130 TTAAGATTAATGATATT-GATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* *
2075583 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTTA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * *
2075648 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATACATTCGTGTCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* *
2075713 GAAAAGCTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACATGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * *
2075778 ATACTTATACTATTCCACTTTCTTTTCCAGATTAGGCACTTTAAACATAGTCTTCTCACT-GTGA
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG-GA
* * *
2075842 TACGCGATATTGGTACTTTGGTT
453 TACACGATATTGGTGCTTTCGTT
* * * ** *
2075865 TCACATGGAAGGCTTTTTTCCCAAGAAATTTTTGTAAAGTCAAAATTCGTACCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * * * *
2075930 AATGTGGAT-TCTAGTTTTCATCTTCATTTATTTTGTGATTAGGCACAATAAAAACATTCT-CTT
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * ** *
2075993 TATTAAGATGAATGATATTGTTGATTTTCTTTTGTGTTGAAATCTTTTCTTTGCCCTATTTTTCT
129 T-TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCT
* * ** *
2076058 TAAAATCAAAGTACATCCCTTAAATAAGACAAGCATCGATTGTCGCGACAATCTCCATTATTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* * * ** * *
2076123 AA-AGTTGGAATCAAAAAACACATTCCATTCATTAGGATACATGACTTTGATACTTTGGTGCCGC
258 AAGA-TTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * * * *
2076187 AAGAAATGCTTTCCTTTT-CACCATTTCTGATAGAATCAAAGTTTATCTCTTAAATCAGACAAAC
322 AAGAAAAGCTTT--TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
2076251 ATGAATGCTCATACTATTCTCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTTTTCTAATTA
385 ATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* *
2076316 GGATACATGATATTGGTGCTTTGGTT
450 GGATACACGATATTGGTGCTTTCGTT
* *
2076342 TCGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCAAAATTCATGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
*
2076407 ACGTGGAT-TCCAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTAT--AAA-A------TC-
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * * *
2076461 -AAAGTTTAATGATATTGATGATTTTCTTTGGCA-TGAAAATCATTTCTTTGCCCTATTTTCGTT
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTT
* *
2076524 AAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCGTAACAATCTCCACTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * ** *
2076589 AGGTTGGGATCCAAAAGCACATTCTATTAATCGGGATACATGACTGTGATGCTTTGGTGTCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* ** * * * *
2076654 GAAAAGCTTTTTTTTCGTCGTTTTTGATAGAATCGAAGTTTATCTTTTAAATAGGACAAACATGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * * ** * *
2076719 ATAGTCATACTAATCTCTATTCTTTTCTAGATTAGGCACTATAAATGTAGTGTTC-CTA-TAAAG
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTC-ACT-AGG
* *
2076782 ATACAAGATATTGATGCTTTCGTT
452 ATACACGATATTGGTGCTTTCGTT
** * * * * * * *** *
2076806 TCATAAGAAAGGCTTTCTTCCTAACAATTTTTTTAAAGTCAAAGTTCGTGCCTCGAGCAAGCTAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2076871 ATGTGGATTTTAGTTTTGATCTTCATTCATTTTGTGATTTGGCACTACAAAAACATTCTCCTCAT
66 ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
* *
2076936 TAAGATTAA-G-----GAT-A------TTGGC---G--A--TTTTCTTTGCCCTATTTTTCTTAA
131 TAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* *
2076981 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTTCATTCTTTTCAAG
196 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * **
2077046 ATTAGGATCTAAAAATACATTCCCTTCATTAGGATAC----C--TGA--CTTT-G-GT-------
261 ATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGA
* *
2077094 ---GCTTTTCTTTCCACCGTTTTTGCTAGAATAAAAGTTTGTCTCTTAAATCAA-ACAAACATGA
326 AAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGA
* * * * *
2077155 AAAGC-CGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATGGTCTTCTCATTAGGG
389 ATA-CTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
*
2077219 TACACGATATTGGTGCTTTGGTT
453 TACACGATATTGGTGCTTTCGTT
* * * * *
2077242 TCGCAAGAAAGGTTTTTTTCCCACCAATTTTCGTAAGGTCAAAATTCGTGGCTCAAATGAGCCAG
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * *
2077307 ACGTGGATACTAGTTTTGAT-TGTCATTCATTTCGTGATTAGGCACTATAAAAACATTCTCTTCT
66 ACGTGGATATTAGTTTTGATCT-TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* *
2077371 TTAAGATTAACGATATTAATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTT
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTT
*
2077435 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCCTTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * *
2077500 TGATTGGGATCCAAAACCACATTCTATTCATTAGGATACATGACAATGATGCTTT-GTATCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* *
2077564 GAAAAGCTTTTTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * *
2077629 ATACTTATACCATTCCCCACTCTTTTCAAGAATAGGCACTTTAAACAAAGTCTTCTCACTAGGAT
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGAT
*
2077694 ACATGATATTGGT-CTTTCGTT
454 ACACGATATTGGTGCTTTCGTT
* * * ** **
2077715 TCGTAAAAAATGCTTTTTTCCCAAGAAATTTTT-TATGGTCAAAATT-GATGCCTCAAATGAGCC
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCG-TGCCTCAAATGAGCC
* * * * *
2077778 AAACATGGATACTAGTTTTGATCTCCATTCATTTTGTGATTAGGAACTATAAAAACATTCTTCTC
64 AAACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * * * **
2077843 TTCAAGATTACTAATATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTTTTTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* * *
2077908 AAAATCAAAGTTCATCCCTTAAATAAGACTAGCACCGATTCTCGTAACAATCTCCATTCTTGTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * ** **
2077973 TGATTGGGATCCAAAAATACATTCTATTCATTAGGATACATGACAGTGATATTTTGGCATCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* * * * *
2078038 GAAAAGCTTTTTTTTCACCATTTTTGATAAAATCGAAGTTTGTCTCTTAAATTAGACAAACATGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * *
2078103 ATGCT-ATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACCAGGAT
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGAT
*
2078167 ACACGATATTGGTGCTTTTGTT
454 ACACGATATTGGTGCTTTCGTT
* ** * ** * *
2078189 TTGCAAGAAAGGCTTTTTTCCCATGAAATTTTGTATGGTCAAAATTCGTGCTTCAAAAGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * ** *
2078254 ACGTGGATACTAGTTTTCATCTTCATTCATTTTGTGATTAGGCTTTATAAAAACATTCTTCTCTT
66 ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
* *
2078319 TAAGATTAATGATATTGATGATTTTCTTTTGTACTGAAATCTTTTCTTTGCCCTATTTTCCTTAA
131 TAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAA
** * *
2078384 AATCAAAGTTCATCATTTAAATAAGACAAG-ATCGATTCTCATAACAATCTCCATTATTTTCAAG
196 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * *
2078448 ATTGAGATCCAAAAACACATTTTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAATA
261 ATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGA
* *
2078513 AAAGCTTTTTTTCCACCACTTTTT-ATAGAATCAAAGTTTGTCTCTTAAATAAGACGAACATGAA
326 AAAGCTTTTTTTCCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *** * ** ** *
2078577 TAATCAAACTAATCTCCATT-TTTTTGGGGTTAGGCACCATAAATGTAGTCTTCT--TTAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
* * **
2078639 ACACAATGTTAATGCTTTCGTT
454 ACACGATATTGGTGCTTTCGTT
* ** * *
2078661 ACGCAAGACGGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATAAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * ** *
2078726 ACGAGCA-ATCTAGTTTTGATCTTCATTCACATTGTGATTAGGCACTATAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * *
2078790 TTAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCTATCTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2078855 AAATCAAAGTTCTTCCCTCAAATAAGACAAGCATCGATTCTCGAAACAATCTCTATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* ** ** * *
2078920 GATTGGGATCCAAAAACGCATTCCCTTCATTAGGATACATGACTTTGGTTCTTTGGTGTCGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * *
2078985 AAATGCTTTTCTTTCCACCGTTTTTGCTAGAATCAGAA-TTTGTCTCTTAAATCAGACAAACATG
325 AAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAACATG
* * * * *
2079049 AAAACTCATACTATTCCCCCTTTTTTTCAAGATTAGGCACTTTAAACATAGTTTTCTCATTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* * *
2079114 TACACGATATTGGCGTTTTGGTT
453 TACACGATATTGGTGCTTTCGTT
* * * * * * * *
2079137 TCGCAAGAAAGGTTTTTTTCCCATCAATTTTCGTAAGGTCAAAATTTGTGGCTCGAATGAGCCAG
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2079202 ATGTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAATATTCTCTTGTT
66 ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
* * *
2079267 TCAGATTAACGATAATGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTA
131 TAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2079331 AAATCGAAGTTCATCCCTTAAATAAGACTAGCATTGATTCTCGTAACAATCTCCTTTCTTTTCAT
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * *
2079396 GATTGGGATCCAAAAACACTTTCTATTCATTAGGATACATGACAGTAATGCTTTGGTATCGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
2079461 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * *
2079526 TACTTATACTATTCCCTATTCTTTTCAAGATTAGGTACTTTAAACATAATCTTCTCACTAGGATA
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGATA
* *
2079591 CACAATATTGGTGCTTTTGTT
455 CACGATATTGGTGCTTTCGTT
* * ** ** *
2079612 TAGCAAGAAATGCTTTTTTCCCAAGAAATTTTTGTATGGTCAAAATTCATGCCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * * *
2079677 AATGTGGATACTAGCTTTGATCTTCATTCATTTTATGATTAGGCACTATAAAAACATTCTCCTCT
65 AACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * *
2079742 TCAAGATTACTGATATTGATGA-TTTCTTTTCCATTGAAATCTTTTCTTTGCCCTATTTTCTTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
2079806 AAATCAAAGTTCATCCCTAAAATAAGACAAGCA-CGGATCCTCGTAACAATCTCCATTCTTTTCA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATC-GATTCTCGTAACAATCTCCATTCTTTTCA
* * * * *
2079870 AGATTAGGATCCAAAATCACATTTTCTTCATTAGGATACATGACAGTGATGCTTTGGTGTCGTAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* *
2079935 GAAAAGCTTTTTTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACG
324 GAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * * ** ** *
2080000 AATAGTCATACTAATCTCCATTTTTTTCGAGATTAGGCACCATAAAGGTAGTCTTCT--GTAAGG
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGG
**
2080063 ATACACGATATTAATGCTTTCGTT
452 ATACACGATATTGGTGCTTTCGTT
* * * *
2080087 TCGCAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCAAAATTCTTGCCTCAAATAAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2080152 ACGTGGA-ATCTAGTTTTGATCTTCATTCACTTTGTGATTAAGCACTGTAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * *
2080216 TTGAGATTAATGGTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
**
2080281 AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTAATTTGCATTAATTCTCGTAACAATCTCCA
195 AAATCAAAGTTCATCCCTTAAATAA-G--A-C---AA---GCATCGATTCTCGTAACAATCTCCA
* * * *
2080346 TTGTTTTCAAGATTGGGATCCAAAAAAACATTTTATTCATTAGGATACATGACTTTGGTGCTTTG
250 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGAC-----AG---TG
* * * * *
2080411 GTGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTTT
307 ATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * * * *
2080476 TAAATCATACAAACATGAAAACTCGTACTATTCCCTATTCTTTTCAAGATTAGGCACTTT--ACG
371 TAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACA
* * *
2080539 TAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTT
436 TAGTCTTCTCACTAGGATACACGATATTGGTGCTTTCGTT
* * ** * * *
2080579 TCGCAAGAAAGGTTTTTTTCCCACCAATTTTCGTATGGTCAAAATTCGTGGCTCAAATAAGCCAG
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * ** * *
2080644 ACGTGGACACTAGTTTTGATCTTCATTCATTTTGTGATTATGCACTGCAAAAACATTCTCTTTTT
66 ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
* * * *
2080709 TAAGATTAACGATATTGACGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCTTATATTCCTTA
131 TAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTA
* *
2080773 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCCTTCTTTTCAT
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
2080838 GATTAGGATCCAAAAACACTTTCTATTCATTAGGATACATGACAGTGATGCTTTGGTTTCACAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* *
2080903 AAAAGCTTTTTTTTCCACCGTTTTTTGATAGAATCAAACTTTGTCCCTTAAATAAGACAAACATG
325 AAAAGC-TTTTTTTCCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
2080968 AATACTTATACTATACCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* *
2081033 TACACAATATTGGTGCTTTTGTT
453 TACACGATATTGGTGCTTTCGTT
* * ** * ** * * *
2081056 TTGCAAGAAATGCTTTTTTCCCAAGAAATTTTGGTATGGTCAAAGTTCATGCCTCAAATGGGCCA
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
2081121 AACATGGATACTAGTTTTGATCTTAATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
65 AACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* *
2081186 TTAAGATTAATGATATTGATGATTTTCTTTTACATTGAAATCTTTTCTTTGCCCCATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
** * *
2081251 AAATCAAAGTTCATCATTTAAATAAAACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * *
2081316 GATTTGGATCCAAAAACACATTTTATTCTTTAGGATACATGACAGTGATGCTTTGGTGTCGTAAA
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * *
2081381 AAAAGCTTTTTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGAGAAACATG-A
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * * * *
2081445 TTCGTCTTA-TGATTCCCTATTCTTTTTAGGATTAGGCACTTTAAACATAGCCTTCTC-GTAAGG
390 TAC-TCATACT-ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGG
* *
2081508 ATACACGATATTGATGGTTTCGTT
452 ATACACGATATTGGTGCTTTCGTT
* * * * *
2081532 TCGCAAGAAGGGCTTTCTTCCCTCCAATTTTTGTAAAGTCAAAGTTTGTGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* *
2081597 ACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAAGCACAATAAAAACATTCTCCT-T
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * *
2081660 GTTAAGATTAATGATATTGAT--TTTTTTTTTGCGTTCAAATCTTTTCTTT-CTCCTATTTTCCT
130 -TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGC-CCTATTTTCCT
* *
2081722 TAAAATCAAAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGCAACAATCTCCATTCTTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* **
2081787 ATGATTGGGATCCAAAAACACATTCCT-TTCATTAGGATACATGACTTTGATGCTTTGGTGTCGC
258 AAGATTGGGATCCAAAAACACATT-CTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* ** * *
2081851 AAGAAATGCTTTTCTTTCCACTATTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACA
322 AAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
2081916 AGAATGCTTATACTATTCCCTC-TTCTTTTCAAGATTAGGCACTTTAAACAAAGTCTTCTCACTA
386 TGAATACTCATACTATTCCC-CATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
*
2081980 GGATACACGATATTGGTGCTTTTGTT
450 GGATACACGATATTGGTGCTTTCGTT
** * **
2082006 TCGCAAGAAAGGCTTTTTTCCCAAGAAATTTTTGTAAGGTCAAAATTCGTGCCTCAAAAAAGCCA
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
2082071 AACTTGGATACTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTCT
65 AACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * *
2082136 TTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGTCCTGTTTTCCTT
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTT
* *
2082200 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAATCTCCATTGTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * * * *
2082265 AGATTTGGATCCAAAAACACATTTTATTCATTAGGATATATCACAATGATGCTTTGGTGTCGTAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
*
2082330 GAAAAGCTTTTTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * * * *
2082394 ATTCGTCTTACGATTCCCTATTTTTTTCAGGATTAGCCACTTTAAACATAGCCTTCTCA-TAAGG
389 ATAC-TCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGG
* *
2082458 ATACACGATATTGATGGTTTCGTT
452 ATACACGATATTGGTGCTTTCGTT
* * * *
2082482 TCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTC-AAAGTCTGTGCCCCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTC-GTGCCTCAAATGAGCCA
* *
2082546 AACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAAGCACAATAAAAAACATTCTCCT
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTAT-AAAAACATTCTCCT
* * * * ** *
2082610 CGTTAAGATTAACGATATTGAT-TTTTTTTTTTGTGTTGAAATCTTGTCTTT-CTCCTATTTTCC
128 CTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGC-CCTATTTTCC
*
2082673 ATAAAATCAAAGTTCATCCCTTAAATAAG---A-CA---A-----G-----A-----ATTCTTTT
192 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTT
** **
2082716 CAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACTTTGATGCTTTGGTGTCGC
257 CAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * * * * * *
2082781 AGGAAATGTTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCACTTAAATCAGACAGACA
322 AAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
2082846 TGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTTG
386 TGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* *
2082911 GATACACGACATTGGTGCTTTAGTT
451 GATACACGATATTGGTGCTTTCGTT
* * *
2082936 TCGCAAGAAAGG-TTTTTTCCCACCAGTTTTCT-TAAGGTCAAAATTCGTGCCTCAAATGAGCTA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * * * * **
2082999 GACATGGATACTAGTTTTGATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTGTTCT
65 AACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * *
2083064 TTAAGATTAACGATATTGATGATTTTCTTTTGCA-TGAAAT-TTTTTTTTGGCCCTGTTTTCCTT
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTT-GCCCTATTTTCCTT
* *
2083127 AAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAATCTCCATTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
** * * *
2083192 TCATTGGGATCCAAAAGCACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTATAGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* *
2083257 GAAAAGCCTTTTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAGA-AAGACAAACATG
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATAAGACAAACATG
* *
2083321 AATACTTATACTATTCCCCATTTTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* *
2083386 TATAC-AGTATTTGTGCTTTCGTT
453 TACACGA-TATTGGTGCTTTCGTT
* * ** * *** * * *
2083409 TTGCAAGAAATGCTTTTTTCCCAAGAAATTTTGGTGTGGTCAAAGTTCATGCCTCAAATGGGCCA
1 TCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * * *
2083474 AACGTGGATACTAGTTTTGATCTACATTCATTTTGTGATTAGGAACTATAAAAACATTCTCCTGT
65 AACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * * ** *
2083539 TTATGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCTTTACGATATTTTCTTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2083604 AAATCAAAGATCATCCCTTAAATAAGACAAGCATCGATTTTCGTAACAAACTCCATTGTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
2083669 GATTGGGATCCGAAAACACATTCTATTCATTAGGATA-ATTGATAGTGATACTTTGGTGTCACAA
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACA-TGACAGTGATGCTTTGGTGTCGCAA
**** * * * * * * *
2083733 GAAAAGCTTTTTTTTTTGTCATTTTTTACAGAACCAAAGTTTGTTTTTTAAAAAAGACAAACATG
324 GAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
** * *
2083798 AATACTTTTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGCCTTCTC-GTAAGG
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGG
* * *
2083862 ATACACGATACTGATGGTTTCGTT
452 ATACACGATATTGGTGCTTTCGTT
* * * * * *
2083886 TCGCAAGAAGGGCTTTCTTCCCACTAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2083951 AAGTGGAT-TATAGTTTTGATCTTCATTCATTTTTGTGATTAAGCA-TAATAAAAACATTCTTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCA-TTTTGTGATTAGGCACT-ATAAAAACATTCTCCT
* * ** * *
2084014 CGTTAAGATTAATGATATTGATTATTTT-TTTTGTGTTGAAATCTTTTCTTTACCCCATTTTCCT
128 CTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCT
* * * ** *
2084078 CAAAATCAAAGTTCATCCCTTAAATAAGATAAGCATTGATTCTCACAACTATCTCCATTCTTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* * * ** * * *
2084143 AAGATTGGGATCCAAAAACATACTTC-CTTCATCAGGATACATGACTTTGAAGTTTTGGTGTCAC
258 AAGATTGGGATCCAAAAACACA-TTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * ** * *
2084207 AAGAAATGGTTTTCTTTCTGCCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATCAGACAAACA
322 AAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* ** * * *
2084272 AGAATACTTGTCCTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAATCTTCTCATTAG
386 TGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
*
2084337 GATACACGATATTGGTGCTTTGGGTT
451 GATACACGATATTGGTGCTTT-CGTT
** * * * * *
2084363 T-GCAAGAAAGG-GGTTTTCCCACCAATTTTTATAAAGTTAAAATTCATGCCACAAATAAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * *
2084426 ACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAATATTCTTCTCT
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* *
2084490 TTAAGATTAAGGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCATTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * * ** *
2084555 AAATCAAAGTTCATCTCTCAAATATGGCAAGCATCGAATCTCGTAACAGCCTCTATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * *
2084620 GATTAGGATCCAAAAACACACTCTATTCATTAGGATACACGAGAGAGATGCTTTGGTGTCACAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * *
2084685 AAAAGCTATTTTTT-CATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAGCATGA
325 AAAAGCT-TTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
** * * * * ** ** * * *
2084749 ATTGTCATGCTAATCTCTATT-TTTTCGGGATTAGGCACCATAAATATAGTCTTCT--GTAAAGA
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGA
** *
2084811 TACACGATATTAATGCTTTTGTT
453 TACACGATATTGGTGCTTTCGTT
* * * *
2084834 TCGCAAGAAAGGCTTTCTTCCCTCCAA----TG---AG-CCAAA--CAT---T--AAT-------
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * *** *
2084877 ---T-G----TAGTTTTAACCTTCATTCATTTTGTGATTAGGCATAGTAAAAACATTCTCCTCAT
66 ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
* * *
2084934 TAAGATTAATGATATTGATGAATTTCTTTTGCATTGAAATCTTTTTTTTTCCCTATTTTCCTTAA
131 TAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * ** **
2084999 AATCAAAGTTCATTCTTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTCTTTTTGAG
196 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * *
2085064 ATTTGGATCCAAAAACACATTATGTTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGA
261 ATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGA
* * * ** * * *
2085129 AAAGCTTTTTTTTTTCGCCGTTTTTGATAGAATCAAAGTTGGTCTCTTAAATCGGACGAACTTAA
326 AAAGC--TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* ** *
2085194 ATACTCGTACTATTCCCCATTCTTTTCAAGATTAGATACTTT--A-A-A------TCACTAAGAT
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGAT
** * *
2085249 ATGCGATATTGGTGCTTTGGAT
454 ACACGATATTGGTGCTTTCGTT
* * *
2085271 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * * **
2085336 ACGTGGAT-CTAGTATTGATCTTCATTCATTTCGTGATTAGGCACTATAAAAACGTTATCCTCAA
66 ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
* * * *
2085400 TAAGATTAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTCATCGCCCTATTTTCCTTAA
131 TAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* *
2085465 AATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTGAAG
196 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * * * * * *
2085530 TTTAGGATACAAAAACGCAATCTATTCTTTAGGATACATGAGAGAGATGCTTTGGTGTCACAAGA
261 ATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGA
* * * *
2085595 AAAGCTTTTTTTCCATCATTTTGGATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAAT
326 AAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * ** * ** ** *
2085660 AGTCATACTAATCTCCATTCTTTTCGGGATTACGCACCATAAATGTAGTCTTCT--GTAAGGATA
391 ACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGATA
* *
2085723 CACGATATTGATGCTTTCATT
455 CACGATATTGGTGCTTTCGTT
* ** ** *
2085744 TCGCAAGAAAGGCTTTCTTCCCTTCAATTTTTGTAAAGTCAAAGGTCGT-CTCTTAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGC-CTCAAATGAGCCA
* * * * *
2085808 AACATGAAT-TCTAGTTTTGACCTTCTTTCATTTTGTGATTAGGCACAATAAAAACATTCTCCT-
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * * * *
2085871 TATTAAGATTAATGATATTGATGAATTTCTTTTACGTTGAAATCTTTTTTTTTGTCCTATTTTCC
129 T-TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATC-TTTTCTTTGCCCTATTTTCC
* * **
2085936 TTAAAATCAAAGTTCTTTCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTCTTTT
192 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTT
* * * *
2086001 CAAGATTAGGATCCAAAAGCACATTCTATTCGTTAGGATGCATGACAGTGATGCTTTGGTGTCGC
257 CAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * * * * *
2086066 AAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTGGTCTCTAAAATCAGACGAACTT
322 AAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
2086131 GAATACTCATACTATT-CCCATTCTTTCCAAGATTAGGCACTTTAAAAATAGTCTTCTCACTAGG
387 GAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * *
2086195 ATACATGATATTGGTGCTTTGGAT
452 ATACACGATATTGGTGCTTTCGTT
* * * * * *
2086219 TCGTAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCGA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2086284 ATGTGGAT-TCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTATCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
*
2086348 TTAAGATTAATGATACTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2086413 AAATCAATGTTTATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTTAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* *
2086478 GATTAGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTTGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * *
2086543 AAAAG-TTTTTTTCCACCATTTTTGATAGAATTAAAGTTTGTCCCTTAAATAAGATAAACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * * * ** ** *
2086607 TAGTCATACTAATCTCCATTTTTTTCAGGGTTAGGCACCATAAATGTAGTTTTCT-A-TAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
* *
2086670 ACACGATATTGATGCTTTCGGT
454 ACACGATATTGGTGCTTTCGTT
** * * * * * * *
2086692 TCGCAAGAGCGGCTTTCTTCCCTCCAATTTTTATAAAGTC-AAA---GGGTCTTAAATAAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2086753 ACATGAAT-TCTAGTTTTG-TCCTTTATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCCC
66 ACGTGGATAT-TAGTTTTGAT-CTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * *
2086816 ATTAAGATTAATGATATTGATGAATTTCTTTTGCATTGAAATCTTTTTTTTGCCCTATTTTCCTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* * *
2086881 AAAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCATAACAATCTCCATTCCTTTT-
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTC
* * * * *
2086945 AAGATTAGGATCCAAAAACACATTCTGTTC-TCTGGGATACACGACAGTGATGCTTTGGTGTCAC
258 AAGATTGGGATCCAAAAACACATTCTATTCAT-TAGGATACATGACAGTGATGCTTTGGTGTCGC
* * * ** **
2087009 AAGAAAAGCTTTTTTTTTCGCCGTTTTTGATAAAATCAAAG-TTGATCTCTTAAATCGGATGAAC
322 AAGAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAAC
* ** * * *
2087073 ATGAATACTCGTACTATTCCTAATTCTTTTCAAGATTAGGCACTTCAAACATAGTGTACTCACTA
385 ATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
2087138 GGATACACGATATTGGTGCTTT-GAATT
450 GGATACACGATATTGGTGCTTTCG--TT
* * * *
2087165 T-GCAAGAAAGGCTTTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAC
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2087228 ACGTGGAT-TCTAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATATAAACATTATCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
*
2087292 ATAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2087357 CAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCCA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* *
2087422 GATTGGGATCCAAAAACACATTCTACTCATTAGGATACATGACAGTGAAGCTTTGGTGTCGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * * *
2087487 GAAAG-GTTTTTTCCACCATTTTTGATAGAATCAGAGTTTGTCCCTTAAATAAGACAAACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *** * ** ** **
2087551 TAGTCATACTAATCTCCATTTTTTTTGGGGTTAGGCACCATAAATGTAGTCTT-T-TGTAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
*
2087614 ACACGATATTGATGCTTTCGTT
454 ACACGATATTGGTGCTTTCGTT
* * * * ** * * * *
2087636 TCGCAAGAAATGCTTTCTTCCCTCCCATTTTTGTAAAGTCAATTTTTGAGTCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
** * * * *
2087701 ACACGAAT-TCTAGTTTTG-TCCTTCATTCATTTTGTGAGTA--CACATAATAAAATCATTTTCC
66 ACGTGGATAT-TAGTTTTGAT-CTTCATTCATTTTGTGATTAGGCAC-T-ATAAAAACATTCTCC
* * * * * *
2087762 TCATTAAGATTAATGATACTGATGAATTTT-TTTTACATTCAAATCTTTTTTTTGCCCTATTTTT
127 TCTTTAAGATTAATGATATTGATG-ATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTC
* ** * *
2087826 CTTTAAATCAAAGTTCATTACTTAAATAAGACAAGCATCGATTCTCATAACAATCTCTATTCTTT
191 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTT
* * * * * * *
2087891 TTAAGATTAGGATCCAAAAACACATTCTGTTCACTGGGATACACGACAGTGATGCTTTGGTGTCA
256 TCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCG
* ** * * ** *
2087956 CAAGAAAAGCTTTTTTTTCGTCGTTTTTGATAAAATCAAAGTTGGTCTCTTAAATCGGACGAACA
321 CAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* *
2088021 TGAATACTCGTACTATTCCCAATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
386 TGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * *
2088086 GATACATGATATTGGTGCTTTGGAT
451 GATACACGATATTGGTGCTTTCGTT
** * * ** *
2088111 TCGCAAGAAAGGGATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCACCTCAAATGAGCCAC
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * *
2088176 ACGTGGAT-TCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTATCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
*
2088240 ATAAGATTAATGATATTGATGA-----TTTT-CATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2088299 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCGCCATTCTTCTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* *
2088364 GATTGGGATCCAAAAACACATTCTACTCATTAGGATACGTGACAGTGATGCTTTGGTGTCGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * * *
2088429 GAAAGTTTTTTTTCCACCGTTTTTGGTAGAATCAGAGTTTGTCCCTTAAATAAGACAAACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * ** * ** ** *
2088494 TAGTCATAATAATCTCTTTTTTTTTCAAGATTAGGCACCATAAATGTAGTCTTC-C-GTAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
* * * * *
2088557 ATACAATATTGTTACCTTCGTT
454 ACACGATATTGGTGCTTTCGTT
* * * * * * *
2088579 TCGCAAGAAAGGCTTTCTTCCCTCCAA-TTTTGTAAAGTCAAATTTTGAGTCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * * *
2088643 ACATGAAT-TCTAGTATTAATCTTCATTCATTTGGTGATTAGGCACTATAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
** * * *
2088707 ACAAGATTAATGATATTGACGATTTT-TTTTGCATTGAAATCTATTCTTTGCCCTATTTTCTTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2088771 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTATCGCAAAAATCTCCAATCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
2088836 GATTGGGATCCAAAAACACATTCCT-TTCATTAGGGTACATGGCATTGATGCTTCGGTGTCGCAA
260 GATTGGGATCCAAAAACACATT-CTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* * * * *
2088900 GAAATGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTCGTCGCTTAAATAAGACAAACATG
324 GAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * *
2088965 AATACTCGTACTATTCCCCATTCTTTTCACGATTAGGCATTTTAAACATAGTCTTCTCATTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
*
2089030 TACACGATATTGGTGCTTTGGTT
453 TACACGATATTGGTGCTTTCGTT
* * * * *
2089053 TCGCAAGAAAGGCATTTTTCCCACCAATTTCTCTAAAGTCAAAATTCGTGCCCCAAATAAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
*
2089118 ACGTGGAT-TCTAGTTTTGATCTTCATTC-TTTTAGTGATTAGGCACTACAAAAACATT-TCCCT
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACATTCT-CCT
* * * * * *
2089180 CATTAATATTAATGATATTGACGATTTTCTTTTGCA-TGAAAATCTTTTTTTTGTCCTATTTTTC
128 CTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCC
* * *
2089244 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAATCTCCATTGTTTT
192 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTT
* * *
2089309 CAATATTGGGATCCAAAAACACATTTTATTCATTAGGATACATGATAGTGATGCTTTGGTGTCGC
257 CAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGC
* * *
2089374 AAGAAACGCTTTTTTTTCTACCGTTTTTGA-AGAAATCAAAGTTTGTCTCCTAAATAAGACAAAC
322 AAGAAAAGC-TTTTTTTCCACCGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * ** ** ** *
2089438 ATGAATAGTCATACTAATTTTCTCA--CTTTTCGGGATTAGGCACAATAAATGTAGTCTTCTC-G
385 ATGAATACTCATACT-A-TTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCAC
* * *
2089500 TAAGGATACATGGTATTGATGCTTTCGTT
448 T-AGGATACACGATATTGGTGCTTTCGTT
* * * *
2089529 TCGCAAGAAAGGCTTTTTTCTCGCCAATTTTTTTAAAGTCAAAGCTT-GTGCCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAA-ATTCGTGCCTCAAATGAGCCA
*
2089593 AACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTACTC
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
** * * *
2089657 AATAAGATTAAAGATATAGATGATTTTCTTTCGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCT
* * *
2089721 TAAAATCAAAGATCATCCCTTAAATAAGACAAGCATCGATTTTCGTAACAATCTCCATTGTTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* * * * * *
2089786 AAGATTGGGATCC--AAACATATTCTATTTAGTAGGATACTTGACAGTGATACTTTCGTGTCGCA
258 AAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCA
*** * * * *
2089849 AGAAAAGCTTTTTTTCTGTCATTTTTTATAGAATCAAAGTTTTTCTTTTAAATAAGACAAACATG
323 AGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * *
2089914 AATACTCTTACTATTCCCCATTCTTTTTAGGATTAGGCACTTTAAACATAGCCTTCTC-GTAAGG
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGG
* ** * *
2089978 ATACATGATATTGACGGTTTTGTT
452 ATACACGATATTGGTGCTTTCGTT
* * * *
2090002 TCGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTTAAAGTTCATGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * *
2090067 ACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAAGCACAATAAAAACATTCTCCTCG
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
** * * * * *
2090131 TTAAGATTAATGATATTGATTTTTTTTTTTTGCGTTGAAATCTTTTCTTTACCTTATTTTCCATA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2090196 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGCAACAATCCCCATTCTTTTTAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * ** *
2090261 GATTGGGATCCAACAACATATTAC-CTTCATTAGGATACATGACTTTGAAGCTTTGGTGTCGCAA
260 GATTGGGATCCAAAAACACATT-CTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
** * * * * *
2090325 -AAAATGCTTTTCTTTCTGCCATTTTTTATTGAATCAAAGTTTGTCTCTT-TATTAGACAAACAT
324 GAAAA-GCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
** * *
2090388 GAATACTTGTACTATTCCCCATT-TGTTTCAAGATTAGGCACTTTAAACATAATCTTCTCATTAG
387 GAATACTCATACTATTCCCCATTCT-TTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAG
* * * *
2090452 GATACATGACAATGGTGCTTTAGTT
451 GATACACGATATTGGTGCTTTCGTT
* ** * * *
2090477 TCGTAAGAAAGG-GGTTTTCCCACCAATTTTTATAAAGTCAAAATTCATGCCACAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* *
2090541 ACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAGCCA-TAACAAAAACATTCTCCTC
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACT-ATAAAAACATTCTCCTC
* *
2090604 TTTAAGATTAAGGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCATTGCCCTATTTTCCTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * ** * *
2090669 AAAATCAAAGTTCATCTCTTAAATAAAACAAGCATTGATTCTCGTAACAGCCTCTATTTTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * * * *
2090734 AGATTGGGATCCAAAAACACATTTTATTCATTAGGATACATGAGAGAGAAGCTTTGGGGTCACAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
** *
2090799 GAAAAGCTTTTTTTCCGTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * *** ** ***
2090864 ATAGTCATGCTAATCTCCATTTTTTTGGGGATTAGGCACCATAAATGCAGTCTTCT-A-TAAGGA
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGA
* *
2090927 TACATGATATTGATGCTTTCGTT
453 TACACGATATTGGTGCTTTCGTT
* * * ** * *
2090950 TTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCAAAGGTCGTGTCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2091015 ACATGAAT-TCTAGTTTTGA-CGTTCTTTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTC
66 ACGTGGATAT-TAGTTTTGATC-TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * * ** * *
2091078 ATTAAGATTAAAGATATTGATGAATTTCTTTTGCGCTGAAATCTTTTTTTTGCCCTATTTTTCTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* * ** *
2091143 AAAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCAAAACAATCTCCATTCTTTTCG
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
** * * * * *
2091208 AGATTATGATCCAAAACCACATTCTGTTCATTAGGATAGATGACAGTGATGCTTTGATGCCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* * ** ** *
2091273 GAAAAGCTTTTTTT-CGCCGTTTTTGATAGAATCAAAGTTGGTCTCTTAAATCGGATGAACTTGA
324 GAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * *
2091337 ATACTCGTACTATTCCCCATTCTTTTCAAGATT-GAGCACTTTAAACATAGTCTTCTCACTAAGC
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAG-GCACTTTAAACATAGTCTTCTCACTAGGA
* * **
2091401 TACACAATATTGGTGCTTTGGAC
453 TACACGATATTGGTGCTTTCGTT
* * * **
2091424 TCGCAAGAAAGGCTTCTTTCCCACCAATTTTTGTAAAGTCTAAGTTCACGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2091489 ACGTGGAT-TCTAGTATTGATCTTCATTCATTTCGAGATTAGGCACTATAAAAACATTATCCTC-
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * * *
2091552 ATAAGATTAATGTTATTGACGATTTTCTTTTGCATTGAAATCTTTCCTTTACCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2091617 AAGTCAAAGTTCATCCCTTAAATAAGAAAAACATCGATTCCCGTGACAATCTCCATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * *
2091682 GATTGGGATACAAAAACACATTCGATTCATTAGGATACATGATAGTGATGCTTTGGGGTCGCATG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * *
2091747 AAAAG-TGTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATATACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * ** ** ** **
2091811 TAGTCATACTAATCTCCATTTTTTTCGGGATTAGGCACCATAAATGTAGTCTT-T-TGTAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
* *
2091874 ACACGATATTGATGCTTTCATT
454 ACACGATATTGGTGCTTTCGTT
* * * ** * *
2091896 TCACAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCAAAGGTCGTGTCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
** * * ** * * *
2091961 AAATGAAT-TCTAGTTTTGACCTTCATTCATTTTGTGATTAGGTGCAATAAAAACGTTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* ** * * *
2092025 TTAAGATTAATGATATTGATGAATTTCTTTTGTGTTGAAATCTTTTTTTTGCACTATTTTCTTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2092090 AAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCATAACAATCCCCATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* ** * ** *
2092155 GATTGGGATCCAAAAACATATTCCCTTCGTTAGGATACATGACTTTGAAGCTTTGGTGTCGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* ** * * * *
2092220 AAATGCTTTTCTTTCTGCCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATCAGACAGACATGA
325 AAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
** * * * *
2092285 ATACTTGTACTATTCCCCATTCCTTTCAAGATTAGGTACTTTAAACATAATCTTCTCATTAGGAT
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGAT
* *
2092350 ACATGATATTGGTGCTTTAGTT
454 ACACGATATTGGTGCTTTCGTT
* * * *
2092372 TCGCAAGACAAGG--GTTTTCCCACCAATTTTTATAAAAGTCAAAATTCATGCCACAAATGAGCC
1 TCGCAAGA-AAGGCTTTTTTCCCACCAATTTTTGT-AAAGTCAAAATTCGTGCCTCAAATGAGCC
* *
2092435 AAACGTGGAT-TCTAGTTTTGAT-TCTCATTCATTTTGTGATTAGGCACAATAAAAGCATTCTCC
64 AAACGTGGATAT-TAGTTTTGATCT-TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCC
* * *
2092498 TCTTTAAGATTAAGGATATTGATGATTTT-TTCTTGCGTTGAAATCTTTTCATTGCCCTATTTTC
127 TCTTTAAGATTAATGATATTGATGATTTTCTT-TTGCATTGAAATCTTTTCTTTGCCCTATTTTC
* * * * ** *
2092562 CTTAAAATCAAAGTTCATCTCTTAAATAAAAGAAGCATCGATTCTCGTAATAGCCTCTATTCTTT
191 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTT
* * * * *
2092627 TCAAGATTAGGATCCAAAAACACATTCTATTCATTAGGATACATGAGAGAGAAGCTTTGGTGTCA
256 TCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCG
* * ** * * *
2092692 TAAGAAAAGCTTTTTTTTCGTCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAGGACAAACT
321 CAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *** ** ** **
2092757 TGAATAGTCATGCTAATCTCCATT-TTTTGGGGGATTAGGCACCATAAATGTAGTCTT-T-TGTA
386 TGAATACTCATACTATTCCCCATTCTTTT-CAAGATTAGGCACTTTAAACATAGTCTTCTCACT-
*
2092819 AGGATACACGATATTGATGCTTTCGTT
449 AGGATACACGATATTGGTGCTTTCGTT
** * ** * * *
2092846 TCGCAAGAAAGGCTTTCGTCCCTCCAATTTTTGTAAAGTCAAAGGTCATGTCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2092911 ACAT-GA-ATTCCAATTTTGACCTTCATTCATTTTGCGATTAGGCACAATAAAAACATTCTCCTC
66 ACGTGGATATT--AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * * *
2092974 ATTAAGATTAATGATATTGATGAATTTCTTTTGCGTTGAAATCTTTTTTTTTTCTGCCCTATTTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATC---TTTTCTT-TGCCCTATTTT
* * **
2093039 CCTTAAAATCAAAGTTTATTCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTCTT
190 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTT
* * *
2093104 TTCGAGATTAGGATCCAAAAACACATTCTATTCATTAGGATACATGGCAGTGATGCTTTGGTGTC
255 TTCAAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTC
**** * ** *
2093169 GCAAGAAAAGCTTTTTTTTGGTCGTTTTTGATAGAATCAAAGTTAGTCTCTTAAATCGGACGAAC
320 GCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
2093234 TTGAATACACATATTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACCA
385 ATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
* * * *
2093299 AGATACACGATATTGGCGCTTTGGAT
450 GGATACACGATATTGGTGCTTTCGTT
* * * * **
2093325 TCACAAGAAAGGCTTTTTTCCCACCAATTTTTGAAAAGTCTAAGTTCGCACCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * * * *
2093390 ACGTGAAT-TCTAGTATTGATCTTCATCCATTTCGTGATTAGGCCCTATAAAAACATTATCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * * *
2093454 ATAAGATTAATGATATTGATGATTTTCTTTTTCAATGAAA--TTTTGTGTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
2093517 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCCCGTAACAA--T-C--TC--TTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
2093575 GATTGGGATCCAAAAACACATTCTATTCATTAGGTTACATGATAGTGATGCTTTGGGGTCACAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * *
2093640 AAAAG-TGTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGATAAACGTGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * ** ** ** **
2093704 TAGTCATACTAATCTCCATTTTTTTCGGGATTAGGCACCATAAATGTAGTCTT-T-GGTAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
* *
2093767 ACATGATATTGATGCTTTCGTT
454 ACACGATATTGGTGCTTTCGTT
* * * * ** * *
2093789 TAGCAAGAAAGGATTTCTTCCCTCCAATTTTTGTAAAGTCAAAGGTCGTGTCTTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
** * * * * *
2093854 AAATGAAT-TCTAGTTTTAACCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* ** *
2093918 TTAAGATTAATGATATTGATGAATTTCTTTTGTGTTGAAATCTTTT-TTTTCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2093982 AAATCAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTCATAACAATCTCCATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * ** * *
2094047 GATTAGGATCCAATAACACATTCTGTTCCCTAGGATACATGATAGTGATGCTTTGGTGTCGTAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * * ** * *
2094112 AAAAGATTTTTTT-CACCGCTTTTGATAGAGTCAAAGTTGGTCTCTTAAATCGGAGAATCATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * *
2094176 TACTCGTACTATTCCCAATTCTTTTCAATATTAGGCACTTTAAACATAGTCTTCTCACTAAGATA
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGATA
* * *
2094241 CATGATATTGGTGCTTTGGAT
455 CACGATATTGGTGCTTTCGTT
* * * *
2094262 TCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* ** * *
2094327 ACGTGGAT-TCTAGTATTGATCTTCACGCATTTTGTGATT-GGCACTATAAAAACATTATCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * *
2094390 ATAAGATTAATGATATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCTTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2094455 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* *
2094520 GATTGGGATCCAAAAACGCATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTTGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * ***
2094585 AAAAG-TTTTTTTCCACCATTTTTGATAGAATCATAGTTTGTCACTTAAATAAGTGGAACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * ** * ** ** * *
2094649 CAGTCATACTAATCTTCATT-TTTTCGAGATTAGGCACCATAAATGTTGTCTTCT--GTAAGGAT
390 TACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AGGAT
* * * *
2094711 ATACGATATTGATACTTTCATT
454 ACACGATATTGGTGCTTTCGTT
* * * * * * * * * *
2094733 TTGCAAGAAAAGCTTTCTTCCCTCCAA-TTTTGTAAAGTTAAAGTTTG-GTCTTAAATTAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2094796 ACATGAAT-TCTA-TATTGATATTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * * * * * *
2094859 ATAAGATTAACGATATTGATGAGTTTCTTCTACACTGAAATCTATTCTTTGCCCTATTTTTCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2094924 AAATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATGCTCGCAACAATCTCCATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
** ** * * * * **
2094989 GATTGATATCCAAAAACACATTCCCTTCATTAGGGTACATGGCATTGACGCTTCAGTGTCGCAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * * *
2095054 AAATGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGG
325 AAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * ** **
2095119 ATACTCGTACTATT-CCCATTCTTTTCATGATTAGGCAATTTAAACATAACCTTCTCGTTAGGAT
389 ATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGAT
* *
2095183 ACACGATATTGGTGCCTTGGTT
454 ACACGATATTGGTGCTTTCGTT
* * * * *
2095205 TCGTAAGAAAGGCTTTTTTGCCCATCAATATTTCTAAAGTCAAAATTCATGCCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTT-CCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
2095270 AACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTTTAAAAATATTTTCCTC
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* *
2095334 ATTAAGATTAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTCT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCT
* * * *
2095398 TAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCATAACAATCTCCATTGTTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* * * * *
2095463 AAGATTGGGATCCCAAAACATATTTTATTCATTAGGATACATGACAATGATGCTTTGGTGTTGCA
258 AAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCA
* **
2095528 AGAAAAGCATTTTTTCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
323 AGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * *
2095593 GATAC-CTATACTATTCCCCATTCTTTTCAAGATTAGTCACTTTAAACATAGTTTTCTCAATAGG
388 AATACTC-ATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGG
* * *
2095657 ATGCACAATATTGGTGCTTTGGTT
452 ATACACGATATTGGTGCTTTCGTT
* * ** *
2095681 TTGCAAGAAAGGCTTTTTTCCAAATAAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATAAGCCA
1 TCGCAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* * *
2095746 AACATGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTTTAAAAACATTGTCCTC
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * * *
2095810 ATTAAGATTAATGATATTGATAATTTTCTTTTGCATTGAAATCTTTTCATTGCCCAATTTTCCTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
*
2095875 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * * *
2095940 AGATTGGGATCCAAAAACACATTGC-CTTCATTAGGACACATGGCATTGATG-TCTTGGTGTCAC
259 AGATTGGGATCCAAAAACACATT-CTATTCATTAGGATACATGACAGTGATGCT-TTGGTGTCGC
* * *
2096003 AAGAAATGCTTTTCTTTCCACCGTTTTTTGATAGAATCAAAGTTTGTCCCCTAAATAAGACAAAC
322 AAGAAAAGCTTTT-TTTCCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* ** * * * * **
2096068 ATGAATAGTCATACTAATT-TTCATT-TTTTTAGGGATTGGGCAGC-GTAAATGTAGTCTTCTC-
385 ATGAATACTCATACT-ATTCCCCATTCTTTTCA-AGATTAGGCA-CTTTAAACATAGTCTTCTCA
* * * *
2096129 GTAAGGATACACAATATTGATGCTTTCATT
447 CT-AGGATACACGATATTGGTGCTTTCGTT
* * * *
2096159 TCACAAGAAAGGC-TTTTTCCCACTAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGACCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * ** *
2096223 ACGTGGAT-TCTGGTTTTCATCTTCACCCATTTTGTGATAAGGCACTATAAAAACATTCTCCTCT
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* ** *
2096287 TTAAGATTAATGATATTGATGATTTTTTTTTTGCATCAAAAACTTTTCTTTGCCCTATTTTCCTT
130 TTAAGATTAATGATATTGATGA-TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
2096352 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * *
2096417 AGATTGGGATCCAAAAACACATTCTATTCGTTAGGATGCATGACAGAGATGCTTTGGTGTCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* * *
2096482 GAAAAGC-TTTTTTCCACCCTTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATG
324 GAAAAGCTTTTTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * *
2096546 GATACTTATACTATTCCCTATTCTTTTCAAGATTAGGCACTTTAAACGTAGTCTTCTCAATAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* * * *
2096611 TGCACAATATTGGGGCTTTGGTT
453 TACACGATATTGGTGCTTTCGTT
* * ** *
2096634 TCGCAAGAAAAGCTTTTTTCCAAATAAATTTTTGTAAAGTCAAAATTTGTGCCTCAAATGAGCCA
1 TCGCAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCA
* *
2096699 AACGTGGAT-TCTAGTTTTGATCTTCATTCATTTAGTGATTAGGCACTATAAAAACATTGTCCTC
65 AACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTC
* * *
2096763 ATTAAGATTAATGATATTGATTATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTTCTT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
* * *
2096828 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGCAATAATCTCCATTCTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * * * * * *
2096893 GGATTAGGATCCAAAAACACATTGC-CTTCATTAGGATACCTGGCATTGATGCCTTGGTGTCGTA
259 AGATTGGGATCCAAAAACACATT-CTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCA
* ** *
2096957 AGAAATGCTTTTCTTTCTGCCGTTTTTCGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACA
323 AGAAAAGCTTTT-TTTCCACCGTTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
** * * * * *
2097022 TGAATACTTGTACTATTCCCTAGTT-TTTTCAAGATTCGACATTTTAAACATAGTCTTCTCATTA
386 TGAATACTCATACTATTCCCCA-TTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTA
*
2097086 GGATACACGATATTGGTGCTTTGGTT
450 GGATACACGATATTGGTGCTTTCGTT
* *
2097112 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTCTAAAGTCAAAATGCGTGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
** * * *
2097177 ACAAGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTTGGCACTATAAAAACATTTTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * *
2097241 CTAAGATTAATGATATTGATGATTTT-TTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTCGT
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTT
*
2097304 AAAATCAAAGTTCA-CCTCCTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
194 AAAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* *
2097368 AAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGATAGTGATGCTTTGGTGTTGCA
258 AAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCA
* ** * * *
2097433 AGGAAAGC-TTTTTTCTGCCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGATAAACATG
323 AGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * ** ** ** *
2097497 AATAGTCATACAAATT-TCCATTTTTTTCGGGATTAGGCACCATAAATGTAGTCTTCT--GTAAG
388 AATACTCATAC-TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-AG
* * *
2097559 GATATACGATATTGATGCTTTCATT
451 GATACACGATATTGGTGCTTTCGTT
* * * *** * *
2097584 TCGCAAGAAAGGCTTTCTTCCCTCCGATTTTTGTAAAGTCAATGGTCGTGCATTAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * * *
2097649 ACATGAAT-TCTAGTTTTGACCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCTCA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * *
2097713 TTAAGATTAATGATATTGATGAATTTCTTTTGCGTTGAAATCTTTTTTTTGCCCAATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2097778 AAATCAAAGTTCATTCCTTAAATAAGATATGCATCGATTCTCATAACAATCTCCATTCTTTTCAT
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * *
2097843 GATTAGGATCCAAAAACACATTCTGTTCACTAGGATACATGATAGTGATGCTTTGCTGTCACAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* *
2097908 AAAAGCTTATTTT--ACCATTTTTGATAGAATCAAA-TTTGGTCTCTTAAA-ACAGACAAACATG
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTT-GTCTCTTAAATA-AGACAAACATG
2097969 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
* *
2098034 TACACGATATTGGTGCTTTGGAT
453 TACACGATATTGGTGCTTTCGTT
* * * * ** **
2098057 TCGCAAGAAAAGCTTTTGTCCCACCAATTTTTGT-AAGCCTATGTTCGCACCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2098121 ACGTGGAGT-CTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTATCCTCA
66 ACGTGGA-TATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* *
2098185 ATAAGATTCATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2098250 AAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCTTTTCAA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
2098315 GATTGGGATCCAAAAATATATTCTATTCATTAGGATACATTACAGTGATGCTTTGGTGTCACAAG
260 GATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAG
* * * *
2098380 AAAAG--TTTTTTCCACCGTTTTTGATAGAATCAGAGTTTATCCCTCAAATAAGACAAACATGAA
325 AAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * ** * * * ** *
2098443 TAGTCAAACTAATCTCTGTTTTATTTCGAGATTAGGCA-TCATAAATGTAGTCTTCT--GTAAGG
390 TACTCATACTATTCCCCATTCT-TTTCAAGATTAGGCACT-TTAAACATAGTCTTCTCACT-AGG
* * *
2098505 ATATACGATATTGATACTTTCGTT
452 ATACACGATATTGGTGCTTTCGTT
* ** * * *
2098529 TCGCAAGAAAGACTTCCTTCCCTCCAA-TTTTGTAAAGTCTAAATTTGTGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* *
2098593 ACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTTTGTTTAGGCACTATAAAAACATTCAT-CTC
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC-TCCTC
*** * * ** *
2098656 AACAAGATTAATGATATTAATGATTTTCTTTTGCATTAAAATCTATTT-TTAACCCTA-TGTCCT
129 TTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCT-TTTCTTTGCCCTATTTTCC-
** *
2098719 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTAATTCTCGCAACAATCTCCATTCTTTT
192 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTT
** * * * *
2098784 CAAGATTGGGATCCAAAAACACATTCCCTTCATTA-GAGTACATGGCATTGATGCTTCGATGTCG
257 CAAGATTGGGATCCAAAAACACATTCTATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTCG
* * *
2098848 CAGGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAAC
321 CAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * ** ** * * *
2098913 ATGAATAGTTATACTAATT-TCCATTCTTTTC-GGATTAGGCACAATAAATGTAGTTTTTTC-GT
385 ATGAATACTCATACT-ATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT
* *
2098975 AAGGATACACGGTATTGATGCTTTCGTT
449 -AGGATACACGATATTGGTGCTTTCGTT
* * *** * * *
2099003 TCACAAGAAAGCCTTTTTTCTTGCCAATTTTTTTAAAGTCAAAGTTCATGCCTCAAATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2099068 ACGTGGAT-TCTAGTTTTGATCTTCGTTCATTTTCTGATTAGGCATTATAAAAACATTCT-C-CA
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
* * * **
2099130 TTAAGATTAAAGATATAGACGATTTTCTTTCACA-TGAAAATCTTTTCTTTGCCCTATTTTCCTT
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
2099194 AAAATCAAAGGTCATCCCTTAAATAAGACAAGCATCGATTTTCATAACAATCTCCATTGTTTTCA
194 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
*
2099259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACTTGACAGTGATGCTTTGGTGTCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* *** * *
2099324 GAAAAGCATTTTTTCTGTCGTTCTTTTGCA-A-AATCAAAGTTTGTCTTTTAAATAAGACAAAGA
324 GAAAAGCTTTTTTTCCACCG-T-TTTTG-ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
2099387 GGAATACTCTTACTATTCCCCATTCTTTTTATGATTAGGCACTTTAAACATAATCTTCTC-GTAA
386 TGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACT-A
** *
2099451 GGATACACGATATTGACGGTTTCGTT
450 GGATACACGATATTGGTGCTTTCGTT
* * * *
2099477 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTTGTGCCTCACATGAGCCAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
* * * *
2099542 ACGTGGAT-TCTAGTTTTGATCTTCATTCATTTTGTGATTAAGCCCAATAAAAACATTCTCCTCG
66 ACGTGGATAT-TAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCT
*
2099606 TTAAGATTAATGATATTGATTATTTT-TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
130 TTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2099670 AAATCAATGTTCATCCCTTAAATAAAACAAGGATCGATTCTTGCAACAATC-CCAATTCTTTTCA
195 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC-ATTCTTTTCA
* ** ** *
2099734 AGATTGGGATCCAAAAACATATTCCCTTCATTAGGATACATGACTTTGAAGCTTTGGTGTCGCAA
259 AGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAA
* * * **
2099799 GAAATGCTTTTCTTTCTATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATCTGACAAACATG
324 GAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
** * * * * *
2099864 AATACTTGTACTGTTCCCCACTCCTTTCAAGATTAGGCACTTTAAACATAATCTTCTCATTAGGA
388 AATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGA
*
2099929 TACACGATATTGGTGCTTTGGTT
453 TACACGATATTGGTGCTTTCGTT
* * * * * *
2099952 TCGTAAGAAAGGGTTTTTTTTCCCACCAATTTTTATAAAGTCAAAACTCATGCCACAAATGAGCC
1 TCGCAAGAAA-GG-CTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCC
*
2100017 AAACGTGGAT-TTGAGTTTTGATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTCTCCT
64 AAACGTGGATATT-AGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCT
* ** * *
2100081 CTTTAAGATTAATGATATTCATGATTTTCTTTCACATTAAAATCTTTTCATTGCCCTATTTTCCT
128 CTTTAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCT
* * * ** * *
2100146 TAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGCAATAGCCTCTAATCTTTTC
193 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
* * * *
2100211 AAGATTGGGATCCAAAAACACACTCTATTCGTTTGGATACATGACAGTGATGCTTTGGTGTTGCA
258 AAGATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCA
** *
2100276 AGAATGGCTTTTTTT-CACCCTTTTTGATAGAATCAAAG-TTGATCTCTTA
323 AGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTG-TCTCTTA
2100325 TTCTTTTCAA
Statistics
Matches: 22266, Mismatches: 3558, Indels: 1067
0.83 0.13 0.04
Matches are distributed among these distances:
435 7 0.00
436 221 0.01
437 50 0.00
438 1 0.00
441 2 0.00
442 3 0.00
443 223 0.01
444 9 0.00
445 61 0.00
446 15 0.00
447 7 0.00
448 1 0.00
449 7 0.00
450 1 0.00
451 8 0.00
452 77 0.00
453 161 0.01
454 136 0.01
455 114 0.01
456 117 0.01
457 1 0.00
458 4 0.00
459 1 0.00
460 2 0.00
462 9 0.00
463 9 0.00
464 455 0.02
465 325 0.01
466 298 0.01
467 111 0.00
468 75 0.00
469 724 0.03
470 85 0.00
471 425 0.02
472 1799 0.08
473 3721 0.17
474 2889 0.13
475 3420 0.15
476 3729 0.17
477 1202 0.05
478 1014 0.05
479 203 0.01
480 63 0.00
481 1 0.00
482 71 0.00
485 71 0.00
488 1 0.00
489 1 0.00
490 1 0.00
491 13 0.00
492 218 0.01
493 104 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCAAAATTCGTGCCTCAAATGAGCCAA
ACGTGGATATTAGTTTTGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTT
TAAGATTAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAA
AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
ATTGGGATCCAAAAACACATTCTATTCATTAGGATACATGACAGTGATGCTTTGGTGTCGCAAGA
AAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
ACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCACTAGGATAC
ACGATATTGGTGCTTTCGTT
Found at i:2095440 original size:159 final size:158
Alignment explanation
Indices: 2093889--2098290 Score: 664
Period size: 159 Copynumber: 27.8 Consensus size: 158
2093879 TTCATTTTGT
** * * **
2093889 GATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAATTT-CTTTTGTGT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATG-ATTTGCTTTTG-CA
* * * * * * *
2093953 TG-AAATCTTTTTTTTCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATT
64 AGAAAAGCTTTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATG
***
2094017 GATTCTCATAACAATCTCCATTC-TTTTCAA
129 GATTCT-ATATTGATCTCCATTCATTTTCAA
** * * ** ** * * * * * * *
2094047 GATTAGG-A-TCCAATAACACATTCTGTTCCCTAGGA-TACATGATAGTGATGCTTTGGTGTCGT
1 GATTAGGCACTTTAA-AA-ATATTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGC
* ** ** * * ** * ** * *
2094109 AAGAAAAGATTTTTTT-CACC-GCTTTTGATAGAGTCAAAGTTGGTCTCTTAAATCGGAGAATCA
63 AAGAAAAGCTTTTTTTGC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
* * * *
2094172 TGAATACTCGTACT-AT-TCCCAATTC-TTTTCAA
127 TGGATTCT-ATATTGATCT-CC-ATTCATTTTCAA
* * * * * * ** *
2094204 TATTAGGCACTTTAAACATAGTCTT-CTCACTAAGA-TACATGATATTGGTGCTTTGGATTCGCA
1 GATTAGGCACTTTAAAAATA-TTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGCA
** * * * * * * * * *
2094267 AGAAAAGCTTTTTTCCCACCAATTTTT-GTAAAGTCTAAGTTC-GCGCCTCAAATGAGCCAAACG
64 AGAAAAGCTTTTTTTGC-CCTATTTTTCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAACA
* ** **
2094330 TGGATTCTAGTATTGATCTTCACGCATTTT-GT
127 TGGATTCTA-TATTGATCTCCATTCATTTTCAA
* * * * * **
2094362 GATT-GGCACTATAAAAACATTATCCTCAATAAGATTAATGATATTGATGATTTTCTTTTGCATT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCAAG
* * * * *
2094426 AAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
66 AAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGG
*
2094491 ATTCTCATAAT-AGTCTCCATTC-TTTTCAA
130 ATTCT-ATATTGA-TCTCCATTCATTTTCAA
* ** * * ** * * * * * *
2094520 GATT-GGGA-TCCAAAAACGCATTCTATTCATTAGGA-TACATGACAGTGATGCTTTGGTGTTGC
1 GATTAGGCACTTTAAAAA--TATTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGC
* ** * * ** * ***
2094582 AAGAAAAG-TTTTTTT-CCACCATTTTTGATAGAATCATAGTTTGTCACTTAAATAAGTGGAACA
63 AAGAAAAGCTTTTTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
* * * * * *
2094645 TGAACAGTC-ATACTAATCTTCATT--TTTTCGA
127 TG--GATTCTATATTGATCTCCATTCATTTTCAA
* * * * * *
2094676 GATTAGGCAC--CATAAATGTTGTCTTC-TGTAAGGA-TATACGATATTGAT-ACTTT-CATTTT
1 GATTAGGCACTTTAAAAATATTTTCCTCAT-TAA-GATTA-ATGATATTGATGA-TTTGC-TTTT
* * * * * ** * *
2094735 GCAAGAAAAGC-TTTCTT-CCCTCCAATTTT-GTAAAGTTAAAGTT--TGGTCTTAAATTAGCCA
61 GCAAGAAAAGCTTTTTTTGCCCT--ATTTTTCTTAAAATCAAAGTTCAT-CCCTTAAATAAGACA
* * * **
2094795 AACATGAATTCTATATTGATATTCATTCATTTT-GT
123 AACATGGATTCTATATTGATCTCCATTCATTTTCAA
* * * * * * *
2094830 GATTAGGCACTATAAAAACATTCTCCTCAATAAGATTAACGATATTGATGAGTTT-CTTCTACAC
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGA-TTTGCTTTTGCA-
* * * * *
2094894 TG-AAATCTATTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCAT
64 AGAAAAGCT-TTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* * ** ***
2094958 TGATGCTCGCAACAATCTCCATTC-TTTTCAA
128 GGATTCT-ATATTGATCTCCATTCATTTTCAA
** ** * * * ** ** * * * * *
2094989 GATT-GATA-TCCAAAAACACATTCCCTTCATT-AGGGTACATGGCATTGACGCTTCAG-TGTCG
1 GATTAGGCACTTTAAAAATA-TTTTCC-TCATTAAGATTA-ATGATATTGATGATT-TGCTTTTG
* * ** * ** *
2095050 CAAGAAATGCTTTTCTTT-CCATCATTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAA
62 CAAGAAAAGCTTTT-TTTGCCCT-ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAA
* * * *
2095114 CATGGATACTCGTACT-AT-TCCCATTC-TTTTCAT
125 CATGGATTCT-ATATTGATCT-CCATTCATTTTCAA
* * ** * * * * ** * * *
2095147 GATTAGGCAATTTAAACATAACCTT-CTCGTTAGGA-TACACGATATTGGTGCCTTGGTTTCGTA
1 GATTAGGCACTTTAAAAAT-ATTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGCA
* * * * * * * *
2095210 AGAAAGGC-TTTTTTGCCCATCAATATTTC-TAAAGTCAAAATTCATGCCTCAAATGAGCCAAAC
64 AGAAAAGCTTTTTTTGCCC-T--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * * **
2095273 GTGGATTCTAGTTTTGATCTTCATTCATTTT-GT
126 ATGGATTCTA-TATTGATCTCCATTCATTTTCAA
* *
2095306 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATG
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCAAG
* * * **
2095371 AAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCA
66 AAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGG
*** *
2095436 ATTCTCATAACAATCTCCATT-GTTTTCAA
130 ATTCT-ATATTGATCTCCATTCATTTTCAA
* ** ** * * * * * *
2095465 GATT-GGGA-TCCCAAAACATATTTTATTCATTAGGA-TACATGACAATGATGCTTTGGTGTTGC
1 GATTAGGCACT-TTAAAA-ATATTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGC
* ** * ** *
2095527 AAGAAAAGCATTTTTTCTG-CC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
63 AAGAAAAGC-TTTTTT-TGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * *
2095590 ATGGATACCTATACT-ATTCCCCATTC-TTTTCAA
126 ATGGAT-TCTATATTGA-TCTCCATTCATTTTCAA
* * * * ** ** * * *
2095623 GATTAGTCACTTTAAACATAGTTTT-CTCAATAGGATGCACAATATTGGTGCTTTGGTTTTGCAA
1 GATTAGGCACTTTAAAAATA-TTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCAA
* * * * * * * * *
2095687 GAAAGGC-TTTTTT-CCAAATAAATTTTT-GTAAAGTCAAAATTCGTGCCTCAAATAAGCCAAAC
65 GAAAAGCTTTTTTTGCC--CT--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * **
2095749 ATGGATTCTAGTTTTGATCTTCATTCATTTT-GT
126 ATGGATTCTA-TATTGATCTCCATTCATTTTCAA
* * * * *
2095782 GATTAGGCACTTTAAAAACATTGTCCTCATTAAGATTAATGATATTGATAATTTTCTTTTGCATT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCA-A
* * * * * *
2095847 G-AAATCTTTTCATTGCCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATT
65 GAAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATG
* ***
2095911 GATTCTCGTAACAATCTCCATTC-TTTTCAA
129 GATTCT-ATATTGATCTCCATTCATTTTCAA
* ** * * * * * ** * * **
2095941 GATT-GGGA-TCCAAAAACACATTGCCTTCATTAGGA-CACATGGCATTGATG-TCTTGGTGTCA
1 GATTAGGCACTTTAAAAATA-TTTTCC-TCATTAAGATTA-ATGATATTGATGAT-TTGCTTTTG
* * ** * ** *
2096002 CAAGAAATGCTTTTCTTTCCACCGT-TTTTTGATAGAATCAAAGTTTGTCCCCTAAATAAGACAA
62 CAAGAAAAGCTTTT-TTTGC-CC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * * * *
2096066 ACATGAATAGTC-ATACTAATTTTCATT--TTTTTAGG
124 ACATGGAT--TCTATATTGATCTCCATTCATTTTCA-A
* * ** * * ** * *
2096101 GATTGGGCAGC-GTAAATGTAGTCTT-CTC-GTAAGGA-TACACAATATTGATGCTTT-CATTTC
1 GATTAGGCA-CTTTAAAAATA-TTTTCCTCATTAA-GATTA-ATGATATTGATGATTTGC-TTTT
* * * * * * * * * **
2096161 ACAAGAAAGGC--TTTTTCCCACTAATTTTT-GTAAAGTCAAAGTTCGTGCCTCAAATGACCCAA
61 GCAAGAAAAGCTTTTTTTGCC-CT-ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * * ** **
2096223 ACGTGGATTCTGGTTTTCATCTTCACCCATTTT-GT
124 ACATGGATTCT-ATATTGATCTCCATTCATTTTCAA
* * * * * ** *
2096258 GATAAGGCACTATAAAAACATTCTCCTCTTTAAGATTAATGATATTGATGATTTTTTTTTTGCAT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGA-TTTGCTTTTGCAA
* * * * *
2096323 CAAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
65 GAAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATG
* ***
2096388 GATTCTCGTAACAATCTCCATTC-TTTTCAA
129 GATTCT-ATATTGATCTCCATTCATTTTCAA
* ** * * ** * * ** * ** * * * *
2096418 GATT-GGGA-TCCAAAAACACATTCTATTCGTTAGGATGCATGACAGAGATGCTTTGGTGTCGCA
1 GATTAGGCACT-TTAAAA-ATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCA
** * * *
2096481 AGAAAAGCTTTTTTCCACCCT-TTTTT-TATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
64 AGAAAAGCTTTTTT-TGCCCTATTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
* *
2096544 TGGATACTTATACT-AT-TCCCTATTC-TTTTCAA
127 TGGATTC-TATATTGATCT-CC-ATTCATTTTCAA
** * * * ** ** ** * * *
2096576 GATTAGGCACTTTAAACGTAGTCTT-CTCAATAGGATGCACAATATTGGGGCTTTGGTTTCGCAA
1 GATTAGGCACTTTAAAAATA-TTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCAA
* * * * ** * * * *
2096640 GAAAAGC-TTTTTT-CCAAATAAATTTTT-GTAAAGTCAAAATTTGTGCCTCAAATGAGCCAAAC
65 GAAAAGCTTTTTTTGCC--CT--ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * * *
2096702 GTGGATTCTAGTTTTGATCTTCATTCA-TTT-AGT
126 ATGGATTCTA-TATTGATCTCCATTCATTTTCA-A
* * * * * *
2096735 GATTAGGCACTATAAAAACATTGTCCTCATTAAGATTAATGATATTGATTATTTTCTTTTGCATT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCA-A
* * *
2096800 G-AAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATT
65 GAAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATG
** * * *
2096864 GATTCTCGCAATAATCTCCATTC-TTTTCAG
129 GATTCT-ATATTGATCTCCATTCATTTTCAA
** * * * * * ** ** * * * *
2096894 GATTAGG-A-TCCAAAAACACATTGCCTTCATTAGGA-TACCTGGCATTGATGCCTTGGTGTCGT
1 GATTAGGCACTTTAAAAATA-TTTTCC-TCATTAAGATTA-ATGATATTGATGATTTGCTTTTGC
* * * * ** * *
2096956 AAGAAATGCTTTTCTTT-CTGCC-GTTTTTCGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAA
63 AAGAAAAGCTTTT-TTTGC--CCTATTTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
2097019 ACATGAATACTTGTACT-AT-TCCCTAGTT--TTTTCAA
124 ACATGGATTC-TATATTGATCT-CC-A-TTCATTTTCAA
* * * * * * * * * * *
2097054 GATTCGACATTTTAAACATAGTCTT-CTCATTAGGA-TACACGATATTGGTGCTTTGGTTTCGCA
1 GATTAGGCACTTTAAAAATA-TTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGCA
* ** * * * * * * * * * *
2097117 AGAAAGGCTTTTTTCCCACCAATTTTTC-TAAAGTCAAAATGCGTGCCTCAAATGAGCCAAACAA
64 AGAAAAGCTTTTTTTGC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* * **
2097181 GGATTCTAGTTTTGATCTTCATTCATTTT-GT
128 GGATTCTA-TATTGATCTCCATTCATTTTCAA
* * * * * *
2097212 GATTTGGCACTATAAAAACATTTTCCTCACTAAGATTAATGATATTGATGATTT-TTTTTGCATG
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCAAG
* * * * *
2097276 AAAATCTTTTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCA-CCTCCTAAATAAGACAAGCATC
66 AAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAACATG
* ***
2097340 GATTCTCGTAACAATCTCCATTC-TTTTCAA
129 GATTCT-ATATTGATCTCCATTCATTTTCAA
* ** * * ** * * * * *
2097370 GATT-GGGA-TCCAAAAACACATTCTATTCATTAGGA-TACATGATAGTGATGCTTTGGTGTTGC
1 GATTAGGCACT-TTAAAA-ATATTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGC
* ** * ** *
2097432 AAGGAAAGCTTTTTTCTG-CC-ATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGATAAACA
63 AAGAAAAGCTTTTTT-TGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
* *** * * **
2097495 TGAATAGTC-ATACAAATTTCCATT-TTTTTCGG
127 TGGAT--TCTATATTGATCTCCATTCATTTTCAA
** ** * * * * *
2097527 GATTAGGCACCATAAATGTAGTCTT-CT--GTAAGGA-TATACGATATTGATGCTTT-CATTTCG
1 GATTAGGCACTTTAAAAATA-TTTTCCTCATTAA-GATTA-ATGATATTGATGATTTGC-TTTTG
* * ** * * * * * * * * * *
2097587 CAAGAAAGGCTTTCTTCCCTCCGATTTTT-GTAAAGTCAATGGTCGTGCATTAAATGAGCCAAAC
62 CAAGAAAAGCTTTTTTTGC-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * * * **
2097651 ATGAATTCTAGTTTTGACCTTCATTCATTTT-GT
126 ATGGATTCTA-TATTGATCTCCATTCATTTTCAA
** * * *
2097684 GATTAGGCACAATAAAAACATTCTCCTCATTAAGATTAATGATATTGATGAATTT-CTTTTGCGT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATG-ATTTGCTTTTGC-A
* * * * * * **
2097748 TG-AAATCTTTTTTTTGCCCAATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGATATGCAT
64 AGAAAAGC-TTTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* *** *
2097812 CGATTCTCATAACAATCTCCATTC-TTTTCAT
128 GGATTCT-ATATTGATCTCCATTCATTTTCAA
** * * ** * * * * * **
2097843 GATTAGG-A-TCCAAAAACACATTCTGTTCACTAGGA-TACATGATAGTGATGCTTTGCTGTCAC
1 GATTAGGCACT-TTAAAA-ATATTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGC
* * ** * * ** *
2097905 AAGAAAAGCTTATTTT-ACC-ATTTTTGATAGAATCAAATTTGGTCTCTTAAA-ACAGACAAACA
63 AAGAAAAGCTTTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAACA
* * * *
2097967 TGAATACTCATACT-ATTCCCCATTC-TTTTCAA
127 TGGATTCT-ATATTGA-TCTCCATTCATTTTCAA
* * * * * * * ** *
2097999 GATTAGGCACTTTAAACATAGTCTT-CTCACTAGGA-TACACGATATTGGTGCTTTGGATTCGCA
1 GATTAGGCACTTTAAAAATA-TTTTCCTCATTAAGATTA-ATGATATTGATGATTTGCTTTTGCA
* ** * * ** * * * * * * *
2098062 AGAAAAGCTTTTGTCCCACCAATTTTT-GT-AAGCCTATGTTC-GCACCTCAAATGAGCCAAACG
64 AGAAAAGCTTTTTTTGC-CCTATTTTTCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAACA
* * **
2098124 TGGAGTCTAGTATTGATCTTCATTCATTTT-GT
127 TGGATTCTA-TATTGATCTCCATTCATTTTCAA
* * * * * * *
2098156 GATTAGGCACTATAAAAACATTATCCTCAATAAGATTCATGATATTGATGATTTTCTTTTGCATT
1 GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCA-A
* * * * *
2098221 G-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATC
65 GAAAAGCTTTT-TTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATG
2098285 GATTCT
129 GATTCT
2098291 CGTAACAGTC
Statistics
Matches: 2964, Mismatches: 1018, Indels: 523
0.66 0.23 0.12
Matches are distributed among these distances:
152 3 0.00
153 14 0.00
154 35 0.01
155 83 0.03
156 215 0.07
157 610 0.21
158 781 0.26
159 867 0.29
160 309 0.10
161 29 0.01
162 18 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
GATTAGGCACTTTAAAAATATTTTCCTCATTAAGATTAATGATATTGATGATTTGCTTTTGCAAG
AAAAGCTTTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGA
TTCTATATTGATCTCCATTCATTTTCAA
Found at i:2128281 original size:158 final size:159
Alignment explanation
Indices: 2127963--2128293 Score: 427
Period size: 158 Copynumber: 2.1 Consensus size: 159
2127953 TCTAGTTTTG
*
2127963 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAAAGATATTAA
1 ATCTCCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAAAGATATTAA
* * *
2128028 TGATTTTCATTTGCATGAAAATGTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTT
66 TGATTTTCATTTGCATGAAAATCTTTTCTTTACCCTATTTTCCATAAAATCAAAGTTCATCTCTT
*
2128093 AAATTAGACAAGCATCAATTCTAGTAACA
131 AAATAAGACAAGCATCAATTCTAGTAACA
* * * * * *
2128122 ATCTCCATTCATTTTGTGATTAGGCCCTATAAACACATTCTCGTCATTAAGATTAATGATCTTGA
1 ATCTCCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAAAGATATTAA
* * * * *
2128187 TTA-TTTCTTTTGCATGGAAATCTTTTCTTTACCCTA-TTTCACATAATATCATAGTTCATCGT-
66 TGATTTTCATTTGCATGAAAATCTTTTCTTTACCCTATTTTC-CATAAAATCAAAGTTCATC-TC
* * * *
2128249 TTAAATAAGACAAGCTTCGATTCTCGTGACA
129 TTAAATAAGACAAGCATCAATTCTAGTAACA
*
2128280 ATCACCATTC-TTTT
1 ATCTCCATTCATTTT
2128294 CAAGTTTGGG
Statistics
Matches: 149, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 8 0.05
158 80 0.54
159 61 0.41
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (159 bp):
ATCTCCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAAAGATATTAA
TGATTTTCATTTGCATGAAAATCTTTTCTTTACCCTATTTTCCATAAAATCAAAGTTCATCTCTT
AAATAAGACAAGCATCAATTCTAGTAACA
Found at i:2128327 original size:158 final size:159
Alignment explanation
Indices: 2127500--2128346 Score: 401
Period size: 158 Copynumber: 5.4 Consensus size: 159
2127490 ATCTTCTTTT
* * *
2127500 ATTTTATGATTAGGCACTATAAAA-ACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
1 ATTTTAAGATTAGGCCCTA-AAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCA
* * * *
2127564 TTTGCAT-AGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
65 TTTGCATGA-AAATCTTTTCTTTACCCTATTTTCCATAAAATCAAAGTTCATCTCTTAAATAAGA
* * * *
2127628 CAAGGATCGATTCTCGTAACAATCTCCATTC
129 CAAGCATCAATTCTAGTAACAATCACCATTC
* * ** * ** * * * * * **
2127659 -TTTTCAACATTGGGATCTAAAAACATATTCTATTCATTAGGA-TACCTGACATTAATGCTTTGG
1 ATTTT-AAGATTAGGCCCTAAAAACACATTCTCCTCATTAAGATTA-ATGATATTGATGATTTTC
** * * * * * * ** * **
2127722 GGTCGCAAGGAAAGT-TTTT-TTCCACCGT-TTTT-GATAGTACCAAAGTTTGTCTCTTAAATAA
64 ATTTGC-ATGAAAATCTTTTCTT-TACCCTATTTTCCATAAAATCAAAGTTCATCTCTTAAATAA
* * * * * *
2127783 GACAAACATGAATACT--TATACTATTCTCTATTC
127 GACAAGCATCAATTCTAGTA-AC-AATCACCATTC
* ** *** * * * * * *
2127816 -TTTTCAAGATTAGGCACTTTAAACATGGTCTTCTCATTAGGA-TACACGATATTGGTG-CTTTG
1 ATTTT-AAGATTAGGCCCTAAAAACACATTCTCCTCATTAAGATTA-ATGATATTGATGATTTTC
* * ** ** * * * *
2127878 GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTT-TATAAAGTCAAAGTTCGTGC-CTT-AATA
64 ATTT-GCATGAAAATCTTTTCTTTAC-CCTATTTTCCATAAAATCAAAGTTCAT-CTCTTAAATA
* * * ** **** **
2127939 AGCCAAACGTGGATTCTAGTTTTGATCTTCATTC
126 AGACAAGCATCAATTCTAGTAACAATCACCATTC
** * * *
2127973 ATTTTGTGATTAGGCACTATAAAA-ACATTCTCCTCATTAAGATTAAAGATATTAATGATTTTCA
1 ATTTTAAGATTAGGCCCTA-AAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCA
* * * *
2128037 TTTGCATGAAAATGTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATTAGAC
65 TTTGCATGAAAATCTTTTCTTTACCCTATTTTCCATAAAATCAAAGTTCATCTCTTAAATAAGAC
*
2128102 AAGCATCAATTCTAGTAACAATCTCCATTC
130 AAGCATCAATTCTAGTAACAATCACCATTC
** * * * * *
2128132 ATTTTGTGATTAGGCCCTATAAACACATTCTCGTCATTAAGATTAATGATCTTGATTA-TTTCTT
1 ATTTTAAGATTAGGCCCTAAAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCAT
* * *
2128196 TTGCATGGAAATCTTTTCTTTACCCTA-TTTCACATAATATCATAGTTCATCGT-TTAAATAAGA
66 TTGCATGAAAATCTTTTCTTTACCCTATTTTC-CATAAAATCAAAGTTCATC-TCTTAAATAAGA
* * * *
2128259 CAAGCTTCGATTCTCGTGACAATCACCATTC
129 CAAGCATCAATTCTAGTAACAATCACCATTC
* * * * *
2128290 -TTTTCAAGTTTGGGATCC-AAAAACACATTCTCTTCATTAGGA-TATATGATATTGATG
1 ATTTT-AAGATTAGG-CCCTAAAAACACATTCTCCTCATTAAGATTA-ATGATATTGATG
2128347 CTTTGGTGTC
Statistics
Matches: 513, Mismatches: 146, Indels: 59
0.71 0.20 0.08
Matches are distributed among these distances:
155 2 0.00
156 15 0.03
157 178 0.35
158 189 0.37
159 124 0.24
160 4 0.01
161 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (159 bp):
ATTTTAAGATTAGGCCCTAAAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCAT
TTGCATGAAAATCTTTTCTTTACCCTATTTTCCATAAAATCAAAGTTCATCTCTTAAATAAGACA
AGCATCAATTCTAGTAACAATCACCATTC
Found at i:2128856 original size:475 final size:476
Alignment explanation
Indices: 2128122--2138368 Score: 12428
Period size: 475 Copynumber: 21.7 Consensus size: 476
2128112 TCTAGTAACA
* * * * *
2128122 ATCTCCATTCATTTTGTGATTAGGCCCTATAAACACATTCTCGTCATTAAGATTAATGATCTTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * * * **
2128187 TTA-TTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTCACATAATATCATAGTTCATCGTTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * * * *
2128251 AAATAAGACAAGCTTCGATTCTCGTGACAATCACCATTCTTTTCAAGTTTGGGATCCAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* * ** *
2128316 ATTCTCTTCATTAGGATATATGATATTGATGCTTTGGTGTCATAGGAAAAGCTTTTCTTTCCACC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* *
2128381 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
* * *
2128446 TTCTTTTCAAGATTTGGCACCTTAAACATATTCTTCTCATTAGGATAC-CTAATATTGGTGCTTT
326 TTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACAC-GATATTGGTGCTTT
* * * * ** *
2128510 GGTTTCACAGGAAAGGCTTTTTTTCTACCAAACTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
390 GGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
*
2128575 CCAAACGTTGGTTCTAGTATTG
455 CCAAACGTGGGTTCTAGTATTG
* * * * *
2128597 ATCTTCCTTCATTTTGTGATTCGGCACTATAAACACATTCTCCACATTAGGATAAATGATATCGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * *
2128662 TGATTTTGTTTTGCGTGGAAATCATTTCTTTGCCCTATTTTACTTAATATCATAA-TTCATCCCT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCA-AAGTTCATCCCT
* *
2128726 TAAA-AAGACTAGCATCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGATCCAAAAACA
130 TAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * *
2128790 CATTTTGTTCATTAGGATACATGACACT-AGTGCTTTGGTGTCGTAAGAAATGCTTTTCTTTCCA
195 CATTCTCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* **
2128854 CCGTTTTTGATAGAATCAAAAG-TTATCTCTTAAATAAGACAAACATGAATACTTGTACTATTCC
259 CCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCC
* *
2128918 CTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCT
323 CCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCT
* * * * * *
2128983 TTGGTTTCGCAAGAAAGAC-TTTTTCGCACCAAGTTTTGTAAAGTCTACGTTTATGCCTTAAATG
388 TTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * **
2129047 AGACAAACATGGATTCTAGTAACG
453 AGCCAAACGTGGGTTCTAGTATTG
* *
2129071 AACTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * *
2129136 TGATATTCTTTTACATGAAAATCATTTCTTTGCCCAATTTTACTTAAAATCAAAGTTCATCCCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * * * *
2129201 AAATAAGACAAGCACCGATTCT-ATTAACAATCTCCATTATTTTCAAGATTGGAAACTAAAAACA
131 AAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * *
2129265 CATTTTATTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTT-CA
195 CATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCA
* * ** *
2129329 CCATTTTTGATAGAATCAAAGTTTGTCTCCTCTATAAGACAAACATAAATACTCATACTA-TCCC
259 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCC
* * * * * * * *
2129393 CTTTCTTTTCAAGATTAGACACCATAATCATAGTCTTCTCCA-AAGGGTACAAGATATTGATGCT
324 CATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCT-CATTAGGATACACGATATTGGTGCT
* *
2129457 TTGGTTTCACAAGAAAGG-TTTTTTCCCCACCAA---TT-T-AAGTCTAAGTTCATGCCTTAAAT
388 TTGGTTTCGCAAGAAAGGCTTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
*
2129516 GTGCCAAACGTGGGTTCTAGTATTG
452 GAGCCAAACGTGGGTTCTAGTATTG
* * * * * *
2129541 ATCTTCCTTCATTATGTGATTAGGCTCTATAAACACGTTCTCCTCATTAGGATAAATGATATTTA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * ** * * *
2129606 TGATTTTCATTCGCATGGAAATCTTTTCTTCACCCTATTTTACTTAATATCATAGTTCATCTCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * *
2129671 AAAAAAGAAAAGCATCGATTCTCATAACCATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
*
2129736 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * *
2129801 ATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGTACTATTCCCCA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
* * * *
2129866 TTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATAAATGACATTGGTGCTTTG
326 TTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTG
* * *
2129931 GTTTCGCAAGAAAGGCTTTTTTCCCACCTATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGC
391 GTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGC
* * *
2129996 CAAACATCGATTCTAG-ATTTG
456 CAAACGTGGGTTCTAGTA-TTG
* * * * *
2130017 ATCTTCATTCATTTTATGATTAGGCACTATAAAAACATTCTCCTCTTTATGATTAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * *
2130082 TGACTTTT-TTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCGTAAAATCAAAGTTCATCCCT
66 TGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* *
2130146 TAAATAAGACAAGCAAT-GATTCT-AGTAACTATCTCCATTCTTTTCAAGATTGGGATTCAAAAA
130 TAAATAAGACAAGC-ATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAA
* * * * * *
2130209 CACATTCCCTTCATTAGAATACATGACATTGATGCTTTAGTATCACAAGAAATGCTTTTCTTTCC
193 CACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
2130274 ACCGTTTTTGATAGAAACAAAGTTTATCTCTTAAATATGACAAAAATGAATACTCGTACTA-TAC
258 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCC
* * *
2130338 CCATTC-TTTCAGAGATTAGACACTTTAAACATAGTCTTCTCATTAGGATACACGATATTAGT-C
323 CCATTCTTTTCA-AGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGC
* * * * *
2130401 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTATAAAGTCAAAGTTCGTGCTTCAAAT
387 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* *
2130466 GAGCCAAACGTGGATTCTAGTTTTG
452 GAGCCAAACGTGGGTTCTAGTATTG
* *
2130491 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAAGATTAAA-GATATTA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGA-TAAATGATATTG
** * ** * ** *
2130555 ATGATTTTCACTTGCATGGAAATCTTTTCTATGGTCTATTTTCCCCAAAATCAAAGTTCATTCCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* * * * *
2130620 TAAATTAGA-AAGCATCAATTAT-AGTAACAATCTCCATTCTTTTCAAGACTGGGAACCAAAAAC
130 TAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
* * *
2130683 ACATTC-CATTCATTAGGATACATGACATTGATTCTTTGGTGTCGTAAGAAAAGCATTT-TTTCC
194 ACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
2130746 ACCGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAATGAATAGTCATACCATTCC
258 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCC
* * * ** * *
2130811 CTAATT-TTTTCGAGATTAGCCACCTTAAACATAGTCTTCTCATTACAATACACAATATTGGTTC
323 C-CATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGC
* ** *
2130875 TTTGGTTTGGCAAGAAAGGCTTTTTTGTCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAAT
387 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
2130940 GAGCCAAACATAGATTCTAGTATTT
452 GAGCCAAACGTGGGTTCTAGTATTG
* * * **
2130965 TTCTTCTTTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAAGATTTATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * * * *
2131030 TGACTTTGTTTTGCATTGAAATCTTTTCTTTGCCTTATTTTCCCTAAAATCAAAGTTAATCCCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * * * *
2131095 AAATAAGACAAGCAT-TATTTCTCATAAAAATCTTCATTCTTTTCAAGGTTGGGATCAAAAAACA
131 AAATAAGACAAGCATCGA-TTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* *
2131159 CATTCTCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
195 CATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* *
2131224 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTATTCCCC
260 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCC
* * * * **
2131289 ATCCTTTTCAAGAGTT-GGAACCTTAAACATAGTCTTCTCAATAGGATACATGATATTGGCACTT
325 ATTCTTTTCAAGA-TTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTT
* *
2131353 TGGCTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
389 TGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* *
2131418 GCCAAACGTGGGTTCCAGTGTTG
454 GCCAAACGTGGGTTCTAGTATTG
*
2131441 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACGA-TCCCCTCATTAAGAT---T--TA-TG
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-ATTCTCCTCATTAAGATAAATGATATTG
* * *
2131499 AT-A-------TTG-AT-G--A-C-TTT-TTTGCCCTATTTTACATAATATCATAGTTCATCCCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* * *
2131549 TAAATAAAACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
130 TAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * * * *
2131614 CATTTTCTTCATTAGGATACATGACATTGATACTTTGGTGTCACAAGAAATGTTTTTTTTTTTGC
195 CATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG--CTTTTCTTTCC
** * *
2131679 A-TTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAA-AGTGAATATTCATACTATTC
258 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTCATACTATTC
* * *
2131742 CCCATTCTTTTCAAGATTAGGCA-TTTTAACAATAGTCTTCTCATTAGGATACACGATATTAGTG
322 CCCATTCTTTTCAAGATTAGGCACCTTAAAC-ATAGTCTTCTCATTAGGATACACGATATTGGTG
* *
2131806 CTTTGGTTTCGCAAGAAGGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAG-T-A-G-C-C-AA
386 CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
2131865 --A--C--A--TGGGTTCTAGTATTG
451 TGAGCCAAACGTGGGTTCTAGTATTG
* * *
2131883 ATCTTCATTCATTTTATGATTAGGAACTATAAAAACATTCTCCTCATTAAGATTACTGATAATGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAG---A-T-A-AATGA
* * * *
2131948 TATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA
60 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCA
* * * *
2132013 ACCCTTAAATAAGACAAGCATCGATTCT-AGTAACAGTCTCCATTCATTTCAAGATTAGGATCCA
125 TCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * * *
2132077 AAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTTT
189 AAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * *
2132142 TTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCGAACATGAATACTCATACTA
254 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* *
2132207 TTCCCCATCCTTTTCAAGAGTT-GGCACCTTAAACATAGTCTTCTCAATAGGATACACGATATTG
319 TTCCCCATTCTTTTCAAGA-TTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTG
** * *
2132271 GCACTTTGGCTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
383 GTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * *
2132336 AAATGAGCCAAATGTGGGTTCCAGTGTTG
448 AAATGAGCCAAACGTGGGTTCTAGTATTG
* *
2132365 ATCTTCATTCATTTTGTGATTAGGTACTATAAAAACATTCTCCTCATTAAGATTACTGATAATGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAG---A-T-A-AATGA
* * * *
2132430 TATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA
60 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCA
* * *
2132495 ACCCTTAAATAAGACAAGCATCGATTCT-AGTAACAGTCTCCATTCTTTTCAAGATTAGGATCCA
125 TCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * * *
2132559 AAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTTT
189 AAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTC
* * * *
2132624 TTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCGAACATAAATACTCATACT
253 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* *
2132689 ATTCCCCATCCTTTTCAAGAGTT-GGCACCTTAAACATAGTCTTCTCAATAGGATACACGATATT
318 ATTCCCCATTCTTTTCAAGA-TTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATT
** * *
2132753 GGCACTTTGGCTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
382 GGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * *
2132818 CAAATGAGCCAAATGTGGGTTCCAGTGTTG
447 CAAATGAGCCAAACGTGGGTTCTAGTATTG
* * *
2132848 ATCTTCATTCATTTTGTGATTAGGTACTATAAAAACATTCTCCTTATTAAGATTAAA-GATATTG
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGA-TAAATGATATTG
* * *
2132912 ATGATTTTCATTTGCATGGAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* * * * *
2132977 TAAATTAGACAAGTATCAATTCT-AGTAACAATCTCCATTCTTTTCAAGATT-GGAACCCAAAAC
130 TAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
* *
2133040 ACATTC-CATTCGTTAGGATACATGACATTGATGCTTTGGTGT--CAAGAAAAGCGTTT-TTT-C
194 ACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
2133100 ACCGTTTTGGATAGAATCAAAGTTTGACTCTTAAATAA-A-AAAAATGAAAAGTCATACCATTCC
258 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCC
* * * *
2133163 CTAATT-TTTTCAAGATTAGGCGCCTTAAACATAGTCTTCTCATTAGGATACACAATATTGGTTC
323 C-CATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGC
* ** * *
2133227 TTTGGTTTGGCAAGAAAGGCTTTTTTCTTACCAACTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
387 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * *
2133292 GAGCCAAACGTAGATTCTAGTATTT
452 GAGCCAAACGTGGGTTCTAGTATTG
* **
2133317 TTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTTATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * * * * * **
2133382 TGACTTTGTTTTGCATTGAAATCTTTTTTTTGCCATTTTTTCCTTAAAATCAAATTTCATTTCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * * * *
2133447 AAATAAGACAAGCATCGTTTCTCGTAAAAATCTCCATTCTTTTCAAGGTTGGGATCAAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* ** *
2133512 ATTCTCTTCATTAAGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCATC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * *
2133577 GGTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAAGAATACTCATACTATTCCCCA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
* * * * * **
2133642 TCCTTTTCGAGATTTGGCACCTTAAACATAGTCTTCTCAATAGGATACATGATATTGGCACTTTG
326 TTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTG
* * * *
2133707 GTTTTGCAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGC
391 GTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGC
* * *
2133772 CAAACTTGGGTTCCAGTGTTG
456 CAAACGTGGGTTCTAGTATTG
* * *
2133793 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACGAATC-CGTCATTAAGAT---T--TA-CG
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-ATTCTCCTCATTAAGATAAATGATATTG
* * ** *
2133851 AT-A-------TTG-AT-G--A-C-TTTCTTTGCCCTATTTTACATAATATCGTAGCTT-ATCCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAG-TTCATCCC
** * *
2133901 TTAAATAAGACAAGCATCGATTCTTGTAACAATCACCATTCTTTTCAAGATTGGGATCTAAAAAC
129 TTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
* * * * * * *
2133966 ACATTTTCTTCATTAGGATACATTACATTGATACTTTGGTGTCGCAAGAAATGTTTTTTTTTGCA
194 ACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* *
2134031 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGTACTATTCCC
259 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCC
* * *
2134096 CATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACAATATTAGTGCTT
324 CATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTT
* * * ** *
2134161 TGGTTTCGCAAGAAGGGCTTTTTTCTCACCATTTTTTGTAAAGTCTAAGTTTGTGCCTCAAAAGA
389 TGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* *
2134226 GCC--ACATGGGTTCTACTATTG
454 GCCAAACGTGGGTTCTAGTATTG
* * *
2134247 ATCTTCATTTATTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTAAGATTAATGATAATGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAG----AT-A-AATGA
* * * * *
2134312 TATTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCG
60 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCA
* * *
2134377 TCCCTTAAATAAGACAAGCATCGATCCT-AGTAACAATCTCCATTCTTTTCATGATTGGGAACCA
125 TCCCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCA
* * * *
2134441 AAAACACATTC-CATTCATTAGCATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCATTT-
189 AAAACACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * *
2134504 TTTCCACCGTTTTGGATAGAATCAAAGTCTGTCTCTTAAATAAGAAAAAAAATGAATAGTCATAC
253 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG-ACAAACATGAATACTCATAC
* * **
2134569 CATTCCCTAATT-TTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACAAAATAT
317 TATTCCC-CATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATAT
* * * *
2134633 TGGTTCTTTGCTTTGGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCC
381 TGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* * ** *
2134698 TCAAATGAGCCAAACGTAGATAATAGTATTT
446 TCAAATGAGCCAAACGTGGGTTCTAGTATTG
* * * ** *
2134729 TTCTTCATTCA-CTTGTGATTAGGCACCATAAACACATTCTCCTCATTAAGATTTATGATATTAA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * *
2134793 TGACTTTGTTTTGCATCGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * * * *
2134858 AAATAAGACAACCGTCGTTTCTCATAAAAATCTCCATTCTTTTCAAGGTTGGGATCC-AAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* * *
2134922 --TCTCTTCATTAAGATACATGACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * *
2134985 ATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAATACTCGTACTATTCCCCA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
* * * **
2135050 TCCTTTTCAAGATTTGGCACCTTAAACATCGTCTTCTCATTAGGATACACGATATTGGCACTTTG
326 TTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTG
* * *
2135115 GTTTCGCAAGCAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTGA-TTCGTGCCTCAAATGAGC
391 GTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGC
* *
2135179 CAAACGTGGGTTCCAGTGTTG
456 CAAACGTGGGTTCTAGTATTG
* * * **
2135200 ATCTTCATTTATTTTGTGATTAGGCACTATAAACACAATCTCTTCATTAAGATTTATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* ** ** * * *
2135265 TGACTTTCTTTTGTGTAAAAATCTTTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* ** **
2135330 AAATAAGACAAGCATTGATTCTTGTAACAATCTCCATTCTTTTTTCCCGATTGGGATCCAAAAAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTC--TTTTCAAGATTGGGATCCAAAAAC
* **
2135395 ACATTCTCTTCATTAGGATACATGACATTGATGCTTTAGTGTTACAAGAAAAGCTTTTCTTTCCA
194 ACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
2135460 CTGTTTTTAATAGAAT-AAATGTTTGTTTCTTAAATAAGACAAACATGAATACTCGTACTATTCC
259 CCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCC
* * *
2135524 CAATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTACGATACACGATATTGGTGCT
323 CCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGC-
** * * * * *
2135589 TTTTTTTTCGCAAGAAAGGCTCTTTTCCCACCAAGTTTTGCAAAGCCTAAGTTCATGCCTTAAAT
387 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
2135654 GAGACAAACATGGATTCTAGTAATG
452 GAGCCAAACGTGGGTTCTAGTATTG
* * * *
2135679 AACTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAGATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* *
2135744 TGATATTCTTTTGCATGGAAATCGTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * * * *
2135809 AAATAAGACAAGCATCAATTCTCGTAATAATCTCCTTTCTTTTCAAGAATGGGATCCAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
*
2135874 ATTCTCTTCATTAGGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCACC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
2135939 ATTTTTAATAGAATCAATGTTTGTCTCTT---T--------TATGAATACTCATACTATTCCCAA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
*
2135993 TTCTTTTTAAGATTAGGCA-CTTAAA-ATCTAGTCTTCTCATTAGGATACACGATATTGGTGCTT
326 TTCTTTTCAAGATTAGGCACCTTAAACA--TAGTCTTCTCATTAGGATACACGATATTGGTGCTT
* *
2136056 TGGTTTCGTAA-AAAGGGCTTTTTTCCCACCAAGTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
389 TGGTTTCGCAAGAAA-GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
2136120 AGACAAACATGGATTCTAGTAATG
453 AGCCAAACGTGGGTTCTAGTATTG
* * *
2136144 AACTTCATTCATTTTGTGATTAGGCACTATAATCACATTCTCCTCATTAGGATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * ** *
2136209 TGATATTATTTTGCATTGAAATCTTTTCTTTGCCCTATTTTACTTAATATCGTAGTTCATCCCAT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * *
2136274 AAATAAGACAAGCATCAATTCTCGTAACAATCT-C---C-TTTCAAGAATGGGATCCAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* *
2136334 ATTCTCTTCAATAGGATACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
*** * * * *
2136399 GTTTGAAATAGAATCAATGTTTATCTCTTAAATAAGACAAACATGAATACTCGTACTATTCCCAA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
* * * * * *
2136464 TTCTTTCCAAGATTAGGCTCTTTAAATA-ATGTTTTCTCATTAGGATATA-GATATTGGTGCTTT
326 TTCTTTTCAAGATTAGGCACCTTAAACATA-GTCTTCTCATTAGGATACACGATATTGGTGCTTT
* * *
2136527 GCTTTCGCAAGAAAGGCTTTTTTCCCACCAAGTTTTGTAAAGCCTAAGTTCATGCCTCAAATGAG
390 GGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
* * * * *
2136592 ACAGACATGGATTCTAGTAATG
455 CCAAACGTGGGTTCTAGTATTG
* * * *
2136614 AACTTCATTCATTTTGTGATTAGGCACTATAAACGCATTCTCTTCATTAGGATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * *
2136679 TCATATTT-TTTTGCATGAAAATCGTTTT-TTTGCCCTATTTTACTTAAATTCAAAGTTCAACCC
66 TGAT-TTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCC
* *
2136742 TTAAATAAGATC-AGCATCGATTCT-AGTAACAATCTCCATTAC-TTTCAAGATTGGGAACTAAA
129 TTAAATAAGA-CAAGCATCGATTCTCA-TAACAATCTCCATT-CTTTTCAAGATTGGGATCCAAA
*
2136804 AACACATTC-CATTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACT
191 AACACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CT
* * * *
2136868 TT-GACCATTTTTGATAGAATTAAAGTTTGTCTCTTACATAAGACAAACATGAATACTCATACTA
254 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * * * *
2136932 -TCCCCTTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCAGTAGGATACAAGATATTGA
319 TTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGG
* * *
2136996 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGACTCA
384 TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
2137061 AATGAGCCAATCGTGGGTTCCAGTGTTG
449 AATGAGCCAAACGTGGGTTCTAGTATTG
* **
2137089 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATTTATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * * * *
2137154 TTACTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCTTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* *
2137219 AAATAAGACAAGCATCGATTCTCATAACAATCTCCTTTATTTTCAAGATTGGGATCCAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
*
2137284 ATTCTCTTCATTAGGATACATGACATTGATGCTATGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
2137349 GTTTTTAATAGAATCAATGTTTATCTCTCAAATAAGACAAACATGAATACTCATACTATTCCCTA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
* * * *
2137414 TTCTTTTTAAGATTAGGCACTTTAAACATACTCTTCTCATTAGGATACATGATATTGGTGCTTTG
326 TTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTG
* * * *
2137479 GTCTCACAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGC
391 GTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGC
* * * *
2137544 CAAACATAGATTCTAGTTTTG
456 CAAACGTGGGTTCTAGTATTG
** * * * *
2137565 GGCTTCATTCTTTTTTTGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* ** *
2137630 TCACATTCTTTTGCATGGAAATCGTTTCTTTGCCCTATTTTACTTAAAATCAAAGGTT-ATCCCT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAA-GTTCATCCCT
* ** * *** * * *
2137694 TATATAAGTTAAGCATTGATTCT-AGT-GTTATCTCCATTATTTTCAAGATTGGGAACTAAAAAC
130 TAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
*
2137757 ACATTC-CATTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTC
194 ACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTC
* * * *
2137820 GACCATTTTTTATAG-ATTAAAGTTTGTCTC-T---T-------ACAT--A-ACTCATACTA-TC
257 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTC
* * * * * * *
2137869 CCCTTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGATGC
322 CCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGC
*
2137934 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
387 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* *
2137999 GAGCCAAACGTGGGTTCCAGTGTTG
452 GAGCCAAACGTGGGTTCTAGTATTG
** *
2138024 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTTATGATGTTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
* * * * * *
2138089 TGACTTTCTTTAGCATGGAAATCTTTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCCAT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* *
2138154 AAATAAGATAAGCATCGATTCTCATAACAATCTCCTTTCTTTTCAAGATTGGGATCCAAAAACAC
131 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* * *
2138219 ATTCTCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTCTTTTCACC
196 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
2138284 ATTTTTAATAGAATCAATGTTTGTCTCTCAAATAAGACAAACATGAATACACATACTATTCCCCA
261 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
*
2138349 TTCTCTTCAAGATTAGGCAC
326 TTCTTTTCAAGATTAGGCAC
2138369 TTTTGATGAA
Statistics
Matches: 8471, Mismatches: 1072, Indels: 457
0.85 0.11 0.05
Matches are distributed among these distances:
441 1 0.00
442 58 0.01
444 1 0.00
445 1 0.00
446 2 0.00
448 1 0.00
450 2 0.00
451 2 0.00
452 1 0.00
453 6 0.00
454 61 0.01
455 142 0.02
456 465 0.05
457 13 0.00
458 7 0.00
459 266 0.03
460 223 0.03
461 20 0.00
462 8 0.00
463 8 0.00
464 6 0.00
465 240 0.03
466 76 0.01
467 12 0.00
468 157 0.02
469 449 0.05
470 606 0.07
471 230 0.03
472 394 0.05
473 198 0.02
474 799 0.09
475 1322 0.16
476 1147 0.14
477 403 0.05
478 48 0.01
479 222 0.03
480 275 0.03
481 38 0.00
482 283 0.03
483 278 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCA
TTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTG
GTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGC
CAAACGTGGGTTCTAGTATTG
Found at i:2129350 original size:159 final size:158
Alignment explanation
Indices: 2127173--2131268 Score: 907
Period size: 159 Copynumber: 25.9 Consensus size: 158
2127163 TTCTCAGAAT
* * * * * * * *
2127173 AATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCCTTATAAAGATACATGACATTG
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATT-TTCTCATTAGGATACATGACATTG
* ** * * ** **
2127238 ATAG-TTTGGTGTTGCAAGAAATTCTTTTCTTTCCCCCGTTTTTGATAGAATCAAAGTTTGTCTT
65 AT-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCC
* **
2127302 TTAAATAAGACAAGCAT-GAATTCTCGT-AC
129 TTAAATAAGACAAACATCG-ATTCTATTAAC
* * ** * ** * * * *
2127331 TAT-TCCCTATT-TGTTTCAAGATTAGGCACTGTAAACATAGACTTCTAATTAGGAAACACGATA
1 AATCT-CC-ATTAT-TTTCAAGATTAGGAACTAAAAACACA-TTTTCTCATTAGGATACATGACA
* ** * * * *
2127394 TTGGTGCTTTCATTTCGCAAGAAAGGCTTTT-TTT-CACCAATTTTTG-TA-AAGTCTAAGTTCG
62 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTCA
** * * * * **
2127455 TGTCTTAAATCAGCCAAACGTGGATTCTAGTT-TT
125 TCCCTTAAATAAGACAAACATCGATTCTA-TTAAC
* ** * * * * *
2127489 GATCTTCTTTTATTTT-ATGATTAGGCACTATAAAA-ACATTCTCCTCATTAAGATTA-ATGATA
1 AATC-TCCATTATTTTCAAGATTAGGAACTA-AAAACACATT-TTCTCATTAGGA-TACATGACA
* ** * * * * * *** *
2127551 TTGATGATTTTCTTTTGCATAG-AAATCTTTTTTTTGCC-CTATTTTCCTTAAAATCAAAGTTCA
62 TTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTCA
** **
2127614 TCCCTTAAATAAGACAAGGATCGATTCTCGTAAC
125 TCCCTTAAATAAGACAAACATCGATTCTATTAAC
* * * * * *
2127648 AATCTCCATTCTTTTCAACATTGGGATCTAAAAACATATTCTAT-TCATTAGGATACCTGACATT
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATT-T-TCTCATTAGGATACATGACATT
* * * * * * ** *
2127712 AATGCTTTGGGGTCGCAAGGAAAG-TTTT-TTTCCACCGTTTTTGATAGTACCAAAGTTTGTCTC
64 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCC
*
2127775 TTAAATAAGACAAACAT-GA--ATACTTATAC
129 TTAAATAAGACAAACATCGATTCTA-TTA-AC
* * * * ** ** * * *
2127804 TATTCTCTATTCTTTTCAAGATTAGGCACTTTAAACATGGTCTTCTCATTAGGATACACGATATT
1 -AATCTCCATTATTTTCAAGATTAGGAACTAAAAACA-CATTTTCTCATTAGGATACATGACATT
* * * * * *
2127869 GGTGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTT-ATA-AAGTCAAAGTTCGTG
64 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTCATC
* * * **
2127931 CCTT-AATAAGCCAAACGTGGATTCTAGTT-TT
127 CCTTAAATAAGACAAACATCGATTCTA-TTAAC
* * ** * * * * *
2127962 GATCTTCATTCATTTT-GTGATTAGGCACTATAAAA-ACATTCTCCTCATTAAGATTA-AAGATA
1 AATCTCCATT-ATTTTCAAGATTAGGAACTA-AAAACACATT-TTCTCATTAGGA-TACATGACA
* * ** * * * *** *
2128024 TTAATGATTTTCAT-TTGCATGAAAATG-TTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTC
62 TTGATG-CTTTGGTGTCGCAAGAAAA-GCTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTC
* * * * *
2128086 ATCTCTTAAATTAGACAAGCATCAATTCTAGTAAC
124 ATCCCTTAAATAAGACAAACATCGATTCTATTAAC
** ** * * *
2128121 AATCTCCATTCATTTT-GTGATTAGGCCCTATAAACACATTCTCGTCATTAAGATTA-ATGATC-
1 AATCTCCATT-ATTTTCAAGATTAGGAACTAAAAACACATTTTC-TCATTAGGA-TACATGA-CA
** * * * * * * * *** *
2128183 TTGATTATTT-CTTTTGCATGGAAATCTTTTCTTTACC-CTATTTCACATA-ATATCATAGTTCA
62 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGA-ATCAAAGTTCA
** * * ** *
2128245 TCGTTTAAATAAGACAAGCTTCGATTCTCGTGAC
125 TCCCTTAAATAAGACAAACATCGATTCTATTAAC
* * * * * * * * *
2128279 AATCACCATTCTTTTCAAGTTTGGGATCCAAAAACACATTCTCTTCATTAGGATATATGATATTG
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATTTTC-TCATTAGGATACATGACATTG
** * * ** *
2128344 ATGCTTTGGTGTCATAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
65 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCCT
* * *
2128409 TAAATAAGGCAGACAT-GAATACTCA-T-AC
130 TAAATAAGACAAACATCG-ATTCT-ATTAAC
* * * * * * * * * *
2128437 TATTCCCCATTCTTTTCAAGATTTGGCACCT-TAAACATATTCTTCTCATTAGGATACCTAATAT
1 -AATCTCCATTATTTTCAAGATTAGG-AACTAAAAACACATT-TTCTCATTAGGATACATGACAT
* * * * * * ** * *
2128501 TGGTGCTTTGGTTTCACAGGAAAGGCTTTT-TTTCTACCAAACTTTG-TA-AAGTCTAAGTTCGT
63 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTCAT
* * * * * * * * **
2128563 GCCTCAAATGAGCCAAACGTTGGTTCTAGTATT
126 CCCTTAAATAAGACAAACATCGATTCTATTAAC
* ** * * * * * * *
2128596 GATCTTCC-TTCATTTT-GTGATTCGGCACTATAAACACATTCTCCACATTAGGATAAATGATAT
1 AATC-TCCATT-ATTTTCAAGATTAGGAACTAAAAACACATT-TTCTCATTAGGATACATGACAT
* * * * * ** * * * * ***
2128659 CGATGATTTTGTTTTGCGTGGAAATCATTTCTTTGCC-CTATTTTACTTA-ATATCATAA-TTCA
63 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGA-ATCA-AAGTTCA
* *
2128721 TCCCTTAAA-AAGACTAGCATCGATTCTCA-TAAC
125 TCCCTTAAATAAGACAAACATCGATTCT-ATTAAC
* * * * * * *
2128754 AATCTCTATTCTTTTCAAGATTGGGATCCAAAAACACATTTTGTTCATTAGGATACATGACACT-
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATTTT-CTCATTAGGATACATGACATTG
* * * *
2128818 AGTGCTTTGGTGTCGTAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAAGTT-ATCT
65 A-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAAGTTCATCC
*
2128882 CTTAAATAAGACAAACAT-GAATACT-TGT-AC
128 CTTAAATAAGACAAACATCG-ATTCTAT-TAAC
* * * ** * * * *
2128912 TAT-TCCCTATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATACACGATAT
1 AATCT-CC-ATTATTTTCAAGATTAGGAACTAAAAACACA-TTTTCTCATTAGGATACATGACAT
* * * * * *
2128976 TGGTGCTTTGGTTTCGCAAG-AAAGAC--TT-TTTCGCACCAAGTTTTG-TA-AAGTCTACGTTT
63 TGATGCTTTGGTGTCGCAAGAAAAG-CTTTTCTTTC-CACC-ATTTTTGATAGAA-TCAAAGTTC
* * * *
2129035 ATGCCTTAAATGAGACAAACATGGATTCTAGTAAC
124 ATCCCTTAAATAAGACAAACATCGATTCTATTAAC
* ** * * * * *
2129070 GAA-CTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
1 -AATCTCCATT-ATTTTCAAGATTAGGAACTAAAAACACATT-TTCTCATTAGGATACATGACAT
* * * ** * * * * * *
2129133 TGATGATATT-CTTTTACATGAAAATCATTTCTTTGC-CCAATTTT-ACTTAAAATCAAAGTTCA
63 TGATGCT-TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA--TAGAATCAAAGTTCA
* *
2129195 TCCCTTAAATAAGACAAGCACCGATTCTATTAAC
125 TCCCTTAAATAAGACAAACATCGATTCTATTAAC
* *
2129229 AATCTCCATTATTTTCAAGATT-GGAAACTAAAAACACATTTTATTCGTTAGGATACATGACATT
1 AATCTCCATTATTTTCAAGATTAGG-AACTAAAAACACATTTT-CTCATTAGGATACATGACATT
**
2129293 GATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTT-CACCATTTTTGATAGAATCAAAGTTTGTCT
64 GATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCACCATTTTTGATAGAATCAAAGTTCATC-
** *
2129357 CCTCT--ATAAGACAAACATAAATACTCA-T-AC
127 CCT-TAAATAAGACAAACATCGATTCT-ATTAAC
* * * * * * * * * * * * *
2129387 TATCCCCTTTCTTTTCAAGATTA-GACACCATAATCATAGTCTTCTCCA-AAGGGTACAAGATAT
1 AATCTCCATTATTTTCAAGATTAGGA-ACTAAAAACACA-TTTTCT-CATTAGGATACATGACAT
* * * * * * *
2129450 TGATGCTTTGGTTTCACAAG-AAAGGTTTT-TTCCCCACCA-ATTT-A-AG--TCTAAGTTCATG
63 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCCACCATTTTTGATAGAATCAAAGTTCATC
** * * * * * **
2129508 CCTTAAATGTGCCAAACGTGGGTTCTAGTATT
127 CCTTAAATAAGACAAACATCGATTCTATTAAC
* * ** ** * * * * *
2129540 GATCTTCC-TTCATTAT-GTGATTAGGCTCTATAAACACGTTCTCCTCATTAGGATAAATGATAT
1 AATC-TCCATT-ATTTTCAAGATTAGGAACTAAAAACACATT-TTCTCATTAGGATACATGACAT
* * ** * * * * *
2129603 TTATGATTTTCAT-TCGCATGGAAATCTTTTC-TT-CACCCTATTTT-ACTTA-ATATCATAGTT
63 TGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTTGA--TAGA-ATCAAAGTT
* *
2129663 CATCTCTTAAAAAAGA-AAAGCATCGATTCTCA-TAAC
123 CATCCCTTAAATAAGACAAA-CATCGATTCT-ATTAAC
* * * * * *
2129699 CATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTG
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATTTTC-TCATTAGGATACATGACATTG
* * ** *
2129764 ATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCT
65 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCCT
* **
2129829 TAAATAAGACAAACAT-GAATACTCGT-AC
130 TAAATAAGACAAACATCG-ATTCTATTAAC
* * * * ** * * *
2129857 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCTCATTAGGATAAATGACATT
1 -AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACA-TTTTCTCATTAGGATACATGACATT
* * * * * * * *
2129922 GGTGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCTATTTTT-TTA-AAGTCTAAGTTCGTG
64 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTCATC
* * * *
2129984 CCTCAAATGAGCCAAACATCGATTCTAGATT--T
127 CCTTAAATAAGACAAACATCGATTCT--ATTAAC
* * * * * * * *
2130016 GATCTTCATTCATTTT-ATGATTAGGCACTATAAAA-ACATTCTCCTCTTTATGATTA-ATGATA
1 AATCTCCATT-ATTTTCAAGATTAGGAACTA-AAAACACATT-TTCTCATTAGGA-TACATGACA
* * * * * ** * *
2130078 TTGATGACTTT-TTTTTGCATGAAAATCTTTTCTTTGCC-TTATTTTCCG-TAAAATCAAAGTTC
62 TTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT-TGATAGAATCAAAGTTC
* *
2130140 ATCCCTTAAATAAGACAAGCAAT-GATTCTAGTAAC
124 ATCCCTTAAATAAGACAAAC-ATCGATTCTATTAAC
* * * * ** *
2130175 TATCTCCATTCTTTTCAAGATT-GGGATTCAAAAACACATTCCCTTCATTAGAATACATGACATT
1 AATCTCCATTATTTTCAAGATTAGGAACT-AAAAACACATTTTC-TCATTAGGATACATGACATT
* * * * * * * *
2130239 GATGCTTTAGTATCACAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAAACAAAGTTTATCTC
64 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCC
* * * **
2130304 TTAAATATGACAAAAAT-GAATACTCGT-AC
129 TTAAATAAGACAAACATCG-ATTCTATTAAC
* * ** * * * *
2130333 TATAC-CCATT-CTTTCAGAGATTA-GACACTTTAAACATAGTCTTCTCATTAGGATACACGATA
1 AAT-CTCCATTATTTTCA-AGATTAGGA-ACTAAAAACACA-TTTTCTCATTAGGATACATGACA
* * * *
2130395 TT-A-GTCTTTGGTTTTGCAAGAAAGGCTTTT-TTCCCACCAATTTTT-ATA-AAGTCAAAGTTC
62 TTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTC
* * * * * * **
2130455 GT-GCTTCAAATGAGCCAAACGTGGATTCTAGTT-TT
124 ATCCCTT-AAATAAGACAAACATCGATTCTA-TTAAC
* * ** * * * * *
2130490 GATCTTCATTCATTTT-GTGATTAGGCACTATAAAA-ACATTCTCCTCATTAAGATTA-AAGATA
1 AATCTCCATT-ATTTTCAAGATTAGGAACTA-AAAACACATT-TTCTCATTAGGA-TACATGACA
* * **** * * * * * *** * **** * *
2130552 TTAATGATTTTCACTTGCATGGAAATCTTTTCTATGGTCTATTTTCCCCAAAATCAAAGTTCATT
62 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATC
* * * * *
2130617 CCTTAAATTAGA-AAGCATCAATTATAGTAAC
127 CCTTAAATAAGACAAACATCGATTCTATTAAC
* * * * *
2130648 AATCTCCATTCTTTTCAAGACTGGGAACCAAAAACACA-TTCCATTCATTAGGATACATGACATT
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATTTTC--TCATTAGGATACATGACATT
* * * * * ** *
2130712 GATTCTTTGGTGTCGTAAGAAAAGCATTT-TTTCCACCGTTTTGGATAGAATCAAAGTTTGTCTC
64 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCC
* *
2130776 TTAAATAAGACAAAAAT-GAATAGTC-A-TACC
129 TTAAATAAGACAAACATCG-AT--TCTATTAAC
* * * * * * * ** ** *
2130806 ATTC-CCTAATT-TTTTCGAGATTAGCCACCT-TAAACATAGTCTTCTCATTACAATACACAATA
1 AATCTCC--ATTATTTTCAAGATTAG-GAACTAAAAACACA-TTTTCTCATTAGGATACATGACA
* * * * * * *
2130868 TTGGTTCTTTGGTTTGGCAAGAAAGGCTTTT-TTGT-CACCAATTTTT-CTA-AAGTCTAAGTTC
62 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCCACC-ATTTTTGATAGAA-TCAAAGTTC
* * * * * * **
2130929 ATGCCTCAAATGAGCCAAACATAGATTCTAGTATT
124 ATCCCTTAAATAAGACAAACATCGATTCTATTAAC
** * * ** * * * * ** *
2130964 TTTCTTCTTTCATTTTGTA-ATTAGGCACTATAAACACATTCTCCTCATTAAGATTTATGATATT
1 AATCTCCATT-ATTTTCAAGATTAGGAACTAAAAACACATT-TTCTCATTAGGATACATGACATT
* * * * ** *** * *
2131028 GATGACTTT-GTTTTGCATTG-AAATCTTTTCTTTGCC-TTATTTTCCCTAAAATCAAAGTTAAT
64 GATG-CTTTGGTGTCGCA-AGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTCAT
* * *
2131090 CCCTTAAATAAGACAAGCAT-TATTTCTCA-TAAA
126 CCCTTAAATAAGACAAACATCGA-TTCT-ATTAAC
* * * * * * * *
2131123 AATCTTCATTCTTTTCAAGGTTGGGATCAAAAAACACATTCTCTTCATTAGGATACATGACATGG
1 AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATTTTC-TCATTAGGATACATGACATTG
* ** *
2131188 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCT
65 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCCT
*
2131253 TAAATAAGGCAAACAT
130 TAAATAAGACAAACAT
2131269 GAATACTCAT
Statistics
Matches: 2801, Mismatches: 875, Indels: 523
0.67 0.21 0.12
Matches are distributed among these distances:
150 1 0.00
151 4 0.00
152 28 0.01
153 40 0.01
154 25 0.01
155 10 0.00
156 64 0.02
157 502 0.18
158 962 0.34
159 1084 0.39
160 73 0.03
161 8 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (158 bp):
AATCTCCATTATTTTCAAGATTAGGAACTAAAAACACATTTTCTCATTAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCCCTT
AAATAAGACAAACATCGATTCTATTAAC
Found at i:2132183 original size:159 final size:158
Alignment explanation
Indices: 2132016--2132667 Score: 393
Period size: 159 Copynumber: 4.1 Consensus size: 158
2132006 AAGTTCAACC
2132016 CTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCATTTCAAGATTAGGATCCAAAAA
1 CTTAAATAAGACAAGCATCGATTCTAGT-ACAGTCTCCATTCATTTCAAGATTAGGATCCAAAAA
2132081 CACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTTTTTCC
65 CACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTTTTTCC
*
2132146 ATCGTTTTTGATAGAATCAAAGTTTGTCT
130 ATCATTTTTGATAGAATCAAAGTTTGTCT
* * * * * *
2132175 CTTAAATAAGGCGAA-CAT-GAATACTCA-TACTATTCCCCATCCTTTTCAAGAGTT-GGCA-CC
1 CTTAAATAAGAC-AAGCATCG-ATTCT-AGTAC-AGTCTCCATTCATTTCAAGA-TTAGG-ATCC
** * * * * * * * *** * *
2132235 TTAAACATAGT-CTTCTCAATAGGATACACGATATTGGCACTTTGGCT-TCGCAAGAAA-GGTTT
60 AAAAACACATTCCCT-TCATTAGGAAACATGACATTGATGCTTTGG-TGTCACAAGAAATGCTTT
* * *
2132297 TTTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCATG-C-
123 TTTTTCCATC-ATTTTTGATAGAA-TCAAAGTT--TGTCT
* * * *** * * * *** * *** *
2132333 CTCAAATGAGCCAAATGTGGGTTCCAGTGTTGATCTTCATTCATTTTGTGATTAGG-TACTATAA
1 CTTAAATAAGACAAGCATCGATTCTAGTACAG-TCTCCATTCATTTCAAGATTAGGAT-CCA-AA
* * * * ** * *
2132397 AA-ACATTCTCC-TCATTAAGATTACTGATAATGATATTGATGATTTTCTTTTACATAGAAAT-C
63 AACACATTC-CCTTCATTAGGA--A---A-CATGACATTGATGCTTTGGTGTCACA-AGAAATGC
* * *** * *** *
2132459 TTTTCTTTGCC-TTATTTTCCTTAAAATCAAAGTTCAACC
120 TTTT-TTTTCCATCATTTTTGATAGAATCAAAGTTTGTCT
*
2132498 CTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAA
1 CTTAAATAAGACAAGCATCGATTCTAGT-ACAGTCTCCATTCATTTCAAGATTAGGATCCAAAAA
2132563 CACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTTTTTTC
65 CACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGC-TTTTTTTTC
*
2132628 CATCGTTTTTGATAGAATCAAAGTTTGTCT
129 CATCATTTTTGATAGAATCAAAGTTTGTCT
2132658 CTTAAATAAG
1 CTTAAATAAG
2132668 GCGAACATAA
Statistics
Matches: 342, Mismatches: 108, Indels: 85
0.64 0.20 0.16
Matches are distributed among these distances:
157 7 0.02
158 69 0.20
159 114 0.33
160 43 0.13
163 3 0.01
164 26 0.08
165 71 0.21
166 9 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
CTTAAATAAGACAAGCATCGATTCTAGTACAGTCTCCATTCATTTCAAGATTAGGATCCAAAAAC
ACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAATGCTTTTTTTTCCA
TCATTTTTGATAGAATCAAAGTTTGTCT
Found at i:2135931 original size:159 final size:157
Alignment explanation
Indices: 2133862--2138369 Score: 1346
Period size: 159 Copynumber: 28.6 Consensus size: 157
2133852 TATTGATGAC
* * ** * * * *
2133862 TTTCTTTGCCCTATTTTACATAATATCGTAGCTT-ATCCTTTAAATAAGACAAGCATCGATTCTT
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAG-TTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * * *
2133926 GTAACAATCACCATTCTTTTCAAGATTGGGATCTAAAAACACATTTTCTTCATTAGGATACATTA
64 GTAATAATCTCCATTCTTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATGA
* * * *
2133991 CATTGATACTTTGGTGTCGCAAGAAATGTT
128 TATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * ** * * *
2134021 TTTTTTTGCACC-ATTTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
1 TTTCTTTGC-CCTATTTTAT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCT
* * * * * * *
2134084 CGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT-TCTCATTAGGATACAC
63 CGTAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCTCT-TCATTAGGATACAT
* * **
2134148 AATATT-AGTGCTTTGGTTTCGCAAGAAGGGCT
126 GATATTGA-TGCTTTGGTGTCGCAAGAAAAGCT
* * * ** * * * *
2134180 TTT-TTCT-CACC-ATTTTTTGTAAAGTCTAAGTTTGTGCC-TCAA-AAGAGC-CACATGGGTTC
1 TTTCTT-TGC-CCTATTTTAT-TAAAATCAAAGTTCATCCCTTAAATAAGA-CAAACATGGATTC
* * * *** * * *
2134239 TAC-TATTGATCTTCATT-TATTTTGTGATTAGGCACTACAAAAACATTCTCCTCATTAAGATTA
62 T-CGTAATAATCTCCATTCT-TTTCAAGATT-GGCACTATAAACACATTCTCTTCATT-AG----
* ** * ** * *
2134302 ATGATA-ATGATATTGATGATTTTCTTTTACATGAAAATCT
119 --GATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * *
2134342 TTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCGTCCCTTAAATAAGACAAGCATCGATCCTAG
1 TTTCTTTGCCCTATTTT-ATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* * * * * *
2134407 TAACAATCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTC-CATTCATTAGCATACATGA
65 TAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCTC-TTCATTAGGATACATGA
* * * *
2134471 CATTGATGCTTTGGGGTTGCAAGAAAAGCA
128 TATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * * * *
2134501 TTT-TTTCCACCGT-TTTGGA-TAGAATCAAAG-TCTGTCTCTTAAATAAGAAAAAAAATGAATA
1 TTTCTTTGC-CC-TATTT-TATTAAAATCAAAGTTC-ATCCCTTAAATAAG-ACAAACATGGATT
* * ** * * *
2134562 GTCATACCATTC-CCTAATT-TTTTCAAGATTAGGCACCT-TAAACATAGTCT-TCTCATTAGGA
61 CTCGTAATAATCTCC--ATTCTTTTCAAGATT-GGCA-CTATAAACACATTCTCT-TCATTAGGA
** * * * * * *
2134623 TACAAAATATTGGTTCTTTGCTTTGGCAAGAAAGGCT
121 TACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * * * * **
2134660 TTT-TTCT-CACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACGTAGATAAT
1 TTTCTT-TGC-CCTATTTTAT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCT
* * ** * ** ** * * * **
2134722 AGTATTTTTCTTCATTCACTT-GTGATTAGGCACCATAAACACATTCTCCTCATTAAGATTTATG
63 CGTAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCTCTTCATTAGGATACATG
* * * * *
2134786 ATATTAATGACTTT-GTTTTGCATCG-AAATCT
127 ATATTGATG-CTTTGGTGTCGCA-AGAAAAGCT
* * * * * * *
2134817 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCGTCGTTTCTCA
1 TTTCTTTGCCCTATTTT-ATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* * * * * *
2134882 TAAAAATCTCCATTCTTTTCAAGGTTGGGATCCA-AAACAC--TCTCTTCATTAAGATACATGAC
65 TAATAATCTCCATTCTTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATGAT
*
2134944 ATTGATCCTTTGGTGTCGCAAGAAAAGCT
129 ATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * *
2134973 TTTCTTT-CCATCATTTT-TGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAATACT
1 TTTCTTTGCCCT-ATTTTAT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCT
* * * * *
2135036 CGTACTATTCCCCATCCTTTTCAAGATTTGGCACCT-TAAACATC-GTCT-TCTCATTAGGATAC
63 CGTAATAATCTCCATTCTTTTCAAGA-TTGGCA-CTATAAACA-CATTCTCT-TCATTAGGATAC
* *** * * *
2135098 ACGATATTGGCACTTTGGTTTCGCAAGCAAGGCT
124 ATGATATTGATGCTTTGGTGTCGCAAGAAAAGCT
** * * ** * * * * * * *
2135132 TTT-TTCCCACCAATTTT-TGTAAAGTCTGA-TTCGTGCCTCAAATGAGCCAAACGTGGGTTC-C
1 TTTCTTTGC-CCTATTTTAT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
** * * *** * * **
2135193 AGTGTTGATCTTCATT-TATTTTGTGATTAGGCACTATAAACACAATCTCTTCATTAAGATTTAT
64 -GTAATAATCTCCATTCT-TTTCAAGATT-GGCACTATAAACACATTCTCTTCATTAGGATACAT
** * *
2135257 GATATTGATGACTTTCTTTTGT-G-TA-AAAATCT
126 GATATTGATG-C-TT-TGGTGTCGCAAGAAAAGCT
* * * * * *
2135289 TTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCCTTAAATAAGACAAGCATTGATTCTTG
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* ** * * *
2135354 TAACAATCTCCATTCTTTTTTCCCGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATG
65 TAATAATCTCCATTC--TTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATG
* * **
2135419 ACATTGATGCTTTAGTGTTACAAGAAAAGCT
127 ATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * ** ** * *
2135450 TTTCTTT-CCACTGTTTTTAATAGAAT-AAATGTTTGTTTCTTAAATAAGACAAACATGAATACT
1 TTTCTTTGCC-CT-ATTTTATTAAAATCAAA-GTTCATCCCTTAAATAAGACAAACATGGATTCT
* * * * * *
2135513 CGTACTATTC-CCAATTCTTTTCAAGATTAGGCACTTTAAACATAGTCT-TCTCATTACGATACA
63 CGTAATAATCTCC-ATTCTTTTCAAGATT-GGCACTATAAACACATTCTCT-TCATTAGGATACA
* * ** * *
2135576 CGATATTGGTGCTTTTTTTTTCGCAAGAAAGGCT
125 TGATATTGATGC-TTTGGTGTCGCAAGAAAAGCT
* ** * ** ** * * * *
2135610 CTT-TTCCCACCAAGTTTT-GCAAAGCCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTA
1 TTTCTTTGC-CCTA-TTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* ** * * *
2135673 GTAATGAA-CTTCATTCATTTT-GTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAGAT
64 GTAAT-AATCTCCATTC-TTTTCAAGATT-GGCACTATAAACACATTCTCTTCATTAGGATACAT
* * * * * * * *
2135736 GATATTGATGATATT-CTTTTGCATGGAAATCG
126 GATATTGATGCT-TTGGTGTCGCAAGAAAAGCT
* **
2135768 TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCG
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* * * * * *
2135833 TAATAATCTCCTTTCTTTTCAAGAATGGGATCCAAAAACACATTCTCTTCATTAGGATACATGAC
65 TAATAATCTCCATTCTTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATGAT
*
2135898 ATTGATGCTTTTGTGTCGCAAGAAAAGCT
129 ATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * ** * * *
2135927 TTTCTTT-CCACCATTTTTAATAGAATCAATGTTTGTCTCTT--TTATG----A-AT--A--CTC
1 TTTCTTTGCC-CTA-TTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * *
2135980 ATACTATTC-CCAATTCTTTTTAAGATTAGGCACT-TAAA-ATCTAGTCT-TCTCATTAGGATAC
64 GTAATAATCTCC-ATTCTTTTCAAGATT-GGCACTATAAACA-C-ATTCTCT-TCATTAGGATAC
* * * * *
2136041 ACGATATTGGTGCTTTGGTTTCGTAA-AAAGGGCT
124 ATGATATTGATGCTTTGGTGTCGCAAGAAA-AGCT
** * * * * * * * *
2136075 TTT-TTCCCACCAAGTTTT-GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTA
1 TTTCTTTGC-CCTA-TTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* ** * * *
2136138 GTAATGAA-CTTCATTCATTTT-GTGATTAGGCACTATAATCACATTCTCCTCATTAGGATAAAT
64 GTAAT-AATCTCCATTC-TTTTCAAGATT-GGCACTATAAACACATTCTCTTCATTAGGATACAT
* * * * * *
2136201 GATATTGATGATATT-ATTTTGCATTG-AAATCT
126 GATATTGATGCT-TTGGTGTCGCA-AGAAAAGCT
* ** * * **
2136233 TTTCTTTGCCCTATTTTACTTAATATCGTAGTTCATCCCATAAATAAGACAAGCATCAATTCTCG
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* * * * * * *
2136298 TAACAATCT-C---C-TTTCAAGAATGGGATCCAAAAACACATTCTCTTCAATAGGATACATGAC
65 TAATAATCTCCATTCTTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATGAT
*
2136358 AATGATGCTTTGGTGTCGCAAGAAAAGCT
129 ATTGATGCTTTGGTGTCGCAAGAAAAGCT
* ** * * * * * * *
2136387 TTTCTTTCCACCGT-TTGAAATAGAATCAATGTTTATCTCTTAAATAAGACAAACATGAATACTC
1 TTTCTTTGC-CC-TATTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * * * * *
2136451 GTACTATTC-CCAATTCTTTCCAAGATTAGGCTCTTTAAATA-ATGT-TTTCTCATTAGGATATA
64 GTAATAATCTCC-ATTCTTTTCAAGATT-GGCACTATAAACACAT-TCTCT-TCATTAGGATACA
* * * *
2136513 -GATATTGGTGCTTTGCTTTCGCAAGAAAGGCT
125 TGATATTGATGCTTTGGTGTCGCAAGAAAAGCT
** * * ** * * * * * *
2136545 TTT-TTCCCACCAAGTTTT-GTAAAGCCTAAGTTCATGCCTCAAATGAGACAGACATGGATTCTA
1 TTTCTTTGC-CCTA-TTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* ** * *
2136608 GTAATGAA-CTTCATTCATTTT-GTGATTAGGCACTATAAACGCATTCTCTTCATTAGGATAAAT
64 GTAAT-AATCTCCATTC-TTTTCAAGATT-GGCACTATAAACACATTCTCTTCATTAGGATACAT
* * * * *
2136671 GATATTGAT-CATATT-TTTTTGCATGAAAATCGT
126 GATATTGATGC-T-TTGGTGTCGCAAGAAAAGC-T
* * * * *
2136704 TTT-TTTGCCCTATTTTACTTAAATTCAAAGTTCAACCCTTAAATAAGATC-AGCATCGATTCTA
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAACATGGATTCTC
* * * *
2136767 GTAACAATCTCCATTAC-TTTCAAGATTGGGAACTAAAAACACATTC-CATTCATTAGGAAACAT
64 GTAATAATCTCCATT-CTTTTCAAGATT-GGCACTATAAACACATTCTC-TTCATTAGGATACAT
*
2136830 GACATTGATGCTTTGGTGTCGCAAGAAAAGCT
126 GATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * ** * * * *
2136862 TTTACTTTGACC-ATTTT-TGATAGAATTAAAGTTTGTCTCTTACATAAGACAAACATGAATACT
1 TTT-CTTTGCCCTATTTTAT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCT
* * * * * * * * * *
2136925 CATACT-ATCCCCTTTCTTTTCAAGATTAGACACCATAAACATAGTCT-TCTCAGTAGGATACAA
63 CGTAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCTCT-TCATTAGGATACAT
* *
2136988 GATATTGATGCTTTGGTTTCGCAAGAAAGGC-
126 GATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * ** * * * * * *
2137019 TTTC-TTCCCACTAATTTT-TGTAAAGTCTAAGTTCATGACTCAAATGAGCCAATCGTGGGTTC-
1 TTTCTTTGCC-CT-ATTTTAT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCT
** * * ** * **
2137081 CAGTGTTGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTT-ATTAAGATTT
63 C-GTAATAATCTCCATTC-TTTTCAAGATT-GGCACTATAAACACATTCT-CTTCATTAGGATAC
* * * * * *
2137144 ATGATATTGATTACTTT-CTTTTGCATGAAAATCT
124 ATGATATTGA-TGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * *
2137178 TTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCA
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* * * * * * *
2137243 TAACAATCTCCTTTATTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGAC
65 TAATAATCTCCATTCTTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATGAT
*
2137308 ATTGATGCTATGGTGTCGCAAGAAAAGCT
129 ATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * * * *
2137337 TTTCTTTCCACCGT-TTTTAATAGAATCAATGTTTATCTCTCAAATAAGACAAACATGAATACTC
1 TTTCTTTGC-CC-TATTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * * * *
2137401 ATACTATTC-CCTATTCTTTTTAAGATTAGGCACTTTAAACATACTCT-TCTCATTAGGATACAT
64 GTAATAATCTCC-ATTCTTTTCAAGATT-GGCACTATAAACACATTCTCT-TCATTAGGATACAT
* * * *
2137464 GATATTGGTGCTTTGGTCTCACAAG-AAAGGT
126 GATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * * * * *
2137495 TTT-TTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATAGATTCT
1 TTTCTTT-GC-CCTATTTTAT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCT
* ** *** * *** *
2137558 AGTTTTGGGCTTCATTCTTTTTTTGATTAGGCACTATAAACACATTCTAC-TCATTAGGATAAAT
63 CGTAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCT-CTTCATTAGGATACAT
* * * * * * * * *
2137622 GATATTGATCACATT-CTTTTGCATGGAAATCG
126 GATATTGAT-GCTTTGGTGTCGCAAGAAAAGCT
* ** * * *
2137654 TTTCTTTGCCCTATTTTACTTAAAATCAAAGGTT-ATCCCTTATATAAGTTAAGCATTGATTCTA
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAA-GTTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * * *
2137718 GT-GTTATCTCCATTATTTTCAAGATTGGGAACTAAAAACACATTC-CATTCATTAGGAAACATG
64 GTAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCTC-TTCATTAGGATACATG
*
2137781 ACATTGATGCTTTGGTGTCGCAAGAAAAGCT
127 ATATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * ** * * *
2137812 TTTACTTCGACC-ATTTT-TTATAGATTAAAGTTTGTCTCTTACAT-A-AC--TCAT--A----C
1 TTT-CTTTGCCCTATTTTATTA-AAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * * * * * *
2137865 ----T-ATCCCCTTTCTTTTCAGGATTAGACACCATAAACATAGTCT-TCTCAATAGGATACAAG
64 GTAATAATCTCCATTCTTTTCAAGATT-GGCACTATAAACACATTCTCT-TCATTAGGATACATG
* *
2137924 ATATTGATGCTTTGGTTTCGCAAGAAAGGC-
127 ATATTGATGCTTTGGTGTCGCAAGAAAAGCT
** * * * * * * * * *
2137954 TTTCTTCCCACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACGTGGGTTC-C
1 TTTCTTTGC-CCTATTTTAT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
** * * ** * * **
2138017 AGTGTTGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTTAT
64 -GTAATAATCTCCATTC-TTTTCAAGATT-GGCACTATAAACACATTCTCTTCATTAGGATACAT
* * * * * * *
2138081 GATGTTGATGACTTT-CTTTAGCATGGAAATCT
126 GATATTGATG-CTTTGGTGTCGCAAGAAAAGCT
* * * * * * * *
2138113 TTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCCATAAATAAGATAAGCATCGATTCTCA
1 TTTCTTTGCCCTATTTTA-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCG
* * * * * * *
2138178 TAACAATCTCCTTTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCGTTAGGATACATGAC
65 TAATAATCTCCATTCTTTTCAAGATTGGCA-CTATAAACACATTCTCTTCATTAGGATACATGAT
*
2138243 ATTGATGCTTTGGTGTCGCAAGAAAAACT
129 ATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * ** * * * * *
2138272 TTTCTTTTCACC-ATTTTTAATAGAATCAATGTTTGTCTCTCAAATAAGACAAACATGAATACAC
1 TTTCTTTGC-CCTA-TTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTC
* * * * *
2138336 ATACTATTCCCCATTCTCTTCAAGATTAGGCACT
64 GTAATAATCTCCATTCTTTTCAAGATT-GGCACT
2138370 TTTGATGAAA
Statistics
Matches: 3086, Mismatches: 997, Indels: 532
0.67 0.22 0.12
Matches are distributed among these distances:
141 4 0.00
142 6 0.00
143 87 0.03
144 4 0.00
145 1 0.00
146 1 0.00
147 26 0.01
148 71 0.02
149 6 0.00
150 1 0.00
151 1 0.00
152 3 0.00
153 13 0.00
154 98 0.03
155 18 0.01
156 167 0.05
157 299 0.10
158 742 0.24
159 1210 0.39
160 113 0.04
161 98 0.03
162 32 0.01
163 28 0.01
164 8 0.00
165 48 0.02
166 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (157 bp):
TTTCTTTGCCCTATTTTATTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATGGATTCTCGT
AATAATCTCCATTCTTTTCAAGATTGGCACTATAAACACATTCTCTTCATTAGGATACATGATAT
TGATGCTTTGGTGTCGCAAGAAAAGCT
Found at i:2140022 original size:9 final size:9
Alignment explanation
Indices: 2140010--2140041 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
2140000 GAATGATAGG
2140010 AGGAGAGAT
1 AGGAGAGAT
2140019 AGGAGAGAT
1 AGGAGAGAT
*
2140028 AGTAGAGAT
1 AGGAGAGAT
2140037 AGGAG
1 AGGAG
2140042 GGATGATAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2140039 original size:42 final size:42
Alignment explanation
Indices: 2139980--2140098 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2139970 TAGCCCTCAA
* * *
2139980 AGAGAAAGAAGAGATAGGAGGAATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* *
2140022 AGAGATAGTAGAGATAGGAGGGATGATAGGAGAAGAGATATG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * *
2140064 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
2140099 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.45, C:0.01, G:0.43, T:0.12
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:2140051 original size:12 final size:11
Alignment explanation
Indices: 2139990--2140053 Score: 55
Period size: 12 Copynumber: 5.9 Consensus size: 11
2139980 AGAGAAAGAA
2139990 GAGATAGGAGG
1 GAGATAGGAGG
*
2140001 AATGATAGGAGG
1 GA-GATAGGAGG
2140013 AGAGATAGGA--
1 -GAGATAGGAGG
*
2140023 GAGATAGTA--
1 GAGATAGGAGG
2140032 GAGATAGGAGG
1 GAGATAGGAGG
2140043 GATGATAGGAG
1 GA-GATAGGAG
2140054 AAGAGATATG
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
9 16 0.36
11 3 0.07
12 24 0.55
13 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2140074 original size:24 final size:25
Alignment explanation
Indices: 2140031--2140079 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
2140021 GAGAGATAGT
* *
2140031 AGAGATAGGAGGGATGATAG-GAGA
1 AGAGATAGGAGAGATAATAGAGAGA
*
2140055 AGAGATATGAGAGATAATAGAGAGA
1 AGAGATAGGAGAGATAATAGAGAGA
2140080 GGAGGGATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.39, T:0.14
Consensus pattern (25 bp):
AGAGATAGGAGAGATAATAGAGAGA
Found at i:2146642 original size:475 final size:476
Alignment explanation
Indices: 2145027--2147540 Score: 2937
Period size: 475 Copynumber: 5.4 Consensus size: 476
2145017 GTCATCAACT
* *
2145027 TTAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
1 TTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTT
* * * * * *
2145092 TCCCACCAAGTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTG
66 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTG
* * * * * *
2145157 ATCTTCATTCTTTTTTTGATTAGGCACTATAAAAACATTCTCTTTTTTAAGATTAATGATATTGA
131 AACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAAGATAAATGATATTGA
* * * *
2145222 TGATTTTCTTTTTCAT-AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
196 TGATATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* * *
2145286 AAAT-AGTATAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATCGAGATCCAAAAACA
261 AAATAAG-ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * *
2145350 TATTCTCTTCGTTAGGATACATGACATTAATGCTTTGGTGTCACAATG-AAAGCTTTTTTGTCCA
325 CATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA-GAAAAGCTTTTTTTTCCA
* * *
2145414 CCATTTTTGATAGAATCAAGGTTTGTCTCTTAAAT-AGGACAAACATGAATACTCATACTATTCC
389 TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGG-CAAACATGAATACTCATACTATTCC
*
2145478 CCATTCTTTTCAAGATTAGGCACT
453 CCATTCTTTTCAAGATTAGGCACC
* * ** *
2145502 TTAAACATAGACTTCTCATTAGGTTACACGATATTGGGGCTTTGGTTTCACAAG-AAAGGTTTTT
1 TTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTT
* * *
2145566 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCA-ACCAAACATGGATTCTAATTT
66 TT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA-CAAACATGGATTCTAGTAT
* * * *
2145630 TGACCTTCTTTCATTTTCTGATTAGGCACTATAAAAACATTCTACTTATT----T-AATGATATT
129 TGAACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAAGATAAATGATATT
* * * * * * *
2145690 AAT-ATTTTCTTTTGCATAGAAATCTTTTTTTTACCCTATTTTCCTTAAAATTAAAGTTCATCCC
194 GATGATATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCC
* * * *
2145754 TCAAATAACACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAT-C--TAA-
259 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
** * * * * *
2145815 ATGTTCTATTCATTAGGATACATGACATTGATGCTTTGGGGTCGTAAGGAAAGCTTTTTTTTTCA
324 ACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCA
* * * * * *
2145880 TAG-TTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATACTTACACTATTGCC
389 TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTATTCCC
*
2145944 CA-----TTCAAGATTAGGCACT
454 CATTCTTTTCAAGATTAGGCACC
* * *
2145962 TTAAGCATAGTCTTCTCATTAGGATACACGATATTGATGCCTTGGTTTCACAAGAAAAGC-TTTC
1 TTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTT
* * *** * * *
2146026 TTCTCACCAATTTTTGTAAAGTCTAGGTTTGAATCTCAAATGAGCCAAACGTGGGTTCTAGTATT
66 TTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATT
* * * * *
2146091 GATCTTCATTCATTTTGTGATTAGGCACTATAAATATATTCTCTTTATTAAGATTAATGATATTG
130 GAACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAAGATAAATGATATTG
* * * * *
2146156 TTGAT-TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACATAATATCATAGTTAATCCCT
195 ATGATATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* ** *
2146220 TAAATAAGACAAGCATTGATTCTCGTGGCAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * *
2146285 AATTCTCTTCATTAGGATATATGATATTGATGCTTTGGTGTTGCAAAAAAAGCTTTTTTTTCCAT
325 CATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCAT
* * ** * *
2146350 CGTTTTTAATAGAATCAAAGTTTATCTCAAAAACAAGGCAGACATGAATACTCATACTATTCCCC
390 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTATTCCCC
* *
2146415 ATTCTTTTCAAGATTTGCCACC
455 ATTCTTTTCAAGATTAGGCACC
* * *
2146437 TTAAACATAGTCTTCTCGTTAGGATAC-CTGATATTGGTGCTTTGGTTTCACAGGAAAAGCTTTT
1 TTAAACATAGTCTTCTCATTAGGATACAC-GATATTGATGCTTTGGTTTCACAAGAAAAGCTTTT
* * * *
2146501 TTTCCACCAATTTTT-TATAGTCTAAGTTCGTGCCTCAAATGAGATAATCATGGATTCTAGTAAT
65 TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATT
* * * * * * * *
2146565 GAAGTTTATTCATTTTATGATTAGGCACTATAAACACATTTTCCTCATTAGGGTAAATGATATTG
130 GAACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAAGATAAATGATATTG
* *
2146630 ATGATATTCTTTTGCTTGGAAATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
195 ATGATATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* * * * *
2146695 TAAATAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTGAAGATTGGAAACCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * **
2146760 CATTC-CATTCAATAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAGGCTTCTCCTTCCA
325 CATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCA
* * * * * *
2146824 CCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGGTAGACATGAATACTCATACTATTTCC
389 TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTATTCCC
2146889 CATTCTTTTC---A--A-G----
454 CATTCTTTTCAAGATTAGGCACC
* * * *
2146902 ------ATAGTCTTCTCATTAGGATACCCTATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTT
1 TTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTT
* * *
2146961 TTCCACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATG
66 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTG
* * * *
2147026 AACTTCACTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
131 AACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAAGATAAATGATATTGA
* *
2147091 TGATATTCTTTTGCGTGGAAATCGTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
196 TGATATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
*
2147156 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
261 AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* * * **
2147221 ATTCTATTCACTAGGATACATGACAGTGACACTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCATC
326 ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCATC
* * * * * ** * * *
2147285 GTTTTTGACACAATCAAAGTTTGCCTCTTTAATACGATAAACATGAATAGTCATACTAATCTCCA
391 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTATTCCCCA
* *
2147350 TTCTTTTCAGGACTAGGCACC
456 TTCTTTTCAAGATTAGGCACC
* ** * * * *
2147371 ATAAATGTAGTCTTCTCATAACGATACTCGACATTGATGCTTTGGTTTCACAA-AAAAGGC-TTT
1 TTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAA-GCTTTT
* * *
2147434 CTTCCTAACAATTTTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAACATGGATTCTAGCT-
65 TTTCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG-TA
* * * *
2147498 TTGATC-TCAATCATTTTGTAATTAGGCACTATAGAAACATTCT
128 TTGAACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCT
2147541 TTTCATTAGG
Statistics
Matches: 1731, Mismatches: 257, Indels: 103
0.83 0.12 0.05
Matches are distributed among these distances:
459 136 0.08
460 431 0.25
461 4 0.00
462 1 0.00
464 2 0.00
465 165 0.10
466 59 0.03
467 2 0.00
468 2 0.00
469 70 0.04
470 154 0.09
471 2 0.00
472 1 0.00
474 148 0.09
475 547 0.32
476 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TTAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTT
TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTG
AACTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAAGATAAATGATATTGA
TGATATTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
ATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCATC
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTATTCCCCA
TTCTTTTCAAGATTAGGCACC
Found at i:2147102 original size:935 final size:925
Alignment explanation
Indices: 2145032--2147540 Score: 3029
Period size: 935 Copynumber: 2.7 Consensus size: 925
2145022 CAACTTTAAA
* *
2145032 CATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCA
1 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCA
* * *
2145097 CCAAGTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTT
66 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTT
* * *
2145162 CATTCTTTTTTTGATTAGGCACTATAAAAACATTCTCTTTTTTAAGATTAATGATATTGATGATT
131 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTTATTAAGATTAATGATATTGATGA-T
* * *
2145227 TTCTTTTTCAT-AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-
195 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATA
* * *
2145290 AGTATAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA-TCGAGATCCAAAAACATATT
260 AG-ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAG-GATCCAAAAACAAATT
* * * ** * * *
2145354 CTCTTCGTTAGGATACATGACATTAATGCTTTGGTGTCACAATGAAAGCTTTTTTGTCCACCATT
323 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATCGTT
* *
2145419 TTTGATAGAATCAAGGTTTGTCTCTTAAATAGGACAAACATGAATACTCATACTATTCCCCATTC
388 TTTGATAGAATCAAAGTTTGTCTCTTAAAAAGG-CAAACATGAATACTCATACTATTCCCCATTC
* * * *
2145484 TTTTCAAGATTAGGCACTTTAAACATAGACTTCTCATTAGGTTACAC-GATATTGGGGCTTTGGT
452 TTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATAC-CTGATATTGGTGCTTTGGT
* *
2145548 TTCACA-AGAAAGGTTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCA-AC
516 TTCACAGA-AAAGCTTTTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA-
* ** * *
2145611 CAAACATGGATTCTAATTTTGACCTTCTTTCATTTTCTGATTAGGCACTATAAAAACATTCTACT
578 CAAACATGGATTCTAGTAATGAACTTCTTTCATTTTATGATTAGGCACTATAAAAACATTCTACT
* * * * *
2145676 TATTTAATGATATTAATATTTTCTTTTGCATAGAAATCTTTTTTTTACCCTATTTTCCTTAAAAT
643 CATTTAATGATATTAATATATTCTTTTGCATAGAAATCATTTCTTTACCCTATTTTACTTAAAAT
* * *
2145741 TAAAGTTCATCCCTCAAATAACACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATT
708 CAAAGTTCATCCCTCAAATAACACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAACATT
* * * ** * * * *
2145806 GGGATCTAAATGTTCTATTCATTAGGATACATGACATTGATGCTTTGGGGTCGTAAGGAAAGCTT
773 GGAACCAAAACATTCCATTCAATAGGATACATGACATTGATGCTTTGAGGTCGCAAGGAAAGCTT
* ** * * *
2145871 TTTTTTTCATAGTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATACTTACA
838 CTCCTTCCACAGTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATACTCACA
*
2145936 CTATTGCCCATTCAAGATTAGGCACTTTAAG
903 CTATTGCCCATTC---ATT----A-TTCAAG
* * *
2145967 CATAGTCTTCTCATTAGGATACACGATATTGATGCCTTGGTTTCACAAGAAAAGC-TTTCTTCTC
1 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTC-C
* * *** *
2146031 ACCAATTTTTGTAAAGTCTAGGTTTGAATCTCAAATGAGCCAAACGTGGGTTCTAGTATTGATCT
65 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCT
* * *
2146096 TCATTCATTTTGTGATTAGGCACTATAAATATATTCTCTTTATTAAGATTAATGATATTGTTGAT
130 TCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTTATTAAGATTAATGATATTGATGAT
* * * *
2146161 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACATAATATCATAGTTAATCCCTTAAATA
195 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATA
* **
2146226 AGACAAGCATTGATTCTCGTGGCAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACAAATTCT
260 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACAAATTCT
* * *
2146291 CTTCATTAGGATATATGATATTGATGCTTTGGTGTTGCAAAAAAAGCTTTTTTTTCCATCGTTTT
325 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATCGTTTT
* * ** *
2146356 TAATAGAATCAAAGTTTATCTCAAAAACAAGGCAGACATGAATACTCATACTATTCCCCATTCTT
390 TGATAGAATCAAAGTTTGTCTCTTAAA-AAGGCAAACATGAATACTCATACTATTCCCCATTCTT
* * *
2146421 TTCAAGATTTGCCACCTTAAACATAGTCTTCTCGTTAGGATACCTGATATTGGTGCTTTGGTTTC
454 TTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACCTGATATTGGTGCTTTGGTTTC
* * *
2146486 ACAGGAAAAGCTTTTTTTCCACCAATTTTT-TATAGTCTAAGTTCGTGCCTCAAATGAGATAATC
519 ACA-GAAAAGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * *
2146550 ATGGATTCTAGTAATGAAGTT-TATTCATTTTATGATTAGGCACTATAAACACATTTTCCTCATT
583 ATGGATTCTAGTAATGAACTTCT-TTCATTTTATGATTAGGCACTATAAAAACATTCTACTCATT
* * * *
2146614 AGGGTAAATGATATTGATGATATTCTTTTGCTTGGAAATCATTTCTTTGCCCTATTTTACTTAAA
647 ----T-AATGATATTAAT-ATATTCTTTTGCATAGAAATCATTTCTTTACCCTATTTTACTTAAA
* * * *
2146679 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTGAAGA
706 ATCAAAGTTCATCCCTCAAATAACACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAACA
*
2146744 TTGGAAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTTTGATGTCGCAA-GA
771 TTGG-AACC--AAA-ACATTCCATTCAATAGGATACATGACATTGATGCTTTGAGGTCGCAAGGA
* * * ** *
2146808 AAGGCTTCTCCTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGGTAGACATGAA
832 AA-GCTTCTCCTTCCA-CAGTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAA
* *
2146873 TACTCATACTATTTCCCATTC-TT-TTCAAG
895 TACTCACACTATTGCCCATTCATTATTCAAG
* * *
2146902 -ATAGTCTTCTCATTAGGATACCCTATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCA
1 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCA
* * * * * *
2146966 CCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGAACTT
66 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTT
* * * * * *
2147031 CACTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATA
131 CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTTATTAAGATTAATGATATTGATGAT-
* *
2147096 TTCTTTTGCGTGGAAATCGTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATA
195 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATA
* * *
2147161 AGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCT
260 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACAAATTCT
* * * ** *
2147226 ATTCACTAGGATACATGACAGTGACACTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCATCGTTTT
325 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATCGTTTT
* * * * * ** * * *
2147290 TGACACAATCAAAGTTTGCCTCTTTAATACGATAAACATGAATAGTCATACTAATCTCCATTCTT
390 TGATAGAATCAAAGTTTGTCTC-TTAAAAAGGCAAACATGAATACTCATACTATTCCCCATTCTT
* * * ** * * * *
2147355 TTCAGGACTAGGCACCATAAATGTAGTCTTCTCATAACGATA-CTCGACATTGATGCTTTGGTTT
454 TTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACCT-GATATTGGTGCTTTGGTTT
* * * *
2147419 CACAAAAAAGGC-TTTCTTCCTAACAATTTTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAA
518 CACAGAAAA-GCTTTTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * ** * * *
2147483 ACATGGATTCTAGCT-TTGATC-TCAATCATTTTGTAATTAGGCACTATAGAAACATTCT
581 ACATGGATTCTAG-TAATGAACTTCTTTCATTTTATGATTAGGCACTATAAAAACATTCT
2147541 TTTCATTAGG
Statistics
Matches: 1339, Mismatches: 204, Indels: 63
0.83 0.13 0.04
Matches are distributed among these distances:
933 14 0.01
934 414 0.31
935 660 0.49
936 19 0.01
937 1 0.00
938 1 0.00
939 11 0.01
940 101 0.08
941 4 0.00
943 6 0.00
944 49 0.04
945 59 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (925 bp):
CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCA
CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTT
CATTCATTTTGTGATTAGGCACTATAAAAACATTCTCTTTATTAAGATTAATGATATTGATGATT
TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAA
GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACAAATTCTC
TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTTTTTCCATCGTTTTT
GATAGAATCAAAGTTTGTCTCTTAAAAAGGCAAACATGAATACTCATACTATTCCCCATTCTTTT
CAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACCTGATATTGGTGCTTTGGTTTCAC
AGAAAAGCTTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
GATTCTAGTAATGAACTTCTTTCATTTTATGATTAGGCACTATAAAAACATTCTACTCATTTAAT
GATATTAATATATTCTTTTGCATAGAAATCATTTCTTTACCCTATTTTACTTAAAATCAAAGTTC
ATCCCTCAAATAACACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAACATTGGAACCAA
AACATTCCATTCAATAGGATACATGACATTGATGCTTTGAGGTCGCAAGGAAAGCTTCTCCTTCC
ACAGTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATACTCACACTATTGCC
CATTCATTATTCAAG
Found at i:2147791 original size:316 final size:316
Alignment explanation
Indices: 2147252--2147865 Score: 905
Period size: 316 Copynumber: 1.9 Consensus size: 316
2147242 GACAGTGACA
* *
2147252 CTTTGGTGTCGCAAGAAAAGCTTTTTTTCCATCGTTTTTGACACAATCAAAGTTTGCCTCTTTAA
1 CTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGACACAATCAAAGTTTGCCTCTTAAA
* * *
2147317 TACGATAAACATGAATAGTCATACTAATCTCCATTCTTTTCAGGACTAGGCACCATAAATGTAGT
66 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGACTAGGCACCATAAATGTAGT
*
2147382 CTTCTCATAACGATACTCGACATTGATGCTTTGGTTTCACAAAAAAGGCTTTCTTCCTAACAATT
131 CTTCTCATAACGATACTCGACATTGATCCTTTGGTTTCACAAAAAAGGCTTTCTTCCTAACAATT
2147447 TTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAACATGGATTCTAGCT-TTGATC-TCAATC
196 TTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAACATGGATTCTAG-TATTGATCTTCAATC
*
2147510 ATTTTGTAATTAGGCACTATAGAA-ACATTCTTTTCATTAGGATACGTGGCATTGTTG
260 ATTTTGTAATTAGGCACTATA-AACACATTCTTCTCATTAGGATACGTGGCATTGTTG
* * * * *
2147567 CTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
1 CTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTTGACACAATCAAAGTTTGCCTCTTAA
* * *
2147632 ATAAGACAAACATGAATTGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTAG
65 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGACTAGGCACCATAAATGTAG
* * * *
2147697 TCTTCTCATAAGGATACAT-GATATTGATCCTTTGGTTTCACAAGAAAGGCTTTCTTCC-CACTA
130 TCTTCTCATAACGATAC-TCGACATTGATCCTTTGGTTTCACAAAAAAGGCTTTCTTCCTAAC-A
*** * * **
2147760 ATTTTTGTAAAGTCTAAGTTTTTGCCTCAAATGAGCCAAACATGGGTTCTAGTATTGATCTTCTC
193 ATTTTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCAA
*
2147825 TCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTA
258 TCATTTTGTAATTAGGCACTATAAACACATTCTTCTCATTA
2147866 AGATTAATGA
Statistics
Matches: 266, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
315 23 0.09
316 204 0.77
317 39 0.15
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (316 bp):
CTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGACACAATCAAAGTTTGCCTCTTAAA
TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGACTAGGCACCATAAATGTAGT
CTTCTCATAACGATACTCGACATTGATCCTTTGGTTTCACAAAAAAGGCTTTCTTCCTAACAATT
TTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCAATCA
TTTTGTAATTAGGCACTATAAACACATTCTTCTCATTAGGATACGTGGCATTGTTG
Found at i:2147859 original size:158 final size:155
Alignment explanation
Indices: 2147381--2147863 Score: 419
Period size: 158 Copynumber: 3.1 Consensus size: 155
2147371 ATAAATGTAG
* * *
2147381 TCTTCTCATAACGATAC-TCGACATTGATGCTTTGGTTTCACAAAAAAGGCTTTCTTCCTAAC-A
1 TCTTCTCATAAGGATACAT-GACATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCC-CACTA
* * *
2147444 ATTTTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAACATGGATTCTAGCT-TTGATCTCAA
64 ATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAG-TATTGATCTC-T
*
2147508 TCATTTTGTAATTAGGCACTATAGAAACAT
127 TCATTTTGTGATTAGGCACTATA-AAACAT
* * * * * * * * *
2147538 TCTTTTCATTAGGATACGTGGCATTGTTGCTTTGGTGTT-GCAAGAAAAGCTTTTTTTTCCACCT
1 TCTTCTCATAAGGATACATGACATTGATGCTTTGGT-TTCACAAGAAAGGC-TTTCTTCCCA-CT
* * * * * * *
2147602 --TTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATTGTCA-TACTAATC
63 AATTTTTG-TA-AAGTCTAAGTTTGTGC-CTCAAATGAGACAAACATGGATTCT-AGTATTGAT-
* * * ** *
2147662 CCCATTC-TTTTCGGGATTAGGCACCATAAATGTAG
123 CTC-TTCATTTT-GTGATTAGGCACTATAAA-ACAT
* *
2147697 TCTTCTCATAAGGATACATGATATTGATCCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACTAAT
1 TCTTCTCATAAGGATACATGACATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACTAAT
* * *
2147762 TTTTGTAAAGTCTAAGTTTTTGCCTCAAATGAGCCAAACATGGGTTCTAGTATTGATCTTCTCTC
66 TTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATC-TCT-TC
2147827 ATTTTGTGATTAGGCACTATAAACACAT
129 ATTTTGTGATTAGGCACTATAAA-ACAT
2147855 TCTTCTCAT
1 TCTTCTCAT
2147864 TAAGATTAAT
Statistics
Matches: 248, Mismatches: 56, Indels: 43
0.71 0.16 0.12
Matches are distributed among these distances:
157 53 0.21
158 124 0.50
159 71 0.29
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (155 bp):
TCTTCTCATAAGGATACATGACATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACTAAT
TTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTCTTCAT
TTTGTGATTAGGCACTATAAAACAT
Found at i:2153118 original size:9 final size:9
Alignment explanation
Indices: 2153104--2153164 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2153094 CTCTCTTTAT
2153104 TATCTCTCC
1 TATCTCTCC
2153113 TATCTCTCC
1 TATCTCTCC
* *
2153122 T-CCTAT-C
1 TATCTCTCC
*
2153129 -ATCCCTCC
1 TATCTCTCC
*
2153137 TATCTCTAC
1 TATCTCTCC
*
2153146 TGTCTCTCC
1 TATCTCTCC
2153155 TATCTCTCC
1 TATCTCTCC
2153164 T
1 T
2153165 CCTATCATCC
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2153123 original size:42 final size:42
Alignment explanation
Indices: 2153077--2153194 Score: 173
Period size: 42 Copynumber: 2.8 Consensus size: 42
2153067 TCTTCTTCTT
* * * *
2153077 TCCTCCTGTCATCCCTCCTCTCTTTATTATCTCTCCTATCTC
1 TCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTC
*
2153119 TCCTCCTATCATCCCTCCTATCTCTACTGTCTCTCCTATCTC
1 TCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTC
* *
2153161 TCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TCCTCCTATCATCCCTCCTATCTCTACTATCTCT
2153195 TGAGGGCTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.44
Consensus pattern (42 bp):
TCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTC
Found at i:2153126 original size:12 final size:12
Alignment explanation
Indices: 2153109--2153185 Score: 68
Period size: 12 Copynumber: 5.9 Consensus size: 12
2153099 TTTATTATCT
2153109 CTCCTATCTCTC
1 CTCCTATCTCTC
2153121 CTCCTATCATC-C
1 CTCCTATC-TCTC
2153133 CTCCTATCTCTACTGTC
1 CTCCTA--TCT-C--TC
2153150 TCTCCTATCTCTC
1 -CTCCTATCTCTC
2153163 CTCCTATCATC-C
1 CTCCTATC-TCTC
2153175 CTCCTATCTCT
1 CTCCTATCTCT
2153186 TCTTTCTCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 20
0.73 0.00 0.27
Matches are distributed among these distances:
11 2 0.04
12 32 0.58
13 7 0.13
14 3 0.05
15 1 0.02
16 3 0.05
17 1 0.02
18 6 0.11
ACGTcount: A:0.12, C:0.47, G:0.01, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2153138 original size:24 final size:24
Alignment explanation
Indices: 2153109--2153185 Score: 94
Period size: 24 Copynumber: 3.5 Consensus size: 24
2153099 TTTATTATCT
2153109 CTCCTATCTCTCCTCCTATCATCC
1 CTCCTATCTCTCCTCCTATCATCC
* *
2153133 CTCCTA--TCT-CTACTGTC-T--
1 CTCCTATCTCTCCTCCTATCATCC
2153151 CTCCTATCTCTCCTCCTATCATCC
1 CTCCTATCTCTCCTCCTATCATCC
2153175 CTCCTATCTCT
1 CTCCTATCTCT
2153186 TCTTTCTCTT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
18 6 0.14
20 4 0.09
21 12 0.28
22 4 0.09
24 17 0.40
ACGTcount: A:0.12, C:0.47, G:0.01, T:0.40
Consensus pattern (24 bp):
CTCCTATCTCTCCTCCTATCATCC
Found at i:2156092 original size:12 final size:11
Alignment explanation
Indices: 2156070--2156145 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2156060 AGAGAAAGAA
*
2156070 GAGAGAGGAGG
1 GAGATAGGAGG
2156081 GATGATAGGAGG
1 GA-GATAGGAGG
*
2156093 AGAGACAGGA--
1 -GAGATAGGAGG
*
2156103 GAGATAGTA--
1 GAGATAGGAGG
2156112 GAGATAGGAGG
1 GAGATAGGAGG
2156123 GATGATAGGAGG
1 GA-GATAGGAGG
*
2156135 AGAGACAGGAG
1 -GAGATAGGAG
2156146 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2156102 original size:24 final size:24
Alignment explanation
Indices: 2156069--2156154 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2156059 AAGAGAAAGA
*
2156069 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2156093 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2156111 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2156135 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2156155 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2156121 original size:42 final size:42
Alignment explanation
Indices: 2156060--2156178 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2156050 TAGCCCTCAA
* *
2156060 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2156102 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
2156144 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2156179 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2191489 original size:475 final size:474
Alignment explanation
Indices: 2190140--2192272 Score: 2694
Period size: 475 Copynumber: 4.5 Consensus size: 474
2190130 NNNNNNNNNN
** * * *
2190140 TTCTAGTAACAATCTCCATTATTTTCAAGATTGTTAACGAAAAACAAATTCCATTTATTAGGATA
1 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
* **
2190205 CATGACATTGCTACTTTCGTGTCATAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAA
66 CATGACATTGCTGCTTTCGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAA
* * *
2190270 GTTTGTCTTTTAAATAAGACAAACATGAATGCTCATACTAATCCCC-TTCTTTTCAGGATTAGAC
131 GTTTCTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTTCAGGATTAGAC
* * *
2190334 ACCAAAAACATAGTCTTC-CTAATAGGATACAAGATATTGATGCTTTGGTTTCACAGGAAAGGCC
196 ACCATAAACATAGTCTTCTC-AATAGGATACAAGATATTGATGCTTTGGTTTCACAAGAAAGGCT
* * * * * *
2190398 TGTTCCCTAACAATGTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACGTGGGTTTTAGT
260 TTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGT
* * *
2190463 ATTGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAAGTTTAATGATA
325 AATGAACTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATA
*
2190528 TTGATGATTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTACTTAAAATTAAAGTTCATCCC
390 TTGATGATTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCC
* *
2190593 TTAAATAAGACAAGCACCAA
455 TTAAATAAGACAAGCATCGA
*
2190613 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACAAATTCCATTCATTAGGATA
1 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
* * *
2190678 CATGAC--TGATGCTTTCGTGTCACAAGAAAAGCTTTTACTTCCACCATTTTTAATAGAATCAAA
66 CATGACATTGCTGCTTTCGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAA
* * * * *
2190741 GTTTGC-CTCTTAAATAAGAGAAAAATGAATATTCATACTAATCCTCTTTCTTTCCAGGATTAGA
131 GTTT-CTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTTCAGGATTAGA
* * * *
2190805 CACCAAAAACATAGTCTTCTCAATAGGATAGAAGATATTGATGCTTTCGTTTCACAGGAAAGGCT
195 CACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGATGCTTTGGTTTCACAAGAAAGGCT
* * * * * * ** *
2190870 TATTCCTTACTAATTTTTGCAAAGTCAAAGTTCATGCCACAAATGAGCCAAATGTGGCTTCTAGT
260 TTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGT
* * * *
2190935 AGTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATT
325 AATGAACTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATA
* * *
2191000 TTGATGATTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTACATAATATCATAGTTCATCCC
390 TTGATGATTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCC
2191065 TTAAATAAGACAAGCATCGA
455 TTAAATAAGACAAGCATCGA
* * * ** *
2191085 TTCTTGTGACAATCTCCATTCTTTTCAAGATTAGGGTTCCAAAAACACATTATC-TTCATTAGGA
1 TTCTAGTAACAATCTCCATTATTTTCAAGATT-GGGAACCAAAAACACATT-CCATTCATTAGGA
* * * *
2191149 TACATGACATTGCTGCTTTTGTGTTGCAAGAAAAGCTTTT-CTTTCCACCGTTTTGGATAGAATC
64 TACATGACATTGCTGCTTTCGTGTCGCAAGAAAAGCTTTTAC-TTCCACCATTTTTGATAGAATC
** * * * * *
2191213 AAAGTTTCTCTCTTAAATAAGGTAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTT
128 AAAGTTTCTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTTCAGGATTA
* * * ** * * *
2191278 GGCACCTTAAACATAGTCTTCTCATTAGGATACCCGATATTGGTGCGTTGGTTTCACAAGAATGG
193 GACACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGATGCTTTGGTTTCACAAGAAAGG
* **
2191343 CTTTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGATACAAACATGGATTCTA
258 CTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTA
* * *
2191407 GTAATGAACTTCATTCTTTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
323 GTAATGAACTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGA
* ** * *
2191472 TATCGATGGCGTTCTTTTGCTTGGAAATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCA
388 TATTGAT-GATTTCTTTTGCATGG-AATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCA
*
2191537 TCCCCTAAATAAGACAAGCATCGA
451 TCCCTTAAATAAGACAAGCATCGA
* * *
2191561 TTCTAGTAACAATCTCCATCATTTTCAAGATTGGGAACCAAAAACACGTTCCATTCAATAGGATA
1 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
* * * *
2191626 CGTGACATTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATTAAA
66 CATGACATTGCTGCTTTCGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAA
* * *
2191691 GTTTGTCTCTTAAATAAGACAAACATGAAAACTCATACTAATCCCCTTTCTTTTCAAGATTAGAC
131 GTTTCTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTTCAGGATTAGAC
* * * * *
2191756 ACCATAAACATAGTCTTCTCAATAGCATACATGATATTGGTGCTTTGGTTTCGCAAGAAAAGCTT
196 ACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGATGCTTTGGTTTCACAAGAAAGGCTT
* * * *
2191821 TCTTCCC-ACCAATTTTGGTAAAGTCTATGTT--TG--T-ACAT----CAAAC----A----AGC
261 T-TTCCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGT
* * * * *
2191868 CA--AAC--GAGTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCACTAAGATTAATGATA
325 AATGAACTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATA
* * * *
2191929 TTGATGA-TTCTTTTAGCATTGAAATCTTTTCTTTGTCCTATTTTACTTAATATCATAGTTCATC
390 TTGATGATTTCTTTT-GCA-TGGAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATC
2191993 CCTTAAATAAGACAAGCATCGA
453 CCTTAAATAAGACAAGCATCGA
** * *
2192015 TTCTCTTAATAATCTCCATTATTTTCAAGTTTGGGAACCAAAAACACATTCCATTCATTAGGATA
1 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
* * *
2192080 CATGGCATTGAC-GCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTTATAGAATCAA
66 CATGACATTG-CTGCTTTCGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATCAA
* * * *
2192144 AGTTTGC-CTTTTACATAAGACAAACATGAATACTCATATTAATCCCCTTTCTTTTCAGGGTTAG
130 AGTTT-CTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTTCAGGATTAG
* * * * * *
2192208 ACACTATAAACATAGTTTTCTCAATAGGATACATGATATTAATGTTTTGGATTCACAAGAAAGGC
194 ACACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGATGCTTTGGTTTCACAAGAAAGGC
2192273 ACTATAAAAG
Statistics
Matches: 1453, Mismatches: 189, Indels: 55
0.86 0.11 0.03
Matches are distributed among these distances:
453 7 0.00
454 290 0.20
455 55 0.04
457 3 0.00
459 3 0.00
463 1 0.00
467 5 0.00
471 94 0.06
472 300 0.21
473 101 0.07
474 116 0.08
475 364 0.25
476 114 0.08
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
CATGACATTGCTGCTTTCGTGTCGCAAGAAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAA
GTTTCTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTTCAGGATTAGAC
ACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGATGCTTTGGTTTCACAAGAAAGGCTT
TTTCCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTA
ATGAACTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATAT
TGATGATTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
TAAATAAGACAAGCATCGA
Found at i:2194449 original size:947 final size:942
Alignment explanation
Indices: 2192269--2195597 Score: 4291
Period size: 947 Copynumber: 3.5 Consensus size: 942
2192259 TTCACAAGAA
*
2192269 AGGCACTATAAA-AGCATTCTCCTCAATAAGATTAATGATATTGATGATTTT-TTTTGCATGCAA
1 AGGCACTATAAACA-CATTCTCCTCAATAAGATTAATGATATTGATGATTTTCTTTTGCATGGAA
* * * * * *
2192332 ATATTTTCTTTGCCTTATTTTCCCTAAAATCAAAGTTCTTCCCTTAAATAAGACAATG-ATCAAT
65 ATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-GCATCGAT
* * * * *
2192396 TCTCGTGACTATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTC-TTCATTTGGATA
129 TCTCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTC-CATTCATTAGGATA
* *
2192460 TATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT-CTTTCCACTGTTTTTGATAGAATCAA
193 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCCAC-GTTTTTGATAGAATCAA
* *
2192524 AGTTTATCTCTTAAATATGGCAGACATGAATACTCATAC-ATTCCCCATTCTTTTCAAGATTTGG
256 AGTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGG
* *
2192588 CACCTTAAACATAGTCTTCTCATTAGGATAC-CTGATATTGGTGCTTTGGTTTCCCAGGAAAA-G
321 CACCTTAAACATAGTCTTCTCATTAGGATACTC-GATATTGGTGCATTGGTTTCACA-GAAAAGG
* * *
2192651 CTTTTTTACCACCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTA
384 CTTTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTA
* * * *
2192716 GTAATGAACTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTA-GGATAAAT
448 GTAATGAACTTCATTCAATTTGTGATTAGGCACTACAAACACATTCT-CTGCATTACAG-TAAAC
* * * * * ** *
2192779 GACA-TTGATGATATTCTTTTGCTTGGAAATCGTTTCTTTGTCGAAGTTTACTTAAAATCAAAGT
511 AAAATTTG-TGATATTCTTTTGCGTGGAAATCATTTCTTTGCCCTA-TTTACTTAAAATCAAAGC
*
2192843 TCATCCCCTAAATAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAAC
574 TCATCCCTTAAATAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAAC
* *
2192908 CAAAAACACATTCGATTCATTAGGATACATGAC---A-----T--T-TCGCTAGAAAAGCTTTTG
639 CAAAAACACATTCCATTCATTAGGATACATGACTTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-
* * * *
2192962 CTTCCACCATTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGGTAAACATGAACACTCATACT
703 CTT-CACGA--TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACT
* *
2193027 AA-TCCCTTTTCTTTTTAGGATTAGACACCATAAGCATAGTCTTCTCAA-AAGGATACACGATAT
765 AATTCCC-TTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCAATAAGGATACACGATAT
* * * * * *
2193090 TGCAGCTTTGCTTTCGCAAGAAAAGCCTTTTTCC-CAGC-AATTTTTGTAAAGTCTAAGTTTGTA
829 TG-AGCTTTGGTTTCAC-AGGAAAGAC-TTTTCCTCA-CTAATTTTTGTAAAGTCTAAGTTCGTG
* *
2193153 CCTCAAATGAGCCAAACATGGGTTCTAGTATTGACTTCATTCATTTT-TGATT
890 CCTCAAATGAGCCAAACATGGGTTCTAGTACTAACTTCATTCATTTTGTGATT
*
2193205 AGGCACTATAAACACATTCTCCTC-ATCAAGATTAATGATATTGATGA-TTTCTTTTGCACGGAA
1 AGGCACTATAAACACATTCTCCTCAAT-AAGATTAATGATATTGATGATTTTCTTTTGCATGGAA
* * *
2193268 ATCTTTTCTTTGCCCTATTTTACATAATATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATT
65 ATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * * *
2193333 CTAGTAACAATCACCATTATTTTCAAGATTGGGAAGCAAAAACACAATCCATTCATTAGGTTACT
130 CTCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACA
* * *
2193398 TGATATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACCTTTTTTGATAGAATCAAAGT
195 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCA-CGTTTTTGATAGAATCAAAGT
* * * *
2193463 TTGTCTCGTAAATAAGGTAGACATGAATACCCATACTATTCCCCATTCTTTTCAAGATTTAGCAC
259 TTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCAC
2193528 CTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTTTT
324 CTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTTTT
*
2193593 TTCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
389 TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
*
2193658 AACTTCATTCAATTTGTGTTTAGGCACTACAAACACATTCTCTGCATTACAGTAAACAAAATTTG
454 AACTTCATTCAATTTGTGATTAGGCACTACAAACACATTCTCTGCATTACAGTAAACAAAATTTG
2193723 TGATATTCTTTTGCGTGGAAATCATTTCTTTGCCCTATATTACTTAAAATCAAAGCTCATCCCTT
519 TGATATTCTTTTGCGTGGAAATCATTTCTTTGCCCTAT-TTACTTAAAATCAAAGCTCATCCC-T
* *
2193788 TAAATAAGACAAGCATCAATTCTAGTAACAATCTCCATTATTTTCAA-ATTGGGAACTAAAAACA
582 TAAATAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACA
*
2193852 AATTCCATTCATTAGGATACACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-T-A
647 CATTCCATTCATTAGGAT--ACATGAC-TTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTCA
* ** * *
2193915 -GAATACATTGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATCAATACTCATACTAATTCCCT
708 CGATTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTAATTCCCT
* * * *
2193979 TTCTTTTCAGGATTCGACACCAAAAACATAGTCTTCTCAATAAGG-TACAAGATATTGATGCTCT
773 TTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCAATAAGGATACACGATATTGA-GCTTT
* * *
2194043 GGTTTCACAGGAAAGGCTTGTTCCTCACTAATTTTTGTAAAGTCTAAGTTCATGCTTCAAATGAG
837 GGTTTCACAGGAAAGACTT-TTCCTCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* *
2194108 CCAAACGTGGGTTCTAGTACTAATCTTCATTCATTTTGTAATT
901 CCAAACATGGGTTCTAGTACTAA-CTTCATTCATTTTGTGATT
* *
2194151 AGGCACTATAAACACATTCTCCTTAATAAGATTAATGATATTGATAATTTTCTTTTGCATGGAAA
1 AGGCACTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAA
* * *
2194216 TCTTTTCTTTGCCCTATTTTACTTAATATCATAGTTCATCCCTCAAATAAGACAAGCATCGATTC
66 TCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *** * *
2194281 TCCTAACAATCTCCATTCGATTCAAGGTTGGGATCCAAAAACACATTCTC-TTCATTAGGATACA
131 TCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTC-CATTCATTAGGATACA
* *
2194345 AGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCATCGTTTTTTATAGAATCAAAG
195 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCCA-CGTTTTTGATAGAATCAAAG
* *
2194409 TTTGTCTCTTAAATAAGGCAGACATGTATACTCATACTATTCCCCATTCTTTTCATGATTTGGCA
258 TTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCA
*
2194474 CTTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTTT
323 CCTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTTT
* *
2194539 TTTCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGTAAT
388 TTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
2194604 GAACGTCATTCAATTTGTGTTTAGGCACTACAAACACATTCTCTGCATTACAGTAAACAAAATTT
453 GAACTTCATTCAATTTGTGATTAGGCACTACAAACACATTCTCTGCATTACAGTAAACAAAATTT
*
2194669 GTGATATTCTTTTGCGTGGAAATCATTTCTTCGCCCTATTTTACTTAAAATCAAAGCTCATCCCT
518 GTGATATTCTTTTGCGTGGAAATCATTTCTTTGCCCTA-TTTACTTAAAATCAAAGCTCATCCCT
* *
2194734 TAAATAAGACAAGCATCGATTCTAGTAACAATCTCCGTTCTTTTCAAGATTGGGAACCAAAAACA
582 TAAATAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACA
* * *
2194799 CATTCCTTTCATTAGGATACATGGCCTTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
647 CATTCCATTCATTAGGATACAT-GACTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TT-CA-
* * * * *
2194864 CGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGGCAGACATGAATGCTCAAACT-ATTCCC
708 CG-ATTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTAATT-CC
* * * * * * * * *
2194928 CATTCTTTTCAAGATTTGGCACCCTAAACATAGTATTCTC-ATTAGGATACCCGATATCG-GCAC
771 CTTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCAATAAGGATACACGATATTGAG--C
* ** * *
2194991 TTTGGTTTCACAAGAAAGACTTTTTTTCCACTAATTTTTCTAAAGTCTAAGTTCGTGCCTCGAAT
834 TTTGGTTTCACAGGAAAGACTTTTCCT-CACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
2195056 GAGACAAACCTGGATTCTAGTAACGAACTTCATTTATTTTGTGTTT
898 GAGCCAAACATGGGTTCTAGT-ACTAACTTCATTCATTTTGTGATT
* * * * * *
2195102 AGGCACTATAAACACATTCTCCTCATTATGATAAACGATATTCATGATATTCTTTTGCATGGAAA
1 AGGCACTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGATTTTCTTTTGCATGG-AA
* * *
2195167 AT-GTTTCTTTACCCTATTTTACTTAAAATCAAAGTTCA-CCTCTTAAATATGACAAGCATCGAT
65 ATCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGAT
* * * * *
2195230 TCTCTTAGCAATCTCTAATATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATAT
129 TCTCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATAC
* ** * * * *
2195295 GTGGTATTGATCCTTTGGAGTCGCAAGGAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAAG
194 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCA-CGTTTTTGATAGAATCAAAG
* * * *
2195360 TTTGTCTCTTAAATAAGGTAAACATGAATACTTATACTATT-CCCATTCTTTTCAAGATATGGCA
258 TTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCA
* ** * *
2195424 CCTTAAACATAGTCTTCTCATTAGGATACACGACGTTGGTGCTTTGGTTTCGCA-AGAAAGGCTT
323 CCTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGA-AAAGGCTT
* * * * *
2195488 TCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGCCAAACATGGGTTCTAG-A
387 T-TTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* * *
2195552 ATTGATCTTCATTCATTTTGTGATTAGGCACTATAAA-ACCATTCTC
451 A-TGAACTTCATTCAATTTGTGATTAGGCACTACAAACA-CATTCTC
2195598 CTCATTAAGA
Statistics
Matches: 2105, Mismatches: 223, Indels: 115
0.86 0.09 0.05
Matches are distributed among these distances:
935 10 0.00
936 446 0.21
937 137 0.07
938 8 0.00
942 3 0.00
943 13 0.01
944 161 0.08
945 55 0.03
946 96 0.05
947 531 0.25
948 3 0.00
949 4 0.00
950 113 0.05
951 516 0.25
952 9 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (942 bp):
AGGCACTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAA
TCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
TCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACAT
GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACGTTTTTGATAGAATCAAAGTTT
GTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCACCT
TAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTTTTTT
CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAA
CTTCATTCAATTTGTGATTAGGCACTACAAACACATTCTCTGCATTACAGTAAACAAAATTTGTG
ATATTCTTTTGCGTGGAAATCATTTCTTTGCCCTATTTACTTAAAATCAAAGCTCATCCCTTAAA
TAAGACAAGCATCGATTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATT
CCATTCATTAGGATACATGACTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCACGATTTGA
TAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTAATTCCCTTTCTTTTC
AGGATTAGACACCATAAACATAGTCTTCTCAATAAGGATACACGATATTGAGCTTTGGTTTCACA
GGAAAGACTTTTCCTCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGG
GTTCTAGTACTAACTTCATTCATTTTGTGATT
Found at i:2194707 original size:475 final size:474
Alignment explanation
Indices: 2192269--2195608 Score: 3940
Period size: 475 Copynumber: 7.1 Consensus size: 474
2192259 TTCACAAGAA
* * ** * * *
2192269 AGGCACTATAAA-AGCATTCTCCTCAATAAGATTAATGATA-TTGATGAT-TTTTTTTGCATGCA
1 AGGCACTATAAACA-CATTCT-CTCATTAAGATAAACAAAATTTGATGATATTCTTTTGCATGGA
* * * * *
2192331 AAT-ATTTTCTTTGCCTTATTTTCCCTAAAATCAAAGTTCTTCCCTTAAATAAGACAATG-ATCA
64 AATCA-TTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-GCATCG
* * * * * *
2192394 ATTCTCGTGACTATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTC-TTCATTTGGA
127 ATTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTC-CATTCATTAGGA
* *
2192458 TATATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT-CTTTCCACTGTTTTTGATAGAATC
191 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCCAC-GTTTTTGATAGAATC
* *
2192522 AAAGTTTATCTCTTAAATATGGCAGACATGAATACTCATAC-ATTCCCCATTCTTTTCAAGATTT
254 AAAGTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTT
*
2192586 GGCACCTTAAACATAGTCTTCTCATTAGGATAC-CTGATATTGGTGCTTTGGTTTCCCAGGAAAA
319 GGCACCTTAAACATAGTCTTCTCATTAGGATACAC-GATATTGGTGCTTTGGTTTCACA-GAAAA
* *
2192650 -GCTTTTTTACCACCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTC
382 GGCTTTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
2192714 TAGTAATGAACTTCATTCATTTTGTGATT
446 TAGTAATGAACTTCATTCATTTTGTGATT
* ** * *
2192743 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGACA-TTGATGATATTCTTTTGCTTGGAA
1 AGGCACTATAAACACATTCT-CTCATTAAGATAAACAAAATTTGATGATATTCTTTTGCATGGAA
* * ** * *
2192807 ATCGTTTCTTTGTCGAAGTTTACTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATT
65 ATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
*
2192872 CTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCGATTCATTAGGATACA
130 CTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACA
* * * *
2192937 TGAC----A-----T--T-TCGCTAGAAAAGCTTTTGCTTCCACCATTTTTGATAGAATCAAAGC
195 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCA-CGTTTTTGATAGAATCAAAGT
* * * * ** * * * *
2192990 TTGTCTCTTAAATAAGGTAAACATGAACACTCATACTAATCCCTTTTCTTTTTAGGATTAGACAC
259 TTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCAC
* * ** ** * * *
2193055 CATAAGCATAGTCTTCTCAAAAGGATACACGATATTGCAGCTTTGCTTTCGCAAGAAAAGCCTTT
324 CTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCAC-AGAAAAGGCTTT
* * * * * * *
2193120 TTCCCAGCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGGTTCTAGTATT
388 TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
2193185 G-ACTTCATTCATTTT-TGATT
453 GAACTTCATTCATTTTGTGATT
* * ** * *
2193205 AGGCACTATAAACACATTCTCCTCATCAAGATTAATGATA-TTGATGAT-TTCTTTTGCACGGAA
1 AGGCACTATAAACACATTCT-CTCATTAAGATAAACAAAATTTGATGATATTCTTTTGCATGGAA
* * * *
2193268 ATCTTTTCTTTGCCCTATTTTACATAATATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATT
65 ATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * *
2193333 CTAGTAACAATCACCATTATTTTCAAGATTGGGAAGCAAAAACACAATCCATTCATTAGGTTACT
130 CTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACA
* * *
2193398 TGATATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACCTTTTTTGATAGAATCAAAGT
195 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCA-CGTTTTTGATAGAATCAAAGT
* * * *
2193463 TTGTCTCGTAAATAAGGTAGACATGAATACCCATACTATTCCCCATTCTTTTCAAGATTTAGCAC
259 TTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCAC
* *
2193528 CTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTTTT
324 CTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAGAAAAGGCTTTT
* *
2193593 TTCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
389 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
2193658 AACTTCATTCAATTTGTGTTT
454 AACTTCATTCATTTTGTGATT
* *
2193679 AGGCACTACAAACACATTCTCTGCATTACAG-TAAACAAAATTTG-TGATATTCTTTTGCGTGGA
1 AGGCACTATAAACACATTCTCT-CATTA-AGATAAACAAAATTTGATGATATTCTTTTGCATGGA
* * *
2193742 AATCATTTCTTTGCCCTATATTACTTAAAATCAAAGCTCATCCCTTTAAATAAGACAAGCATCAA
64 AATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCC-TTAAATAAGACAAGCATCGA
* *
2193807 TTCTAGTAACAATCTCCATTATTTTCAA-ATTGGGAACTAAAAACAAATTCCATTCATTAGGATA
128 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGAT-
** ** *
2193871 CACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-T--A-G-AATACATTGAATCAA
192 -ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACGTTTTTGATAGAATCAA
* * * * *
2193931 AGTTTGTCTCTTAAATAAGGCAAACATCAATACTCATACTAATT-CCCTTTCTTTTCAGGATTCG
256 AGTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACT-ATTCCCCATTCTTTTCAAGATTTG
* ** * * * * *
2193995 ACACCAAAAACATAGTCTTCTCAATAAGG-TACAAGATATTGATGCTCTGGTTTCACAGGAAAGG
320 GCACCTTAAACATAGTCTTCTC-ATTAGGATACACGATATTGGTGCTTTGGTTTCACAGAAAAGG
* * * * * * * *
2194059 CTTGTTCCTCACTAATTTTTGTAAAGTCTAAGTTCATGCTTCAAATGAGCCAAACGTGGGTTCTA
384 CTTTTTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* *
2194124 GTACT-AATCTTCATTCATTTTGTAATT
448 GTAATGAA-CTTCATTCATTTTGTGATT
* * * ** * * *
2194151 AGGCACTATAAACACATTCTCCTTAATAAGATTAATGATA-TTGATAATTTTCTTTTGCATGGAA
1 AGGCACTATAAACACATTCT-CTCATTAAGATAAACAAAATTTGATGATATTCTTTTGCATGGAA
* * * *
2194215 ATCTTTTCTTTGCCCTATTTTACTTAATATCATAGTTCATCCCTCAAATAAGACAAGCATCGATT
65 ATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
** *** * *
2194280 CTCCTAACAATCTCCATTCGATTCAAGGTTGGGATCCAAAAACACATTCTC-TTCATTAGGATAC
130 CTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTC-CATTCATTAGGATAC
* *
2194344 AAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCATCGTTTTTTATAGAATCAAA
194 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCCA-CGTTTTTGATAGAATCAAA
* *
2194408 GTTTGTCTCTTAAATAAGGCAGACATGTATACTCATACTATTCCCCATTCTTTTCATGATTTGGC
257 GTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGC
* * *
2194473 ACTTTAAACATAGTCTTCTCATTAGGATACTCGATATTGGTGCATTGGTTTCACAGAAAAGGCTT
322 ACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAGAAAAGGCTT
* * *
2194538 TTTTCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGTAA
387 TTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
2194603 TGAACGTCATTCAATTTGTGTTT
452 TGAACTTCATTCATTTTGTGATT
* *
2194626 AGGCACTACAAACACATTCTCTGCATTACAG-TAAACAAAATTTG-TGATATTCTTTTGCGTGGA
1 AGGCACTATAAACACATTCTCT-CATTA-AGATAAACAAAATTTGATGATATTCTTTTGCATGGA
* *
2194689 AATCATTTCTTCGCCCTATTTTACTTAAAATCAAAGCTCATCCCTTAAATAAGACAAGCATCGAT
64 AATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * *
2194754 TCTAGTAACAATCTCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATAC
129 TCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATAC
* * * *
2194819 ATGGCCTTGGTGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCACCGTTTTTGATAGAATTAAA
194 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCCA-CGTTTTTGATAGAATCAAA
* *
2194883 GTTTGTCTCTTAAATAAGGCAGACATGAATGCTCAAACTATTCCCCATTCTTTTCAAGATTTGGC
257 GTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGC
* * * * ** *
2194948 ACCCTAAACATAGTATTCTCATTAGGATACCCGATATCGGCACTTTGGTTTCACA-AGAAAGACT
322 ACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAGA-AAAGGC-
* * * *
2195012 TTTTTTCCACTAATTTTTCTAAAGTCTAAGTTCGTGCCTCGAATGAGACAAACCTGGATTCTAGT
385 TTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * *
2195077 AACGAACTTCATTTATTTTGTGTTT
450 AATGAACTTCATTCATTTTGTGATT
* * * *
2195102 AGGCACTATAAACACATTCTCCTCATTATGATAAACGATA-TTCATGATATTCTTTTGCATGGAA
1 AGGCACTATAAACACATTCT-CTCATTAAGATAAACAAAATTTGATGATATTCTTTTGCATGG-A
* * *
2195166 AAT-GTTTCTTTACCCTATTTTACTTAAAATCAAAGTTCA-CCTCTTAAATATGACAAGCATCGA
64 AATCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGA
** * * *
2195229 TTCTCTTAGCAATCTCTAATATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
128 TTCTAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATA
** ** * * * *
2195294 TGTGGTATTGATCCTTTGGAGTCGCAAGGAAAGCTTTTACTTCCACCATTTTTGATAGAATCAAA
193 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCA-CGTTTTTGATAGAATCAAA
* * * *
2195359 GTTTGTCTCTTAAATAAGGTAAACATGAATACTTATACTATT-CCCATTCTTTTCAAGATATGGC
257 GTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGC
** *
2195423 ACCTTAAACATAGTCTTCTCATTAGGATACACGACGTTGGTGCTTTGGTTTCGCA-AGAAAGGCT
322 ACCTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAGA-AAAGGCT
* * * *
2195487 TTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGCCAAACATGGGTTCTAG-
386 TT-TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
*
2195551 AATTGATCTTCATTCATTTTGTGATT
450 AA-TGAACTTCATTCATTTTGTGATT
2195577 AGGCACTATAAA-ACCATTCTCCTCATTAAGAT
1 AGGCACTATAAACA-CATTCT-CTCATTAAGAT
2195609 CTGATGACAA
Statistics
Matches: 2445, Mismatches: 355, Indels: 131
0.83 0.12 0.04
Matches are distributed among these distances:
461 131 0.05
462 49 0.02
463 83 0.03
464 126 0.05
465 9 0.00
466 1 0.00
469 1 0.00
470 39 0.02
471 165 0.07
472 258 0.11
473 156 0.06
474 90 0.04
475 796 0.33
476 496 0.20
477 45 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
AGGCACTATAAACACATTCTCTCATTAAGATAAACAAAATTTGATGATATTCTTTTGCATGGAAA
TCATTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
TAGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCATTCATTAGGATACAT
GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACGTTTTTGATAGAATCAAAGTTT
GTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTTGGCACCT
TAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAGAAAAGGCTTTTTT
CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAA
CTTCATTCATTTTGTGATT
Found at i:2197266 original size:475 final size:474
Alignment explanation
Indices: 2196313--2200487 Score: 5220
Period size: 475 Copynumber: 8.8 Consensus size: 474
2196303 ATCAAGATCT
* * * * * *
2196313 ATGATATTGATGACTGTCTTTTGCATGAAAATCTTTTCTTTGCCGTATTTTCCGTAAAATCAAAG
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTATTTTACTTAAAATCAAAG
* * * *
2196378 TTCATTTCTAAAATAAGACAAGCATCGATTCTCATAACAATCTCCGTTCTTCTCAAGATTGGGAT
65 TTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAT
* * *
2196443 CCAAAGACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGGTAAGCTTT
130 CCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA-GAAAGCTTT
* * *
2196508 TCTTTCCATCATTTTTGATAGAATCCAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATA
194 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATA
* * * * * ** * * *
2196573 CTAATCCCCTTTCTTTTCAGGTTTAGACACCAAAAACATAGACTTCTCAATAGGATACAAGATAT
259 CTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATAT
* ** * * * * * * *
2196638 TGATGCTTTGGTTTCATAGGAAAGACTTGTTCCCCACTAATTTTTATAAAGTCTAAGTTCATGCC
324 TGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
*
2196703 TCAAATGAGCCAAACGTGGGTTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
389 TCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
2196768 ACATTCTTCTCAATAAGATTA
454 ACATTCTCCTCATTAAGATTA
* * *
2196789 ATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATTTTACTTAATATCATAGT
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATTTTACTTAAAATCAAAGT
* * * ** *
2196854 TCATCTCTTAAATAAGACACGCATCAATTCTCATAACAATCTGCATTCGATTCAAGAATGGGATC
66 TCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATC
* * * *
2196919 CAAAAACACATTCTCTTCATTAGGATACAAGACATTGATGCCTTGGCGTCGCAAGAAATGCTTTA
131 CAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-GCTTTT
* * * * * *
2196984 CTTTCCACCGTTTTTTATAGAATCAACGTTTGTCTCTTAAATAAGACAAACCTGAATACTCGTAT
195 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATAC
* * * * *
2197049 TGTTCCCCATTCTTTTCAAGATTAGGTACTTTAAACATAGTCTTCTCATTAGGATACATGATTTT
260 TATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATT
* * * * **
2197114 TGTGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTTGCAAAGTCCAAGTTCGTATCT
325 GGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * *
2197179 CAATTGAGCCAAACGTGGGTTCTAGTACTGATCTTCATTCTTTTTGTGATTAGGCACTATAAACA
390 CAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
*
2197244 CATTCTCCTCAATAAGATTA
455 CATTCTCCTCATTAAGATTA
* * * * * * * *
2197264 ATGGTATTAATGA-TTTCTTTTACATGGAAATCTTCTCTTTGCCAATATTTTACAT-ATATCATA
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-CC-CTATTTTACTTAAAATCAAA
* * * ** * * *
2197327 GTTCATC-CTTTACACAAGACAAGCGTCGATTCTTGTGACAATCTCCATTCTTTTCAAGATTCGA
64 GTTCATCTC-TTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGG
* **
2197391 AACC-AAAACACATTCGATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
128 ATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAGCT
* * * *
2197455 TCTCTTTCTACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGGCAGACATGAATACTCA
192 TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCA
* * * *
2197520 TACTATTCCCCATCCTTTTCAAGATTTGGCACCTTCAACATAGTCTTCTCATTAGGATACTCGAT
257 TACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGAT
* * *
2197585 AGTGGTG-TGTTGGTTTCGCAAGAAAGTCTTTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCAT
322 ATTGGTGCT-TTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * * * *
2197648 GCCTCAAATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGTTTAGGCACTACA
386 GCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
2197713 AACACATTCTCCTCATTACGATAA
451 AACACATTCTCCTCATTAAGATTA
* * * * * *
2197737 ATGATATTCATAATATTCTTTTGCGTGGAAATCGTTTT-TTAACCCTATTTTACTAAAAATCAAA
1 ATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTT-TCCCTATTTTACTTAAAATCAAA
*
2197801 GTTCATCTCTTAAATAAGACAAGCATCGATTCT-AGTAACAATCTCCATTCTTTTCAAGATTGAG
64 GTTCATCTCTTAAATAAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGG
* *
2197865 AACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGC
128 ATCCAAAAACACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAGC
* * * *
2197929 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAGTAAGGCAGACATGAATACTC
191 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTC
* * *
2197994 ATACTATTCCCCATTCTTTTCAAAATTTGGCACCCTAAACATAGTCTTCTCATTAGGATAC-CTG
256 ATACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACAC-G
* ** **
2198058 ATATTGGTGCTTTGGTTTCACAAGAAAGAATTTTTTTTCACCAATTTTTGTAAAGTCTAAGTTCG
320 ATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * * *
2198123 TGCCTCAATTGAGACAAACCTGGATTCTAGTAATGAACTTCATAT-ATTTTGTGTTTAGGCACTA
385 TGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCAT-TCATTTTGTGATTAGGCACTA
* * *
2198187 TAAACACATTCTTCTCATTACGATAA
449 TAAACACATTCTCCTCATTAAGATTA
* * * * *
2198213 ATGATATTCATGATATTCTTTTGCATGGAAA-ATGTT-TTGCCCTATTTTACTTAAAATCAAAGT
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATTTTACTTAAAATCAAAGT
* * * * * *
2198276 TCATCCCTTAAATATGACAAACATCGATTCTCTTAACAATCTCCATTATTTTCAAGATTGGGAAC
66 TCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATC
* * * *
2198341 CAAAAACACATTC-CATTCATTAGGATACAAGGCATTGAT-CGTTTGGTGTTGTAAGAAAAGCTT
131 CAAAAACACATTCTC-TTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAG-AAAGCTT
*
2198404 TTAC-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTC-
193 TT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCA
*
2198467 TGACTATT-CCCATTCTTTTCAAGA-TATGGCACCTTAAACATAGTATTCTCATTAGGATACACG
257 T-ACTATTCCCCATTCTTTTCAAGATTA-GGCACCTTAAACATAGTCTTCTCATTAGGATACACG
* * *
2198530 ATAGTGGCGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
320 ATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
*
2198595 TGCCTCAAATGAGCCAAACGT-GAGTTCTAGTATTGATCTTCATTCATTTTGTGAATAGGCACTA
385 TGCCTCAAATGAGCCAAACGTGGA-TTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTA
* * *
2198659 TAAACACATTCTCCTCGTTAATATTT
449 TAAACACATTCTCCTCATTAAGATTA
* * * *
2198685 ATGATATTGATGACTGTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCAGTAAAATCAAA
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTATTTTAC-TTAAAATCAAA
* * ** *
2198750 GTTCATATCTAAAATAAGACAAGCATCGATTCTGGTAACAATCTCCATTCTTCTCAAGATTGGGA
64 GTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGA
2198815 TCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGGAAAGCTT
129 TCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA-GAAAGCTT
* *
2198880 TTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACT-TT
193 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAT
*
2198944 ACTATTCCCCATTCTTTTCAAGATTTGGCACCTTAAACATAGTC-T-TC-TTAGGATACACGATA
258 ACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATA
* * * *
2199006 TCGGTGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCTATTTTTGTAAAGTCTAAGTTCATGC
323 TTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * *
2199071 CTCAAATGAGCCAAACGCGGATTCTAGTATTAATCTTCTTTTATTTTGTGATTAGGCACTATAAA
388 CTCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAA
*
2199136 CACATTCTCCTCATTATGATTA
453 CACATTCTCCTCATTAAGATTA
* * * * * * **
2199158 ATGATTTTGAAGATTTTCTTTTGCACGAAAATATTTTCTTTGCCTATTTTACTTAAAATTGAAGT
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATTTTACTTAAAATCAAAGT
* * * *
2199223 TCATCCCTTAAATAAGACAAGCATCGATTATCGTAATAATCTCCATTCTTTTCAAGATTGGGATC
66 TCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATC
* ** * * *
2199288 GAGGAACACATTCTTTTCATTAGGATACTTGACATTGATGCGTTGGTGTCGCAAGAAGAGCTTTT
131 CAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA-AGCTTTT
* * * *
2199353 CTTTCCACCGTTTTCGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATAT
195 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATAC
* * * * *
2199418 TATTCCCTATTCTTTACAAGATTAGGTACTTTAAACATAGTCTTCTCATTAGGATACATGATATT
260 TATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATT
* * *
2199483 GGTGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGTTCATGCCT
325 GGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* *** * *
2199548 CAAATCAGCCAAACAAAGATTCTTGTA-T--T-TTCATTCATTTTGTGATTAGGCACTATAAGCA
390 CAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
2199609 CATTCTCCTCATTAGGATAA
455 CATTCTCCTCATTAAGATTA
* * * * ** ** * *
2199629 AAGATATCGATAATTTTCTTTTGCATGAAAATCTTTTCTTGGCCTATTTTACTTAGCAGCATAGT
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATTTTACTTAAAATCAAAGT
* * *
2199694 TCATCCCTTAAATAAGATAAGCAACGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATC
66 TCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATC
*
2199759 CAAAAACACATTTTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTT
131 CAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-GCTTTT
* * *
2199824 CTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAA-G-ACACATGAATACTCGTAC
195 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATAC
* *
2199887 TATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTCTTCGCATTAGGATACACGATATT
260 TATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATT
** * * * *
2199952 GGTGCTTTGACTTCACAGGAAAGGCTTTTTTCCC-CTCAATTTTTGTAAGGTCAAAGTTCGTGCC
325 GGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC-CAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
2200016 TCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCATACATTTTGTGATTAGGCACTAAAAAA
389 TCAAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
2200081 ACATTATCCTCGTTAAGATTA
454 ACATTCTCCTCATTAAGATTA
* ** *
2200102 ATGATATTGATGATTTTCCTTTATATGAAAATCTTTTCTTTGCCCTATTTT-CGTTAAAATCATA
1 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTATTTTAC-TTAAAATCA-A
* * * * *
2200166 A-TTCAT-TCCATAAATTAGACAAGCATCGATTCTCATAACAATATCCATTATTTTCAACA-TGG
63 AGTTCATCT-CTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGG
* * * * * *
2200228 GATCCAAAAACAAACTCTATTCATTAGGAAACATGACATTGATGCTTTGGGGTCACAACGAAAGC
127 GATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA-GAAAGC
* * * * *
2200293 TTTT-TTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATAGTT
191 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTC
* ** * *
2200357 ATACTGTTCCCCATTCTTTTCAAGATTAGGCATTTTAAACATAATCTTCTCATAAGGATACACGA
256 ATACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGA
* ** *
2200422 TATTGATGCTTTGGTTT-GACAAGAAAGGCTTGCTTCCCACCAATTTTTGTAAAATCTAAGTTCG
321 TATTGGTGCTTTGGTTTCG-CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
2200486 TG
385 TG
2200488 TTTATGGGGC
Statistics
Matches: 3214, Mismatches: 427, Indels: 118
0.86 0.11 0.03
Matches are distributed among these distances:
469 151 0.05
470 5 0.00
471 439 0.14
472 296 0.09
473 648 0.20
474 508 0.16
475 764 0.24
476 398 0.12
477 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATTTTACTTAAAATCAAAGT
TCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATC
CAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAGCTTTTC
TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACT
ATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATTG
GTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
AAATGAGCCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
ATTCTCCTCATTAAGATTA
Found at i:2198747 original size:949 final size:951
Alignment explanation
Indices: 2196313--2200484 Score: 5226
Period size: 949 Copynumber: 4.4 Consensus size: 951
2196303 ATCAAGATCT
* * * * * * * *
2196313 ATGATATTGATGACTGTCTTTTGCATGAAAATCTTTTCTTTGCCGTATTTTCCGTAAAATCAAAG
1 ATGATATTGATGATTTTCTTTTACATGGAAATATTTTCTTTGCCCTATTTTACTTAAAATCAAAG
** * * *
2196378 TTCATTTCTAAAATAAGACAAGCATCGATTCTCATAACAATCTCCGTTCTTCTCAAGATTGGGAT
66 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAT
* * **
2196443 CCAAAGACACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGGTAAGCTT
131 CCAAAAACACATTC-CATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
2196507 TTCTTTCCATCATTTTTGATAGAATCCAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAT
195 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAT
* * * * * ** * * *
2196572 ACTAATCCCCTTTCTTTTCAGGTTTAGACACCAAAAACATAGACTTCTCAATAGGATACAAGATA
260 ACT-ATTCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATA
* ** * * * * *
2196637 TTGATGCTTTGGTTTCATAGGAAAGACTTGTTCCCCACTAATTTTTATAAAGTCTAAGTTCATGC
324 TTGGTGCTTTGGTTTCGCAAGAAAGGCTT-TTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
*
2196702 CTCAAATGAGCCAAACGTG-GGTTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA
388 CTCAAATGAGCCAAACGTGAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
2196766 ACACATTCTTCTCAATAAGATTAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-
453 ACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * *
2196830 CCCTATTTTACTTAATATCATAGTTCATCTCTTAAATAAGACACGCATCAATTCTCATAACAATC
518 CCCTATTTTACTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATC
* ** * *
2196895 TGCATTCGATTCAAGAATGGGATCCAAAAACACATTCTCTTCATTAGGATACAAGACATTGATGC
583 TCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGC
* * * * * *
2196960 CTTGGCGTCGCAAGAAATGCTTTACTTTCCACCGTTTTTTATAGAATCAACGTTTGTCTCTTAAA
648 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
2197025 TAAGACAAACCTGAATACTCGTATTGTTCCCCATTCTTTTCAAGATTAGGTACTTTAAACATAGT
713 TAAGGCAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGT
* * * * *
2197090 CTTCTCATTAGGATACATGATTTTTGTGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATT
778 CTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATT
* * ** * * * * *
2197155 TTTGCAAAGTCCAAGTTCGTATCTCAATTGAGCCAAACGTGGGTTCTAGTACTGATCTTCAT-TC
843 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACCTGGATTCTAGTAATGAACTTCATAT-
* *
2197219 TTTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAAGATTA
907 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTA
* * * * * * * *
2197264 ATGGTATTAATGA-TTTCTTTTACATGGAAATCTTCTCTTTGCCAATATTTTACAT-ATATCATA
1 ATGATATTGATGATTTTCTTTTACATGGAAATATTTTCTTTGCC-CTATTTTACTTAAAATCAAA
* * * * ** * * *
2197327 GTTCATCCTTTACACAAGACAAGCGTCGATTCTTGTGACAATCTCCATTCTTTTCAAGATTCGAA
65 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGA
* *
2197392 ACC-AAAACACATTCGATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
130 TCCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
2197456 CTCTTTCTACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGGCAGACATGAATACTCAT
195 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAT
* * * *
2197521 ACTATTCCCCATCCTTTTCAAGATTTGGCACCTTCAACATAGTCTTCTCATTAGGATACTCGATA
260 ACTATT-CCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATA
* * *
2197586 GTGGTG-TGTTGGTTTCGCAAGAAAGTCTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCATGC
324 TTGGTGCT-TTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
2197650 CTCAAATGAGACAAACATG-GATTCTAGTAATGAACTTCATTCATTTTGTGTTTAGGCACTACAA
388 CTCAAATGAGCCAAACGTGAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
2197714 ACACATTCTCCTCATTACGATAAATGATATTCATAATATTCTTTTGCGTGGAAATCGTTTT-TTA
453 ACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTT
* *
2197778 ACCCTATTTTACTAAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCT-AGTAACAA
517 GCCCTATTTTACTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCA-TAACAA
* *
2197842 TCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGA
581 TCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTC-TTCATTAGGATACATGACATTGA
* * *
2197906 TGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTT
645 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * * *
2197971 AAGTAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTTCAAAATTTGGCACCCTAAACAT
710 AAATAAGGCAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACAT
** **
2198036 AGTCTTCTCATTAGGATAC-CTGATATTGGTGCTTTGGTTTCACAAGAAAGAATTTTTTTTCACC
775 AGTCTTCTCATTAGGATACAC-GATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACC
* *
2198100 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAACCTGGATTCTAGTAATGAACTTCA
839 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACCTGGATTCTAGTAATGAACTTCA
* * * *
2198165 TATATTTTGTGTTTAGGCACTATAAACACATTCTTCTCATTACGATAA
904 TATATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTA
* * * *
2198213 ATGATATTCATGATATTCTTTTGCATGGAAA-A-TGT-TTTGCCCTATTTTACTTAAAATCAAAG
1 ATGATATTGATGATTTTCTTTTACATGGAAATATTTTCTTTGCCCTATTTTACTTAAAATCAAAG
* * * * *
2198275 TTCATCCCTTAAATATGACAAACATCGATTCTCTTAACAATCTCCATTATTTTCAAGATTGGGAA
66 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAT
* * * *
2198340 CCAAAAACACATTCCATTCATTAGGATACAAGGCATTGAT-CGTTTGGTGTTGTAAGAAAAGCTT
131 CCAAAAACACATTCCATTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTT
*
2198404 TTAC-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTC-
195 TT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCA
*
2198467 TGACTATTCCCATTCTTTTCAAGA-TATGGCACCTTAAACATAGTATTCTCATTAGGATACACGA
259 T-ACTATTCCCATTCTTTTCAAGATTA-GGCACCTTAAACATAGTCTTCTCATTAGGATACACGA
* * *
2198531 TAGTGGCGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
322 TATTGGTGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
*
2198596 GCCTCAAATGAGCCAAACGTGAG-TTCTAGTATTGATCTTCATTCATTTTGTGAATAGGCACTAT
386 GCCTCAAATGAGCCAAACGTGAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
* * ** * *
2198660 AAACACATTCTCCTCGTTAATATTTATGATATTGATGACTGTCTTTTGCATGGAAATCTTTTCTT
451 AAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * **
2198725 TGCCCTATTTTTCAGTAAAATCAAAGTTCATATCTAAAATAAGACAAGCATCGATTCTGGTAACA
516 TGCCCTATTTTAC-TTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACA
*
2198790 ATCTCCATTCTTCTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGA
580 ATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGA
* *
2198855 TGCTTTGGTGTCGCAAGGAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTT
645 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* *
2198920 AAATAAGGCAAACATGAATACT-TTACTATTCCCCATTCTTTTCAAGATTTGGCACCTTAAACAT
710 AAATAAGGCAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACAT
* * * *
2198984 AGTC-T-TC-TTAGGATACACGATATCGGTGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCT
775 AGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCA
* *
2199046 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACGC-GGATTCTAGT-ATTAATCTTC
840 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAAC-CTGGATTCTAGTAATGAA-CTTC
* * *
2199109 TTTTATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTATGATTA
903 ATATATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTA
* * * * * **
2199158 ATGATTTTGAAGATTTTCTTTTGCACGAAAATATTTTCTTTG-CCTATTTTACTTAAAATTGAAG
1 ATGATATTGATGATTTTCTTTTACATGGAAATATTTTCTTTGCCCTATTTTACTTAAAATCAAAG
* * *
2199222 TTCATCCCTTAAATAAGACAAGCATCGATTATCGTAATAATCTCCATTCTTTTCAAGATTGGGAT
66 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAT
* ** ** * * *
2199287 CGAGGAACACATTCTTTTCATTAGGATACTTGACATTGATGCGTTGGTGTCGCAAGAAGAGCTTT
131 CCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * *
2199352 TCTTTCCACCGTTTTCGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATA
196 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATA
* * * * *
2199417 TTATTCCCTATTCTTTACAAGATTAGGTACTTTAAACATAGTCTTCTCATTAGGATACATGATAT
261 CTATTCCC-ATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATAT
* *
2199482 TGGTGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCATCAATTTTTGTAAAGTCTAAGTTCATGCC
325 TGGTGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
* ** * *
2199547 TCAAATCAGCCAAAC-AAAGATTCTTGTA-T--T-TTCATTCATTTTGTGATTAGGCACTATAAG
389 TCAAATGAGCCAAACGTGAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * *
2199607 CACATTCTCCTCATTAGGATAAAAGATATCGATAATTTTCTTTTGCATGAAAATCTTTTC-TTGG
454 CACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
** * * * * *
2199671 CCTATTTTACTTAGCAGCATAGTTCATCCCTTAAATAAGATAAGCAACGATTCTCATAACAATCT
519 CCTATTTTACTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCT
*
2199736 CCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTCTTCATTAGGATACATGACATTGATGCT
584 CCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCT
* *
2199801 TTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAAT
649 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
2199866 AA-G-ACACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACTTTAAACATAGTC
714 AAGGCAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTC
* ** *
2199929 TTCGCATTAGGATACACGATATTGGTGCTTTGACTTCACAGGAAAGGCTTTTTTCCC-CTCAATT
779 TTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCAC-CAATT
* * * ** * *
2199993 TTTGTAAGGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTTTTGATCTTCATACA
843 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACCTGGATTCTAGTAATGAACTTCATATA
* * * *
2200058 TTTTGTGATTAGGCACTAAAAAAACATTATCCTCGTTAAGATTA
908 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTA
* * * *
2200102 ATGATATTGATGATTTTCCTTTATATGAAAATCTTTTCTTTGCCCTATTTT-CGTTAAAATCATA
1 ATGATATTGATGATTTTCTTTTACATGGAAATATTTTCTTTGCCCTATTTTAC-TTAAAATCA-A
* * * * * *
2200166 A-TTCATTCCATAAATTAGACAAGCATCGATTCTCATAACAATATCCATTATTTTCAACA-TGGG
64 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGG
* * * * * *
2200229 ATCCAAAAACAAACTCTATTCATTAGGAAACATGACATTGATGCTTTGGGGTCACAACG-AAAGC
129 ATCCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA-GAAAAGC
* * * * *
2200293 TTTT-TTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATAGTT
193 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTC
* ** * *
2200357 ATACTGTTCCCCATTCTTTTCAAGATTAGGCATTTTAAACATAATCTTCTCATAAGGATACACGA
258 ATACTATT-CCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGA
* * *
2200422 TATTGATGCTTTGGTTT-GACAAGAAAGGCTTGCTTCCCACCAATTTTTGTAAAATCTAAGTTC
322 TATTGGTGCTTTGGTTTCG-CAAGAAAGGCTT-TTTCCCACCAATTTTTGTAAAGTCTAAGTTC
2200485 GTGTTTATGG
Statistics
Matches: 2781, Mismatches: 389, Indels: 110
0.85 0.12 0.03
Matches are distributed among these distances:
940 12 0.00
941 44 0.02
942 173 0.06
943 175 0.06
944 317 0.11
945 233 0.08
946 18 0.01
947 350 0.13
948 579 0.21
949 759 0.27
950 102 0.04
951 19 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (951 bp):
ATGATATTGATGATTTTCTTTTACATGGAAATATTTTCTTTGCCCTATTTTACTTAAAATCAAAG
TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAT
CCAAAAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATA
CTATTCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTTCTCATTAGGATACACGATATT
GGTGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
AAATGAGCCAAACGTGAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
CATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
TATTTTACTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCC
ATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
GGCAAACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGCACCTTAAACATAGTCTT
CTCATTAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACCTGGATTCTAGTAATGAACTTCATATATTT
TGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTA
Found at i:2199510 original size:159 final size:158
Alignment explanation
Indices: 2196460--2200484 Score: 1130
Period size: 158 Copynumber: 25.5 Consensus size: 158
2196450 CACATTCTCT
* * * * *
2196460 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGGTAA-GCTTTTCTTTCCATCATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTTCTTTCCACCATTTTT
* ** * * * *
2196524 GATAGAATCCAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTAATCCCCTTTCTTT
65 GATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATA-TTATTCCCATTCTTT
* * * * * * *
2196589 TCAGGTTTAGACACCAAAAACATAGACTTC
129 TCAAGATTAGGCACTATAAACACAGTCTTC
* * ** * * * *
2196619 TCAATAGGATACAAGATATTGATGCTTTGGTTTCATAGGAAAGACTTGTTC--CCCACTAATTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT-TTCTTTCCAC-CATTTT
* * * * * ** * *
2196682 T-ATA-AAGTCTAAGTTCATGC-CTCAAATGAGCCAAACGTGGGTTCT-AGTATTGA-TCTTCAT
64 TGATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCA-TATT-ATTC-CCAT
** *
2196742 TCATTTT-GTGATTAGGCACTATAAACACATTCTTC
124 TC-TTTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * * ** * * * *
2196777 TCAATAAGATTA-ATGATGTTGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTCC-CTATTTT
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAGGCTTTTCTTTCCACCATTTT
*** * ** * * ** * * *
2196839 ACTTA-ATATCATAGTTCATCTCTTAAATAAGACACGCATCAATTCTCATAACAATCTGCATTCG
64 TGATAGA-ATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATTC-CCATTCT
* * * * * *
2196903 ATTCAAGAAT-GGGATCCAAAAACACATTC-TC
127 TTTCAAGATTAGGCA-CTATAAACACAGTCTTC
* * * ** * * *
2196934 TTCATTAGGATACAAGACATTGATGCCTTGGCGTCGCAAGAAATGCTTTACTTTCCACCGTTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTT
* * ** * * *
2196999 TATAGAATCAACGTTTGTCTCTTAAATAAGACAAACCTGAATACTCGTATTGTTCCCCATTCTTT
65 GATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATT-CCCATTCTTT
* * *
2197064 TCAAGATTAGGTACTTTAAACATAGTCTTC
129 TCAAGATTAGGCACTATAAACACAGTCTTC
* * *
2197094 TCATTAGGATACATGATTTTTG-TGCTTTGGTTTCGCAAGAATGGCTTTT-TTCCCACCAATTTT
1 TCATTAGGATACATGA-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACC-ATTTT
* * * * * * * * * ** * * *
2197157 TGCA-A-AGTCCAAGTTCGTATCTCAATTGAGCCAAACGTGGGTTCT-AGTACTGA-TCTTCATT
64 TG-ATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCA-TA-TTATTC-CCATT
*** * *
2197218 CTTTTTGTGATTAGGCACTATAAACACATTCTCC
125 CTTTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * * * * ** * * * **
2197252 TCAATAAGATTA-ATGGTATTAATGATTT-CTTTTACATGGAAA-TCTTCTCTTTGCCAATATTT
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CCACCATTT
** * * * * * * * ** * *
2197314 TACATA-TATCATAGTTCATC-CTTTACACAAGACAAGCGTCG-ATTCTTGTGA-CAATCTCCAT
63 TTGATAGAATCAAAGTTCATCTC-TTAAATAAGACAAACAT-GAATACTCAT-ATTATTC-CCAT
* ** * * *
2197375 TCTTTTCAAGATTCGAAACCA-AAACACATTCGAT-
124 TCTTTTCAAGATTAGGCACTATAAACACAGTC-TTC
* * * * * * *
2197409 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTCTCTTTCTACCGTTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTTG
** * * * *
2197474 ATAGAATCAAAGTTTGTCTCTTAAATAAGGCAGACATGAATACTCATACTATTCCCCATCCTTTT
66 ATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATT-CCCATTCTTTT
* * *
2197539 CAAGATTTGGCACCT-TCAACATAGTCTTC
130 CAAGATTAGGCA-CTATAAACACAGTCTTC
* * *
2197568 TCATTAGGATAC-TCGATAGTGGTG-TGTTGGTTTCGCAAGAAAGTC-TTT-TTTCCACCAATTT
1 TCATTAGGATACAT-GATATTGATGCT-TTGGTTTCGCAAGAAAGGCTTTTCTTTCCACC-ATTT
* * * * * *
2197629 TTG-TA-AAGTCTAAGTTCATGC-CTCAAATGAGACAAACATGGATTCT-AGTAATGAACTT--C
63 TTGATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCA-T-AT-TA-TTCCC
** * * * *
2197688 ATTCATTTT-GTGTTTAGGCACTACAAACACATTCTCC
122 ATTC-TTTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * ** * * ** * * * *
2197725 TCATTACGATAAATGATATTCATAATATT-CTTTTGCGTGGAAA-TCGTTT-TTT-AACCCTATT
1 TCATTAGGATACATGATATTGATGCT-TTGGTTTCGC-AAGAAAGGCTTTTCTTTCCACCAT-TT
* * * ** *
2197786 TT-ACTAAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCG-ATTCT-AGTAACAATCTCCA
63 TTGA-T-AGAATCAAAGTTCATCTCTTAAATAAGACAAACAT-GAATACTCA-TATTATTC-CCA
* * * *
2197848 TTCTTTTCAAGATT-GAGAACCAAAAACACATTCCTT-
123 TTCTTTTCAAGATTAG-GCACTATAAACACAGT-CTTC
* * * *
2197884 TCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTTG
*** * * * *
2197949 ATAGAATCAAAGTTTGCCTCTTAAGTAAGGCAGACATGAATACTCATACTATTCCCCATTCTTTT
66 ATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATT-CCCATTCTTTT
* * ** *
2198014 CAAAATTTGGCACCCTAAACATAGTCTTC
130 CAAGATTAGGCACTATAAACACAGTCTTC
* * * ** *
2198043 TCATTAGGATACCTGATATTGGTGCTTTGGTTTCACAAGAAAGAATTTT-TTTTCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACC-ATTTTT
* * * * * * * * *
2198107 G-TA-AAGTCTAAGTTCGTGC-CTCAATTGAGACAAACCTGGATTCT-AGTAATGAACTT--CAT
65 GATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCA-T-AT-TA-TTCCCAT
* ** * *
2198166 ATATTTT-GTGTTTAGGCACTATAAACACATTCTTC
124 -TCTTTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * * * * * * * * *
2198201 TCATTACGATAAATGATATTCATGATATT-CTTTTGCATGGAAA--ATGTT-TTGCC-CTATTTT
1 TCATTAGGATACATGATATTGATGCT-TTGGTTTCGCA-AGAAAGGCTTTTCTTTCCACCATTTT
*** * * * * * ** * *
2198261 ACTTAAAATCAAAGTTCATCCCTTAAATATGACAAACATCG-ATTCTCTTAACAATCTCCATTAT
64 TGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT-GAATACTCATATTATTC-CCATTCT
* * * * * *
2198325 TTTCAAGATTGGGAACCAAAAACACATTCCAT-
127 TTTCAAGATTAGGCACTATAAACACAGT-CTTC
* ** * *
2198357 TCATTAGGATACAAGGCATTGAT-CGTTTGGTGTT-GTAAGAAAAGCTTTTAC-TTCCACCATTT
1 TCATTAGGATACATGATATTGATGC-TTTGGT-TTCGCAAGAAAGGCTTTT-CTTTCCACCATTT
** * *
2198419 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTC-TGACTATTCCCATTCT
63 TTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCAT-ATTATTCCCATTCT
* *
2198483 TTTCAAGA-TATGGCACCT-TAAACATAGTATTC
127 TTTCAAGATTA-GGCA-CTATAAACACAGTCTTC
* * ** *
2198515 TCATTAGGATACACGATAGTGGCGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACC-ATTTTT
* * * * * * * * *
2198579 G-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACGTGAGTTCT-AGTATTGA-TCTTCATT
65 GATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCA-TATT-ATTC-CCATT
** * * *
2198639 CATTTT-GTGAATAGGCACTATAAACACATTCTCC
125 C-TTTTCAAGATTAGGCACTATAAACACAGTCTTC
* ** ** * * * * * *
2198673 TCGTTAATATTTATGATATTGATGACTGT-CTTTTGCATGGAAA-TCTTTTCTTTGCC-CTATTT
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTCGCA-AGAAAGGCTTTTCTTT-CCACCATTT
* * * * * * ** ** *
2198735 TTCAGTAAAATCAAAGTTCATATCTAAAATAAGACAAGCATCG-ATTCTGGTAACAATCTCCATT
63 TTGA-TAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT-GAATACTCATATTATTC-CCATT
* * * * *
2198799 CTTCTCAAGATT-GGGATCCAAAAACACATTC-TC
125 CTTTTCAAGATTAGGCA-CTATAAACACAGTCTTC
* * * *
2198832 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGGAAA-GCTTTTCTTTCCATCGTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTTCTTTCCACCATTTT
** * * *
2198896 TGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACT-TTACTATTCCCCATTCTT
64 TGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATT-CCCATTCTT
* *
2198960 TTCAAGATTTGGCACCT-TAAACATAGTC-T-
128 TTCAAGATTAGGCA-CTATAAACACAGTCTTC
* * * *
2198989 TC-TTAGGATACACGATATCGGTGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACC-ATTTTT
* * * * ** * * * * *
2199052 G-TA-AAGTCTAAGTTCATGC-CTCAAATGAGCCAAACGCGGATTCT-AGTATTAATCTTC-TTT
65 GATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCA-TATTATTC-CCATTC
*** * *
2199112 TATTTTGTGATTAGGCACTATAAACACATTCTCC
126 T-TTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * * ** * * *** * * *
2199146 TCATTATGATTA-ATGATTTTGAAGATTTTCTTTTGCACGAAAATATTTTCTTTGC-CTATTTTA
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTT
** * ** * * * * * *
2199209 CTTAAAATTGAAGTTCATCCCTTAAATAAGACAAGCATCGATTA-TCGTAATAATCTCCATTCTT
65 GATAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT-GAATACTCATATTATTC-CCATTCTT
* * ** * *
2199273 TTCAAGATT-GGGATCGAGGAACACATTCTTT
128 TTCAAGATTAGGCA-CTATAAACACAGTCTTC
* * * * * *
2199304 TCATTAGGATACTTGACATTGATGCGTTGGTGTCGCAAG-AAGAGCTTTTCTTTCCACCGTTTTC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAG-GCTTTTCTTTCCACCATTTTT
*
2199368 GATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATATTATTCCCTATTCTTT
65 GATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATTCCC-ATTCTTT
* * * *
2199433 ACAAGATTAGGTACTTTAAACATAGTCTTC
129 TCAAGATTAGGCACTATAAACACAGTCTTC
* * * *
2199463 TCATTAGGATACATGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTT-TTCCCATCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCA-CCATTTTT
* * * * * * **
2199527 G-TA-AAGTCTAAGTTCATGC-CTCAAATCAGCCAAACA--AAGATTC-T-TGTATTTTCATTCA
65 GATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCATAT-TATTCCCATTC-
** * * *
2199585 TTTT-GTGATTAGGCACTATAAGCACATTCTCC
126 TTTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * ** ** * * ** ** * **
2199617 TCATTAGGATAAAAGATATCGATAATTTTCTTTTGCATGAAAATCTTTTCTTGGC-CTATTTTAC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTTG
* * * * * * * * * ** *
2199681 TTAGCAGCATAGTTCATCCCTTAAATAAGATAAGCAACG-ATTCTCATAACAATCTCCATTCTTT
66 ATAGAATCAAAGTTCATCTCTTAAATAAGACAAAC-ATGAATACTCATATTATTC-CCATTCTTT
* * * *
2199745 TCAAGATT-GGGATCCAAAAACACA-TTTTC
129 TCAAGATTAGGCA-CTATAAACACAGTCTTC
* * * *
2199774 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTT
** * *
2199839 GATAGAATCAAAGTTTTTCTCTTAAATAAGAC--ACATGAATACTCGTACTATTCCCCATTCTTT
65 GATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATT-CCCATTCTTT
* *
2199902 TCAAGATTAGGCACTTTAAACATAGTCTTC
129 TCAAGATTAGGCACTATAAACACAGTCTTC
* * * ** * * *
2199932 GCATTAGGATACACGATATTGGTGCTTTGACTTCACAGGAAAGGC-TTT-TTTCCCCTCAATTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCAC-C-ATTTT
* * * * * * * * * *
2199995 TG-TA-AGGTCAAAGTTCGTGC-CTCAAATGAGCCAAACGTGGATTCT-AGTTTTGA-TCTTCAT
64 TGATAGA-ATCAAAGTTCAT-CTCTTAAATAAGACAAACATGAATACTCA-TATT-ATTC-CCAT
* ** * * * * *
2200055 ACATTTT-GTGATTAGGCACTAAAAAAACATTATCC
124 TC-TTTTCAAGATTAGGCACTATAAACACAGTCTTC
* * * ** ** * ** *
2200090 TCGTTAAGATTA-ATGATATTGATGATTTTCCTTT-ATATGAAAATCTTTTCTTTGCC-CTATTT
1 TCATTAGGA-TACATGATATTGATG-CTTTGGTTTCGCAAGAAAGGCTTTTCTTT-CCACCATTT
* * * * * * * **
2200152 TCGTTAAAATCATAA-TTCAT-TCCATAAATTAGACAAGCATCG-ATTCTCATAACAATAT-CCA
63 TTGATAGAATCA-AAGTTCATCT-CTTAAATAAGACAAACAT-GAATACTCAT-ATTAT-TCCCA
* * * * * * *
2200213 TTATTTTCAACA-T-GGGATCCAAAAACAAACTCTAT-
123 TTCTTTTCAAGATTAGGCA-CTATAAACACAGTCT-TC
* * ** * * *
2200248 TCATTAGGAAACATGACATTGATGCTTTGGGGTCACAACGAAA-GCTTTT-TTTCTACCGTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTTCTTTCCACCATTTTT
** * * * * *
2200311 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATAGTTATACTGTTCCCCATTCTTT
65 GATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATT-CCCATTCTTT
* * * *
2200376 TCAAGATTAGGCATTTTAAACATAATCTTC
129 TCAAGATTAGGCACTATAAACACAGTCTTC
* * * *
2200406 TCATAAGGATACACGATATTGATGCTTTGGTTT-GACAAGAAAGGC-TTGCTTCCCACCAATTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCG-CAAGAAAGGCTTTTCTTTCCACC-ATTTT
* *
2200469 TG-TAAAATCTAAGTTC
64 TGATAGAATCAAAGTTC
2200485 GTGTTTATGG
Statistics
Matches: 2733, Mismatches: 878, Indels: 511
0.66 0.21 0.12
Matches are distributed among these distances:
153 10 0.00
154 133 0.05
155 106 0.04
156 127 0.05
157 418 0.15
158 1025 0.38
159 756 0.28
160 145 0.05
161 13 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTCTTTCCACCATTTTTG
ATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATATTATTCCCATTCTTTTC
AAGATTAGGCACTATAAACACAGTCTTC
Found at i:2201144 original size:158 final size:159
Alignment explanation
Indices: 2200510--2201159 Score: 386
Period size: 159 Copynumber: 4.1 Consensus size: 159
2200500 AATCTTGCGA
* * *
2200510 TTAGACTTTTCAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAATCCAAAGCACCAATAT--TG
1 TTAGACTCTTCAAAAATTGGTGGAAAGAAAAGCCTTTCTTGCGAATCCAAAGTACCAATATCATG
* * * *
2200572 TTATCCTAAGGAGAAGACTATGTTTACGGGGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
66 -TATCCTAATGAGAAGACTATGTTTACAGTGCCTAATCTTGAAAAGAATGAGGAATAGTATGAG-
** * *
2200637 TTTC-ATGTTTGTCTTATTTAAGAGACCAAC
129 AATCAATGTTTGTCTTATTTAAGACACAAAC
* * * * * * *
2200667 TTTGATTCGTTCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGTGACA-CCAAAGTAACAATGTCA
1 TTAGACTC-TTCAAAAATTGGTGGAAAGAAAAGCCTTTCTTGCGA-ATCCAAAGTACCAATATCA
* ** * * * ** * * * *
2200730 TGCATCCTAACCA-ACGGAATGTGTTTTTAGTTCCCAATCTTGAAATGAAT--GGAGATTGTTAT
64 TGTATCCTAATGAGA-AGACTATGTTTACAGTGCCTAATCTTGAAAAGAATGAGGA-ATAG-TAT
* * ** *
2200792 GAGAATCGATGCTTGTCTTATTTAAGGGATAAAC
126 GAGAATCAATGTTTGTCTTATTTAAGACACAAAC
* * * * * * *** * **
2200826 TTTGA-TATT-AATTAAAATGG-GGCAAAGAAAAG-ATTTCCATG-TAAAAAAAATTCATTAATA
1 TTAGACTCTTCAA--AAATTGGTGG-AAAGAAAAGCCTTT-CTTGCGAATCCAAAGT-ACCAATA
* * * * * ** ** * *
2200886 TCATTTATCCTAATGAGGAGAAC-GTCTTTATAGTGCCTACGC-AAAAAATGAATGAAG-ATCAT
61 TCATGTATCCTAATGAGAAG-ACTATGTTTACAGTGCCTAATCTTGAAAA-GAATGAGGAAT-AG
* * * *
2200948 TACT-AGAATCAATGTTTGTCTCATTTGAGGCACGAAC
123 TA-TGAGAATCAATGTTTGTCTTATTTAAGACACAAAC
* * *
2200985 TTAGACTCTGCAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAATCCAAAGTACCAATATCGTG
1 TTAGACTCTTCAAAAATTGGTGGAAAGAAAAGCCTTTCTTGCGAATCCAAAGTACCAATATCATG
2201049 TATCCTAATGAGAAGACTATGTTTACAGTGCCTAATCTTGAAAAGAATGAGGAATAGTATGAGTA
66 TATCCTAATGAGAAGACTATGTTTACAGTGCCTAATCTTGAAAAGAATGAGGAATAGTATGAG-A
*
2201114 TTC-ATGTTTGTCTTATTTAAGACACAAAC
130 ATCAATGTTTGTCTTATTTAAGACACAAAC
* *
2201143 TTTGATTCTATCAAAAA
1 TTAGACTCT-TCAAAAA
2201160 GGATAAGCCT
Statistics
Matches: 358, Mismatches: 101, Indels: 66
0.68 0.19 0.13
Matches are distributed among these distances:
156 2 0.01
157 21 0.06
158 143 0.40
159 181 0.51
160 8 0.02
161 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (159 bp):
TTAGACTCTTCAAAAATTGGTGGAAAGAAAAGCCTTTCTTGCGAATCCAAAGTACCAATATCATG
TATCCTAATGAGAAGACTATGTTTACAGTGCCTAATCTTGAAAAGAATGAGGAATAGTATGAGAA
TCAATGTTTGTCTTATTTAAGACACAAAC
Found at i:2202347 original size:474 final size:467
Alignment explanation
Indices: 2201173--2202410 Score: 1602
Period size: 474 Copynumber: 2.6 Consensus size: 467
2201163 TAAGCCTTGT
*
2201173 TTCTCATAACAATCTCCATTCTTTTCAAGGTTAGGATCCAAAAACACATTCTCTTCATTAGGATA
1 TTCTCATAACAATCTCCATTCTTTTCAA-GATAGGATCCAAAAACACATTCTCTTCATTAGGATA
* ** * * * *
2201238 CATGACGTTGATGCTTTCATGTCGGAAGAAAAGCTTTTATTTCTGCCATTTTTGATAGAATCAAA
65 CATGACATTGATGCTTTGGTGTCGCAAG-AAAGCTTTT-CTTCTACCGTTTTTGATAGAATCAAA
* * * *
2201303 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATATTATTCCCTATTCTTTACAAGATTAGGT
128 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGC
*
2201368 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTT
193 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT-GCTTTGCAAGAAAGGCTT
* * *
2201433 TTTTCCCATTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATCAGCCAAACAAAGATTCTTGTA
257 TTTTCCCCTCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGCCAAACAAAGATTCTTGTA
* * * ** * *
2201498 TTTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAAAGATATCGAT
322 TCTTCATACATTTTGTGATTAGGCACTAAAAAAACATTATCCTCATTAAGATAAAAGATATCGAT
* * * ** * *
2201563 AATTTTCTTTTGCATGAAAATCTTTTCTTGGCCTATTTTACTTAGCAGCATAGTTCATCCCTTAA
387 AATTTTCCTTTACATGAAAATCTTTTCTTGCCCTATTTTACTTAAAAGCATAATTCATCCCATAA
*
2201628 ATAAGATAAGCAACGA
452 ATAAGACAAGCAACGA
* *
2201644 TTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTTTCTTCATTAGGATA
1 TTCTCATAACAATCTCCATTCTTTTCAAGA-TAGGATCCAAAAACACATTCTCTTCATTAGGATA
*
2201709 CATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA
65 CATGACATTGATGCTTTGGTGTCGCAAGAAA-GCTTTTC-TTCTACCGTTTTTGATAGAATCAAA
* *
2201774 GTTTTTCTCTTAAATAAGAC--ACATGAATACTCGTACTATTCCCCATTCTTTTCAAGATTAGGC
128 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGC
* * *
2201837 ACTTTAAACATAGTCTTCGCATTAGGATACACGATATTGGTGCTTTGACTTCGCAGGAAAGGCTT
193 ACTTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTG-CTTTGCAAGAAAGGCTT
* * * ***
2201902 TTTTCCCCTCAATTTTTGTAAGGTCAAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTT
257 TTTTCCCCTCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGCCAAACAAAGATTC---TT
* * * *
2201967 TTGATCTTCATACATTTTGTGATTAGGCACTAAAAAAACATTATCCTCGTTAAGATTAATGATAT
319 GT-ATCTTCATACATTTTGTGATTAGGCACTAAAAAAACATTATCCTCATTAAGATAAAAGATAT
* * * * *
2202032 TGATGATTTTCCTTTATATGAAAATCTTTTCTTTGCCCTATTTT-CGTTAAAATCATAATTCATT
383 CGATAATTTTCCTTTACATGAAAATCTTTTC-TTGCCCTATTTTAC-TTAAAAGCATAATTCATC
* *
2202096 CCATAAATTAGACAAGCATCGA
446 CCATAAATAAGACAAGCAACGA
* * * * * * *
2202118 TTCTCATAACAATATCCATTATTTTCAACATAGGATCCAAAAACAAACTCTATTCATTAGGAAAC
1 TTCTCATAACAATCTCCATTCTTTTCAAGATAGGATCCAAAAACACATTCTCTTCATTAGGATAC
* *
2202183 ATGACATTGATGCTTTGGGGTCACAACGAAAGCTTTTCTTCTACCGTTTTTGATAGAATCAAAGT
66 ATGACATTGATGCTTTGGTGTCGCAA-GAAAGCTTTTCTTCTACCGTTTTTGATAGAATCAAAGT
* * * * *
2202248 TTGTCTCTTAAATAAGACAAAGATGAATAGTTATACTGTTCCCCATTCTTTTCAAGATTAGGCAT
130 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCAC
* * * * **
2202313 TTTAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTGACAAGAAAGGCTTGC
195 TTTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGCTTTG-CAAGAAAGGCTTTT
*
2202378 TTCCCAC-CAATTTTTGTAAAATCTAAGTTCGTG
259 TTCCC-CTCAATTTTTGTAAAGTCTAAGTTCGTG
2202411 TTTATGGGGC
Statistics
Matches: 665, Mismatches: 87, Indels: 27
0.85 0.11 0.03
Matches are distributed among these distances:
468 1 0.00
469 148 0.22
470 4 0.01
471 131 0.20
472 46 0.07
473 142 0.21
474 192 0.29
475 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (467 bp):
TTCTCATAACAATCTCCATTCTTTTCAAGATAGGATCCAAAAACACATTCTCTTCATTAGGATAC
ATGACATTGATGCTTTGGTGTCGCAAGAAAGCTTTTCTTCTACCGTTTTTGATAGAATCAAAGTT
TGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAAGATTAGGCACT
TTAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGCTTTGCAAGAAAGGCTTTTTT
CCCCTCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGCCAAACAAAGATTCTTGTATCTT
CATACATTTTGTGATTAGGCACTAAAAAAACATTATCCTCATTAAGATAAAAGATATCGATAATT
TTCCTTTACATGAAAATCTTTTCTTGCCCTATTTTACTTAAAAGCATAATTCATCCCATAAATAA
GACAAGCAACGA
Found at i:2205354 original size:159 final size:158
Alignment explanation
Indices: 2204693--2208538 Score: 669
Period size: 159 Copynumber: 24.4 Consensus size: 158
2204683 TCCTGCTCAT
* ** * *
2204693 CCAAAGCACCAATATTGTGTATCCTAATGAGAAGACTATGTTTACA-GTGCCTAATCTTGAAAAG
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAAG
*** *
2204757 AATG-GAGAATAGTTTAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCTAA
65 AATGAG-GAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTC-AA
* * * * *
2204821 AATGGTGGAAATAACAGCTTTTCTTCCGACATG
128 AAAGGTGAAAAGAAAAGCTTTTCTTGCG--ATG
*** * * ** *
2204854 --AAAGCATA-AGCGTCATGTATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAATCTTGAAA
1 CCAAAGCA-ACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAA
* ** * * * * *
2204914 AGAATGA-GATTCTTACGAGAAATT-AGGCTTGTCCTT-TTTAAGGGATGAAA-TTTGATAT-TA
63 AGAATGAGGAATAGTACGAG-TATTCATGTTTGT-CTTATTTAAGAGA-CAAACTTTGAT-TCT-
* * * * * * * **
2204974 AGT-AAATAGG-GCAAAGAAAAGATTTCCATG-TAAA
123 -TTCAAAAAGGTGAAAAGAAAAGCTTTTCTTGCGATG
** * ** * * *
2205008 AAAAATCATTAATATCATTTATCCTAATGAGTAGAATGTATTTATA-GTGCCTAATC---AAAA-
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAAG
* * * * * * * * * *
2205068 AATGAATGAATTTCATTACTAGAATCCAAGTTTGTCTCATTTGAG-GCACGAACTTAGA--CTTT
65 AATG-AGGAA--T-AGTACGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTT
* *
2205130 ACAAAAATTGGTGAGAA-AAAAGCCTTTCTTGCGAAT-
125 -CAAAAA--GGTGAAAAGAAAAGCTTTTCTTGCG-ATG
* *** * *
2205166 CGAAAGTGCCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGA
* *
2205231 ATTAGGAATAGTACGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAA
66 ATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAA
2205296 CGGTGAAAAGAAAAGCTTTTCTTGCGATG
131 -GGTGAAAAGAAAAGCTTTTCTTGCGATG
* * * ** * *
2205325 CCAAAGCAACAATGTCATCTATCCTAATGAAGAA-AATGTGTTTTTGGAT-CCCAATCTTCAAAA
1 CCAAAGCAACAATATCATTTATCCTAATG-AGAAGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * * * * ** **
2205388 GAATG-GAAATTGTTACG-GAAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATAT-TAAG
64 GAATGAGGAATAG-TACGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT-TT
* * * * ** ** *
2205450 GAAAATAGG-GTAAAGAAAAGATTTCCACGTAAAAG
125 CAAAA-AGGTGAAAAGAAAAGCTTTTCTTG-CGATG
* * ** * * * **
2205485 -AAAATCATTAATATCTTTTATCCTAATGAGGAGAACATGTTTACA-GTGCCTAATC-CAAAAAT
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA-
* * * * * * * * * *
2205547 GAATGAAG-ATCGTTTCTAG-AATCTATGTTTGTCTCATTTGAG-GCACGAACTTAGACT-TTTC
64 GAATGAGGAATAG-TACGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTTC
*
2205608 AAAAATTGGTGAGAA-AAAAGCCTTTT-TTGCGAAT-
126 AAAAA--GGTGAAAAGAAAAG-CTTTTCTTGCG-ATG
*
2205642 CCAAAGC-ACAA-AT-ATTGTTATCCTAATGAGAA-AACTATGTTTACA-GAGCCTAATCTTGAA
1 CCAAAGCAACAATATCA-T-TTATCCTAATGAGAAGAA-TATGTTTA-AGGTGCCTAATCTTGAA
* * * * *
2205702 AAGAATGGGGAATAGTATGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCA
62 AAGAATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCA
* * * *
2205767 AAAATGG-CAGAAATAAAAGCTTTTCTTCCAACATG
127 AAAA-GGTGA-AAAGAAAAGCTTTTCTTGC--GATG
* ** * * ** * *
2205802 --AAAGCATCAACGTCATGTATCCTAATGA-AGAGAATTTGTTTTTGGAT-CCCAATCTTAAAAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * * * * * *
2205863 GAATG-GAGATTATTACGAG-AATCGAGGCTTATCCTT-TTTATGGGATAAACTTTGATAT-TAA
64 GAATGAG-GAATAGTACGAGTATTC-ATGTTTGT-CTTATTTAAGAGACAAACTTTGAT-TCT--
* * * * * ** **
2205924 GT-AAAATAGG-GCAAAGAAAAGATTTCCATGTAAAA
123 TTCAAAA-AGGTGAAAAGAAAAGCTTTTCTTGCGATG
** * ** * * * **
2205959 AAAAATTCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAAAC-AAAAAA
1 CCAAA-GCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA
* * * * * * * * * *
2206022 TGAATGAAG-TTCATTACCAGAATCCATGCTTGTCTCATTTGAG-GCACAAACTTAGA--CTTTA
64 -GAATGAGGAAT-AGTACGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTT-
** *
2206083 CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAT-
125 CAAAAA--GGTGAAAAGAAAAGCTTTTCTTGCG-ATG
*** * * * * *
2206118 CCAAAGTGCCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCATAAAAAGA
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGA
* * *
2206183 ATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAG--AAACTTTGATTCTTTCAAAAA
66 ATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAA
* **
2206246 CGGCGAAAAGAAAAGCTTTTCTTGCGACA
131 -GGTGAAAAGAAAAGCTTTTCTTGCGATG
* ** * * ** *
2206275 CCAAAGCAATAATGCCATTTATCCTAATGA-AGAGAATGTATTTTTGGAT-CCCAATCTTGAAAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * *
2206338 GAAT--GGAGATTGTTACGA--A---ATGCTTGTCCTT-TTTATGGGATAAACTTTGATAT-TAA
64 GAATGAGGA-ATAG-TACGAGTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGAT-TCT--
* * *
2206394 GT-AAAATAGG-GCAAAGAAAAG-ATTTC---C-ATG
123 TTCAAAA-AGGTGAAAAGAAAAGCTTTTCTTGCGATG
** * * * *
2206424 TAAAAGAAACTCATTTATATCATTTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCATG
1 CCAAAGCAA--CA---ATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTG
* * * *
2206488 AAAAGAATGGGGAATAGTATGAGTATTCAAGTTTATCTTATTTAAGAG--AAACTTTGATTCTTT
60 AAAAGAATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTT
* **
2206551 CAAAAACGGTGAAAAGAAAAGCTTTTCTTGTGACA
125 CAAAAA-GGTGAAAAGAAAAGCTTTTCTTGCGATG
* ** * ** * *
2206586 CCAAAGCAATAATGCCATTTATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAATCATGAAAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * **
2206649 GAAT--GGAGATTGTTACGA--A---ATGCTTGTCCTT-TTTATGGGATGAACTTTGATAT-TAA
64 GAATGAGGA-ATAG-TACGAGTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGAT-TCT--
* * * * * ** *
2206705 GT-AAAATAGG-GCAAAGAAAAGATTTCCATGTAAAAG
123 TTCAAAA-AGGTGAAAAGAAAAGCTTTTCTTG-CGATG
* * *** * * **
2206741 -AAAATCATTTATATCATTTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATC-AAAAAAT
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA-
* * * * * * * *
2206803 GAATGAAG-ATCATTACTAGAATCCATGTTTGTCTCATTTGAG-GCACAAACTTAGA--CTTTAC
64 GAATGAGGAAT-AGTACGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTT-C
* * * *
2206864 AAAAA--TTAATAGGAAAAAAGCCTTTCTTGTGAAT-
126 AAAAAGGTGAA-A--AGAAAAGCTTTTCTTGCG-ATG
* * *
2206898 CCAAAGCACCAATATC-TTGTATCCTAATGAGAAGACTATGTTTACA-GTGCCTAATCTTAAAAA
1 CCAAAGCAACAATATCATT-TATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA
* ** * *
2206961 GAATGGGGAATAGTTTGAGTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
64 GAATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAA
* **
2207026 AACGGTGGAAAGAAAAGCTTTTCTTGCGACA
129 AA-GGTGAAAAGAAAAGCTTTTCTTGCGATG
* * * * * *** ** * *
2207057 CGAAAGCATCAATGTCATGTATCCTAACGA-AGAGAATGCCTTTTTGGAT-CCCAATCTTGAGAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * * **
2207120 GAAT-A-GAGATTGTTACGAG-AATCAATGCTTGTCTTATTTGAGGGATGAACTTTGATAT-TAA
64 GAATGAGGA-ATAG-TACGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--
* * * * * * * ** *
2207181 GTGAAATAGG-GCAAAGAAAAGATTTCCATGTAAAAG
123 TTCAAAAAGGTGAAAAGAAAAGCTTTTCTTG-CGATG
* * ** * * * ** **
2207217 -AAAATCATTAATATCTTTTATCCTAATGTGGAGAACGTGTTTATA-GTGCCTAATC-AAAAAAT
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA-
* * * * * *
2207279 GAATGAAG-ATCATTACTAGAATTCATGTTTGTCTCATTT--GAGGC--AC----A-------AA
64 GAATGAGGAAT-AGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAA
* ** *
2207328 AATTGGTGGGAA-AAAAGCCTTTCTTGCGAAT-
128 AA-AGGTGAAAAGAAAAGCTTTTCTTGCG-ATG
* * * *
2207359 CCAAAGCACCAGTATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGA
* * * *
2207424 ATGGGGAATAGTATGAGTATTCAAGTTTTTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAA
66 ATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAA
**
2207489 CGGTGAAAA-AAAAGCTTTTCTTGCGACA
131 -GGTGAAAAGAAAAGCTTTTCTTGCGATG
* * ** *
2207517 CCAAAGCAACAATGTCATCTATCCTAATGA-AGAGAATATGTTTTTGGAT-CCCAATCTTGAAAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * * * **
2207580 GAAT-A-GAGTTTGTTGCGAG-AATCGATGCTTGTCTTATTAAAGAGATGAACTTTGATAT-TAA
64 GAATGAGGA-ATAG-TACGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--
* * * * * * ** *
2207641 GT-AAAATAAG-GCAAACAAAAGATTTTCATGTAAAAG
123 TTCAAAA-AGGTGAAAAGAAAAGCTTTTCTTG-CGATG
* ** * * ****
2207677 -AAAATTAATAATATCATTTATCCTAATGAGAAGAATGTGTTTATA-GTGCCTAATAAAAAAAAT
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA-
* * * * * * * *
2207740 GAATGAAG-ATCATTACTG-G-AATCTATTTTTGTCTCATTTGAG-GTA-AGAACCTAGA--CTT
64 GAATGAGGAAT-AGTAC-GAGTATTC-ATGTTTGTCTTATTTAAGAG-ACA-AACTTTGATTCTT
* **** * * *
2207798 TACAAAAAATGGGGGGGTGGGGGAAAGCCTTTCTTGCAAAT-
124 T-C-AAAAA----GGTGAAAAGAAAAGCTTTTCTTGC-GATG
* ** * * * *
2207839 CCAAAGCACCAATATTGTGTATCCTAATGAAAAGACTATGTTTAAGGTGACTAATCTTGAAAAGA
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGA
* ** * * *
2207904 ATGGGGAATAGTTTGAGCATTCAAGTTTGTCTTATTTAAGAGGA-AAACTTTGATTGTTTCAAAA
66 ATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTTTCAAAA
* **
2207968 ATGGTGAAAAGAAAAGCTTTTCTTACGACA
130 A-GGTGAAAAGAAAAGCTTTTCTTGCGATG
* * * * ** *
2207998 CCAAAGCAATAATGTCA-TCATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
* * * * *
2208060 GAAT-A-GAGATTGTTACGAG-AGTCGATGCTTGTCTTATTTAAGGGATAAACTTTGATAT-TAA
64 GAATGAGGA-ATAG-TACGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--
* * * * * *
2208121 GT-AAAATAGG-GCAAAGAAAAGATTTCCATGCAATAG
123 TTCAAAA-AGGTGAAAAGAAAAGCTTTTCTTGCGAT-G
* * * * ** **
2208157 -AAAATCAACAATATCATTTATCCTACTGAGGAGAATGCGTTTCCAA--TGCCTAATC-ACAAAT
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTT--AAGGTGCCTAATCTTGAAA-
* * * * ** ** * * * * * * * *
2208218 TGAATGAAG-ATCAATACTACAAGCCACGTTTGGCTCATTTGAGACACGAACTTAGA--CATTAC
63 AGAATGAGGAAT-AGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-TTTC
* * * * **
2208280 AAAAATTGGT-AGGAAG-AAAGCCTTTCTGGCAAAA
126 AAAAA--GGTGA-AAAGAAAAGCTTTTCTTGCGATG
* * * * * ** * **
2208314 CCAAAGCATCAATATCATGTATCCTTATGAGATGACTACATTTATGGTGCCTAATCCAGAAAAGA
1 CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGA
* ** * * * *
2208379 ATG-GGATTAGTATAACTATTCATGTTTATCTTATTTAAATAAACAAACTTTGATTCTTTCAAAA
66 ATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTTTCAAAA
* **
2208443 ACGGTGAAAA-AAAAGCTTTTCTTGCAACA
130 A-GGTGAAAAGAAAAGCTTTTCTTGCGATG
* * * ** *
2208472 CCAAAGCAACAATGTCATCTATCCTAATGA-AGAGAATATTTTTTTGGAT-CCCAATCTTGAAAA
1 CCAAAGCAACAATATCATTTATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAA
2208535 GAAT
64 GAAT
2208539 AGAGTTTGTT
Statistics
Matches: 2594, Mismatches: 765, Indels: 655
0.65 0.19 0.16
Matches are distributed among these distances:
142 4 0.00
143 81 0.03
144 9 0.00
145 4 0.00
147 2 0.00
149 7 0.00
150 1 0.00
151 3 0.00
152 27 0.01
153 22 0.01
154 149 0.06
155 38 0.01
156 102 0.04
157 327 0.13
158 744 0.29
159 767 0.30
160 164 0.06
161 25 0.01
162 49 0.02
163 65 0.03
164 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
CCAAAGCAACAATATCATTTATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGA
ATGAGGAATAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAA
GGTGAAAAGAAAAGCTTTTCTTGCGATG
Found at i:2205790 original size:475 final size:472
Alignment explanation
Indices: 2204463--2206485 Score: 2807
Period size: 475 Copynumber: 4.3 Consensus size: 472
2204453 AATGAAGAGA
* * *
2204463 ATGCTTGT-CTTATTTAAGAGATGAACTTTGATATTAACTAAAATAGGGCAAAGAAAAGATTTCA
1 ATGCTTGTCCTT-TTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCC
* *
2204527 ATGTAAAAGAAAATCATTAATATCATTTATCCTAATGACGAGAATGTGTTTATAGTGCCTAATCC
65 ATGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
*
2204592 AAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACCTAGACTTT
130 AAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * **
2204657 TCAAAACTTGATGGGAAAAAAGCCTTTCCTGCTCATCCAAAGCACCAATATTGTGTATCCTAATG
195 ACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATTGTGTATCCTAATG
* * * *
2204722 AGAAGACTATGTTTACA-GTGCCTAATCTTGAAAAGAATGGAGAATAGTTTAAGTATTCATGTTT
260 AGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTT
* * * * * *
2204786 GTCTTATTTAAGAGACAAACTTTGATTCTATCTAAAATGGTGGAAATAACAGCTTTTCTTCCGAC
324 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAGCTTTTCTTCCG--
*
2204851 ATGAAAGCATA-AGCGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAA
387 ATGAAAGCA-ACAACGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAA
* *
2204915 GAAT-GAGATTCTTACGAGAAATT
451 GAATGGAGATTGTTAC--GAAATG
* *
2204938 AGGCTTGTCCTTTTTAAGGGATGAAATTTGATATTAAGT-AAATAGGGCAAAGAAAAGATTTCCA
1 ATGCTTGTCCTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* *
2205002 TGTAAAA-AAAATCATTAATATCATTTATCCTAATGAGTAGAATGTATTTATAGTGCCTAATCAA
66 TGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAA
** *
2205066 AAAATGAATGAATTTCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
131 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* ** **
2205131 CAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCGAAAGTGCCAATATCATGTATCCTAATGA
196 CAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATTGTGTATCCTAATGA
** *
2205196 GAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATTAGGAATAGTACGAGTATTCAAGTTTGT
261 GAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGT
* * *
2205261 CTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGATGC
326 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAGCTTTTCTTCCGATG-
* * * *
2205326 CAAAGCAACAATGTCATCTATCCTAATGAAGAAAATGTGTTTTTGGATCCCAATCTTCAAAAGAA
390 -AAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAA
*
2205391 TGGAAATTGTTACGGAAATCG
454 TGGAGATTGTTAC-GAAAT-G
* * *
2205412 ATGCTTGT-TTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGTAAAGAAAAGATTTCC
1 ATGCTTGTCCTT-TTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCC
* * ** * *
2205476 ACGTAAAAGAAAATCATTAATATCTTTTATCCTAATGAGGAGAACATGTTTACAGTGCCTAATCC
65 ATGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
2205541 AAAAATGAATGAAGATCGTTTCTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
130 AAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * *
2205606 TCAAAAATTGGTGAGAAAAAAGCCTTTTTTGCGAATCCAAAGCACAAATATTGT-TATCCTAATG
195 ACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATTGTGTATCCTAATG
* * *
2205670 AGAAAACTATGTTTACA-GAGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTT
260 AGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTT
* * * *
2205734 ATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGC-AGAAATAAAAGCTTTTCTTCCAA
324 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGA-AAAGAAAAGCTTTTCTTCC--
* * * *
2205798 CATGAAAGCATCAACGTCATGTATCCTAATGAAGAGAATTTGTTTTTGGATCCCAATCTTAAAAA
386 GATGAAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAA
*
2205863 GAATGGAGATTATTACGAGAATCG
451 GAATGGAGATTGTTACGA-AAT-G
* * * *
2205887 AGGCTTATCCTTTTTATGGGATAAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
1 ATGCTTGTCCTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* *
2205952 TGTAAAAAAAAATTCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACA
66 TGTAAAAGAAAA-TCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
2206017 AAAAATGAATGAAGTTCATTACCAGAATCCATGCTTGTCTCATTTGAGGCACAAACTTAGACTTT
130 AAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* ** *
2206082 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGTGCCAATATCGTGTATCCTAATG
195 ACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATTGTGTATCCTAATG
* *
2206147 AGAAGACTATGTTTAAGGTGCCTAATCATAAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTG
260 AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTG
* *
2206212 TCTTATTTAAGAG--AAACTTTGATTCTTTCAAAAACGGCGAAAAGAAAAGCTTTTCTTGCGACA
325 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAGCTTTTCTTCCG--A
** * * * * *
2206275 CCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTATTTTTGGATCCCAATCTTGAAAAGA
388 TGAAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGA
2206340 ATGGAGATTGTTACG-AA--
453 ATGGAGATTGTTACGAAATG
* *
2206357 ATGCTTGTCCTTTTTATGGGATAAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
1 ATGCTTGTCCTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* *
2206422 TGTAAAAGAAACTCATTTATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
66 TGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
2206486 TGAAAAGAAT
Statistics
Matches: 1371, Mismatches: 155, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
469 50 0.04
470 73 0.05
471 3 0.00
472 2 0.00
473 344 0.25
474 75 0.05
475 429 0.31
476 313 0.23
477 82 0.06
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
ATGCTTGTCCTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
TGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAA
AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
CAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATTGTGTATCCTAATGA
GAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGAAAAGAAAAGCTTTTCTTCCGATGA
AAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
GAGATTGTTACGAAATG
Found at i:2206302 original size:157 final size:155
Alignment explanation
Indices: 2206137--2206654 Score: 465
Period size: 157 Copynumber: 3.3 Consensus size: 155
2206127 CAATATCGTG
* * *
2206137 TATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCATAAAAAGAATGGGGAATAGTATGAGTA
1 TATCCTAATGAGAAGAATGTGTTTAAGGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGTA
2206202 TTCAAGTTTGTCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAAGAAAAGCTTTTC
66 TTCAAGTTTGTCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGG-GAAAAGAAAAGCTTTTC
2206267 TTGCGACACCAAAGCAATAATGCCATT
130 TTG-GACACCAAAGCAATAATGCCATT
* ** * * * *
2206294 TATCCTAATGA-AGAGAATGTATTTTTGGAT-CCCAATCTTGAAAAGAATGGAG-ATTGT-T-AC
1 TATCCTAATGAGA-AGAATGTGTTTAAGG-TGCCTAATCATGAAAAGAATGGGGAATAGTATGA-
* * * * *
2206354 G-A---AATGCTTGTCCTT-TTTATGGGATAAACTTTGATAT-TAAGT-AAAATA-GGGCAAAGA
63 GTATTCAA-GTTTGT-CTTATTTA--AGAGAAACTTTGAT-TCT--TTCAAAA-ACGGGAAAAGA
* * * * * ** * * * **
2206411 AAAGATTTCCATGTAAAAGAAACTCATTTATATCATT
120 AAAGCTTTTCTTGGACACCAAA-GCAATAATGCCATT
*
2206448 TATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
1 TATCCTAATGAGAAGAATGTGTTTA-AGGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
*
2206512 ATTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTTT
65 ATTCAAGTTTGTCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGG-GAAAAGAAAAGCTTTT
2206577 CTTGTGACACCAAAGCAATAATGCCATT
129 CTTG-GACACCAAAGCAATAATGCCATT
** *
2206605 TATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAATCATGAAAAGAATGG
1 TATCCTAATGAGA-AGAATGTGTTTAAGG-TGCCTAATCATGAAAAGAATGG
2206655 AGATTGTTAC
Statistics
Matches: 273, Mismatches: 57, Indels: 62
0.70 0.15 0.16
Matches are distributed among these distances:
151 2 0.01
152 9 0.03
153 9 0.03
154 81 0.30
155 15 0.05
156 16 0.06
157 121 0.44
158 10 0.04
159 8 0.03
160 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (155 bp):
TATCCTAATGAGAAGAATGTGTTTAAGGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGTA
TTCAAGTTTGTCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGGAAAAGAAAAGCTTTTCT
TGGACACCAAAGCAATAATGCCATT
Found at i:2206494 original size:311 final size:311
Alignment explanation
Indices: 2206137--2206807 Score: 1211
Period size: 311 Copynumber: 2.2 Consensus size: 311
2206127 CAATATCGTG
* * *
2206137 TATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCATAAAAAGAATGGGGAATAGTATGAGT
1 TATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCATAAAAAGAATGGGGAATAGTATGAGT
*
2206201 ATTCAAGTTTGTCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAAGAAAAGCTTTT
65 ATTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAAGAAAAGCTTTT
2206266 CTTGCGACACCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTATTTTTGGATCCCAATC
130 CTTGCGACACCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTATTTTTGGATCCCAATC
*
2206331 TTGAAAAGAATGGAGATTGTTACGAAATGCTTGTCCTTTTTATGGGATAAACTTTGATATTAAGT
195 ATGAAAAGAATGGAGATTGTTACGAAATGCTTGTCCTTTTTATGGGATAAACTTTGATATTAAGT
*
2206396 AAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAACTCATTTATATCATT
260 AAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTTATATCATT
*
2206448 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGTA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGGGGAATAGTATGAGTA
*
2206513 TTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTTTC
66 TTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAAGAAAAGCTTTTC
* *
2206578 TTGTGACACCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCA
131 TTGCGACACCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTATTTTTGGATCCCAATCA
*
2206643 TGAAAAGAATGGAGATTGTTACGAAATGCTTGTCCTTTTTATGGGATGAACTTTGATATTAAGTA
196 TGAAAAGAATGGAGATTGTTACGAAATGCTTGTCCTTTTTATGGGATAAACTTTGATATTAAGTA
2206708 AAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTTATATCATT
261 AAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTTATATCATT
2206759 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-AAAAATGAATG
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAAA-GAATG
2206808 AAGATCATTA
Statistics
Matches: 346, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
310 4 0.01
311 341 0.99
312 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.32
Consensus pattern (311 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGGGGAATAGTATGAGTA
TTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAAGAAAAGCTTTTC
TTGCGACACCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTATTTTTGGATCCCAATCA
TGAAAAGAATGGAGATTGTTACGAAATGCTTGTCCTTTTTATGGGATAAACTTTGATATTAAGTA
AAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTTATATCATT
Found at i:2206775 original size:154 final size:153
Alignment explanation
Indices: 2206290--2206782 Score: 536
Period size: 154 Copynumber: 3.2 Consensus size: 153
2206280 GCAATAATGC
* *
2206290 CATTTATCCTAATGAAGAGAATGTATTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACG
1 CATTTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGGAGATTGTTACG
2206355 AAATGCTTGTCCTTTTTATGGGATAAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTC
66 AAATGCTTGTCCTTTTTATGGGAT-AACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTC
*
2206420 CATGTAAAAGAAACTCATTTATAT
130 CATGTAAAAGAAAATCATTTATAT
* * * * * *
2206444 CATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCATGAAAAGAATGGGGAATAGTAT
1 CATTTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCATGAAAAGAATGGAG-ATTGT-T
* * * * * *
2206508 GA-GTATTCAA-GTTTAT-CTTATTTAAGAGA-AACTTTGAT-TCT--TTCAAAA-ACGGTGAAA
63 -ACG-A---AATGCTTGTCCTT-TTTATGGGATAACTTTGATAT-TAAGT-AAAATA-GG-GCAA
* * * * * ** * * * **
2206565 AGAAAAGCTTTTCTTGTGACACCAAAGCAATAATGC
118 AGAAAAGATTTCCATGTAAAAGAAAATCATTTATAT
2206601 CATTTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGGAGATTGTTACG
1 CATTTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGGAGATTGTTACG
2206666 AAATGCTTGTCCTTTTTATGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTC
66 AAATGCTTGTCCTTTTTATGGGAT-AACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTC
2206731 CATGTAAAAGAAAATCATTTATAT
130 CATGTAAAAGAAAATCATTTATAT
*
2206755 CATTTATCCTAATGAGGAGAATGTGTTT
1 CATTTATCCTAATGAAGAGAATGTGTTT
2206783 ATAGTGCCTA
Statistics
Matches: 264, Mismatches: 52, Indels: 46
0.73 0.14 0.13
Matches are distributed among these distances:
151 2 0.01
152 11 0.04
153 4 0.02
154 113 0.43
155 15 0.06
156 15 0.06
157 87 0.33
158 4 0.02
159 11 0.04
160 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (153 bp):
CATTTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGGAGATTGTTACG
AAATGCTTGTCCTTTTTATGGGATAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCC
ATGTAAAAGAAAATCATTTATAT
Found at i:2209585 original size:476 final size:475
Alignment explanation
Indices: 2208739--2213648 Score: 6212
Period size: 476 Copynumber: 10.4 Consensus size: 475
2208729 GGGGGGCGGA
* * ** * * **
2208739 AAAGCCTTTCTTGCAAATCCAAAGCACCAATATTGTGTATCCTAATGAAAAGACTATGTTTAAGG
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
* * * *
2208804 TGACTAATCTTGAAAAGAATGGGGAATAGTTTGAGCATTCAAGTTTGTCTTATTTAAGAGGA-AA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GACAA
* * * * *
2208868 ACTTTGATTGTTTCAAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCAATAATGTCA
130 ACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
* *
2208933 T-CATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAG
195 TGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
*
2208997 AGTCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAT
260 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAT
* * * *
2209062 TTCCATGCAATAGAAAATCAACAATATCATTTATCCTACTGAGGAGAATGCGTTTCA-AATGCCT
325 TTCCATGCAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT-ATAGTGCCT
* * * *
2209126 AATCACAAATTGAATAAAGATCAATACTACAAGCCACGTTTGGCTCATTTGAGACACGAACTTAG
388 AATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAG
2209191 ACATTACAAAAATTGGTAGGAAG
453 ACATTACAAAAATTGGTAGGAAG
* * *
2209214 AAAGCCTTTCTGGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGATGACTACATTTATGG
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
** * * * *
2209279 TGCCTAATCCCGAAAAGAATGGGGATTAGTAT-AGCTATTCATGTTTATCTTATTTAAATAAACA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG-TATTCATGTTTGTCTTATTT-AAGAGACA
*
2209343 AACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCAACAATGTC
129 AACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTC
** * * * * * * *
2209408 ATGTGTCCTAATGAAGAGAAAGTGTTTTAGGTTCCTAATCTTGAAAAGAATGGGGATTGTTACCA
194 ATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * * * *
2209473 GAATCAATACTTGTCTT-TTTAAGGGATGAA-TGTTGATTTTAAAG-AAAATATGGCAAAGGAAA
259 GAATCGATGCTTGTCTTATTTAAGGGATGAACT-TTGATATT-AAGTAAAATAGGGCAAAGAAAA
* * * *
2209535 GATTTCCACGCGAAAGAAAATCATCCATATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGC
322 GATTTCCATGC-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
2209600 CCAATCACAAATTGAACGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACCT
386 CTAATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTT
* * *
2209665 AGATATTACAAAAATTTGTCGGAAG
451 AGACATTACAAAAATTGGTAGGAAG
*
2209690 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC--CATGTCAAT
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACAT-TTAA-
* * *
2209753 GGGGCCTAATCTTGAAAATAAAGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
64 GGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
2209818 AACTTTGATTCTTTCAAAAACAGTGGAAGGAAAAGCTTTTCTTGCAACACCAAAGCAACAATGTC
129 AACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTC
* *
2209883 TTGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAA
194 ATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
*
2209948 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATAAAGTAAAATAGGGCAAAGAAAAGA
259 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA
2210013 TTTCCATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
324 TTTCCATGCAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2210078 AATCACAAATTGAATGAAGATCAATACAAGAATCCACATTTGGCTCATTTGAGGCATGAACTTAG
388 AATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAG
2210143 ACATTACAAAAATTGGTAGGAAG
453 ACATTACAAAAATTGGTAGGAAG
* * * * **
2210166 AAAGCCTTTCTTGCAAAACCAAAGAATTAATATCGTGTATCCTTATGAGAAAACTACATTTTTGG
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
** ** * * ** *
2210231 TGTGTAATCCAGAAAAGAATGGGGATTAGTATAACAATTCATGTTTGTCTTATTTAAACAGACAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT-AAGAGACAA
* * **
2210296 ACTTTGATTCTTTCAAAAACGATGGAAAGAAAAGCTTTTCATGCGACACCAAAGGTACAATGTCA
130 ACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
* * *
2210361 TGCATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTGACAAGAATGGAGATTGTTACGAG
195 TGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
* * *
2210426 AATCGATGCTTGTCTTTTTTAAGGGATGAATTTTGATTTTAAAG-AAAATAGGGC-----AAAG-
260 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAAAGAAAAGA
* * * * *
2210484 -----A---AAAG-AAATTATTAATATCATTTATCCTAATGAGGAGAACGTCTTTATAGTACCTA
324 TTTCCATGCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2210540 ATCAAAAAATGAGTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
389 ATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGA
* * *
2210605 CTTTATAAAAATTGGTGGGAA-
454 CATTACAAAAATTGGTAGGAAG
* * * * * * * * **
2210626 AAGAGCCTTTCCTACGAATCTAGAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAG
1 AA-AGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAG
* * *
2210691 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGGCTTTTTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * * * *
2210756 ACTTTGATTCTTTTAAAAATGATGAAAACAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCG
130 ACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
* * *
2210821 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT-TTAGAAAAGAATGGAGATTATTACGA
195 TGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTT-GAAAAGAATGGAGATTGTTACGA
**
2210885 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTCAATATTAAGTAAAATAGGGCAAAGAAAAGA
259 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA
* *** * * * **
2210950 TTTTCGCCCAAAAGAAACTCATCAATACCATTAATCCTAATGAGGAGAATGTGTTTATAGTGTGT
324 TTTCCATGC-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * *
2211015 AATCACAAAATGAATGAAGATCATTACTAGAATCTAGGTTT-GCTCATTTGAGGCACGAACTTAG
388 AATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAG
* *
2211079 AC-TTCACAAAATTTGGT-GTGAAA
453 ACATT-ACAAAAATTGGTAG-GAAG
* * * * **
2211102 AAAGCTTTTCTTGCGAAACCAAAGCA-CTAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
1 AAAGCCTTTCTTGCAAAACCAAAGCATC-AATATCATGTATCCTTATGAGAAGACTACATTTAAG
*
2211166 GTGCCTAATCTTGAAAAGAATGGGGAATTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
*
2211231 ACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
130 ACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
* * * *
2211296 TGCATCCTAATGAAGGGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAAATTGTTATGAA
195 TGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
* *
2211361 AATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATTGGGCAAAGAAAAGAT
260 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAT
* * * *
2211426 TTTCATGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
325 TTCCATG-CAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
2211491 ATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGA
389 ATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGA
* * *
2211556 CTTTACAAAAATTGGTGGGAAA
454 CATTACAAAAATTGGTAGGAAG
* * * * * * * ** * ** *
2211578 AAAGCTTTTCCTGCGAATCCAAAGCACCAATATCATGCATACAAATGAGAGGACTATGTTTAAGA
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
* * *
2211643 TGCCAAATCTTGAAAAGAGTGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
** * *
2211708 CTTTGATTCTACCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAATAATGTCAT
131 CTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCAT
* * * * *
2211773 -CTATCCTAAAGATA-AGAATGTGTTTTTGGATCCTAATCTTGAAAAGAAGGGAGATTGTTATGA
196 GC-ATCCTAATGA-AGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* *
2211836 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAGGAAAAGA
259 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA
* *
2211901 TTTCCTTGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCT
324 TTTCCATGCAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2211966 AATCACAAATTGAAAGAAGATCAATACTGGAATCCACGTTTAGCTCATTTGAGGCACGAACTTAG
388 AATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAG
*
2212031 ACATTACAAAAATTGATAGGAAG
453 ACATTACAAAAATTGGTAGGAAG
* * *
2212054 AAAGCCTTTCTGGTAAAACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTACATTTATA-
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTA-AG
* * * * * * *
2212118 GTGCCTAATC-CGAAAAAGAATGGGGATTAGTATAACTATTCATGTTTCTCTTATTTAAACAGAT
65 GTGCCTAATCTTG-AAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT-AAGAGAC
* *
2212182 AAACTTTGATTCTTTCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACTCCAAAGCAACAATGT
128 AAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGT
* * * *
2212247 CATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGGGATTGTTACA
193 CATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * * * *
2212312 AGAATTGATGCTTGTCTTTTTTAAGGG-TCGAA-TGTTGATTTTAAAG-AAAATACGGTAAAGAA
258 AGAATCGATGCTTGTCTTATTTAAGGGAT-GAACT-TTGATATT-AAGTAAAATAGGGCAAAGAA
** * * *
2212374 AAGATTTTTATGCAAAAGAAAATCATCCATATCATTAATCTTAATGAGGAGAA--TGTTTATAGT
320 AAGATTTCCATGC-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
2212437 GCCCAATCACAAATTGAACGAAGATCAATACTAGAATCCACGCTTGGCACATTTGAGGCACAAAC
384 GCCTAATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAAC
*
2212502 TTAGAAATTACAAAAATTGGTAGGAAG
449 TTAGACATTACAAAAATTGGTAGGAAG
* ** * * *
2212529 AAAGCGTTTCTTGCAAAACCAAAGCATCAATATCATGTATAGTTATGAGAAGGCTAAATTTACGG
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
* * * *
2212594 GGCCTAATCTTGAAAATAATGGGGAATAGTATGAGTATTCATGTTTGACTTATTTTAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
*
2212659 CTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCAT
131 CTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCAT
*
2212724 GCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGA
196 GCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
* *
2212789 ATCGATGCCTGTCTTATTTAAGGGATGAATTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATT
261 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATT
2212854 TCCATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
326 TCCATGCAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
*
2212919 TCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGAACTTAGAC
390 TCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGAC
2212984 ATTACAAAAATTGGTAGGAAG
455 ATTACAAAAATTGGTAGGAAG
* * * **
2213005 AAAGCCTTTCTTGCAAAACCAAAGAATTAATATCGTGTATCCTTATGAGAAGACTACATTTTTGG
1 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
** * * * ** * *
2213070 TGTGTAATCTGGAAAAGAATGGGGATTAGTATAACAATTCATATTTGTCTTATTTAAACAGACAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTT-AAGAGACAA
* * **
2213135 ACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTTTCATGCGACACCAAAGGTACAATGTCA
130 ACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
* * *
2213200 TGCATCCTAATAAAGGAAATATGTTTTT-GATTCCCAATCTTGAAAAGAATGGAGATTGTTACGA
195 TGCATCCTAATGAAGGGAATGTGTTTTTGGA-TCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * * *
2213264 GAATCGATGCTTGTCTTTTTTAAGGGACGAATTTTGATTTTAAAG-AAAATAGGGC-----AAAG
259 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAAAGAAAAG
* * * *
2213323 ------A---AAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAACGTCTTTATAGTACCT
323 ATTTCCATGCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * * * *
2213379 AATTAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCATGAACTTAG
388 AATCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAG
*
2213444 AC-TCTACAAAAATTGGTGGGAA-
453 ACAT-TACAAAAATTGGTAGGAAG
* * * * * * * * **
2213466 AAGAGCCTTTCCTGCGAATCTAGAGCACCAATATCATGCATCCTAATGAGAAGACTATGTTTAAG
1 AA-AGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAG
* * * * *
2213531 GTGCCTAATCTTGAGAAGAATAGGGAATAGTATGAGTATTCAGGTTTGGCTTGTTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
2213596 ACTTTGATTCTTTCGAAAACGAT-GAAACGAAAAGCTTTTCTCGCGACACCAAA
130 ACTTTGATTCTTTCAAAAACGGTGGAAA-GAAAAGCTTTTCTTGCGACACCAAA
2213649 TGATGAAAAC
Statistics
Matches: 3854, Mismatches: 507, Indels: 162
0.85 0.11 0.04
Matches are distributed among these distances:
459 5 0.00
460 169 0.04
461 266 0.07
462 218 0.06
463 4 0.00
465 4 0.00
466 2 0.00
472 8 0.00
473 5 0.00
474 230 0.06
475 861 0.22
476 1435 0.37
477 632 0.16
478 15 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (475 bp):
AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTAAGG
TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCAT
GCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATT
TCCATGCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
CACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACA
TTACAAAAATTGGTAGGAAG
Found at i:2209981 original size:159 final size:159
Alignment explanation
Indices: 2209799--2210463 Score: 374
Period size: 159 Copynumber: 4.2 Consensus size: 159
2209789 GTATTCATGT
* ** * * *
2209799 TTGTCTTATTTAAGAGACAAACTTTGATTCTTTCA-AAAACAGTGGAAGGAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTCATTCACAAAACAGTGGAAAGAAAAGCTTTTCATGC
* * *
2209863 AACACCAAAGCAACAATGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGAT-CCCAATCTTGA
66 AACACCAAAGCAACAATATCTTGCATCCTAATG-AGGGAATATGTTTTTGG-TGCCCAATCTAGA
2209927 AAAGAATGGAGATTGTTACAAGAATCGATGC
129 AAAGAATGGAGATTGTTACAAGAATCGATGC
** * * * *
2209958 TTGTCTTATTTAAGGGATGAACTTTGA-T-ATAAAGTAAAATAG-GGCAAAGAAAAGATTTCCAT
1 TTGTCTTATTTAAGGGATGAACTTTGATTCATTCA-CAAAACAGTGG-AAAGAAAAGCTTTTCAT
* ** * * * * * * *
2210020 GCAATAGAAAATCATCAATATCATT-TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-A
64 GCAACACCAAAGCAACAATATC-TTGCATCCTAATGAGG-GAATATGTTTTTGGTGCCCAATCTA
* * * *** * ***
2210083 CAAATTGAATGAAGATCAATACAAGAATCCACAT
127 GAAA-AGAATGGAGATTGTTACAAGAATCGATGC
* * * * * * * *
2210117 TTGGCTCATTTGAGGCATGAACTTAGA--CATT-ACAAAA-ATTGGTAGGAAG-AAAGCCTTTCT
1 TTGTCTTATTTAAGGGATGAACTTTGATTCATTCACAAAACAGTGG-A--AAGAAAAGCTTTTCA
* * * * * ** ** *** *
2210177 TGCAAAACCAAAG-AATTAATATCGTGTATCCTTATGAGAAAACTACATTTTTGGTGTGTAATCC
63 TGCAACACCAAAGCAA-CAATATCTTGCATCCTAATGAGGGAA-TATGTTTTTGGTGCCCAATCT
* * * *
2210241 AGAAAAGAATGGGGATTAG-TATAACAATTC-ATGT
126 AGAAAAGAATGGAGATT-GTTACAAGAA-TCGATGC
** ** *
2210275 TTGTCTTATTTAAACAGACAAACTTTGATTCTTTCA-AAAAC-GATGGAAAGAAAAGCTTTTCAT
1 TTGTCTTATTT-AAGGGATGAACTTTGATTCATTCACAAAACAG-TGGAAAGAAAAGCTTTTCAT
* ** * * * *
2210338 GCGACACCAAAGGTACAATGTCATGCATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTG
64 GCAACACCAAAGCAACAATATCTTGCATCCTAATG-AGGGAATATGTTTTTGGTGCCCAATCTAG
* *
2210403 ACAAGAATGGAGATTGTTACGAGAATCGATGC
128 AAAAGAATGGAGATTGTTACAAGAATCGATGC
* *
2210435 TTGTCTTTTTTAAGGGATGAATTTTGATT
1 TTGTCTTATTTAAGGGATGAACTTTGATT
2210464 TTAAAGAAAA
Statistics
Matches: 363, Mismatches: 115, Indels: 56
0.68 0.22 0.10
Matches are distributed among these distances:
156 1 0.00
157 13 0.04
158 82 0.23
159 167 0.46
160 83 0.23
161 13 0.04
162 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (159 bp):
TTGTCTTATTTAAGGGATGAACTTTGATTCATTCACAAAACAGTGGAAAGAAAAGCTTTTCATGC
AACACCAAAGCAACAATATCTTGCATCCTAATGAGGGAATATGTTTTTGGTGCCCAATCTAGAAA
AGAATGGAGATTGTTACAAGAATCGATGC
Found at i:2211303 original size:159 final size:158
Alignment explanation
Indices: 2210649--2213302 Score: 771
Period size: 159 Copynumber: 16.7 Consensus size: 158
2210639 ACGAATCTAG
* * *
2210649 AGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGG
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * *
2210714 GGAATAGTATGAGTATTCAAGTTTGGCTTTTTTAAGAGACAAACTTTGATTCTTTTAAAAATGAT
66 GG-ATTGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGT
* *
2210779 GAAAACAAAAGCTTTTCTTGC-AACACCAA
130 GGAAAGAAAAGCTTTTCTTGCGAA-ACCAA
* * * * * ** *
2210808 AGCATCAATGTCGTGTATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAAT-TTAGAAAAGAA
1 AGCAACAATATCATGCATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTT-GAAAAGAA
* * * * * ** ***
2210870 TGGAGATTATTACGAGAA-TCGATGCTTGTCTTATTTAAGGGATGAACTTCAAT-ATTAAGT-AA
63 TGGGGATT-GTATGAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTT---TGATTCTTTCAA
* * * **
2210932 AATA-GG-GCAAAGAAAAGATTTTC--GCCCAAAAGAA
123 AA-ACGGTGGAAAGAAAAGCTTTTCTTG-CGAAACCAA
* * * ** * * **
2210966 ACTCATCAATACCATTAATCCTAATGAGGAGAATGTGTTTATAGTGTG--TAATC-ACAAAATGA
1 A-GCAACAATATCATGCATCCTAATGAGAAGAATATGTTTA-AG-GTGCCTAATCTTGAAAA-GA
** * * * * *
2211028 ATGAAGATCAT-TACT-AGAA-TCTAGGTTTG-CTCATTTGAG-GCACGAACTTAGA--C-TTCA
62 ATGGGGAT--TGTA-TGAGAATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTTCA
*
2211085 CAAAATTTGGTGTG-AA-AAAAGCTTTTCTTGCGAAACCAA
122 -AAAA--CGGTG-GAAAGAAAAGCTTTTCTTGCGAAACCAA
* * *
2211124 AGC-ACTAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATG
1 AGCAAC-AATATCATGCATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATG
*
2211188 GGGAATTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGG
65 GGG-ATTGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGG
* *
2211253 TGGAAGGAAAAGCTTTTCTTGCGACACCAA
129 TGGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * **
2211283 AGCAACAATGTCATGCATCCTAATGA-AGGGAATGTGTTTTTGGAT-CCTAATCTTGAAAAGAAT
1 AGCAACAATATCATGCATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAAGAAT
** * * * * ** *
2211346 GGAAATTGTTATGAAAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT-TAAGT-AAAA
64 GGGGATTG-TATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--TTCAAAA
** * * * ** **
2211409 TTGG-GCAAAGAAAAGATTTTCATGTAAAAGAAA
125 ACGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAA
* ** ** * **
2211442 ATCATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATA-GTGCCTAATC-AAAAAATGAAT
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAAA-GAAT
** * * * *
2211505 GAAGATCAT-TACT-AGAATCCATGTTTGTCTCATTTGAG-GCACAAACTTAGA--CTTTACAAA
64 GGGGAT--TGTA-TGAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTT-CAAA
* * * *
2211565 AATTGGTGGGAA-AAAAGCTTTTCCTGCGAATCCAA
124 AA-CGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * * * * * *
2211600 AGCACCAATATCATGCATACAAATGAGAGGACTATGTTTAAGATGCCAAATCTTGAAAAGAGTGG
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATGG
* * * **
2211665 GGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAACGGT
66 GG-ATTGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGT
* *
2211730 GAAAAGAAAAGCTTTTCTTGCGACACCAA
130 GGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * * * **
2211759 AGCAATAATGTCAT-CTATCCTAAAGATAAGAATGTGTTTTTGGAT-CCTAATCTTGAAAAGAA-
1 AGCAACAATATCATGC-ATCCTAATGAGAAGAATATGTTTAAGG-TGCCTAATCTTGAAAAGAAT
* * ** *
2211821 GGGAGATTGTTATGAGAA-TCAATGCTTGTCTTATTTAAGGGATGAACTTTGATAT-TAAGT-AA
64 GGG-GATTG-TATGAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--TTCAA
* * * * **
2211883 AATA-GG-GCAAGGAAAAGATTTCCTTGC-AATAGAAA
123 AA-ACGGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAA
* * ** * * ** * *
2211918 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACA-GTGCCTAATC-ACAAATTGAAA
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAA-AGAAT
** ** * * * * * * *
2211981 GAAGATCAATACTG-GAATCCACGTTTAG-CTCATTTGAG-GCACGAACTTAGA--CATTACAAA
64 GGGGAT-TGTA-TGAGAATTCATGTTT-GTCTTATTTAAGAG-ACAAACTTTGATTC-TTTCAAA
* * * * **
2212041 AATTGATAGG-AAG-AAAGCCTTTCTGGTAAAACCAA
124 AA-CGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * * * ** *
2212076 AGCATCAATATCATGTATCTTTATGAGAAGACTACATTTATA-GTGCCTAATC-CGAAAAAGAAT
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTG-AAAAGAAT
* ** * * *
2212139 GGGGATTAGTATAACTATTCATGTTTCTCTTATTTAAACAGATAAACTTTGATTCTTTCAAAAAC
64 GGGGATT-GTATGAGAATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTTTCAAAAAC
* **
2212204 AGTGGAAAGAAAAGCTTTTCTTGCGACTCCAA
127 GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * ** * * *
2212236 AGCAACAATGTCATGCATCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATG
1 AGCAACAATATCATGCATCCTAATGAGA-AGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATG
** * * * * * * **
2212300 GGGATTGTTACAAGAATTGATGCTTGTCTTTTTTAAGGGTCGAA-TGTTGATT-TTAAAGAAAAT
65 GGGATTG-TATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTT--TCAAAA-
* * **
2212363 ACGGT--AAAGAAAAGATTTT-TATGCAAAAGAAA
125 ACGGTGGAAAGAAAAGCTTTTCT-TGCGAAACCAA
* * * ** * * * ** * *
2212395 ATCATCCATATCATTAATCTTAATGAGGAG-A-ATGTTTATA-GTGCCCAATC-ACAAATTGAAC
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAA-AGAAT
** ** * * * * ** * * ** *
2212456 GAAGATCAATACT-AGAATCCACGCTTGGCACATTTGAG-GCACAAACTTAGA-AATTACAAAAA
64 GGGGAT-TGTA-TGAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTTTCAAAAA
* * *
2212518 TTGGTAGG-AAG-AAAGCGTTTCTTGCAAAACCAA
126 -CGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * ** * ** ** * * *
2212551 AGCATCAATATCATGTATAGTTATGAGAAGGCTAAATTTACGGGGCCTAATCTTGAAAATAATGG
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATGG
* * * *
2212616 GGAATAGTATGAGTATTCATGTTTGACTTATTTTAGAGACAAACTTTGATTCTTTCAAAAACGGT
66 GG-ATTGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGT
* *
2212681 GGAAGGAAAAGCTTTTCTTGCGACACCAA
130 GGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * ** *
2212710 AGCAACAATGTCATGCATCCTAATGA-AGGGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAAT
1 AGCAACAATATCATGCATCCTAATGAGA-AGAATATGTTTAAGG-TGCCTAATCTTGAAAAGAAT
* ** ** * ** * *
2212773 GGAGATTGTTACAAGAA-TCGATGCCTGTCTTATTTAAGGGATGAATTTTGATAT-TAAGT-AAA
64 GGGGATTG-TATGAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--TTCAAA
* * * * **
2212835 ATA-GG-GCAAAGAAAAGATTTCCATGC-AATAGAAA
124 A-ACGGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAA
* * ** * * ** *
2212869 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATC-ACAAATTGAAT
1 AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTA-AGGTGCCTAATCTTGAAA-AGAAT
** ** * * * * * * *
2212932 GAAGATCAATACT-AGAATCCACGTTTGGCTCATTT--GAGGCATGAACTTAGA--CATTACAAA
64 GGGGAT-TGTA-TGAGAATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTC-TTTCAAA
* * *
2212992 AATTGGTAGG-AAG-AAAGCCTTTCTTGCAAAACCAA
124 AA-CGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * * * ** ** ** *
2213027 AG-AATTAATATCGTGTATCCTTATGAGAAGACTACATTTTTGGTGTGTAATCTGGAAAAGAATG
1 AGCAA-CAATATCATGCATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATG
* * * *
2213091 GGGATTAGTATAACAATTCATATTTGTCTTATTTAAACAGACAAACTTTGATTCTTTCAAAAACG
65 GGGATT-GTATGAGAATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTTTCAAAAACG
* * *
2213156 GTGAAAAGAAAAGCTTTTCATGCGACACCAA
128 GTGGAAAGAAAAGCTTTTCTTGCGAAACCAA
** * ** * * *
2213187 AGGTACAATGTCATGCATCCTAAT-A-AAGGAAATATGTTTTTGATTCCCAATCTTGAAAAGAAT
1 AGCAACAATATCATGCATCCTAATGAGAA-G-AATATGTTTAAGGTGCCTAATCTTGAAAAGAAT
* * * * * * *
2213250 GGAGATTGTTACGAGAA-TCGATGCTTGTCTTTTTTAAGGGACGAATTTTGATT
64 GGGGATTG-TATGAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATT
2213303 TTAAAGAAAA
Statistics
Matches: 1769, Mismatches: 537, Indels: 378
0.66 0.20 0.14
Matches are distributed among these distances:
153 1 0.00
154 3 0.00
155 15 0.01
156 50 0.03
157 140 0.08
158 426 0.24
159 869 0.49
160 237 0.13
161 27 0.02
162 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
AGCAACAATATCATGCATCCTAATGAGAAGAATATGTTTAAGGTGCCTAATCTTGAAAAGAATGG
GGATTGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTG
GAAAGAAAAGCTTTTCTTGCGAAACCAA
Found at i:2211705 original size:951 final size:946
Alignment explanation
Indices: 2208678--2213648 Score: 6736
Period size: 951 Copynumber: 5.3 Consensus size: 946
2208668 GTGTTTATTG
* * * * * **
2208678 GAATCCATTTTTGTCTCATTTGAGGTA-AGAACCTAGACTTTACAAAAATAGGGGGGGCGGAAAA
1 GAATCCATGTTTGTCTCATTTGAGGCACA-AACTTAGACTTTACAAAAAT-TGGTGGG-AAAAAA
* ** * *
2208742 GCCTTTCTTGCAAATCCAAAGCACCAATATTGTGTATCCTAATGAAAAGACTATGTTTAAGGTGA
63 GCCTTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGC
* *
2208807 CTAATCTTGAAAAGAATGGGGAATAGTTTGAGCATTCAAGTTTGTCTTATTTAAGAGGA-AAACT
128 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGA-GACAAACT
* * * *
2208871 TTGATTGTTTCAAAAATGGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCAAT-AATGTCAT-
192 TTGATTCTTTCAAAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATG
* *
2208934 CATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAG
256 CATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAA
2208999 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTT
321 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTT
* * * *
2209064 CCATGCAATAGAAAATCAACAATATCATTTATCCTACTGAGGAGAATGCGTTTCA-AATGCCTAA
386 CCATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT-ATAGTGCCTAA
* * * *
2209128 TCACAAATTGAATAAAGATCAATACTACAAGCCACGTTTGGCTCATTTGAGACACGAACTTAGAC
450 TCACAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGAC
* *
2209193 ATTACAAAAATTGGTAGGAAGAAAGCCTTTCTGGCAAAACCAAAGCATCAATATCATGTATCCTT
515 ATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT-AATATCGTGTATCCTT
* *
2209258 ATGAGATGACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATAGCTATTCATGT
579 ATGAGAAGACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATAACTATTCATGT
* * * *
2209323 TTATCTTATTTAAATAAACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCATTTCTTGC
644 TTGTCTTATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
** * * * *
2209388 GACACCAAAGCAACAATGTCATGTGTCCTAATGAAGAGAAAGTGTTTTAGGTTCCTAATCTTGAA
709 GACACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * *
2209453 AAGAATGGGGATTGTTACCAGAATCAATACTTGTC-TTTTTAAGGGATGAATGTTGATTTTAAAG
774 AAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAAT-TTGATTTTAAAG
* * ** * *
2209517 AAAATATGGCAAAGGAAAGATTTCCACGCGAAAGAAAATCATCCATATCATTAATCTTAATGAGG
838 AAAATAGGGCAAA-GAAAGATTT--A-G-AAAAGAAAATCATTAATATCATTTATCCTAATGAGG
* * * * * *
2209582 AGAATGTGTTTATAGTGCCCAATCACAAATTGAACGAAGATCAATACTA
898 AGAACGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
* * * * * * *
2209631 GAATCCACGTTTGGCTCATTTGAGGCACGAACCTAGA-TATTACAAAAATTTGTCGGAAGAAAGC
1 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACT-TTACAAAAATTGGTGGGAAAAAAGC
* * * * * * *
2209695 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACCATG-TCAATGGGGCC
65 CTTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAA-GGTGCC
* * *
2209759 TAATCTTGAAAATAAAGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
129 TAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
2209824 GATTCTTTCAAAAAC-AGTGGAAGGAAAAGCTTTTCTTGCAACACCAAAGCAACAATGTCTTGCA
194 GATTCTTTCAAAAACGA-TGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCA
* *
2209888 TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATC
258 TCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
*
2209953 GATGCTTGTCTTATTTAAGGGATGAACTTTGATATAAAGTAAAATAGGGCAAAGAAAAGATTTCC
323 GATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCC
2210018 ATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
388 ATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
2210083 CAAATTGAATGAAGATCAATACAAGAATCCACATTTGGCTCATTTGAGGCATGAACTTAGACATT
453 CAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACATT
*
2210148 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGAATTAATATCGTGTATCCTTATG
518 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCA-TAATATCGTGTATCCTTATG
* * ** * *
2210213 AGAAAACTACATTTTTGGTGTGTAATCCAGAAAAGAATGGGGATTAGTATAACAATTCATGTTTG
582 AGAAGACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATAACTATTCATGTTTG
* *
2210278 TCTTATTTAAACAGACAAACTTTGATTCTTTCAAAAACGATGGAAAGAAAAGCTTTTCATGCGAC
647 TCTTATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
** * *
2210343 ACCAAAGGTACAATGTCATGCATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTGACAAG
712 ACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
2210408 AATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAATTTTGATTTTAAAGAAA
777 AATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAA-TTTGATTTTAAAGAAA
* *
2210473 ATAGGGC------A-A---AGAAAAG-AAATTATTAATATCATTTATCCTAATGAGGAGAACGTC
841 ATAGGGCAAAGAAAGATTTAGAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAACGTG
* *
2210527 TTTATAGTACCTAATCAAAAAATGAGTGAAGATCATTACTA
906 TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
* * *
2210568 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAAAGAGCC
1 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * *
2210633 TTTCCTACGAATCTAGAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
66 TTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
* *
2210698 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGGCTTTTTTAAGAGACAAACTTTGA
131 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
2210763 TTCTTTTAAAAATGATGAAAACAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCC
196 TTCTTTCAAAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCC
*
2210828 TAATGAAGAGAATGTGTTTTTGGATCCCAAT-TTAGAAAAGAATGGAGATTATTACGAGAATCGA
261 TAATGAAGAGAATGTGTTTTTGGATCCCAATCTT-GAAAAGAATGGAGATTGTTACGAGAATCGA
** * **
2210892 TGCTTGTCTTATTTAAGGGATGAACTTCAATATTAAGTAAAATAGGGCAAAGAAAAGATTTTCGC
325 TGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCAT
* * * * * **
2210957 CCAAAAGAAACTCATCAATACCATTAATCCTAATGAGGAGAATGTGTTTATAGTGTGTAATCACA
390 GCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * *
2211022 AAATGAATGAAGATCATTACTAGAATCTAGGTTT-GCTCATTTGAGGCACGAACTTAGAC-TTCA
455 AATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACATT-A
* * * * *
2211085 CAAAATTTGGT-GTGAAAAAAGCTTTTCTTGCGAAACCAAAGCACTAATATCGTGTATCCTAATG
519 CAAAAATTGGTAG-GAAGAAAGCCTTTCTTGCAAAACCAAAGCA-TAATATCGTGTATCCTTATG
** * ** * *
2211149 AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATT-GTATGAGTATTCATGTTT
582 AGAAGACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGG-ATTAGTATAACTATTCATGTTT
* *
2211213 GTCTTATTT-AAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGA
646 GTCTTATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* *
2211277 CACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCTAATCTTGAAAA
711 CACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * * *
2211342 GAATGGAAATTGTTATGAAAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGTA
776 GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAA-TTTGATTTTAAAG-A
* *
2211406 AAATTGGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATTAATATCATTTATCCTAATGAGAA
839 AAATAGGGCAAAG-AAAGA-TTT-A-G-AAAAGAAAATCATTAATATCATTTATCCTAATGAGGA
*
2211471 GAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
899 GAACGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
*
2211519 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCT
1 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * * * *
2211584 TTTCCTGCGAATCCAAAGCACCAATATCATGCATACAAATGAGAGGACTATGTTTAAGATGCCAA
66 TTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
*
2211649 ATCTTGAAAAGAGTGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGA
131 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGA
** *
2211714 TTCTACCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAAT-AATGTCAT-CTAT
196 TTCTTTCAAAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGC-AT
* * * *
2211777 CCTAAAGATA-AGAATGTGTTTTTGGATCCTAATCTTGAAAAGAAGGGAGATTGTTATGAGAATC
259 CCTAATGA-AGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
* *
2211841 AATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAGGAAAAGATTTCC
323 GATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCC
* *
2211906 TTGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCA
388 ATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
2211971 CAAATTGAAAGAAGATCAATACTGGAATCCACGTTTAGCTCATTTGAGGCACGAACTTAGACATT
453 CAAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACATT
* * * * *
2212036 ACAAAAATTGATAGGAAGAAAGCCTTTCTGGTAAAACCAAAGCATCAATATCATGTATCTTTATG
518 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT-AATATCGTGTATCCTTATG
*
2212101 AGAAGACTACATTTATAGTGCCTAAT-CCGAAAAAGAATGGGGATTAGTATAACTATTCATGTTT
582 AGAAGACTACATTTATGGTGCCTAATCCCG-AAAAGAATGGGGATTAGTATAACTATTCATGTTT
* * *
2212165 CTCTTATTTAAACAGATAAACTTTGATTCTTTCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGA
646 GTCTTATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* *
2212230 CTCCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAA
711 CACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * *
2212295 GAATGGGGATTGTTACAAGAATTGATGCTTGTCTTTTTTAAGGG-TCGAATGTTGATTTTAAAGA
776 GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGAT-GAAT-TTGATTTTAAAGA
* * ** * *
2212359 AAATACGGTAAAGAAAAGATTTTTATGCAAAAGAAAATCATCCATATCATTAATCTTAATGAGGA
839 AAATAGGGCAAAG-AAAGA--TTTA-G-AAAAGAAAATCATTAATATCATTTATCCTAATGAGGA
* * * * *
2212424 GAA--TGTTTATAGTGCCCAATCACAAATTGAACGAAGATCAATACTA
899 GAACGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
* * * * ** * * *
2212470 GAATCCACGCTTGGCACATTTGAGGCACAAACTTAGAAATTACAAAAATTGGTAGGAAGAAAGCG
1 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * ** * * ** * *
2212535 TTTCTTGCAAAACCAAAGCATCAATATCATGTATAGTTATGAGAAGGCTAAATTTACGGGGCCTA
66 TTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
* * * *
2212600 ATCTTGAAAATAATGGGGAATAGTATGAGTATTCATGTTTGACTTATTTTAGAGACAAACTTTGA
131 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
2212665 TTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCATCC
196 TTCTTTCAAAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCC
* *
2212730 TAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCGAT
261 TAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
* *
2212795 GCCTGTCTTATTTAAGGGATGAATTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATG
326 GCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATG
2212860 CAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
391 CAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
*
2212925 ATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACATTACA
456 ATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACATTACA
*
2212990 AAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGAATTAATATCGTGTATCCTTATGAGA
521 AAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCA-TAATATCGTGTATCCTTATGAGA
* ** ** * *
2213055 AGACTACATTTTTGGTGTGTAATCTGGAAAAGAATGGGGATTAGTATAACAATTCATATTTGTCT
585 AGACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCT
* *
2213120 TATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTTTCATGCGACACC
650 TATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
** * * * *
2213185 AAAGGTACAATGTCATGCATCCTAATAAAGGAAATATGTTTTTGATTCCCAATCTTGAAAAGAAT
715 AAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
*
2213250 GGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGACGAATTTTGATTTTAAAGAAAATA
780 GGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAA-TTTGATTTTAAAGAAAATA
*
2213315 GGGC------A-A---AGAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAACGTCTTT
844 GGGCAAAGAAAGATTTAGAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAACGTGTTT
* *
2213370 ATAGTACCTAATTAAAAAATGAATGAAGATCATTACTA
909 ATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
* ** * *
2213408 GAATCCATGTTTGTCTCATTTGAAGCATGAACTTAGACTCTACAAAAATTGGTGGGAAAAGAGCC
1 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * *
2213473 TTTCCTGCGAATCTAGAGCACCAATATCATGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
66 TTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
* * * * *
2213538 ATCTTGAGAAGAATAGGGAATAGTATGAGTATTCAGGTTTGGCTTGTTTAAGAGACAAACTTTGA
131 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
2213603 TTCTTTCGAAAACGATGAAACGAAAAGCTTTTCTCGCGACACCAAA
196 TTCTTTCAAAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAA
2213649 TGATGAAAAC
Statistics
Matches: 3526, Mismatches: 433, Indels: 133
0.86 0.11 0.03
Matches are distributed among these distances:
934 3 0.00
935 174 0.05
936 175 0.05
937 492 0.14
938 245 0.07
939 1 0.00
940 1 0.00
942 1 0.00
943 2 0.00
944 1 0.00
945 1 0.00
946 1 0.00
948 1 0.00
949 1 0.00
950 13 0.00
951 1458 0.41
952 652 0.18
953 296 0.08
954 8 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (946 bp):
GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
TTTCCTGCAAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTA
ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCTTTCAAAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCC
TAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT
GCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATG
CAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
ATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACATTACA
AAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATAATATCGTGTATCCTTATGAGAA
GACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTT
ATTTAAACAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
AAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
GAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAATTTGATTTTAAAGAAAATAGG
GCAAAGAAAGATTTAGAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAACGTGTTTAT
AGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
Found at i:2226266 original size:42 final size:42
Alignment explanation
Indices: 2226211--2226329 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2226201 TTCTTCTCTC
* *
2226211 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2226253 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2226295 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2226330 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2226270 original size:12 final size:11
Alignment explanation
Indices: 2226244--2226319 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2226234 TCTATTATCT
*
2226244 CTCCTGTCTCTC
1 CTCCTATCTC-C
2226256 CTCCTATCATCC
1 CTCCTATC-TCC
2226268 CTCCTATCT--
1 CTCCTATCTCC
*
2226277 CTACTATCT--
1 CTCCTATCTCC
*
2226286 CTCCTGTCTCTC
1 CTCCTATCTC-C
2226298 CTCCTATCATCC
1 CTCCTATC-TCC
*
2226310 CTCCTCTCTC
1 CTCCTATCTC
2226320 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2226271 original size:24 final size:24
Alignment explanation
Indices: 2226235--2226320 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2226225 CCTCCTCTCT
* *
2226235 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2226259 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2226280 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2226301 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2226321 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2226295 original size:18 final size:18
Alignment explanation
Indices: 2226226--2226296 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2226216 CCTGTCATCC
* *
2226226 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2226244 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2226266 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2226286 CTCCTGTCTCT
1 CTCCTGTCTCT
2226297 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2228928 original size:159 final size:158
Alignment explanation
Indices: 2228220--2230347 Score: 538
Period size: 159 Copynumber: 13.4 Consensus size: 158
2228210 GAAAACTACA
* *** * * * * *
2228220 TTTATGGTGCCTAATCCCAAAAAGAATGGGGATTATTATGAGTATTCAAGTTTGTCTTAATTAAG
1 TTTATGGTGCCCAATCTTGAAAAGAATGGAGATTGTTATGAG-AATCATGTTTGTCTTATTTAAG
* * * * * * *
2228285 AGACAAACTTTGATTCTATAAAAAATGGTGGATGGTAAAGCTTTTCTTGCGACACCAAAGCAACA
65 AGACGAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAAGCAACA
*
2228350 ATGTCATGCATCCTAATGAAGGGAATATG
130 ATATCATGCATCCTAATGAAGGGAATATG
* * * * * * * *
2228379 TTTTTGGCT-CCCATTCTTTAAAAGAATAGAGATTGTCACGAGAATCGATGCTTGTCTTTTTTAA
1 TTTATGG-TGCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAA
* * ** * * * ** *
2228443 GTGATGAACTTTGATT-TTAAAGAAAATAC-G-GCAAAGAAAAG-ATTTCTATGC-AAAAAAAAT
64 GAGACGAACTTTGATTCTT--TCAAAA-ACGGTGGAAGGAAAAGCTTTTCT-TGCGAAACCAAAG
* * ** * *
2228503 CATCCATATCATTAATCTTAAT-AAGGAGAATGTG
125 CAACAATATCATGCATCCTAATGAAGG-GAATATG
* ** ** * ** *
2228537 TTTATAGTGCGTAATC-ACAAAATGAATGAAGATCATTACT-AGAAT-ATGGGTTTGTCTCATTT
1 TTTATGGTGCCCAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCAT--GTTTGTCTTATTT
* * *
2228599 GAG-GCACGAACTTAGA--C-TTCACAAAATTTGGTGGGAA--AAAAGCTTTTCTTGCGAAACCA
62 AAGAG-ACGAACTTTGATTCTTTCA-AAAA--CGGT-GGAAGGAAAAGCTTTTCTTGCGAAACCA
* ** * * *
2228658 AAGCACCAATATTGTGTATCCTAATG-AGAAGACTATG
122 AAGCAACAATATCATGCATCCTAATGAAG-GGAATATG
* * * ** * *
2228695 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAACAG-TATGCGTATTCATGTTTGTCTTATTTAA
1 TTTATGGTGCCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAA
* * * * *
2228759 AAAACAAACTTTGATTCTTTCCAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAAC
64 GAGACGAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAAGCAAC
* *
2228824 AATGTCATGCATCCTAATGAAGGGAATGTG
129 AATATCATGCATCCTAATGAAGGGAATATG
* *
2228854 TTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAA
1 TTTATGG-TGCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAA
* * * * * * * * **
2228918 GGGATGAACTTTGATAT-TAAGT-AAAATA-GG-GCAAAGAAAAGATTTCCATGC-AATAGAAAA
64 GAGACGAACTTTGAT-TCT--TTCAAAA-ACGGTGGAAGGAAAAGCTTTTCTTGCGAA-ACCAAA
* * ** * *
2228978 TCATCAATATCATTTATCCTAACG-AGGAGAATGTG
124 GCAACAATATCATGCATCCTAATGAAGG-GAATATG
* * ** * * *** * * * * *
2229013 TTTATAGTGCCTAATC-ACAAATTGAATGAAGATCAATACT-AGAATCCACGTTTGGCTCAATTG
1 TTTATGGTGCCCAATCTTGAAA-AGAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTA
* * * * * * * * *
2229076 AG-GCATGAACTTAGA-TATTACAAAAATTGGTAGGAA-G-AAAGCCTTTCTTGCGAATCTAGAG
63 AGAG-ACGAACTTTGATTCTTTCAAAAA-CGGT-GGAAGGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * *
2229137 TACCAATATCATGTATCCTAATG-AGAAGACTATG
125 CAACAATATCATGCATCCTAATGAAG-GGAATATG
* * * * * * *
2229171 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG-TATGAGTATTCAAGTTTGGCTT-TTTCA
1 TTTATGGTGCCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTT-A
* * * * ** * * *
2229234 AAAGACAAACTTTGATTCTTTCAAAAATGATAAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
63 AGAGACGAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAAGCAA
* * * * * *
2229299 CAATGTCATGTATCCCAACGAAGAGAATGTG
128 CAATATCATGCATCCTAATGAAGGGAATATG
* * * ** * *
2229330 TTTTTGGAT-CCCAATCTGGAAAAGAATGGAGATTATTACAAGAATCGATGCTTGTCTTATTTGA
1 TTTATGG-TGCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAA
** * * * *** **
2229394 GAGATAAACTTTGATT-TTAAGT-AAAATA-GG-GCAAAGAAAAGATTTTCACAC-AAAAGAAAC
64 GAGACGAACTTTGATTCTT---TCAAAA-ACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAA-
* * ** *
2229454 TCATCAATATCATTAATCTTAATG-AGGAGAATATG
124 GCAACAATATCATGCATCCTAATGAAGG-GAATATG
* * * ** ** *** * * *
2229489 TTTATAGTGCCTATTC-ACAAAATGAATATAGATCAATATTAGAATCCACGTCTCG-C--AGTTT
1 TTTATGGTGCCCAATCTTGAAAA-GAATGGAGATTGTTATGAGAAT-CATGT-TTGTCTTA-TTT
* * * * *
2229550 -TGAGGCGCTAACTTAGA--CTTTACAAAAATTGGTGGGAA-G-AAAGCTTTTCTTGCAAAACCA
62 AAGAGACG--AACTTTGATTCTTT-CAAAAA-CGGT-GGAAGGAAAAGCTTTTCTTGCGAAACCA
* ** * ** * * * **
2229610 AAGCAGCAACGTCGTATATCCTTATG-AGAAGACTACA
122 AAGCAACAATATCATGCATCCTAATGAAG-GGAATATG
* * * *
2229647 TTTATGGTGCCTAATTTTGAAAAGAATGGGGATTAGTT-TGAGTATTCATGTTTGTCTTATTTAA
1 TTTATGGTGCCCAATCTTGAAAAGAATGGAGATT-GTTATGAG-AATCATGTTTGTCTTATTTAA
* * * ** * *
2229711 GAGACAAACTTTGATTCTTTCAAAAATGTTGGAAAAAAAAGCTTTTCTTACGACACCAAAGCAAC
64 GAGACGAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAAGCAAC
* * *
2229776 AATTTCTTGCATCCTAATGAAGGGAATGTG
129 AATATCATGCATCCTAATGAAGGGAATATG
* * * * * *
2229806 TTTTTGGTTCCCAATCTTAAAAAAGCATGGAGATTGTTAGGGGAATCGATGTTTGTCTTATTTAA
1 TTTATGGTGCCCAATCTT-GAAAAGAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAA
**** ** * ** ** * * * * *
2229871 G-GCACGAACTTTGATAT-TAGGTAAAATAG-GGCAGAGTTAATATTTCCATG-TAAGACAAAAT
64 GAG-ACGAACTTTGAT-TCTTTCAAAAACGGTGGAAG-GAAAAGCTTTTCTTGCGAA-ACCAAAG
** ** * *
2229932 CATTAATATCATTTACCCTAATG-AGGAGAATGTG
125 CAACAATATCATGCATCCTAATGAAGG-GAATATG
* * ** * *** * * *
2229966 TTTATAGTGCCGAATC-ACAAAATGAATGAAGATCAATACT-AGAATCCACGTCTGGCTCT-TTT
1 TTTATGGTGCCCAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCT-TATTT
* ** * ** * *
2230028 GAGTCACGAACTTAGA--CTTTACAAAATTTGGTGGGAA-G-AAAGCTTTTCTTGCAAAAGCAAA
62 AAGAGACGAACTTTGATTCTTT-CAAAA-ACGGT-GGAAGGAAAAGCTTTTCTTGCGAAACCAAA
* * * ** * * * **
2230089 GCAGCAATGTCGTATATCCTTATG-AGAAGACTACA
124 GCAACAATATCATGCATCCTAATGAAG-GGAATATG
* * * * *
2230124 TTTATGGTGCCTAAT-TCCGAAAAGAATGGGGATTAGTT-TGAGTATTCATGTTTGTCTTATTTG
1 TTTATGGTGCCCAATCT-TGAAAAGAATGGAGATT-GTTATGAG-AATCATGTTTGTCTTATTTA
* * * * ** *
2230187 AGAGACAAACTTTGGTTCTATCAAAAACGGTGAAAATAAAAGCTTTTCTTGCGACACCAAAGCAA
63 AGAGACGAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAAGCAA
* * *
2230252 CAATTTCATGCATCGTAATGAAGGGAATGTG
128 CAATATCATGCATCCTAATGAAGGGAATATG
* * * * * *
2230283 TTTTTGGTTCCCAATCTTAAAAAGGAATGGAGATTGTTACGAGAATGATGCTTGTCTTATTTAAG
1 TTTATGGTGCCCAATCTTGAAAA-GAATGGAGATTGTTATGAGAATCATGTTTGTCTTATTTAAG
2230348 GGATAAACAT
Statistics
Matches: 1378, Mismatches: 451, Indels: 280
0.65 0.21 0.13
Matches are distributed among these distances:
154 2 0.00
155 4 0.00
156 5 0.00
157 54 0.04
158 446 0.32
159 682 0.49
160 173 0.13
161 12 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
TTTATGGTGCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCATGTTTGTCTTATTTAAGA
GACGAACTTTGATTCTTTCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGAAACCAAAGCAACAA
TATCATGCATCCTAATGAAGGGAATATG
Found at i:2229201 original size:476 final size:476
Alignment explanation
Indices: 2227949--2230747 Score: 3469
Period size: 476 Copynumber: 5.9 Consensus size: 476
2227939 TTTCATCATT
* * * *
2227949 ATGCTTGTCTTATTTAAGAGATGAACTTCGATATTAAGTAAAATAGGTCAAAGAAAAGATTACCA
1 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* * * * **
2228014 TGCAAAAGGAAAGCATCAATATCATTAATCTTAACGAGGAGAATGTGTTTATAGTGTTTAATCAC
66 TGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
2228079 AAAATGAATGAAGATCAATACCAGAACCCACGTTTGGC-CTATTTGAGGCACAAACTTAGACTTT
131 AAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTC-ATTTGAGGCACGAACTTAGACTTT
* ** * *
2228143 ACAAAAATTGTGTAGGAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATCGTGTATCTTTAT
195 ACAAAAATTG-GTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTAT
* *** * *
2228208 GAGAAAACTACATTTATGGTGCCTAATCCCAAAAAGAATGGGGATTATTATGAGTATTCAAGTTT
259 GAGAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * ** *
2228273 GTCTTAATTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGATGGTAAAGCTTTTCTTGCGAC
324 GTCTTATTTAAAAGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * *
2228338 ACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATATGTTTTTGGCTCCCATTCTTTAAAAG
389 ACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAAG
* *
2228403 AATAGAGATTGTCACGAGAATCG
454 AATGGAGATTGTTACGAGAATCG
* * * * *
2228426 ATGCTTGTCTTTTTTAAGTGATGAACTTTGATTTTAAAG-AAAATACGGCAAAGAAAAGATTTCT
1 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAAAGAAAAGATTTCC
* * * *
2228490 ATGCAAAA-AAAATCATCCATATCATTAATCTTAATAAGGAGAATGTGTTTATAGTGCGTAATCA
65 ATGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* **** * *
2228554 CAAAATGAATGAAGATCATTACTAGAATATGGGTTTGTCTCATTTGAGGCACGAACTTAGACTTC
130 CAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTT
* * * * * * *
2228619 ACAAAATTTGGTGGGAAAAAAGCTTTTCTTGCGAAACCAAAGCACCAATATTGTGTATCCTAATG
195 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTATG
** * ** *
2228684 AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAACAGTATGCGTATTCATGTTTG
260 AGAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * *
2228749 TCTTATTTAAAAAACAAACTTTGATTCTTTCCAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACA
325 TCTTATTTAAAAGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
*
2228814 CCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGA
390 CCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAAGA
* *
2228879 ATGGAGATTGTTATGAGAATCA
455 ATGGAGATTGTTACGAGAATCG
2228901 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
1 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* * *
2228966 TGCAATAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCAC
66 TGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
2229031 AAATTGAATGAAGATCAATACTAGAATCCACGTTTGGCTCAATTGAGGCATGAACTTAGA-TATT
131 AAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACT-TT
* * * * * * *
2229095 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAATCTAGAGTACCAATATCATGTATCCTAATG
195 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTATG
** * * *
2229160 AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTG
260 AGAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * **
2229225 GCTT-TTTCAAAAGACAAACTTTGATTCTTTCAAAAATGATAAAAAGAAAAGCTTTTCTTGCGAC
325 TCTTATTT-AAAAGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * **
2229289 ACCAAAGCATCAATGTCATGTATCCCAACGAAGAGAATGTGTTTTTGGATCCCAATCTGGAAAAG
389 ACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAAG
* *
2229354 AATGGAGATTATTACAAGAATCG
454 AATGGAGATTGTTACGAGAATCG
* * * * *
2229377 ATGCTTGTCTTATTTGAGAGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTTCA
1 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
** * * * *
2229442 CACAAAAGAAACTCATCAATATCATTAATCTTAATGAGGAGAATATGTTTATAGTGCCTATTCAC
66 TGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * *** * *
2229507 AAAATGAAT-ATAGATCAATATTAGAATCCACGTCTCGCAGTTTTGAGGCGCTAACTTAGACTTT
131 AAAATGAATGA-AGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTT
* * * ** *
2229571 ACAAAAATTGGTGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCAGCAACGTCGTATATCCTTATG
195 ACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTATG
* *
2229636 AGAAGACTACATTTATGGTGCCTAATTTTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTG
260 AGAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * *
2229701 TCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAATGTTGGAAAAAAAAGCTTTTCTTACGACA
325 TCTTATTTAAAAGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
2229766 CCAAAGCAACAATTTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAAG
390 CCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTT-AAAAAG
* * *
2229831 CATGGAGATTGTTAGGGGAATCG
454 AATGGAGATTGTTACGAGAATCG
* * * * * ** *
2229854 ATGTTTGTCTTATTTAAGGCACGAACTTTGATATTAGGTAAAATAGGGCAGAGTTAATATTTCCA
1 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* * * * * * *
2229919 TGTAAGACAAAATCATTAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCGAATCAC
66 TGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
2229984 AAAATGAATGAAGATCAATACTAGAATCCACGTCTGGCTCTTTTGAGTCACGAACTTAGACTTTA
131 AAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTA
* * * * * * *
2230049 CAAAATTTGGTGGGAAGAAAGCTTTTCTTGCAAAAGCAAAGCAGCAATGTCGTATATCCTTATGA
196 CAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTATGA
* *
2230114 GAAGACTACATTTATGGTGCCTAAT-TCCGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTG
261 GAAGACTACATTTATGGTGCCTAATCT-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * * * * *
2230178 TCTTATTTGAGAGACAAACTTTGGTTCTATCAAAAACGGTGAAAATAAAAGCTTTTCTTGCGACA
325 TCTTATTTAAAAGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
2230243 CCAAAGCAACAATTTCATGCATCGTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGG
390 CCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAA-G
2230308 AATGGAGATTGTTACGAGAAT-G
454 AATGGAGATTGTTACGAGAATCG
* * * * *
2230330 ATGCTTGTCTTATTTAAGGGATAAACATTGATATTAAGTAAAATAGGGCAAAGATAAGATTTTCG
1 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
* * * *
2230395 TGCAATAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGGCTAATCA-
66 TGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * * * * * *
2230459 TAATTGAATGACGATCATTACTAGAAGCTATGTTTGTCTCATTTGAGGCATGAACTTAGACATTA
131 AAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTA
* ** * ** *
2230524 CAAAAATCGGTAGGAAGAAAGCCTTTCTTATAAAACCAAAGGATTAATACCGTGTATCCTTATGA
196 CAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTATGA
* * * * * ** * * * *
2230589 GAAAACTACATTTTTGTTGCATAGTCCGGAAAAGACTGGGGATTAGTATAACTATTCATATTTGT
261 GAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
*
2230654 CTTA--TAAACAGACAAACTTTGATTCTTTCAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACA
326 CTTATTTAAA-AGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
* *
2230717 CCAAAGAAACAATGTCATGCATCCTGATGAA
390 CCAAAGCAACAATGTCATGCATCCTAATGAA
2230748 AACCAATGAA
Statistics
Matches: 2004, Mismatches: 303, Indels: 33
0.86 0.13 0.01
Matches are distributed among these distances:
473 2 0.00
474 78 0.04
475 461 0.23
476 956 0.48
477 503 0.25
478 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCA
TGCAAAAGAAAATCATCAATATCATTAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTA
CAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTTATGA
GAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
CTTATTTAAAAGACAAACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
CAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAAGAA
TGGAGATTGTTACGAGAATCG
Found at i:2232927 original size:159 final size:159
Alignment explanation
Indices: 2232286--2233520 Score: 440
Period size: 159 Copynumber: 7.8 Consensus size: 159
2232276 CCATTCTTGT
** * * * *
2232286 TTGTCTTATTTAAAAAGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTGT
1 TTGTCTTATTT-AGGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGATTTTCTTGC
* * * * * * * * *
2232351 GACAGCAAAA-CAACAATGTC-TTGCATCCTAATGAAGGGAAGGTGTTTTT-GGTTCCAAATCTT
64 AACA-CAAAAGCATCAATATCATT-TATCCTAATGAAGAGAATGTGTTTTTAGATGCCCAATCTT
** *
2232413 AGAAAAGAATGGAGATTGTTATGAGAATCGATGT
127 -GAAAAGAATAAAGATTGTTATGAGAATCGATGC
* ** * * * *
2232447 TTGTATTATTTAAGG-GATGAACTTTGA--TATTAAGAACAATGGGGCAAAGAAAAGATTTTCAT
1 TTGTCTTATTT-AGGAGACAAACTTTGATTTATCAAAAAC-A-GTGG-AAAGAAAAGATTTTCTT
* * * * * * * *
2232509 GTAAAAGAAAATCAAT-AATATCATTTATCGTAACG-AGAAGAATGTGTTTATAG-TGCCTAATC
62 GCAACACAAAAGC-ATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTTTAGATGCCCAATC
* * * ** * **
2232571 --AAACAATGGATGAAGATCATTACT-AGAATCCATTT
125 TTGAA-AA-GAATAAAGATTGTTA-TGAGAATCGATGC
* * * ** * **
2232606 TTGTCTCATTTGAGG-CACAAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTG
1 TTGTCTTATTT-AGGAGACAAACTTTGA-TTTATCAAAAA-CAGTGGAAAGAAAAGATTTTCTTG
* * * * * * * * *
2232668 CGAATC-C-AAAGCACCAATATCGTGTATACTAATG-AGAAGACTATG--TTTACACTACCTAAT
63 C-AA-CACAAAAGCATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTTTAGA-TGCCCAAT
*** * * * *
2232728 CTTGAAAAGAATGGGGAATAGTT-TTAGTATTC-ATGT
124 CTTGAAAAGAATAAAG-ATTGTTATGAG-AATCGATGC
2232764 TTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCA
1 TTGTCTTATTTAGGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCA
* * * *
2232829 ACACAAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGCGTTTTTGGAT-CCCAATCTTGAA
65 ACACAAAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTAGATGCCCAATCTTGAA
2232893 AAGAATAAAGATTGTTATGAGAATCGATGC
130 AAGAATAAAGATTGTTATGAGAATCGATGC
** * * *
2232923 TTGTCTTATTTAAGG-GATGAACTTTGATGTTAAGT-AAAATA-AG-GCAAAGAAAAGATTTCCA
1 TTGTCTTATTT-AGGAGACAAACTTTGAT-TT-A-TCAAAA-ACAGTGGAAAGAAAAGATTTTCT
* * * * * * * *
2232984 TGTAAAACGAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATC-
61 TGCAACACAAAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTAGATGCCCAATCT
** * ** * *
2233047 AAAAAATGAATGAAGATCATTACT-AGAATCCATGT
126 TGAAAA-GAATAAAGATTGTTA-TGAGAATCGATGC
* * * * ** * **
2233082 TTGTCTTATTTA--AGGCTTGAACTTAGACTTT-CCAAAAATTGGTGGGAA-AAAAGCCTTTCTT
1 TTGTCTTATTTAGGAGAC--AAACTTTGA-TTTATCAAAAA-CAGTGGAAAGAAAAGATTTTCTT
* ** * * * * * *
2233143 GCAA-TCTGAAGCACCAATATCATTTATTCTAATG-AGAAGACTATG-TTTAAGATGCCTAATCT
62 GCAACACAAAAGCATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTTTAGATGCCCAATCT
** * * * *
2233205 TGAAAAGAATAGGGAATAG-TATGAGTATTC-AAGT
126 TGAAAAGAATAAAG-ATTGTTATGAG-AATCGATGC
* * * * * * * *
2233239 TTGACTTATTTAAGAGGCAAACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAGGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCA
* * * * *
2233304 ACCCCAAAGCAAT-AATGTCATCTATCCTAATGAATAGAATGTGTTTTT-GCAT-CCCAATCTTG
65 ACACAAAAGC-ATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTAG-ATGCCCAATCTTG
** *
2233366 AAAAGAATGGAGATTGTTACGAGAATCGATGC
128 AAAAGAATAAAGATTGTTATGAGAATCGATGC
* ** *** * * *
2233398 TTG-CCTATTTAAGG-GATGAACTTTGATATTAAGTAAAATAG-GGTACAA-AAAAGATTTCCAT
1 TTGTCTTATTT-AGGAGACAAACTTTGAT-TTATCAAAAACAGTGG-A-AAGAAAAGATTTTCTT
* * * * * *
2233459 GCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATC
62 GCAACACAAAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTAGATGCCCAATC
2233521 ACAAATTGAA
Statistics
Matches: 791, Mismatches: 206, Indels: 157
0.69 0.18 0.14
Matches are distributed among these distances:
156 12 0.02
157 103 0.13
158 228 0.29
159 332 0.42
160 88 0.11
161 26 0.03
162 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (159 bp):
TTGTCTTATTTAGGAGACAAACTTTGATTTATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCAA
CACAAAAGCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTTTAGATGCCCAATCTTGAAA
AGAATAAAGATTGTTATGAGAATCGATGC
Found at i:2233396 original size:475 final size:476
Alignment explanation
Indices: 2231423--2238011 Score: 3781
Period size: 475 Copynumber: 13.8 Consensus size: 476
2231413 GGTTCATGGT
* * *
2231423 TGTCATCACATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGT
1 TGTCATC-TATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* *
2231488 TACGAGAATCGATGCTTGTCCTT-TTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAG
65 TACGAGAATCGATGCTTGT-CTTATTTAAGGGATGAACTTTGATATT-AAGAAAATAGGGCAAAG
* * * *
2231552 AAAAGATTTTCATGCAAAAGAAAATCATCCATATCATTAATCTTAATGAGGAGAATGTGTTTATA
128 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
2231617 GTGCGTAATCACAAAATGAATGAAGATCATTACTAGAATCTAGGTTTGTCTCATTTGAGGCACGA
193 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
2231682 ACTTAGACTTCACAAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACCAAAGCACCAATGTCGT
258 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCAT
*
2231747 GTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGACT
323 GTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
* *
2231812 ATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAATC-GT-GAAAGGAAAAGCT
388 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAA-GAAAAGCT
* *
2231875 TTTCTTGTGACACCAAAGCAA-CAA
452 TTTCTTGCGACACAAAAGCAATCAA
* * * *
2231899 TGTCATGC-ACCCTAATAAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTAT
1 TGTCAT-CTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
*
2231963 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAACGA
65 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAG-AAAATAGGGCAAAGA
* * *
2232028 AAAGATTTCCATTCAATAGAAAATCATCAATATCATTTATCCTAACGAGGAG-A-------AT-G
129 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * * *
2232084 TGCCTAATCACAAATTGAATGAAGATCAATACTTGAATCCACGTTTGGCTCATTTGAGACACGAA
194 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * * * *
2232149 CTTAGACATTACAAAAATTGGTAGGAAGAAAGCCTTT-TTGGCAAAACCAAAGCATCAATAT-AG
259 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCGAATCCAAAGCACCAATATCA-
* ** ** * * *
2232212 TGTATCCTTATGAGAAGACTACATTTATA-GTGCCTAATCCCGAAAAGATTGGGGATTAGTATAA
322 TGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGA
** * *
2232276 CCATTCTTGTTTGTCTTATTTAAAAAGACAAACTTTGATTCTATT-AAAAACGGTGGAAAGAAAA
386 GTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCT-TTCAAAAACGGTGGAAAGAAAA
*
2232340 GCTTTTCTTGTGACAGCAAAA-CAA-CAA
449 GCTTTTCTTGCGACA-CAAAAGCAATCAA
* * * * *
2232367 TGTCTTGC-ATCCTAATGAAGGGAAGGTGTTTTTGGTTCCAAATCTTAGAAAAGAATGGAGATTG
1 TGTCAT-CTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTT-GAAAAGAATGGAGATTG
* * * *
2232431 TTATGAGAATCGATGTTTGTATTATTTAAGGGATGAACTTTGATATTAAGAACAATGGGGCAAAG
64 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGAA-AATAGGGCAAAG
* * * * *
2232496 AAAAGATTTTCATGTAAAAGAAAATCAAT-AATATCATTTATCGTAACGAGAAGAATGTGTTTAT
128 AAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* *
2232560 AGTGCCTAATCA-AACAATGGATGAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCAC
192 AGTGCCTAATCACAA-AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
*
2232624 AAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATC
256 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATC
* * * * * *
2232689 GTGTATACTAATGAGAAGACTATGTTTACA-CTACCTAATCTTGAAAAGAATGGGGAATAGTTTT
321 ATGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATG
* * *
2232753 AGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAG
385 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAG
* *
2232818 ATTTTCTTGCAACACAAAAGC-ATCAA
450 CTTTTCTTGCGACACAAAAGCAATCAA
* * **
2232844 TGTCATGTATCCTAATGAAGAGAATGCGTTTTTGGATCCCAATCTTGAAAAGAATAAAGATTGTT
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * *
2232909 ATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATGTTAAGTAAAATAAGGCAAAGAA
66 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAG-AAAATAGGGCAAAGAA
* *
2232974 AAGATTTCCATGTAAAACG-AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
130 AAGATTTCCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * **
2233038 TGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCTTGAA
194 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* ** *
2233103 CTTAGACTTTCCAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AATCTGAAGCACCAATATCATT
259 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCATG
* * *
2233167 TATTCTAATGAGAAGACTATGTTTAAGATGCCTAATCTTGAAAAGAATAGGGAATAGTATGAGTA
324 TATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTA
* * * *
2233232 TTCAAGTTTGACTTATTTAAGAGGCAAACTTTGATTCTTTCAAAAACGGTGAAAAGAAAAGCTTT
389 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTT
* *
2233297 TCTTGCGACCCCAAAGCAAT-AA
454 TCTTGCGACACAAAAGCAATCAA
* *
2233319 TGTCATCTATCCTAATGAATAGAATGTGTTTTTGCATCCCAATCTTGAAAAGAATGGAGATTGTT
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* *
2233384 ACGAGAATCGATGCTTG-CCTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGTACAA-A
66 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAG-AAAATAGGGCA-AAGA
*
2233447 AAAGATTTCCATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
129 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * *
2233512 TGCCTAATCACAAATTGAATGAAGATCAATGCTAGAATCCACGTTTAG-CTCATTTAAGGCACGA
194 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT-GTCTCATTTGAGGCACGA
* * * * * * * *
2233576 ACTTAGACATTACAAAAATTGGTTGGAAGAAAGGCTTT-TTGTCTAAACCAAAGCAACAATGTCA
258 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-CGAATCCAAAGCACCAATATCA
* * * ** * * * *
2233640 TGAATCCTAAT--GAAGGCAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGGG-ATTGTTAC
322 TGTATCCTAATGAGAAGACTATG--TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG-TAT
* * * * ** * ***
2233702 GAG-AATCGATGCTTATCTTTTTTAA-AGGATGAA-TGTTGA-T-TTTAAAGAAAATATGGCTAA
384 GAGTATTC-ATGTTTGTCTTATTTAAGA-GACAAACT-TTGATTCTTTCAA-AAACGGTGG--AA
** * * * * * *
2233762 A-AAAATATTTCCATGC-AAAGGAAAATC-ATCCA
443 AGAAAAGCTTTTCTTGCGACA-CAAAAGCAATCAA
* * * * ** ** *
2233794 TATCAT-TAATCTTAAT-AAGGAGAATGTGTTTATAG-TGCCCAATC-ACAAATTCAATGAAGAT
1 TGTCATCT-ATCCTAATGAA-GAGAATGTGTTTTTGGAT-CCCAATCTTGAAA-AGAATGGAGAT
*** * * * * * * ** * * * * *
2233855 CAATACTAGAATCCACGTTTGGCTCATTTGTGGCATGAACTTAGACAATACA-AAAATTGGTAG-
62 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTA-AGAAAATAGG--GC
* * * * * * * * * * * *
2233918 GAAG-ATAGCCTTT-CTTGCAAAAGCAAAGCATCAATATCGTGTATCCTTATG-CGAAAACTATG
124 AAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA-TGTG
** * * ** ** * * * * *
2233980 TTTACGGGGTCTAATCTTGAAAAT-AATGGGGAAT-AGTA-TGAGTATTCATGTTTGTTTTATTT
187 TTTATAGTGCCTAATC-ACAAAATGAATGAAG-ATCATTACT-AGAATCCATGTTTGTCTCATTT
* ** * * ** * * * *
2234042 AAGAG-ATAAACTTTGATTCTTT-GAAAAA-CAGTGGAAAGAAAAGCTTTATTTTTGCAACAT-C
249 GAG-GCACGAACTTAGA--CTTTACAAAAATTGGTGGGAA-AAAAGC-CT-TTCTTGCGA-ATCC
* * ** * * ** *
2234103 AAAGCAACAATGTCATCAATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGA
307 AAAGCACCAATATCATGTATCCTAATGAGA-AGACTATGTTTAAGG-TGCCTAATCTTGAAAAGA
* * * * * *
2234166 ATGGAG-ATTGTAATGAG-AATCGATGGTTGTCTTATTTAAGGGA-AGAACTTTGATAT-TAAGT
370 ATGGGGAATAGT-ATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA-AACTTTGAT-TCT--TT
* * * * * * * * *
2234227 -AAAATA-GG-GCAAAGAAAAGATTTCCATGCAATAGAAAATC-ATCGA
429 CAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCAATCAA
* * * * * * * ** * * **
2234272 TATCATTTATCCTAATGAGGAGAATGTGCTTATAG-TGCCTAATC-ACAAATTGAATGAAGATCA
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAA-AGAATGGAGATTG
* * * * * * * * * * * * *
2234335 ATACTAGAATCCATGTTTGGCTCATTTGAGGTACGAACTTAGACATTACA-AAAATTGGTAG-GA
64 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTA-AGAAAATAGG--GCAA
* * * ** * * * ** * ***
2234398 AG-AAAGCCTTT-CTTGAAAAACCAAAGCGTTAATATCATGCATCCGT-ATGA-GAAAACTACAT
126 AGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC-TAATGAGGAGAA-TGTGT
* * * ** * ** * * *
2234459 TT-TTGATGCGTAGTCTGGAAAA-GACTGGGGATTAGTATAACT-G--TTCATATTTGTCTCATT
188 TTATAG-TGCCTAATC-ACAAAATGAATGAAGATCA-T-T-ACTAGAATCCATGTTTGTCTCATT
** * * ** * * *
2234519 T-AAACAGACAAACTTTGATTCTTT-CAAAAA-CAGTGGAAAGAAAATCTTTTCTTGCGACA-CC
248 TGAGGC--ACGAACTTAGA--CTTTACAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGA-ATCC
* ** * * * ** * *
2234580 AAAGCTA-CAATGTCATGCGTCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
307 AAAGC-ACCAATATCATGTATCCTAATGAGA-AGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
* * * * * * ** * * **
2234643 ATGGAG-ATTGTTATGAG-AATCGAAGCTTGTCTTTTTTAAGAGATGAATTTTGAAT-TTAAAGA
370 ATGGGGAATAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCA-A
* * * * * * * * * *
2234705 AAATAGG-GCAAAGAAAAGATTTCCATG-TAAAAAAAATC-ATTAA
432 AAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCAATCAA
* * * * * * * * * * * *
2234748 TATCATTTATCCTAATGAGGAGAACGTCTTTGTAG-TGCCAAATC--AAAAAGGGATTGAAGATC
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAA--GAATGGAGATT
* * * ** * * * * * *
2234810 ATTACTAGAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACT-CTACA-AAAAGT-GGTGG
63 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TATTA-AGAAAA-TAGG-GC
* * * * *** * * * * * * *
2234872 GAA-AAAAGCCTTT-CTTGCGAATCCAGAGCACCAATATCATATATCCTAATGAGAAGACTATGT
124 AAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
** * ** * * * * * **
2234935 TTA-AGCTGCCTAATCTTGAAAA-GACTGGGGAAT-AGTA-TGAGTATTCAAGTTTGGCTTTTTT
188 TTATAG-TGCCTAATC-ACAAAATGAATGAAG-ATCATTACT-AGAATCCATGTTTGTCTCATTT
* * * * * * *
2234996 AAGAG-ACAAACTTTGATTCTTT-CAAAAA-CGAT-GAAAAGAGAAGCTTTTCTTGCGACA-CCA
249 GAG-GCACGAACTTAGA--CTTTACAAAAATTGGTGGGAAA-A-AAGCCTTTCTTGCGA-ATCCA
* * * * * * ** * *
2235056 AAGCATCAATGTCTTGTATCCTAACGA-AGAGAATGTGTTTTTGGAT-CCCAATCTGGAAAAGAA
308 AAGCACCAATATCATGTATCCTAATGAGA-AGACTATGTTTAAGG-TGCCTAATCTTGAAAAGAA
*** * * * * * * * * ** *
2235119 TTAAGATTATTAAGGGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT-TAAGT-AAA
371 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCT--TTCAAA
* * *
2235182 ATA-GG-GCAAAGAAAAG-ATTTC---C-ACACAAAAGAAACTCATCGA
433 A-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCAA-TCA---A
* * * * ** ** ** *
2235224 TGTCAT-TAATCTTAATGAGGAGAATGTGTTTAT-AATGCTGAATC-AAAAAATGAATAAAGATC
1 TGTCATCT-ATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGGAGATT
** * * * * * * * *
2235286 AATACTAGAATCCACG-TCTGGCTCT-TTTAAGGTACGAACTTAAGACT-TTACA-AAAATTGGT
63 GTTACGAGAATCGATGCT-TGTCT-TATTTAAGGGATGAACTT-TGA-TATTA-AGAAAATAGG-
** * * * ** * * * *** * ** * **
2235347 GGGAAG-AAAGCTTTTCTTGCGAAACCAAAGT-AGCAATGTCGCATATCCTTATGAAAAGACTAC
122 GCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * * *** * * *
2235410 ATTTATGGTGCCTAATCCCGAAAA-GAATGAGGA-GA--A-T-G--TGTTTGTAGTGCCT-AATT
186 GTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGT-TTGTCTCATTT
* *** * * * * * *** *** * *** *
2235466 AAAAAATGAA-TGAAGATCTTTAGTAGAATCCACGTTTGTCTTATTTGAGGCACGAACTT-AG-A
249 GAGGCACGAACT-TAGA-CTTTA-CA-AA---A-ATTGGTGGGA-AAAAAGC-CTTTCTTGCGAA
** * * *** * * * * * *
2235528 -CCTTA-CA--AAAAT--TG-GTGGGAA-GA-AAGCCTTTCTTGCGAATCCAAAGCGCCATTATC
304 TCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTT-----T--AAGGTGCC-TAATC
* **** * * * * * *** *
2235584 ATGTATCCTAAT-GAGAAGACTAT--GT-TTACAGTGCCTAGTCTTGAAAAGAATGGGGAACAGT
361 TTG-AAAAGAATGGGGAATAGTATGAGTATT-CA-TG-TTTGTCTT--ATTTAA--GAG-ACA--
* * ** ** ** * *
2235645 ATCAGTATTCATGT-TTGTC--TTA---TTTAAGAGACAAA-CTTTGATT-CTATCAAAAACAGT
415 A--ACT-TTGAT-TCTT-TCAAAAACGGTGGAA-AGA-AAAGCTTTTCTTGCGA-CACAAA-A--
* **
2235702 GGAAAGAAA
469 -GCAATCAA
* ** * * * *
2235711 AGCTTTTCTTGCAACACAAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGCCTTTTTGGAT
1 TG-TCATC-T--ATC-CTAATG----AA-G--A-G------AAT---GTG------TTTTTGGAT
* *
2235776 CCCAATCTTGAAAAGAATAGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAGGGATGAACT
38 CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * *
2235841 TTGATATTAAGTAAAATGGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATTAATATCTTTT
103 TTGATATTAAG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
* * * *
2235906 ATCCTAATGAGGAGAATGCGTTTATAGTGCCGAATCAAAAAATGAATGAAAATCATTACTAGAAT
167 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
2235971 CCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGT-GG-----AG-----G
232 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * *
2236025 TTGCGAATCTAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTACA-GTGCATAGTC
297 TTGCGAATCCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATC
* * * *
2236089 TTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGCCATATTTAAGAGACAAATTTTGATTC
361 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
2236154 TATCAAAAAC-GTTGAAAGAAATGCTTTTCTTGCGGCACAAAAGC-ATCAA
426 TTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCAATCAA
* * ** *
2236203 TGTCATGTATCCTAGTGAAGAGAATGCCTTTTTGGATCCTAATCTTGAAAAGAATGGAGATTGTT
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * * *
2236268 ACGAGAATCAATACTTGTCTTATTTTAGGGATGAACTTTTATATTAAGTAAAATAGGGCGAAGAA
66 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAG-AAAATAGGGCAAAGAA
* * * *
2236333 AAGATTTCCATGCAATAGAAAATCATCAATATCATTTATTCTAAAGAGGGGAATGTGTTTATAGT
130 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
2236398 GCCTAATCACAAATTAAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAAC
195 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* ** * * * **
2236463 TTAGACATTACAAAAATTGGTAAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATTAATATCATGT
260 TTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCATGT
* * ** * *** * * *
2236528 ATCCTTATGAGAAGACAACATTTATGGTGCCTAATCCCCCAAAA-AATGGGGATTAGTATAACTA
325 ATCCTAATGAGAAGACTATGTTTAAGGTGCCTAAT-CTTGAAAAGAATGGGGAATAGTATGAGTA
* * *
2236592 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GAAAAAAAAGCTTT
389 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTT
* * *
2236656 TTTTGCGTCACCAAAGC-ATCAA
454 TCTTGCGACACAAAAGCAATCAA
* *
2236678 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGGGATTGTT
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * *
2236743 ATGGGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAA
66 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAG-AAAATAGGGCAAAGAA
* ** *
2236808 AAGATTTCCATGCAAAAGGAAAGAATCAATATCATTAAT-CTCAATGAGGAGAATGTGTTTATAG
130 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAG
* * * * * *
2236872 TGCCCAATCACAAAATGAATGAAGATCAGTACCA-AACCCCAAGTTTGGCTCATTTGAGGCACGA
194 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCATGTTTGTCTCATTTGAGGCACGA
* * * * ** *
2236936 ACTTAGATTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATAAATATCGT
258 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCAT
* * ** * ** * *
2237001 GTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGATTATTATGAGT
323 GTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
*
2237066 ATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATT-AAAAACGGTGGAAAGAAAAGCT
388 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-TTCAAAAACGGTGGAAAGAAAAGCT
2237130 TTTCTTGCGACAGC-AAAGCAA-CAA
452 TTTCTTGCGACA-CAAAAGCAATCAA
* * * *
2237154 TGTCATGC-ATCCTAATGAAGGGAAGGTGTTTTTGGTTCCAAATCTTAGAAAAGAATGGAGATTG
1 TGTCAT-CTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTT-GAAAAGAATGGAGATTG
* * ** * **
2237218 TTACGAGAATTGATGCTTGTCTTTTTTAAAAGATGAACTTTGATTTTCAAGAAAATACAGCAAAG
64 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGAAAATAGGGCAAAG
* * * * *
2237283 AAAATATTTCCATGCAAAAGAAAATCATCCATATCATTAATCTTAATGAGGAGAATTTGTTTATA
128 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
2237348 GTGACTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGGTTGTCTCATTTGAGGCACGA
193 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
2237413 ACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCCTTCTTGTGAATCCAAAGCGCCAATATCAT
258 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCAT
2237478 GTATCCTAATGAGAAGACTATGTTTAAGGTG---AATCTTGAAAAGAATGGGGAATAGTATGAGT
323 GTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
* * * *
2237540 ATTCAAGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT
388 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTT
* *
2237605 TTCTT-CTGATACGAAAGC-ATCAA
453 TTCTTGC-GACACAAAAGCAATCAA
** * * * * *
2237628 TGTCAAGTATCATAATAAAGAGAATGTGCTTTTAGATCCCAATCTTGAAAATAATGGAGATTGTT
1 TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * * * *
2237693 ACGAGAATCCATGCTTGTTTTATTTAAAGGATGAACTTCGATATTAGGTAAAATAAGGCAAAGAA
66 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAG-AAAATAGGGCAAAGAA
* * *
2237758 ATGATTGCCATGCAAAAGAAAATCATCAATATCAGTTATCCTAATGAGGAGAATGTGTTTATAGT
130 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* *
2237823 GCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
195 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* *
2237888 TTAGACTCTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCATGT
260 TTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCATGT
** *
2237953 ATCCTAATGAGAAGACTATGTTTAAGGCACCTAATCTTGAAAAGAATAGGG-ATAGTATG
325 ATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATG
2238012 TGATGACAAC
Statistics
Matches: 4908, Mismatches: 891, Indels: 629
0.76 0.14 0.10
Matches are distributed among these distances:
464 227 0.05
465 3 0.00
466 180 0.04
467 33 0.01
468 75 0.02
469 134 0.03
470 20 0.00
471 11 0.00
472 13 0.00
473 304 0.06
474 392 0.08
475 1322 0.27
476 666 0.14
477 603 0.12
478 508 0.10
479 55 0.01
480 12 0.00
481 6 0.00
482 8 0.00
483 7 0.00
484 3 0.00
485 7 0.00
486 1 0.00
487 10 0.00
488 5 0.00
490 3 0.00
491 8 0.00
492 7 0.00
493 1 0.00
494 3 0.00
495 5 0.00
496 7 0.00
497 15 0.00
498 6 0.00
499 1 0.00
500 4 0.00
501 2 0.00
502 2 0.00
503 4 0.00
504 5 0.00
505 19 0.00
506 10 0.00
507 5 0.00
508 8 0.00
509 2 0.00
510 2 0.00
511 3 0.00
512 2 0.00
513 10 0.00
514 21 0.00
515 109 0.02
516 9 0.00
518 1 0.00
519 3 0.00
520 2 0.00
521 9 0.00
522 14 0.00
523 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (476 bp):
TGTCATCTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGAAAATAGGGCAAAGAAA
AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCACCAATATCATGTA
TCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTC
TTGCGACACAAAAGCAATCAA
Found at i:2233799 original size:317 final size:316
Alignment explanation
Indices: 2233307--2233922 Score: 891
Period size: 317 Copynumber: 1.9 Consensus size: 316
2233297 TCTTGCGACC
* * *
2233307 CCAAAGCAATAATGTCATCTATCCTAATGAATAGAATGTGTTTTTGCATCCCAATCTTGAAAAGA
1 CCAAAGCAACAATGTCATCAATCCTAATGAATAGAATGTATTTTTGCATCCCAATCTTGAAAAGA
*
2233372 ATGGAGATTGTTACGAGAATCGATGCTTGCCTATTTAAGGGATGAACTTTGATATTAAGTAAAAT
66 ATGGAGATTGTTACGAGAATCGATGCTTGCCTATTTAAAGGATGAACTTTGATATTAAGTAAAAT
* * *
2233437 AGGGTACAAAAAAGATTTCCATGCAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
131 AGGCTACAAAAAAGATTTCCATGCAATAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
* * *
2233502 GTGTTTATAGTGCCTAATCACAAATTGAATGAAGATCAATGCTAGAATCCACGTTTAGCTCATTT
196 GTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACTAGAATCCACGTTTAGCTCATTT
* *
2233567 AAGGCACGAACTTAGACATTACAAAAATTGGTTGGAAGAAAGGCTTTTTGTCTAAA
261 AAGGCACGAACTTAGACAATACAAAAATTGGTAGGAAGAAAGGCTTTTTGTCTAAA
* * **
2233623 CCAAAGCAACAATGTCATGAATCCTAATGAA-GGCAATGTATTTTTGGTTCCCAATCTTGAAAAG
1 CCAAAGCAACAATGTCATCAATCCTAATGAATAG-AATGTATTTTTGCATCCCAATCTTGAAAAG
* * * * *
2233687 AATGGGGATTGTTACGAGAATCGATGCTTATCTTTTTTAAAGGATGAA-TGTTGATTTTAAAG-A
65 AATGGAGATTGTTACGAGAATCGATGCTT-GCCTATTTAAAGGATGAACT-TTGATATT-AAGTA
* * *
2233750 AAATATGGCTA-AAAAAATATTTCCATGCAA-AGGAAAATCATCCATATCATTAATCTTAATAAG
127 AAATA-GGCTACAAAAAAGATTTCCATGCAATA-GAAAATCATCAATATCATTAATCCTAATAAG
*
2233813 GAGAATGTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACTAGAATCCACGTTTGGC
190 GAGAATGTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACTAGAATCCACGTTTAGC
** *
2233878 TCATTTGTGGCATGAACTTAGACAATACAAAAATTGGTAGGAAGA
255 TCATTTAAGGCACGAACTTAGACAATACAAAAATTGGTAGGAAGA
2233923 TAGCCTTTCT
Statistics
Matches: 266, Mismatches: 28, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
315 1 0.00
316 85 0.32
317 173 0.65
318 7 0.03
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (316 bp):
CCAAAGCAACAATGTCATCAATCCTAATGAATAGAATGTATTTTTGCATCCCAATCTTGAAAAGA
ATGGAGATTGTTACGAGAATCGATGCTTGCCTATTTAAAGGATGAACTTTGATATTAAGTAAAAT
AGGCTACAAAAAAGATTTCCATGCAATAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
GTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACTAGAATCCACGTTTAGCTCATTT
AAGGCACGAACTTAGACAATACAAAAATTGGTAGGAAGAAAGGCTTTTTGTCTAAA
Found at i:2233998 original size:317 final size:316
Alignment explanation
Indices: 2233355--2234011 Score: 842
Period size: 317 Copynumber: 2.1 Consensus size: 316
2233345 TGTTTTTGCA
* *
2233355 TCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGCCTATTTAAGGGATGAACT
1 TCCCAATCTTGAAAAGAATGGGGATTGTTACGAGAATCGATGCTTGCCTATTTAAAGGATGAACT
* *
2233420 TTGATATTAAGTAAAATAGGGTACAAAAAAGATTTCCATGCAATAGAAAATCATCAATATCATTT
66 TTGATATTAAGTAAAATAGGCTACAAAAAAGATTTCCATGCAATAGAAAATCATCAATATCATTA
* * * *
2233485 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAATTGAATGAAGATCAATGCTAGAAT
131 ATCCTAATAAGGAGAATGTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACTAGAAT
* * *
2233550 CCACGTTTAGCTCATTTAAGGCACGAACTTAGACATTACAAAAATTGGTTGGAAGAAAGGCTTTT
196 CCACGTTTAGCTCATTTAAGGCACGAACTTAGACAATACAAAAATTGGTAGGAAGAAAGCCTTTT
* * ** *** *
2233615 TGTCTAAACCAAAGCAACAATGTCATGAATCCTAATGAAGGCAATGTATTTTTGGT
261 TGTCAAAACCAAAGCAACAATATCATGAATCCTAATGAAAACAATGTATTACGGGG
* * *
2233671 TCCCAATCTTGAAAAGAATGGGGATTGTTACGAGAATCGATGCTTATCTTTTTTAAAGGATGAA-
1 TCCCAATCTTGAAAAGAATGGGGATTGTTACGAGAATCGATGCTT-GCCTATTTAAAGGATGAAC
* * *
2233735 TGTTGATTTTAAAG-AAAATATGGCTA-AAAAAATATTTCCATGCAA-AGGAAAATCATCCATAT
65 T-TTGATATT-AAGTAAAATA-GGCTACAAAAAAGATTTCCATGCAATA-GAAAATCATCAATAT
*
2233797 CATTAATCTTAATAAGGAGAATGTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACT
126 CATTAATCCTAATAAGGAGAATGTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACT
* ** * *
2233862 AGAATCCACGTTTGGCTCATTTGTGGCATGAACTTAGACAATACAAAAATTGGTAGGAAGATAGC
191 AGAATCCACGTTTAGCTCATTTAAGGCACGAACTTAGACAATACAAAAATTGGTAGGAAGAAAGC
* * * * * *
2233927 CTTTCTTG-CAAAAGCAAAGCATCAATATCGTGTATCCTTATGCGAAAACTATGT-TTACGGGG
256 CTTT-TTGTCAAAACCAAAGCAACAATATCATGAATCCTAAT--GAAAACAATGTATTACGGGG
* *
2233989 T-CTAATCTTGAAAATAATGGGGA
1 TCCCAATCTTGAAAAGAATGGGGA
2234012 ATAGTATGAG
Statistics
Matches: 294, Mismatches: 39, Indels: 15
0.84 0.11 0.04
Matches are distributed among these distances:
316 46 0.16
317 225 0.77
318 15 0.05
319 8 0.03
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (316 bp):
TCCCAATCTTGAAAAGAATGGGGATTGTTACGAGAATCGATGCTTGCCTATTTAAAGGATGAACT
TTGATATTAAGTAAAATAGGCTACAAAAAAGATTTCCATGCAATAGAAAATCATCAATATCATTA
ATCCTAATAAGGAGAATGTGTTTATAGTGCCCAATCACAAATTCAATGAAGATCAATACTAGAAT
CCACGTTTAGCTCATTTAAGGCACGAACTTAGACAATACAAAAATTGGTAGGAAGAAAGCCTTTT
TGTCAAAACCAAAGCAACAATATCATGAATCCTAATGAAAACAATGTATTACGGGG
Found at i:2235620 original size:197 final size:198
Alignment explanation
Indices: 2235237--2235635 Score: 484
Period size: 197 Copynumber: 2.0 Consensus size: 198
2235227 CATTAATCTT
2235237 AATGAGGAGAATGTGTTTATAATGCTGAATCAAAAAATGAATAAAGATCAATACTAGAATCCACG
1 AATGAGGAGAATGTGTTTATAATGCTGAATCAAAAAATGAATAAAGATCAATACTAGAATCCACG
* * *
2235302 TCTGGCTCTTTTAAGGTACGAACTTAAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGC
66 TCTGGCTCTTTTAAGGCACGAACTTAAGACCTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * **
2235367 GAAACCAAAGTAGCAATGTCGCATATCCTTATGAAAAGACTACATTTATGGTGCCTAATCCCGAA
131 GAAACCAAAGTAGCAATGTAGCATATCCTAATGAAAAGACTACATTTACAGTGCCTAATCCCGAA
2235432 AAG
196 AAG
* * * * ** *
2235435 AATGAGGAGAATGTGTTTGTAGTGCCT-AATTAAAAAATGAATGAAGATCTTTAGTAGAATCCAC
1 AATGAGGAGAATGTGTTTATAATG-CTGAATCAAAAAATGAATAAAGATCAATACTAGAATCCAC
* * *
2235499 GTTTGTCT-TATTTGAGGCACGAACTT-AGACCTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
65 GTCTGGCTCT-TTTAAGGCACGAACTTAAGACCTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * * ** * *
2235562 GCGAATCCAAAG-CGCCAT-TATCATGTATCCTAATGAGAAGACTATGTTTACAGTGCCTAGTCT
129 GCGAAACCAAAGTAGCAATGTAGCA--TATCCTAATGAAAAGACTACATTTACAGTGCCTAATCC
*
2235625 TGAAAAG
192 CGAAAAG
2235632 AATG
1 AATG
2235636 GGGAACAGTA
Statistics
Matches: 170, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
195 3 0.02
196 4 0.02
197 87 0.51
198 74 0.44
199 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (198 bp):
AATGAGGAGAATGTGTTTATAATGCTGAATCAAAAAATGAATAAAGATCAATACTAGAATCCACG
TCTGGCTCTTTTAAGGCACGAACTTAAGACCTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
GAAACCAAAGTAGCAATGTAGCATATCCTAATGAAAAGACTACATTTACAGTGCCTAATCCCGAA
AAG
Found at i:2235822 original size:159 final size:157
Alignment explanation
Indices: 2235659--2237719 Score: 447
Period size: 159 Copynumber: 13.1 Consensus size: 157
2235649 GTATTCATGT
2235659 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
1 TTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
* * *
2235724 ACACAAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGCCTTTTTGGATCCCAATCTTGAAA
65 ACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGATCCCAATCTTGAAA
*
2235789 AGAATAGAGATTGTTACGAGAATCGATAC
130 AGAATGGAGATTGTTACGAGAATC-ATAC
* ** *** * * * * * *
2235818 TTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAA-TGGGGCAAAGAAAAGATTTCCATGG
1 TTGTCTTATTTAAGAGACAAACTTTGAT-TTATCAAAAACAGTGG-AAAGAAAAGCTTTTCTTGC
* * * * * * * * * * **
2235882 AAAAGAAAATCATTAATATCTTTTATCCTAATGAGGAGAATGCGTTTATAG-TGCCGAATC-AAA
64 AACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGAT-CCCAATCTTGA
* * ** * **
2235945 AAATGAATGAAAATCATTACTAGAATCCATGT
128 AAA-GAATGGAGATTGTTACGAGAAT-CATAC
* * * * *
2235977 TTGTCTCATTTGAG-GCACAAACTTAGACTTTA-CAAAAATTAGTGG--AG----G--TTGC--G
1 TTGTCTTATTTAAGAG-ACAAACTTTGA-TTTATCAAAAA-CAGTGGAAAGAAAAGCTTTTCTTG
* * * * * *
2236030 -AA-TCTAAAGCACCAATATCATGTATCCTAAT---GAGAA-GACTATGTTTACAGT-GCATAGT
63 CAACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCT-T-TTTAGA-TCCCA-A-T
* * * * *
2236088 CTTGAAAAGAATGGGGAATAG-TATGAGTATTCATAT
123 CTTGAAAAGAATGGAG-ATTGTTACGAG-AATCATAC
* * * * * *
2236124 TTGCCATATTTAAGAGACAAATTTTGATTCTATCAAAAAC-GTTGAAAGAAATGCTTTTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
* * * * *
2236188 GCACAAAAGCATCAATGTCATGTATCCTAGTGAAGAGAATGCCTTTTTGGATCCTAATCTTGAAA
65 ACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGATCCCAATCTTGAAA
2236253 AGAATGGAGATTGTTACGAGAATCAATAC
130 AGAATGGAGATTGTTACGAGAATC-ATAC
* * ** * *** * * * * *
2236282 TTGTCTTATTTTAGGGATGAACTTTTATATTAAGTAAAATAG-GGCGAAGAAAAGATTTCCATGC
1 TTGTCTTATTTAAGAGACAAACTTTGAT-TTATCAAAAACAGTGG-AAAGAAAAGCTTTTCTTGC
* * * * * * * * ** * * **
2236346 AATAGAAAATCATCAATATCATTTATTCTAAAGAGGGGAATGTGTTTATAG-TGCCTAATC-ACA
64 AACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGAT-CCCAATCTTGA
* *** * *
2236409 AATTA-AATGAAGATCAATACTAGAATC-CAC
128 AA--AGAATGGAGATTGTTACGAGAATCATAC
* * * * * * * * *
2236439 GTTTGGCTCATTTGAG-GCACGAACTTAGACATTA-C-AAAA-ATTGGTAAGAAGAAAGCCTTTC
1 --TTGTCTTATTTAAGAG-ACAAACTTTGA-TTTATCAAAAACAGTGGAAAG-A-AAAGCTTTTC
* * * * * * * * *
2236500 TTGCAAAACCAAAGCATTAATATCATGTATCCTTATG-AGAAGACA-ACATTTAT-GGTGCCTAA
60 TTGCAACACAAAAGCATCAATATCATGTATCCTAATGAAG-AGA-ATGCCTTTTTAGAT-CCCAA
*** * * * **
2236562 TCCCCCAAAA-AATGGGGATTAGTATA--ACTATTCATGT
122 T-CTTGAAAAGAATGGAGATT-GT-TACGA-GAATCATAC
** * * *
2236599 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GAAAAAAAAGCTTTTTTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
* * * ** *
2236663 TCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAA
65 ACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGATCCCAATCTTGAAA
* * * *
2236728 AGAATGGGGATTGTTATGGGAATCAATGC
130 AGAATGGAGATTGTTACGAGAATC-ATAC
* ** *** * * * *
2236757 TTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAG-GGCAAAGAAAAGATTTCCATGC
1 TTGTCTTATTTAAGAGACAAACTTTGAT-TTATCAAAAACAGTGG-AAAGAAAAGCTTTTCTTGC
* ** * * ** * *
2236821 AAAAGGAAAGAATCAATATCAT-TAAT-CTCAATGAGGAGAATGTGTTTATAG-TGCCCAATC-A
64 AACACAAAAGCATCAATATCATGT-ATCCT-AATGAAGAGAATGCCTTTTTAGAT-CCCAATCTT
* * * * * *
2236882 CAAAATGAATGAAGATCAG-TACCA-AACCCCA-AGT
126 GAAAA-GAATGGAGAT-TGTTACGAGAA--TCATA-C
* * * * * ** *
2236916 TTGGCTCATTTGAG-GCACGAACTTAGATTT-TACAAAAATTGGTAGG-AAG-AAAGCCTTTCTT
1 TTGTCTTATTTAAGAG-ACAAACTTTGATTTAT-CAAAAA-CAGT-GGAAAGAAAAGCTTTTCTT
* * * * * * * * * *
2236977 GCGAA-ACCAAAGCATAAATATCGTGTATCCTTATG-AGAAAACTACATTTAT-GGTGCCTAATC
62 GC-AACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAA-TGCCTTTTTAGAT-CCCAATC
** * * * * **
2237039 CCGAAAAGAATGGGGATTATTATGAGTATTCATGT
124 TTGAAAAGAATGGAGATTGTTACGAG-AATCATAC
* * * *
2237074 TTGTCTTAATTAAGAGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
* * * * * ** * * *
2237139 ACAGC-AAAGCAACAATGTCATGCATCCTAATGAAGGGAAGGTGTTTTTGGTTCCAAATCTTAGA
65 ACA-CAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGATCCCAATCTT-GA
* *
2237203 AAAGAATGGAGATTGTTACGAGAATTGATGC
128 AAAGAATGGAGATTGTTACGAGAA-TCATAC
* * ** * ** * ** * *
2237234 TTGTCTTTTTTAAAAGATGAACTTTGATTT-TCAAGAAAATACAGCAAAGAAAATATTTCCATGC
1 TTGTCTTATTTAAGAGACAAACTTTGATTTATC-A-AAAACAGTGGAAAGAAAAGCTTTTCTTGC
* * * * * * *** * * * **
2237298 AAAAGAAAATCATCCATATCAT-TAATCTTAATGAGGAGAATTTGTTTATAG-TGACTAATC-AC
64 AACACAAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGCCTTTTTAGAT-CCCAATCTTG
* ** * **
2237360 AAAATGAATGAAGATCATTACTAGAATCCATGG
127 AAAA-GAATGGAGATTGTTACGAGAAT-CATAC
* * * * * * **
2237393 TTGTCTCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTAGTGGGAA-AAAAGCCCTTCTTG
1 TTGTCTTATTTAAGAG-ACAAACTTTGA-TTTATCAAAAA-CAGTGGAAAGAAAAGCTTTTCTTG
* ** * * *
2237455 TGAATC-C-AAAGCGCCAATATCATGTATCCTAATG-AGAAGACTATG---TTTAAGGT--GAAT
63 -CAA-CACAAAAGCATCAATATCATGTATCCTAATGAAG-AGA--ATGCCTTTTTAGATCCCAAT
* * * * *
2237512 CTTGAAAAGAATGGGGAATAG-TATGAGTATTCA-AGT
123 CTTGAAAAGAATGGAG-ATTGTTACGAG-AATCATA-C
* **
2237548 TTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTT-CT
1 TTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGC-
* * * * * * * *
2237612 GATACGAAAGCATCAATGTCAAGTATCATAATAAAGAGAATGTGC-TTTTAGATCCCAATCTTGA
64 AACACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATG-CCTTTTTAGATCCCAATCTTGA
* *
2237676 AAATAATGGAGATTGTTACGAGAATCCATGC
128 AAAGAATGGAGATTGTTACGAGAAT-CATAC
*
2237707 TTGTTTTATTTAA
1 TTGTCTTATTTAA
2237720 AGGATGAACT
Statistics
Matches: 1334, Mismatches: 419, Indels: 298
0.65 0.20 0.15
Matches are distributed among these distances:
143 2 0.00
144 6 0.00
145 4 0.00
146 6 0.00
147 58 0.04
148 19 0.01
149 1 0.00
151 3 0.00
152 1 0.00
153 1 0.00
154 8 0.01
155 47 0.04
156 57 0.04
157 51 0.04
158 421 0.32
159 487 0.37
160 150 0.11
161 9 0.01
162 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
TTGTCTTATTTAAGAGACAAACTTTGATTTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAA
CACAAAAGCATCAATATCATGTATCCTAATGAAGAGAATGCCTTTTTAGATCCCAATCTTGAAAA
GAATGGAGATTGTTACGAGAATCATAC
Found at i:2237975 original size:158 final size:160
Alignment explanation
Indices: 2236359--2237976 Score: 431
Period size: 158 Copynumber: 10.2 Consensus size: 160
2236349 AGAAAATCAT
* * * ** * * * *
2236359 CAATATCATTTATTCTAAAGAGGGGAATGTGTTTATAGTGCCTAATC-ACAAATTAAATGAAGAT
1 CAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCTAGAAAATGAATGAAGAT
* * * * * *
2236423 CAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTAGACAT-TA-CAAAAATTGGTAA
66 CATTACTAGAATCCATGTTTGTCTCATTTAAGG-ATGAACTTAGAC-TCTAGCAAAAATTGGTGA
* * *
2236486 GAAG-AAAGCCTTTCTTGCAAAACCAAAGCAT
129 GAAGAAAAGCCTTTCTTGCGAATCCAAAGCAC
* * ** * *** **
2236517 TAATATCATGTATCCTTATGAGAAGACA-ACATTTATGGTGCCTAATCCCCCAAAA--AATGGGG
1 CAATATCATGTATCCTAATGAGAAGA-ATATGTTTATAGTGCCTAAT-CTAGAAAATGAATGAAG
* * * * ** * * *
2236579 ATTAGTA-TA-ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGG
64 ATCATTACTAGA--ATCCATGTTTGTCTCATTTAAG-GATGAACTTAGACTCTAGCAAAAATTGG
* * * * *
2236641 TGA-AAAAAAAGCTTTTTTTGCGTCA-CCAAAGCAT
126 TGAGAAGAAAAGCCTTTCTTGCG-AATCCAAAGCAC
* * * * * * **
2236675 CAATGTCATGTATCCTAATGA-AGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGGGG
1 CAATATCATGTATCCTAATGAGA-AGAATATGTTTATAG-TGCCTAATCTAGAAAATGAATGAAG
** * * * * * * * *
2236737 ATTGTTA-TGGGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGA-TATTAAG-TAAAATAG
64 ATCATTACT-AGAATCCATGTTTGTCTCATTTAA-GGATGAACTTAGACT-CT-AGCAAAAATTG
* * * *** * *
2236799 G-GCA-AAGAAAAG-ATTTCCATGCAAAAGGAAAGAAT
125 GTG-AGAAGAAAAGCCTTT-CTTGCGAATCCAAAGCAC
* * * *
2236834 CAATATCAT-TAAT-CTCAATGAGGAGAATGTGTTTATAGTGCCCAATC-ACAAAATGAATGAAG
1 CAATATCATGT-ATCCT-AATGAGAAGAATATGTTTATAGTGCCTAATCTAGAAAATGAATGAAG
* * * * * * * * *
2236896 ATCAGTACCA-AACCCCAAGTTTGGCTCATTTGAGGCACGAACTTAGATTTTA-CAAAAATTGGT
64 ATCATTACTAGAA-TCCATGTTTGTCTCATTTAAGG-ATGAACTTAGACTCTAGCAAAAATTGGT
* *
2236959 -AGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCAT
127 GA-GAAGAAAAGCCTTTCTTGCGAATCCAAAGCAC
* * * ** * ** **
2236992 AAATATCGTGTATCCTTATGAGAA-AACTACATTTATGGTGCCTAATCCCGAAAA-GAATGGGGA
1 CAATATCATGTATCCTAATGAGAAGAA-TATGTTTATAGTGCCTAATCTAGAAAATGAATGAAGA
* * * * * ** * * ** *
2237055 TTATTA-TGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATTAAAAA-CGGTG
65 TCATTACT-AGAATCCATGTTTGTCTCATTTAAG-GATGAACTTAGACTCTAGCAAAAATTGGTG
* * *
2237118 -GAAAGAAAAGCTTTTCTTGCGACA-GCAAAGCAA
128 AG-AAGAAAAGCCTTTCTTGCGA-ATCCAAAGCAC
* * * ** * * * * *
2237151 CAATGTCATGCATCCTAATGA-AGGGAAGGTGTTTTTGGTTCCAAATCTTAGAAAA-GAATGGAG
1 CAATATCATGTATCCTAATGAGA-AGAATATGTTTATAGTGCCTAATC-TAGAAAATGAATGAAG
** * ** * ** * * ** * ***
2237214 ATTGTTACGAGAATTGATGCTTGTCTTTTTTAAAAGATGAACTTTGA-T-TTTCAAGAAAATACA
64 ATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGATGAACTTAGACTCTAGCAA-AAATTGGT
** * * *** *
2237277 GCA-AAGAAAA-TATTTCCATGCAAAAGAAAATCATC
127 G-AGAAGAAAAGCCTTT-CTTGCGAATCCAAAGCA-C
* * * * *
2237312 C-ATATCAT-TAATCTTAATGAGGAGAATTTGTTTATAGTGACTAATC-ACAAAATGAATGAAGA
1 CAATATCATGT-ATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCTAGAAAATGAATGAAGA
* * * * * *
2237374 TCATTACTAGAATCCATGGTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTAGTGG
65 TCATTACTAGAATCCATGTTTGTCTCATTTAAGG-ATGAACTTAGACTCTAGCAAAAATTGGTGA
* * *
2237438 GAA-AAAAGCCCTTCTTGTGAATCCAAAGCGC
129 GAAGAAAAGCCTTTCTTGCGAATCCAAAGCAC
* * **
2237469 CAATATCATGTATCCTAATGAGAAGACTATGTTTA-AG-G--TGAATCTTGAAAA-GAATGGGGA
1 CAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCT-AATCTAGAAAATGAATGAAG-
* * * * * * * *
2237529 AT-AGTA-TGAGTATTCAAGTTTGTCTTATTTAAGAGA-GAAACTTTGATTCTATCAAAAA-TGG
64 ATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-GATG-AACTTAGACTCTAGCAAAAATTGG
* * *
2237590 TG-GAAAGAAAAGCTTTTCTT-CTG-ATACGAAAGCAT
126 TGAG-AAGAAAAGCCTTTCTTGC-GAAT-CCAAAGCAC
* * * * * * * *
2237625 CAATGTCAAGTATCATAAT-AAAGAGAATGTGCTTT-TAGAT-CCCAATCTTGAAAAT-AATGGA
1 CAATATCATGTATCCTAATGAGA-AGAATATG-TTTATAG-TGCCTAATCTAGAAAATGAATGAA
** * * * * * * ** *
2237686 GATTGTTACGAGAATCCATGCTTGTTTTATTTAAAGGATGAACTTCGA-TATTAGGTAAAATAAG
63 GATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGATGAACTTAGACT-CTAGCAAAAAT-TG
* * * * * * *** * *
2237750 G-CA-AAGAAATG-ATTGCCATGCAAAAGAAAATCAT
125 GTGAGAAGAAAAGCCTT-TCTTGCGAATCCAAAGCAC
* * *
2237784 CAATATCA-GTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-AAAAAATGAATGAAGA
1 CAATATCATG-TATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCTAGAAAATGAATGAAGA
*
2237847 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTA-CAAAAATTGGTGA
65 TCATTACTAGAATCCATGTTTGTCTCATTTAAGG-ATGAACTTAGACTCTAGCAAAAATTGGTGA
2237911 GAA-AAAAGCCTTTCTTGCGAATCCAAAGCAC
129 GAAGAAAAGCCTTTCTTGCGAATCCAAAGCAC
*
2237942 CAATATCATGTATCCTAATGAGAAGACTATGTTTA
1 CAATATCATGTATCCTAATGAGAAGAATATGTTTA
2237977 AGGCACCTAA
Statistics
Matches: 1051, Mismatches: 297, Indels: 224
0.67 0.19 0.14
Matches are distributed among these distances:
154 4 0.00
155 53 0.05
156 55 0.05
157 28 0.03
158 413 0.39
159 376 0.36
160 116 0.11
161 6 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (160 bp):
CAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCTAGAAAATGAATGAAGAT
CATTACTAGAATCCATGTTTGTCTCATTTAAGGATGAACTTAGACTCTAGCAAAAATTGGTGAGA
AGAAAAGCCTTTCTTGCGAATCCAAAGCAC
Found at i:2239596 original size:474 final size:475
Alignment explanation
Indices: 2238707--2239720 Score: 1487
Period size: 474 Copynumber: 2.1 Consensus size: 475
2238697 GGTTTTCATC
* * * * * *
2238707 AGTATGAGTATTCAAGTTTGGCTTTTTTAAGATACAAACTTTGATTCTTTCAAAAATGTTGAAAA
1 AGTATGAGTATTCAAGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
*
2238772 GAAAAGCTTTCTTGCGACACCAAAGCAACAATGTCATGCATCCTAATGAAAAGAATGCATTTTTG
66 GAAAAGCTTTCTTCCGACACCAAAGCAACAATGTCATGCATCCTAATGAAAAGAATGCATTTTTG
* * * * * *
2238837 GTTCCCAATCCTGCAAAGAACAGAGATTGTTATGAGAATTGATGCTTGTCTTTTTTAAGGGATGA
131 GATCCCAATCCTGAAAAGAACAGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAGGGATGA
* * * *
2238902 ACTTTGATTTTAAGTAAAAAAGGGCAAAGAAAAGATTTTTCATGCAAAAGAAAATCATCAATGTC
196 ACTTTGATATTAAGTAAAAAAGGGCAAAGAAAAGATTTTCCACGCAAAAGAAAATCATCAATAT-
* * * * * *
2238967 ATTTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATTAAAAATTGAGTGAAGATCATTACTA
260 ATTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
*
2239032 GAAACCAAGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGATGAGAAAAAAAAC
325 GAAACCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGAGAAAAAAAAC
* * * *
2239097 TTTCTCGCAAAATCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATATTTACGGTGCCTA
390 TTTCTCGCAAAATCAAAGCACCAATAACATGTATCATAATGAGAAGACTATATTTAAGGTGCCTA
*
2239162 ATCTTGAAAAGAATGGGGAAT
455 ATCTTAAAAAGAATGGGGAAT
* *
2239183 AGTATGAGTATTCATGTTTGCCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAATGGTGGAAA
1 AGTATGAGTATTCAAGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * * **
2239248 GAAAAGCTTTTCTTCCGGCACGAAAGCAACAATGTCATGTATCCTAAT-AAAGAGAATGTGTTTT
66 GAAAAGC-TTTCTTCCGACACCAAAGCAACAATGTCATGCATCCTAATGAAA-AGAATGCATTTT
* *
2239312 TGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAGGGAT
129 TGGATCCCAATCCTGAAAAGAACAGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAGGGAT
** * * *
2239377 GAACTTTGATATTAAGTAAAATGGGGCAAAGAAAAGA-TTTCCACGGAAAAGAAAGTCATTAATA
194 GAACTTTGATATTAAGTAAAAAAGGGCAAAGAAAAGATTTTCCACGCAAAAGAAAATCATCAATA
2239441 T-TTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACT
259 TATTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACT
* * * **
2239505 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGC
324 AGAAACCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGAGAAAAAAAA
* * *
2239570 CTTTCTTGC-GAATCCAAAGCACCAATAACATGTATCATAATGAGAAGACTATGTTTAAGGTGCC
389 CTTTCTCGCAAAAT-CAAAGCACCAATAACATGTATCATAATGAGAAGACTATATTTAAGGTGCC
2239634 TAATCTTAAAAAGAATGGGGAAT
453 TAATCTTAAAAAGAATGGGGAAT
* *
2239657 AGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGAA
1 AGTATGAGTATTCAAGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAA
2239721 TGTAATATCA
Statistics
Matches: 480, Mismatches: 55, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
473 3 0.01
474 251 0.52
476 89 0.19
477 137 0.29
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
AGTATGAGTATTCAAGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
GAAAAGCTTTCTTCCGACACCAAAGCAACAATGTCATGCATCCTAATGAAAAGAATGCATTTTTG
GATCCCAATCCTGAAAAGAACAGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAGGGATGA
ACTTTGATATTAAGTAAAAAAGGGCAAAGAAAAGATTTTCCACGCAAAAGAAAATCATCAATATA
TTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAG
AAACCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGAGAAAAAAAACT
TTCTCGCAAAATCAAAGCACCAATAACATGTATCATAATGAGAAGACTATATTTAAGGTGCCTAA
TCTTAAAAAGAATGGGGAAT
Found at i:2239966 original size:288 final size:290
Alignment explanation
Indices: 2239442--2240009 Score: 782
Period size: 288 Copynumber: 2.0 Consensus size: 290
2239432 TCATTAATAT
2239442 TTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAG
1 TTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAG
* *
2239507 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGATAGGAAAAAAGCCT
* * ** *
2239572 TTCTTGCGAATCCAAAGCACCAATAACATGTATCATAATGAGAAGACTATGTTTAAGGTGCCTAA
131 TTCTTGCAAAACCAAAGCACCAATAACATGTATCATAATGAGAAGACTACATTTAAGGCGCCTAA
* * * * * *
2239637 TCTTAAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTT-AAGAGACAAACTTTGA
196 TATCAAAAAGAATGGGGAATAGTATAACTATTCAAGTTTGTCTTATTTAAACAAACAAACTTTGA
*
2239701 TT-CTATTAAAAATGGTGGAATGTAATATCA
261 TTCCT-TCAAAAATGGTGGAATGTAATATCA
* * * * *
2239731 TTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATC-AAAAATGAATGACGATCATTACTGG
1 TTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAG
* * * *
2239795 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACATTATAAATATTGGTAGGAAGAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGATAGGAAAAAAGCCT
* * * * * * *
2239860 TTCTTGCAAAAGCAAAGCATCAATATCGTGTATCTTTATGAGAAGACTACATTTATGGCGCCTAA
131 TTCTTGCAAAACCAAAGCACCAATAACATGTATCATAATGAGAAGACTACATTTAAGGCGCCTAA
* * * * * *
2239925 TATCGAAAAGAATGGGGATTAGTATAACTTTTCATGTTTGTCTTATTTAAACAAACTAATTTTGA
196 TATCAAAAAGAATGGGGAATAGTATAACTATTCAAGTTTGTCTTATTTAAACAAACAAACTTTGA
2239990 TTCCTTCAAAAATGGTGGAA
261 TTCCTTCAAAAATGGTGGAA
2240010 AGAAAAGCTT
Statistics
Matches: 241, Mismatches: 36, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
288 175 0.73
289 64 0.27
290 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (290 bp):
TTTATCCTAATGAGGAGAATGTGCTTAGAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAG
AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGATAGGAAAAAAGCCT
TTCTTGCAAAACCAAAGCACCAATAACATGTATCATAATGAGAAGACTACATTTAAGGCGCCTAA
TATCAAAAAGAATGGGGAATAGTATAACTATTCAAGTTTGTCTTATTTAAACAAACAAACTTTGA
TTCCTTCAAAAATGGTGGAATGTAATATCA
Found at i:2241500 original size:476 final size:475
Alignment explanation
Indices: 2239724--2241803 Score: 2568
Period size: 476 Copynumber: 4.4 Consensus size: 475
2239714 GGTGGAATGT
* *
2239724 AATATCATTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCA-AAAATGAATGACGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* ** * * * *
2239788 TTACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACATTATAAATATTGGTAGGAAG
66 ATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAG
* * *
2239853 AAAGCCTTTCTTGCAAAAGCAAAGCATCAATATCGTGTATCTTTATGAGAAGACTACATTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATGG
* * * * * *
2239918 CGCCTAAT-ATCGAAAAGAATGGGGATTAGTATAACTTTTCATGTTTGTCTTATTTAAACAAACT
196 TGCCTAATCCT-GAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTT-AAGAGACA
* * *
2239982 AATTTTGATTCCTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACAGCGAAGCAACAATGTC
259 AACTTTGATT-CTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAACAATGTC
* * * * *
2240047 ATGCATTCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGGGATTGTTACGA
323 ATGCATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * * * * * ***
2240112 GAATCGATCCTTTTCTTTTTTAAGGGAT-ACATTTTGATTTTAGGGT---TTAGGGTTTAGAAAA
388 GAATCGATGCTTGTCTTTTTTAAGGGATGA-ACTTTGATATTA-AGTAAAATAGGGCAAAGAAAA
* * * *
2240173 GATTTCCACGGACAA-GAAAGTCATT
451 GATTTCCATGCAAAAGGAAAG-CATC
* * *
2240198 AATATCATTTATCCTAATGGGGAGAATGTGTTTATAATGCCTAATCAAAAAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
2240263 TTGCTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGCTAGGAAA
66 ATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGG-AA
* ** * * * ** *
2240328 AAAAGCCTTTCTTGCGAATTCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAG
130 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATG
* * *** * *
2240393 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGTATTCAAGTTTGTCTTATTTAAGAGAAAA
195 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
2240458 ACTTTGATTCTTTGAAAAAGGGT-GAAAGGAAAAGCTTTTCTTGTGACACGAAAGCATCAATGTC
260 ACTTTGATTC-TTCAAAAATGGTGGAAA-GAAAAGCTTTTCTTGTGACACCAAAGCAACAATGTC
* * * *
2240522 ATGTATCCTATTGAAGAGAATGTG--TTT---TCCCAATCTTGAAAAGAATGGAGACTGTTACTA
323 ATGCATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * * *
2240582 GAATTGATGCTTGTCTTATTCAAGGGATGAACATTGATATTAAGTAAAATAGGGCAAAGAAAAGA
388 GAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA
* * *
2240647 TTTCCATGCAATAGAAAATCATC
453 TTTCCATGCAAAAGGAAAGCATC
2240670 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAT---TG-A-AT--
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * *
2240727 -GA--AG-ATCCATGTTTGGCTCATTTGAAGCACGAACTTAGACATTACAAAAATTGGTAGGAAG
66 ATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAG
* * *
2240788 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAGCCTTATGAGAAGACTACATTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATGG
* * * *
2240853 TGCCTAATCC-CAAAAAAATGGGGATTAGTACAACTATTTATGTTTGTCTTATTTAAGAGACAAA
196 TGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAA
*** * * *
2240917 CTTTGATTCTATCAAAAATGGCAAAAAAAAAAGTTTTTCTTGTGACACCAAAGCATCAATGTCAT
261 CTTTGATTCT-TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAACAATGTCAT
* *
2240982 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCATTCTTGAAAAGAATGGAGATTGTTACGAGA
325 GCATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
*
2241047 ATCGATGCTTGTCTTTTTTAATGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATT
390 ATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATT
* *
2241112 TCTATACAAAAGGAAAGCATC
455 TCCATGCAAAAGGAAAGCATC
* * * * *
2241133 AATATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATAAACGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
2241198 ATACCCGAACCCACGTTTGGCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTAGGAAG
66 ATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAG
* * *
2241263 AAAGCCTTTCTTGTGAAACCAAAGCACCAATATCGTGTATCCTTATGAGAAAACTACATTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATGG
* * * *
2241328 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTGTCTTAATTAAGAGACAAA
196 TGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * **
2241393 CTTTGATTCTGTCAAAAACGGTGGATAGTAAAGCTTTTCTTGCAACACCAAAGCAACAATGT-AT
261 CTTTGATTCT-TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAACAATGTCA-
*
2241457 TGCATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAG
324 TGCATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
* * * * *
2241522 AATCAATGCTTGTCTTTTTTAAGGGAAGAAACTTTGATTTTAAAG-AAAATACGGTAAAGAAAAG
389 AATCGATGCTTGTCTTTTTTAAGGGATG-AACTTTGATATT-AAGTAAAATAGGGCAAAGAAAAG
2241586 ATTTCCATGCAAAAGGAAAGCATC
452 ATTTCCATGCAAAAGGAAAGCATC
* * * * * *
2241610 AATAACATTAATCTTGATGAGGAGAATGTG---A-AGTGCCTAATCATAAAATGAATAAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
2241671 ATACCAGAACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAG
66 ATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAG
* * *
2241736 AAAGCCTTTCCTGCGAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAAACTACATTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATGG
2241801 TGC
196 TGC
2241804 TTGCAAGCTC
Statistics
Matches: 1393, Mismatches: 180, Indels: 67
0.85 0.11 0.04
Matches are distributed among these distances:
457 1 0.00
458 117 0.08
459 70 0.05
460 52 0.04
461 2 0.00
463 153 0.11
464 4 0.00
466 2 0.00
467 2 0.00
468 3 0.00
469 4 0.00
470 61 0.04
471 5 0.00
472 71 0.05
473 158 0.11
474 53 0.04
475 268 0.19
476 285 0.20
477 79 0.06
478 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
ATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAG
AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATGG
TGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTCTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAACAATGTCATG
CATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAA
TCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTT
CCATGCAAAAGGAAAGCATC
Found at i:2242605 original size:20 final size:19
Alignment explanation
Indices: 2242579--2242654 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 19
2242569 ACTGTTAGTT
*
2242579 TCATGTATCGATACATTTG-
1 TCATGTATCGATACA-ATGA
2242598 TGCATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
*
2242618 TCATGTATCGATATACAAAGCA
1 TCATGTATCG--ATACAATG-A
*
2242640 TAATGTATCGATACA
1 TCATGTATCGATACA
2242655 TCTGGATGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
19 12 0.24
20 20 0.41
21 7 0.14
22 10 0.20
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:2242807 original size:22 final size:21
Alignment explanation
Indices: 2242758--2242817 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
2242748 AATTATTTTT
*
2242758 ACTT-AAAAACATTTGATTTAA
1 ACTTCAAAAACATTT-ATTCAA
2242779 AGC-TCAAAAACATTTATTCATA
1 A-CTTCAAAAACATTTATTCA-A
2242801 ACTTC-AAAACATTTATT
1 ACTTCAAAAACATTTATT
2242818 GATATTGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 19 0.56
22 15 0.44
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (21 bp):
ACTTCAAAAACATTTATTCAA
Found at i:2247874 original size:478 final size:478
Alignment explanation
Indices: 2243881--2253735 Score: 13259
Period size: 475 Copynumber: 20.7 Consensus size: 478
2243871 GAAGACTATG
* ** * * * *
2243881 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATTAGTATTCATGTTTTTGACTTATTTA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATG--TTTGTCTTATTTA
* * * **
2243946 AGAGACAAACTTTAATTCTATCAAAAACGGTGG-TAAGAAAAGCTTTTCTTGCAACATGAAAGCA
64 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAT-AGAAAAGCTTTTCTTGCGACACCAAAGCA
*
2244010 TCAATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAA-AATGGAGTT
128 TCAATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * **
2244074 TGTTACGAGAATCGATGCTTGTCTTCTTTAAGGGATGAACTTTGATATTAAGTGTACGATAGGGC
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--GTAAAATAGGGC
* * * * * * *
2244139 AAAGAAAAGATTTTCATGTAAAAGAAAATCATTAGTATCATTTATCCTAATGAGGAGAAT--GTG
256 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTG
* * * * * ** * *
2244202 TTTATAGTGCCTAATCAAAAAATGAATGAAAATCATTACTAGAATCCTTGTCTGTCTCATTTGAG
321 TTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAG
** * * * ** *
2244267 GCGCGGACTTAGACTTTACAAAAATTGGTGGGAAGTAAGCCTTTCTTGTGAAACCAAAGCAGCAA
386 GCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAA
2244332 T-TCGTGTATCCTTATGAGAAAACTACA
451 TATCGTGTATCCTTATGAGAAAACTACA
** * * *
2244359 TTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGCATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * **
2244424 AGACAAACTTTGATTCTATCAAAAACGGTGG-TAAGAAAAGCTTTTCCTGCGACATGAAAGCATC
66 AGACAAACTTTGATTCTATAAAAAACGGTGGAT-AGAAAAGCTTTTCTTGCGACACCAAAGCATC
* ** * *
2244488 AATGTCTTGCAACCTAATGAAGGGAATGTATTTTTGGATCCCAATCTTGAAAAAAATGGAGATTG
130 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * *
2244553 TTACGAGAATCGATGCTTGTCTTATTTCAGGGATGAACTTTGATATTAAGTAAAATAAGGCAAAG
195 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG
* * * * *
2244618 AAAA-ATTTCCATACAAAAG-AAATCATCAATATGATTAATCTTAATAAGGGGAAT--GTGTTTA
260 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTA
* * * * * *
2244679 TAGTGCCTAATCATAAATTGAATGAAGATCAATACTGGAATCCACATTTGGCTCATTTGAGGCAT
325 TAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCAT
* * * ** *
2244744 GAACTTAGACTTTATAAGAATTGGTAAGAAGAAAGTATTTCTTGCAAAAGCAAAGCATCAATATC
390 GAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
* **
2244809 ATGTATCCCTTATGAGATGACTACA
455 GTGTAT-CCTTATGAGAAAACTACA
* * * *
2244834 TTTATGGTGCCTAATCCCGAAAAGAATAGGGATTAGTC-CGAGTATTCATGTGTATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
* * * * * * *
2244898 AAGACAAACTTTGATTCTTTCAAAAACGGT-GATAG-AAAGCTTTTCTTACAACCCCAAAGCAAC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * *
2244961 AATGTCATGCATCCTAAAGAAGGGAACGTGTTTTTGGCTCCCAATTTTGAAGAGAATGGAGATTG
130 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * * **
2245026 TTACGGGAATCAATGCTTGTC-TATTTTAAGGGATGAACTTTGATTCTAAAG-AAAATACAGCAA
195 TTACGAGAATCGATGCTTGTCTTA-TTTAAGGGATGAACTTTGATT-TTAAGTAAAATAGGGCAA
* ** *
2245089 AGAAAAGATTTCCATGCAAAAGAAAATTATCCGTATCATTAATCTTAATGAGGAGAA--AGTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
* * * * * * * *
2245152 TATAGTGCCTAATCACAAATTTAATGAAGATCATTACTAGAATCTAAGTTTGTCTCATTTGAGGC
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * *
2245217 ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG-CTTCTCTTGCAAAACCAAAGC-TCCAA
388 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTT-TCTTGCAAAACCAAAGCAT-CAA
* **
2245280 TATCGTGTATCC-TATAGAGAAGACTATG
451 TATCGTGTATCCTTAT-GAGAAAACTACA
** * * *
2245308 TTTACAT-G-GCCTAATCTTGAAAAGACTGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTA
1 TTT--ATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTA
* * * ** *
2245371 AGAGACAAACTTTGATTCTATCAAAAACTGTGG-TAAGAAAAGCTTTTCTTGCAACATGAAAGCG
64 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAT-AGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
2245435 TCAATGTCTTGCATCCTAATGAAGGAAATGTGTTTTTCGATCCCAATCTTGAAAAGAATGGAGAT
128 TCAATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * * * * * *
2245500 TTTTACAAGAATCGATGCCTATCTTATTTCAGGGATTAACTTTGATATTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
* ** *
2245565 AGAAAAGATTTCCGTGCAAAAG-AAATCATCAATATCATTAATCTTAGGGAGGAGAAT--GTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
* * * * * * *
2245627 TATAGTGGCTAATCACGAATTGAATGAAGATCAATACTAGAATCAACATTTGGCTCATTTGAGGC
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * *
2245692 ATGAGCTTAGACTTTACAAAAATTGGTAGGAAGAATGCCTTTCTTACAAAAGCAAAGCATCAATA
388 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
*
2245757 TCGTGTCTCCTTATGAGAAAACTACA
453 TCGTGTATCCTTATGAGAAAACTACA
* * **
2245783 TTTATGGTGCCTAATCCAGAAAAGAATGGGGAATATTATGAGTATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
**
2245848 AGACAAACTTTGATTCTATAAAAAACGGTGG-TAAGAAAAGCTTTTCTTGCGACATGAAAGCATC
66 AGACAAACTTTGATTCTATAAAAAACGGTGGAT-AGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
2245912 AATGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAAGAATGGAGATTG
130 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * * *
2245977 TTACGAGAATCGATGCTTTTATTATTTAAAGGATGAACTTTGATTTTAAGCAAAATAGGGCAAAG
195 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG
*
2246042 AAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTAATCTTAATGAGGAGAAT--GTGTTTA
260 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTA
** * * * *
2246104 TAACGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAG
325 TAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCAT
* * *
2246169 GAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATAT
390 GAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT
*
2246233 CGTGTATCGTTATGAGAAAACTACA
454 CGTGTATCCTTATGAGAAAACTACA
* * * * * *
2246258 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCA-GCTTTGTTTTATTTAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATG-TTTGTCTTATTTAA
* * *
2246321 GAGACAAACTTCGATTCTATCAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAAC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
2246386 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTG
130 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * *
2246451 TTACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAG
195 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG
* * *
2246516 AAAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTAATGAGGAGAAT--GTGTTTA
260 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTA
* * * * * * * *
2246579 TATTGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCAT
325 TAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCAT
* * *
2246643 GAGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATC
390 GAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
2246708 GTGTATCCTTATGAGAAAACTACA
455 GTGTATCCTTATGAGAAAACTACA
* * ** *
2246732 TTTATGGTGCCTAATCCCGAAAAGAAT-AGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2246796 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2246861 CAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
129 CAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * *
2246924 TGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
2246989 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
* *
2247054 TATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGC
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * * *
2247119 ATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATG
388 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* ** *
2247182 TTGTGTATTTTTATGAGAAGACTACA
453 TCGTGTATCCTTATGAGAAAACTACA
* * **
2247208 TTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
** * * ** * * * *
2247272 GAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCTACGGCACCAAAGCATC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
2247336 AATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATT
130 AATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
*
2247400 GTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAAGTAAAATAGGGCAAA
194 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAA
2247465 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATACATTGTT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTGTT
* * *
2247530 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGT
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * *
2247595 AGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAAT
388 ATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
*
2247659 ATCGTGTATCGTTATGAGAAAACTACA
452 ATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2247686 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* *
2247750 AGACAAACTTCGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
2247815 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2247880 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * *
2247945 AAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTAATGAGGAGAAT--GTGTTTAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTAT
* * * * * * * *
2248008 ATTGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATG
326 AGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCATG
* * *
2248072 AGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCG
391 AACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
2248137 TGTATCCTTATGAGAAAACTACA
456 TGTATCCTTATGAGAAAACTACA
* ** *
2248160 TTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2248224 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2248289 CAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
129 CAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * *
2248352 TGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
2248417 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
* *
2248482 TATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGC
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * * *
2248547 ATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATG
388 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* ** *
2248610 TTGTGTATTTTTATGAGAAGACTACA
453 TCGTGTATCCTTATGAGAAAACTACA
* * * **
2248636 TTTATGGTGCCTAATCCCGACAACAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
** * * ** * * * *
2248700 GAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCTACGGCACCAAAGCATC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
2248764 AATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATT
130 AATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
*
2248828 GTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAAGTAAAATAGGGCAAA
194 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAA
*
2248893 GAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTAATCTTAATGAGGAGAATACATTGTT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTGTT
* * *
2248958 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGT
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * *
2249023 AGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAAT
388 ATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
*
2249087 ATCGTGTATCGTTATGAGAAAACTACA
452 ATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2249114 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* *
2249178 AGACAAACTTCGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
2249243 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2249308 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * *
2249373 AAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTAATGAGGAGAAT--GTGTTTAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTAT
* * * * * * * *
2249436 ATTGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATG
326 AGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCATG
* * *
2249500 AGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCG
391 AACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
2249565 TGTATCCTTATGAGAAAACTACA
456 TGTATCCTTATGAGAAAACTACA
* ** *
2249588 TTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * * *
2249652 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2249717 CAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
129 CAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * *
2249780 TGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
2249845 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
* *
2249910 TATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGC
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * * *
2249975 ATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATG
388 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* ** *
2250038 TTGTGTATTTTTATGAGAAGACTACA
453 TCGTGTATCCTTATGAGAAAACTACA
* * * **
2250064 TTTATGGTGCCTAATCCCGACAACAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
** * * ** *
2250128 GAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCTATG-G-CACCAAAGCA
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTT-CT-TGCGACACCAAAGCA
* *
2250190 TCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGA
128 TCAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGA
*
2250254 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAAGTAAAATAGGGCA
192 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCA
*
2250319 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTAATCTTAATGAGGAGAATACATTG
257 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTG
* *
2250384 TTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAT
321 TTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAG
* * * * *
2250449 GTAGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCA
386 GCATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCA
*
2250513 ATATCGTGTATCGTTATGAGAAAACTACA
450 ATATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2250542 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* *
2250606 AGACAAACTTCGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
2250671 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2250736 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * *
2250801 AAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTAATGAGGAGAAT--GTGTTTAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTAT
* * * * * * * *
2250864 ATTGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATG
326 AGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCATG
* * *
2250928 AGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCG
391 AACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
2250993 TGTATCCTTATGAGAAAACTACA
456 TGTATCCTTATGAGAAAACTACA
* ** *
2251016 TTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2251080 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* *
2251145 CAATGTCATGCAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
129 CAATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
* * *
2251209 GTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAAA
194 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAA
2251274 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATACATTGTT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTGTT
* *
2251339 TATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGC
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * * *
2251404 ATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATG
388 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* ** *
2251467 TTGTGTATTTTTATGAGAAGACTACA
453 TCGTGTATCCTTATGAGAAAACTACA
* * **
2251493 TTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
** * * ** * * * *
2251557 GAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCTACGGCACCAAAGCATC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
2251621 AATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATT
130 AATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
*
2251685 GTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAAGTAAAATAGGGCAAA
194 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAA
*
2251750 GAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTAATCTTAATGAGGAGAATACATTGTT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTGTT
* * *
2251815 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGT
323 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGC
* * * *
2251880 AGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAAT
388 ATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
*
2251944 ATCGTGTATCGTTATGAGAAAACTACA
452 ATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2251971 TTTACGGTGCCT-AT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2252034 AGACAAACTTCGATTCTATCAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
2252099 GTGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2252164 AACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
*
2252229 AAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTAATCTTAATGAGGAGAATACATTGTTTA
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTGTTTA
* * * *
2252294 TAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAG
325 TAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCAT
* * *
2252359 GAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATAT
390 GAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT
*
2252423 CGTGTATCGTTATGAGAAAACTACA
454 CGTGTATCCTTATGAGAAAACTACA
* * * * * *
2252448 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2252512 AGACAAACTTCGATTCTATCAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
2252577 GTGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2252642 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * * *
2252707 AAAGATTTCCATGGAAAAAAAAATCATCAATATCGTTAATCTTAATGAGGAGAAT--GTGTTTAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTAT
* * * * * * * *
2252770 ATTGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATG
326 AGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCATG
* * *
2252834 AGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCG
391 AACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
2252899 TGTATCCTTATGAGAAAACTACA
456 TGTATCCTTATGAGAAAACTACA
* ** *
2252922 TTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2252986 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2253051 CAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
129 CAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * *
2253114 TGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
*
2253179 AAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATACATTGT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT-CATTGT
* *
2253244 TTATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGG
322 TTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGG
* * * *
2253309 CATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAAT
387 CATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
* * ** *
2253372 GTTGTGTATTTTTATGAGAAGACTACA
452 ATCGTGTATCCTTATGAGAAAACTACA
* * **
2253399 TTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
* * * *
2253463 GAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCA
65 GAGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCA
*
2253528 TCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGA
128 TCAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGA
* * *
2253591 TTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCA
192 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCA
*
2253656 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAGACATTG
257 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAA-TCATTG
*
2253721 TTTATTGTGCCTAAT
321 TTTATAGTGCCTAAT
2253736 TGATGACAAC
Statistics
Matches: 8336, Mismatches: 919, Indels: 244
0.88 0.10 0.03
Matches are distributed among these distances:
472 2 0.00
473 275 0.03
474 1191 0.14
475 2640 0.32
476 1326 0.16
477 1142 0.14
478 1735 0.21
479 25 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (478 bp):
TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTTTAT
AGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCACGTTTGGCTCATTTGAGGCATG
AACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
TGTATCCTTATGAGAAAACTACA
Found at i:2248308 original size:953 final size:955
Alignment explanation
Indices: 2243881--2253713 Score: 13350
Period size: 953 Copynumber: 10.3 Consensus size: 955
2243871 GAAGACTATG
* ** * * * *
2243881 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATTAGTATTCATGTTTTTGACTTATTTA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATG--TTTGTCTTATTTA
* * * **
2243946 AGAGACAAACTTTAATTCTATCAAAAACGGTGG-TAAGAAAAGCTTTTCTTGCAACATGAAAGCA
64 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAT-AGAAAAGCTTTTCTTGCGACACCAAAGCA
*
2244010 TCAATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAA-AATGGAGTT
128 TCAATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * **
2244074 TGTTACGAGAATCGATGCTTGTCTTCTTTAAGGGATGAACTTTGATATTAAGTGTACGATAGGGC
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--GTAAAATAGGGC
* * * * * *
2244139 AAAGAAAAGATTTTCATGTAAAAGAAAATCATTAGTATCATTTATCCTAATGAGGAGAATGTGTT
256 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTT
* * * ** * *
2244204 TATAGTGCCTAATCAAAAAATGAATGAAAATCATTACTAGAATCCTTGTCTGTCTCATTTGAGGC
321 TATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGC
** * * * ** *
2244269 GCGGACTTAGACTTTACAAAAATTGGTGGGAAGTAAGCCTTTCTTGTGAAACCAAAGCAGCAAT-
386 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
**
2244333 TCGTGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTAT
451 TCGTGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTAT
* * *
2244398 GAGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGGTAAGAAA
516 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAA
* ** * * * * *
2244462 AGCTTTTCCTGCGACATGAAAGCATCAATGTCTTGCAACCTAATGAAGGGAATGTATTTTTGGAT
581 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT
* *
2244527 CCCAATCTTGAAAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTCAGGGATGAACT
646 CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * *
2244592 TTGATATTAAGTAAAATAAGGCAAAGAAAA-ATTTCCATACAAAAG-AAATCATCAATATGATTA
711 TTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTA
* * * * * * * *
2244655 ATCTTAATAAGGGGAAT--GTGTTTATAGTGCCTAATCATAAATTGAATGAAGATCAATACTGGA
776 ATCTTAATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGA
* * * * **
2244718 ATCCACATTTGGCTCATTTGAGGCATGAACTTAGACTTTATAAGAATTGGTAAGAAGAAAGTATT
841 ATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTT
* * **
2244783 TCTTGCAAAAGCAAAGCATCAATATCATGTATCCCTTATGAGATGACTACA
906 TCTTGCAAAACCAAAGCATCAATATCGTGTAT-CCTTATGAGAAAACTACA
* * * *
2244834 TTTATGGTGCCTAATCCCGAAAAGAATAGGGATTAGTC-CGAGTATTCATGTGTATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
* * * * * * *
2244898 AAGACAAACTTTGATTCTTTCAAAAACGGT-GATAG-AAAGCTTTTCTTACAACCCCAAAGCAAC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * *
2244961 AATGTCATGCATCCTAAAGAAGGGAACGTGTTTTTGGCTCCCAATTTTGAAGAGAATGGAGATTG
130 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * * **
2245026 TTACGGGAATCAATGCTTGTC-TATTTTAAGGGATGAACTTTGATTCTAAAG-AAAATACAGCAA
195 TTACGAGAATCGATGCTTGTCTTA-TTTAAGGGATGAACTTTGATT-TTAAGTAAAATAGGGCAA
* ** *
2245089 AGAAAAGATTTCCATGCAAAAGAAAATTATCCGTATCATTAATCTTAATGAGGAGAAAGTGTTTA
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTA
* * * * * * *
2245154 TAGTGCCTAATCACAAATTTAATGAAGATCATTACTAGAATCTAAGTTTGTCTCATTTGAGGCAC
323 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCAT
* *
2245219 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG-CTTCTCTTGCAAAACCAAAGC-TCCAATA
388 GAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTT-TCTTGCAAAACCAAAGCAT-CAATA
* ** ** *
2245282 TCGTGTATCC-TATAGAGAAGACTATGTTTACAT-G-GCCTAATCTTGAAAAGACTGGGGAATAG
451 TCGTGTATCCTTAT-GAGAAAACTACATTT--ATGGTGCCTAATCCCGAAAAGAATGGGGAATAG
* *
2245344 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACT-GTGGTAAG
513 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAG
* ** * * *
2245408 AAAAGCTTTTCTTGCAACATGAAAGCGTCAATGTCTTGCATCCTAATGAAG-GAAATGTGTTTTT
578 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG-AATGTGTTTTT
* * * * * * *
2245472 CGATCCCAATCTTGAAAAGAATGGAGATTTTTACAAGAATCGATGCCTATCTTATTTCAGGGATT
642 GGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
2245537 AACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCGTGCAAAAG-AAATCATCAATATC
707 AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
** * * * * * *
2245601 ATTAATCTTAGGGAGGAGAAT--GTGTTTATAGTGGCTAATCACGAATTGAATGAAGATCAATAC
772 ATTAATCTTAATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGC
* * * *
2245664 TAGAATCAACATTTGGCTCATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTAGGAAGAATG
837 TAGAATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAG
* * *
2245729 CCTTTCTTACAAAAGCAAAGCATCAATATCGTGTCTCCTTATGAGAAAACTACA
902 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * **
2245783 TTTATGGTGCCTAATCCAGAAAAGAATGGGGAATATTATGAGTATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
**
2245848 AGACAAACTTTGATTCTATAAAAAACGGTGG-TAAGAAAAGCTTTTCTTGCGACATGAAAGCATC
66 AGACAAACTTTGATTCTATAAAAAACGGTGGAT-AGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
2245912 AATGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTAAAAAGAATGGAGATTG
130 AATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * * *
2245977 TTACGAGAATCGATGCTTTTATTATTTAAAGGATGAACTTTGATTTTAAGCAAAATAGGGCAAAG
195 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG
2246042 AAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATA
260 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATA
** * * * * * *
2246106 ACGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAGGA
325 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGA
* * *
2246171 ACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCG
390 ACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
* * * * * * *
2246235 TGTATCGTTATGAGAAAACTACATTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAG
454 TGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAG
* * * * *
2246299 TATTCA-GCTTTGTTTTATTTAGGAGACAAACTTCGATTCTATC-AAAAACGGTGGATAGAAAAG
519 TATTCATG-TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAG
* * *
2246362 CTTTTCTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTC
583 CTTTTCTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATC
* *
2246426 CCAATCTTGAAAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTT
647 CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
2246491 TGATATCAAGTAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAA
712 TGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAA
* * * * * *
2246556 TCTTAATGAGGAGAAT--GTGTTTATATTGCCTAATTACAAATTGAATGAAGATCAATACTAGAA
777 TCTTAATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAA
* * * * *
2246619 TCCACATTTGGCTCA-TAGCGGCATGAGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTT
842 TCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTT
*
2246683 CTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
907 CTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * ** *
2246732 TTTATGGTGCCTAATCCCGAAAAGAAT-AGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2246796 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2246861 CAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
129 CAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * *
2246924 TGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
*
2246989 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT--GTGTT
* * * *
2247054 TATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGC
321 TATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGC
* * * * *
2247119 ATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATG
386 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* ** * * * *
2247182 TTGTGTATTTTTATGAGAAGACTACATTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTCT
451 TCGTGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTAT
* ** ** * ** *
2247247 GAGAATTCATGTTCATCTTATTTAAGAGACAAACTTTTTTTCTAT-TAAAAATGGCCGAGA-AAA
516 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAA
* * *
2247310 AGCTTTTCCTACGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT
581 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT
* *
2247375 CCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACT
646 CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
2247440 TTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTA
711 TTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTA
2247505 ATCTTAATGAGGAGAATACATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAG
776 ATCTTAATGAGGAGAAT-CATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAG
* * * * * *
2247570 AATCCATGTTTGGCTCATTTGATGTAGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCC
840 AATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCC
* *
2247634 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATGAGAAAACTACA
904 TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2247686 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* *
2247750 AGACAAACTTCGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
2247815 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2247880 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * *
2247945 AAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTAATGAGGAGAATGTGTTTATAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAG
* * * * * *
2248010 TGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATGAG
326 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGAA
* *
2248074 CTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCGTG
391 CTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTG
*
2248139 TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTA
456 TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTA
* *
2248203 TTCATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCT
521 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGG-AAAGAAAAGCT
*
2248268 TTTCTTGCGACACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTTTGGATCCCA
585 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCA
* * *
2248332 ATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGA
650 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
2248397 TTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCT
715 TTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCT
*
2248462 TAATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCC
780 TAATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCC
* * *
2248527 ACGTTTGGCTCATTCGAGGCATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTT
845 ACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTT
* * * * ** *
2248590 GCGAAACCAAAGCTTCAATGTTGTGTATTTTTATGAGAAGACTACA
910 GCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * * **
2248636 TTTATGGTGCCTAATCCCGACAACAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
** * * ** * * * *
2248700 GAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCTACGGCACCAAAGCATC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
2248764 AATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATT
130 AATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
*
2248828 GTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAAGTAAAATAGGGCAAA
194 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAA
* *
2248893 GAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTAATCTTAATGAGGAGAATACATTGTT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT---GTGTT
* * * * *
2248958 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGT
321 TATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGC
* * * *
2249023 AGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAAT
386 ATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
* * * * * *
2249087 ATCGTGTATCGTTATGAGAAAACTACATTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCA
450 ATCGTGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTA
* * * * * *
2249151 TTAGTATTCATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTAT-AAAAAACGGTGGATAGAA
515 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAA
* *
2249215 AAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGG
580 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGG
* * *
2249279 TTCCCAATCTTGAAAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGATGAA
644 ATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * *
2249344 CTTTGATATCAAGTAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCGT
709 CTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * * * *
2249409 TAATCTTAATGAGGAGAAT--GTGTTTATATTGCCTAATTACAAATTGAATGAAGATCAATACTA
774 TAATCTTAATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTA
* * * * *
2249472 GAATCCACATTTGGCTCA-TAGCGGCATGAGCTTGGACTTTACAAAAATTGGTAGGAAGAAAGCC
839 GAATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCC
*
2249536 TTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
904 TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* ** *
2249588 TTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTATTCATATTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * * * *
2249652 AGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTACGACACCAAACCAT
66 AGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2249717 CAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
129 CAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * *
2249780 TGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCAA
193 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAA
*
2249845 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATCATTGTT
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT--GTGTT
* * * *
2249910 TATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGC
321 TATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGC
* * * * *
2249975 ATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATG
386 ATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* ** * * * * *
2250038 TTGTGTATTTTTATGAGAAGACTACATTTATGGTGCCTAATCCCGACAACAATGGGGATTAGTCT
451 TCGTGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTAT
* ** ** * ** *
2250103 GAGAATTCATGTTCATCTTATTTAAGAGACAAACTTTTTTTCTAT-TAAAAATGGCCGAGA-AAA
516 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAA
2250166 AGCTTTTCCTATG-G-CACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG
581 AGCTTTT-CT-TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG
* *
2250229 ATCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAA
644 ATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
*
2250294 CTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCAT
709 CTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
2250359 TAATCTTAATGAGGAGAATACATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCT
774 TAATCTTAATGAGGAGAAT-CATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCT
* * * * * *
2250424 AGAATCCATGTTTGGCTCATTTGATGTAGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAG
838 AGAATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAG
* *
2250488 CCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATGAGAAAACTACA
902 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2250542 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* *
2250606 AGACAAACTTCGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
2250671 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2250736 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * *
2250801 AAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTAATGAGGAGAATGTGTTTATAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAG
* * * * * *
2250866 TGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATGAG
326 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGAA
* *
2250930 CTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCGTG
391 CTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTG
*
2250995 TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTA
456 TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTA
* *
2251059 TTCATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCT
521 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGG-AAAGAAAAGCT
* *
2251124 TTTCTTGCGACACCAAACCATCAATGTCATGCAT-CTAATGAAGAGAATGTGTTTTTGGATCCCA
585 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCA
* * *
2251188 ATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGA
650 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
2251253 TTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCT
715 TTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCT
*
2251318 TAATGAGGAGAATACATTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATC
780 TAATGAGGAGAAT-CATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATC
* * *
2251383 CACGTTTGGCTCATTCGAGGCATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCT
844 CACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCT
* * * * ** *
2251446 TGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATGAGAAGACTACA
909 TGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * **
2251493 TTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
** * * ** * * * *
2251557 GAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCTACGGCACCAAAGCATC
65 GAGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
2251621 AATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATT
130 AATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
*
2251685 GTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAAGTAAAATAGGGCAAA
194 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAA
* *
2251750 GAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTAATCTTAATGAGGAGAATACATTGTT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAAT---GTGTT
* * * * *
2251815 TATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGT
321 TATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGC
* * * *
2251880 AGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAAT
386 ATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
* * * * * *
2251944 ATCGTGTATCGTTATGAGAAAACTACATTTACGGTGCCT-AT-CTGAAGAGAATGGGGATTAGCA
450 ATCGTGTATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTA
* * * * * *
2252007 TTAGTATTCATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATC-AAAAACGGTGGATAGAA
515 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAA
* * *
2252071 AAGCTTTTCTTGCGACACCAAAGCAACAGTGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGG
580 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGG
* * * * *
2252135 TTCCCAATCTTGAAAAAAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAA
644 ATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
*
2252200 CTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCAT
709 CTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
2252265 TAATCTTAATGAGGAGAATACATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCT
774 TAATCTTAATGAGGAGAAT-CATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCT
* * * * * *
2252330 AGAATCCATGTTTGGCTCATTTGATGTAGGAACTTAGACTTTACAAAAATT-GCAGGGAGGAAAG
838 AGAATCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTA-GGAAGAAAG
* *
2252394 CCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATGAGAAAACTACA
902 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * * * * *
2252448 TTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGG
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2252512 AGACAAACTTCGATTCTATCAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCAACA
66 AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
2252577 GTGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAAAATGGAGATTGT
131 ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * *
2252642 TACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATATCAAGTAAAATAGGGCAAAGA
196 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
* * * *
2252707 AAAGATTTCCATGGAAAAAAAAATCATCAATATCGTTAATCTTAATGAGGAGAATGTGTTTATAT
261 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAG
* * * * * *
2252772 TGCCTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATGAG
326 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGAA
* *
2252836 CTTGGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCGTG
391 CTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTG
*
2252901 TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTA
456 TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTA
* *
2252965 TTCATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCT
521 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGG-AAAGAAAAGCT
*
2253030 TTTCTTGCGACACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTTTGGATCCCA
585 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCA
* * *
2253094 ATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGA
650 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
*
2253159 TTTTAAGTAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCT
715 TTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCT
*
2253224 TAATGAGGAGAATACATTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATTAATGCTAGAATC
780 TAATGAGGAGAAT-CATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATC
* * *
2253289 CACGTTTGGCTCATTCGAGGCATGAACCT--ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCT
844 CACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCT
* * * * ** *
2253352 TGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATGAGAAGACTACA
909 TGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
* * **
2253399 TTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTC-TGAGAATTCATGTTCATCTTATTTAA
1 TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-CATGAGTATTCATGTTTGTCTTATTTAA
* * * *
2253463 GAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCTTGCGACACCAAACCA
65 GAGACAAACTTTGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTTCTTGCGACACCAAAGCA
*
2253528 TCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGA
128 TCAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGA
* * *
2253591 TTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTAAGTAAAATAGGGCA
192 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCA
2253656 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAA
257 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAA
2253714 GACATTGTTT
Statistics
Matches: 7859, Mismatches: 897, Indels: 248
0.87 0.10 0.03
Matches are distributed among these distances:
947 3 0.00
948 233 0.03
949 907 0.12
950 1436 0.18
951 1151 0.15
952 928 0.12
953 2040 0.26
954 788 0.10
955 372 0.05
956 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (955 bp):
TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATAAAAAACGGTGGATAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAG
TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCATGAA
CTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTG
TATCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTA
TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAA
TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
AATGAGGAGAATCATTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTAATGCTAGAATCCA
CGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTG
CAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACA
Found at i:2252095 original size:157 final size:157
Alignment explanation
Indices: 2251913--2252573 Score: 395
Period size: 157 Copynumber: 4.2 Consensus size: 157
2251903 TGCAGGGAGG
* *
2251913 AAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATGAGAAAACTACATTTACGG
1 AAAGCTTTTCTTGCAAAACCAAAGCAGCAATATCATGTATCGTTATGAGAAAA-TACATTTACGG
* * *
2251978 TGCCT-ATCTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGGAGACAAAC
65 TGCCTAATCTGAAAAGAATGGAGATTAGCATTAGTATTCATGTTTGTCTTATTTAGGAGACAAAC
2252042 TTCGATTCTATCAAAAACGGTGGATAGA
130 TTCGATTCTATCAAAAACGGTGGATAGA
* * * * * * * ** *** **
2252070 AAAGCTTTTCTTGCGACACCAAAGCAACAGTGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTG
1 AAAGCTTTTCTTGCAAAACCAAAGCAGCAATATCATG-TATCGTTATG-AGAAAATACATTTACG
* * * * ** *
2252134 GTTCCCAATCTTGAAAAAAATGGAGATT-GTAACGAG-AATCGATGCTTT-TCTTATTTAAGG-G
64 GTGCCTAATC-TGAAAAGAATGGAGATTAG-CATTAGTATTC-ATG-TTTGTCTTATTT-AGGAG
* * * * *
2252195 ATAAACTTTGATTTTAAGT-AAAATA-GG-GCAAAGA
124 ACAAACTTCGATTCT-A-TCAAAA-ACGGTGGATAGA
* * * ** * * * *
2252229 AAAGATTTCCATGCAAAAGAAAATCATCAATGTCAT-TAATC-TTAATGAGGAGAATACATTGTT
1 AAAGCTTTTCTTGCAAAACCAAAGCAGCAATATCATGT-ATCGTT-ATGA-GAAAATACA---TT
** ** * * * * *
2252292 TATAGTGCCTAATCACAAAATGAATGAAGATTA--ATGCTAGAATCCATGTTTGGCTCATTT--G
60 TACGGTGCCTAATCTGAAAA-GAATGGAGATTAGCAT--TAGTATTCATGTTTGTCTTATTTAGG
** * * ** * *
2252353 ATGTAGGAACTTAGACTT-TA-CAAAAATTGCAGG-GAGG
122 A-G-ACAAACTTCGA-TTCTATCAAAAA-CGGTGGATAGA
* *
2252390 AAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATGAGAAAACTACATTTACGG
1 AAAGCTTTTCTTGCAAAACCAAAGCAGCAATATCATGTATCGTTATGAGAAAA-TACATTTACGG
* * *
2252455 TGCCTAATCTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGGAGACAAAC
65 TGCCTAATCTGAAAAGAATGGAGATTAGCATTAGTATTCATGTTTGTCTTATTTAGGAGACAAAC
2252520 TTCGATTCTATCAAAAACGGTGGATAGA
130 TTCGATTCTATCAAAAACGGTGGATAGA
* *
2252548 AAAGCTTTTCTTGCGACACCAAAGCA
1 AAAGCTTTTCTTGCAAAACCAAAGCA
2252574 ACAGTGTCAT
Statistics
Matches: 361, Mismatches: 101, Indels: 83
0.66 0.19 0.15
Matches are distributed among these distances:
156 2 0.01
157 87 0.24
158 63 0.17
159 87 0.24
160 22 0.06
161 51 0.14
162 45 0.12
163 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (157 bp):
AAAGCTTTTCTTGCAAAACCAAAGCAGCAATATCATGTATCGTTATGAGAAAATACATTTACGGT
GCCTAATCTGAAAAGAATGGAGATTAGCATTAGTATTCATGTTTGTCTTATTTAGGAGACAAACT
TCGATTCTATCAAAAACGGTGGATAGA
Found at i:2253142 original size:160 final size:158
Alignment explanation
Indices: 2245830--2253639 Score: 1053
Period size: 158 Copynumber: 49.2 Consensus size: 158
2245820 ATGAGTATTC
* * *
2245830 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAACGGTGG-TAAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* ** * * * * *
2245893 CTTGCGACATGAAAGCATCAATGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGAT-CCCAAT
64 CTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTATGG-TGCCCAAT
* *
2245957 CTTAAAAAGAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * * *
2245989 ATGCTTTTATTATTTAA-AGGAT-GAACTTTGATTT-T-AAGCAAAATAG-GGCAAAGAAAAGAT
1 ATG-TTTTCTTATTTAAGA-G-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCT
* * ** * * * *** *
2246049 TTCCATGC-AAAAAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATAACGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAATGTGTTTATGGTGCCC
** * * *
2246112 AATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCC
124 AATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * ** * * *
2246147 ATGTTTGGCTCATTT--GATGT-AGGAACTTAGACTTTA-CAAAAATTGCAGG--GAGGAAAGCC
1 ATGTTT-TCTTATTTAAGA-GTCA--AACTTTGA-TTTATCAAAAAATGGTGGAAAAGAAAAGCT
* * * * * * * *** * *
2246206 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATG-AGAAAACTACATTTACGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTATC-TAATGAAGAGAA-TGTGTTTATGGTGCCC
* * * ** *
2246270 AATC-TGAAGAGAATGGGGATTAG-CATTAGTATTC-
124 AATCTTGAAAAGAATGGAGATT-GTAACGAG-AATCG
* * * * * *
2246304 A-GCTTTGTTTTATTTAGGAGACAAACTTCGATTCTATC-AAAAACGGTGG-ATAGAAAAGCTTT
1 ATG-TTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTT
* * * * * *
2246366 TCTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA
63 TCTTGCGAAACCAAACCATCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTATGGTGCCCAA
* *
2246430 TCTTGAAAAAAATGGAGATTGTTACGAGAATCG
126 TCTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * * * * *
2246463 ATGCTTGTCTTATTTGAGGGAT-GAACTTTGA--TATCAAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * ** * * * * ** *
2246524 TCCATG-GAAAAGAAAATCATCAATATCGT-TAATCTTAATGAGGAGAATGTGTTTATATTGCCT
62 TTCTTGCG-AAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAATGTGTTTATGGTGCCC
** * * ** * *
2246587 AAT-TACAAATTGAATGAAGA-TCAATACTAGAATCC
124 AATCTTGAAA-AGAATGGAGATTGTA-ACGAGAATCG
** * * * * * * * *
2246622 ACATTTGGCTCA--T-AGCGGCATGAGCTTGGACTTTA-CAAAAATTGGTAGG--AAG-AAAGCC
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGA-TTTATCAAAAAATGGT-GGAAAAGAAAAGCT
* * * * * * * *** *
2246680 TTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATG-AGAAAACTACATTTATGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAA-TGTGTTTATGGTGCCC
** * ** *
2246744 AATCCCGAAAAGAATAGGA-ATAGT-GTGAGTATTC-
124 AATCTTGAAAAGAAT-GGAGATTGTAACGAG-AATCG
*
2246778 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* *
2246843 CTTGCGACACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
64 CTTGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGG-TGCCCAATC
2246907 TTGAAAAGAATGGAGATTGTAACGAGAATCG
128 TTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2246938 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * * ** * * * * *
2246999 TCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATCATTGTTTATAGTGCC
62 TTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT--GTGTTTATGGTGCC
* ** * * * *
2247063 TAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCC
123 CAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * * * ** * *
2247099 ACGTTTGGCTCA-TT-CGAGGCATGAACCTACA-TTA-CAAAAATTGGTAGG--AAG-AAAGCCT
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGATTTATCAAAAAATGGT-GGAAAAGAAAAGCTT
* * ** * * * *** *
2247157 TTCTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACATTTATGGTGCCTA
62 TTCTTGCGAAACCAAACCATCAATGTCATGTA-TCTAATGAAG-AGAATGTGTTTATGGTGCCCA
** * *
2247221 ATCCCGACAAGAATGGGGATTAGT--CTGAGAATTC-
125 ATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCG
* * ** * ** *
2247255 ATGTTCATCTTATTTAAGAGACAAACTTTTTTTCTAT-TAAAAATGGCCG-AGA-AAAAGCTTTT
1 ATGTT-TTCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * ** * * *
2247317 CCTACGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCTAAT
64 CTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTATGG-TGCCCAAT
*
2247381 CTTGAAAAGAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2247413 ATGCTTGTCTTATTTAAG-G-CATGAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGAT
1 ATG-TTTTCTTATTTAAGAGTCA--AACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCT
* * * ** * * * * *
2247473 TTCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTG
61 TTTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTG
* ** * * *
2247537 CCTAATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCC
121 CCCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * ** * * *
2247575 ATGTTTGGCTCATTT--GATGT-AGGAACTTAGACTTTA-CAAAAATTGCAGG--GAGGAAAGCC
1 ATGTTT-TCTTATTTAAGA-GTCA--AACTTTGA-TTTATCAAAAAATGGTGGAAAAGAAAAGCT
* * * * * * * *** * *
2247634 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATG-AGAAAACTACATTTACGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTATC-TAATGAAGAGAA-TGTGTTTATGGTGCCC
* * * ** *
2247698 AATC-TGAAGAGAATGGGGATTAG-CATTAGTATTC-
124 AATCTTGAAAAGAATGGAGATT-GTAACGAG-AATCG
* * * * * *
2247732 ATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * * * * *
2247795 CTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
64 CTTGCGAAACCAAACCATCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTATGGTGCCCAAT
* *
2247859 CTTGAAAAAAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * * * * *
2247891 ATGCTTGTCTTATTTGAGGGAT-GAACTTTGA--TATCAAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * ** * * * * ** *
2247952 TCCATG-GAAAAGAAAATCATCAATATCGT-TAATCTTAATGAGGAGAATGTGTTTATATTGCCT
62 TTCTTGCG-AAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAATGTGTTTATGGTGCCC
** * * ** * *
2248015 AAT-TACAAATTGAATGAAGA-TCAATACTAGAATCC
124 AATCTTGAAA-AGAATGGAGATTGTA-ACGAGAATCG
** * * * * * * * *
2248050 ACATTTGGCTCA--T-AGCGGCATGAGCTTGGACTTTA-CAAAAATTGGTAGG--AAG-AAAGCC
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGA-TTTATCAAAAAATGGT-GGAAAAGAAAAGCT
* * * * * * * *** *
2248108 TTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATG-AGAAAACTACATTTATGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAA-TGTGTTTATGGTGCCC
** * ** *
2248172 AATCCCGAAAAGAATGG-GAATAGT-GTGAGTATTC-
124 AATCTTGAAAAGAATGGAG-ATTGTAACGAG-AATCG
*
2248206 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* *
2248271 CTTGCGACACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
64 CTTGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGG-TGCCCAATC
2248335 TTGAAAAGAATGGAGATTGTAACGAGAATCG
128 TTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2248366 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * * ** * * * * *
2248427 TCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATCATTGTTTATAGTGCC
62 TTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT--GTGTTTATGGTGCC
* ** * * * *
2248491 TAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCC
123 CAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * * * ** * *
2248527 ACGTTTGGCTCA-TT-CGAGGCATGAACCTACA-TTA-CAAAAATTGGTAGG--AAG-AAAGCCT
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGATTTATCAAAAAATGGT-GGAAAAGAAAAGCTT
* * ** * * * *** *
2248585 TTCTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACATTTATGGTGCCTA
62 TTCTTGCGAAACCAAACCATCAATGTCATGTA-TCTAATGAAG-AGAATGTGTTTATGGTGCCCA
** * * *
2248649 ATCCCGACAACAATGGGGATTAGT--CTGAGAATTC-
125 ATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCG
* * ** * ** *
2248683 ATGTTCATCTTATTTAAGAGACAAACTTTTTTTCTAT-TAAAAATGGCCG-AGA-AAAAGCTTTT
1 ATGTT-TTCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * ** * * *
2248745 CCTACGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCTAAT
64 CTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTATGG-TGCCCAAT
*
2248809 CTTGAAAAGAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2248841 ATGCTTGTCTTATTTAAG-G-CATGAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGAT
1 ATG-TTTTCTTATTTAAGAGTCA--AACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCT
* * * ** * * * *
2248901 TTCCATGCAAAAGAAAATCATCAATGTCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTG
61 TTTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTG
* ** * * *
2248965 CCTAATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCC
121 CCCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * ** * * *
2249003 ATGTTTGGCTCATTT--GATGT-AGGAACTTAGACTTTA-CAAAAATTGCAGG--GAGGAAAGCC
1 ATGTTT-TCTTATTTAAGA-GTCA--AACTTTGA-TTTATCAAAAAATGGTGGAAAAGAAAAGCT
* * * * * * * *** * *
2249062 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATG-AGAAAACTACATTTACGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTATC-TAATGAAGAGAA-TGTGTTTATGGTGCCC
* * * ** *
2249126 AATC-TGAAGAGAATGGGGATTAG-CATTAGTATTC-
124 AATCTTGAAAAGAATGGAGATT-GTAACGAG-AATCG
* * * * * *
2249160 ATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * * * * *
2249223 CTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
64 CTTGCGAAACCAAACCATCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTATGGTGCCCAAT
* *
2249287 CTTGAAAAAAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * * * * *
2249319 ATGCTTGTCTTATTTGAGGGAT-GAACTTTGA--TATCAAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * ** * * * * ** *
2249380 TCCATG-GAAAAGAAAATCATCAATATCGT-TAATCTTAATGAGGAGAATGTGTTTATATTGCCT
62 TTCTTGCG-AAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAATGTGTTTATGGTGCCC
** * * ** * *
2249443 AAT-TACAAATTGAATGAAGA-TCAATACTAGAATCC
124 AATCTTGAAA-AGAATGGAGATTGTA-ACGAGAATCG
** * * * * * * * *
2249478 ACATTTGGCTCA--T-AGCGGCATGAGCTTGGACTTTA-CAAAAATTGGTAGG--AAG-AAAGCC
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGA-TTTATCAAAAAATGGT-GGAAAAGAAAAGCT
* * * * * * * *** *
2249536 TTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATG-AGAAAACTACATTTATGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAA-TGTGTTTATGGTGCCC
** * ** *
2249600 AATCCCGAAAAGAATGG-GAATAGT-GTGAGTATTC-
124 AATCTTGAAAAGAATGGAG-ATTGTAACGAG-AATCG
*
2249634 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * *
2249699 CTTACGACACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
64 CTTGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGG-TGCCCAATC
2249763 TTGAAAAGAATGGAGATTGTAACGAGAATCG
128 TTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2249794 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * * ** * * * * *
2249855 TCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATCATTGTTTATAGTGCC
62 TTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT--GTGTTTATGGTGCC
* ** * * * *
2249919 TAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCC
123 CAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * * * ** * *
2249955 ACGTTTGGCTCA-TT-CGAGGCATGAACCTACA-TTA-CAAAAATTGGTAGG--AAG-AAAGCCT
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGATTTATCAAAAAATGGT-GGAAAAGAAAAGCTT
* * ** * * * *** *
2250013 TTCTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACATTTATGGTGCCTA
62 TTCTTGCGAAACCAAACCATCAATGTCATGTA-TCTAATGAAG-AGAATGTGTTTATGGTGCCCA
** * * *
2250077 ATCCCGACAACAATGGGGATTAGT--CTGAGAATTC-
125 ATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCG
* * ** * ** *
2250111 ATGTTCATCTTATTTAAGAGACAAACTTTTTTTCTAT-TAAAAATGGCCG-AGA-AAAAGCTTTT
1 ATGTT-TTCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * * *
2250173 CCTATG-G-CACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCTA
64 -CT-TGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTATGG-TGCCCA
*
2250235 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
125 ATCTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2250269 ATGCTTGTCTTATTTAAG-G-CATGAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGAT
1 ATG-TTTTCTTATTTAAGAGTCA--AACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCT
* * * ** * * * *
2250329 TTCCATGCAAAAGAAAATCATCAATGTCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTG
61 TTTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTG
* ** * * *
2250393 CCTAATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCC
121 CCCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * ** * * *
2250431 ATGTTTGGCTCATTT--GATGT-AGGAACTTAGACTTTA-CAAAAATTGCAGG--GAGGAAAGCC
1 ATGTTT-TCTTATTTAAGA-GTCA--AACTTTGA-TTTATCAAAAAATGGTGGAAAAGAAAAGCT
* * * * * * * *** * *
2250490 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATG-AGAAAACTACATTTACGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTATC-TAATGAAGAGAA-TGTGTTTATGGTGCCC
* * * ** *
2250554 AATC-TGAAGAGAATGGGGATTAG-CATTAGTATTC-
124 AATCTTGAAAAGAATGGAGATT-GTAACGAG-AATCG
* * * * * *
2250588 ATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTAT-AAAAAACGGTGG-ATAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * * * * *
2250651 CTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
64 CTTGCGAAACCAAACCATCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTATGGTGCCCAAT
* *
2250715 CTTGAAAAAAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * * * * *
2250747 ATGCTTGTCTTATTTGAGGGAT-GAACTTTGA--TATCAAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * ** * * * * ** *
2250808 TCCATG-GAAAAGAAAATCATCAATATCGT-TAATCTTAATGAGGAGAATGTGTTTATATTGCCT
62 TTCTTGCG-AAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAATGTGTTTATGGTGCCC
** * * ** * *
2250871 AAT-TACAAATTGAATGAAGA-TCAATACTAGAATCC
124 AATCTTGAAA-AGAATGGAGATTGTA-ACGAGAATCG
** * * * * * * * *
2250906 ACATTTGGCTCA--T-AGCGGCATGAGCTTGGACTTTA-CAAAAATTGGTAGG--AAG-AAAGCC
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGA-TTTATCAAAAAATGGT-GGAAAAGAAAAGCT
* * * * * * * *** *
2250964 TTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATG-AGAAAACTACATTTATGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAA-TGTGTTTATGGTGCCC
** * ** *
2251028 AATCCCGAAAAGAATGG-GAATAGT-GTGAGTATTC-
124 AATCTTGAAAAGAATGGAG-ATTGTAACGAG-AATCG
*
2251062 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * *
2251127 CTTGCGACACCAAACCATCAATGTCATGCATCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
64 CTTGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGG-TGCCCAATC
2251191 TTGAAAAGAATGGAGATTGTAACGAGAATCG
128 TTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2251222 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * * ** * * * * *
2251283 TCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTGC
62 TTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTGC
* ** * * * *
2251347 CTAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCC
122 CCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * * * ** * *
2251384 ACGTTTGGCTCA-TT-CGAGGCATGAACCTACA-TTA-CAAAAATTGGTAGG--AAG-AAAGCCT
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGATTTATCAAAAAATGGT-GGAAAAGAAAAGCTT
* * ** * * * *** *
2251442 TTCTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACATTTATGGTGCCTA
62 TTCTTGCGAAACCAAACCATCAATGTCATGTA-TCTAATGAAG-AGAATGTGTTTATGGTGCCCA
** * *
2251506 ATCCCGACAAGAATGGGGATTAGT--CTGAGAATTC-
125 ATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCG
* * ** * ** *
2251540 ATGTTCATCTTATTTAAGAGACAAACTTTTTTTCTAT-TAAAAATGGCCG-AGA-AAAAGCTTTT
1 ATGTT-TTCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * ** * * *
2251602 CCTACGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCTAAT
64 CTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTATGG-TGCCCAAT
*
2251666 CTTGAAAAGAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2251698 ATGCTTGTCTTATTTAAG-G-CATGAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGAT
1 ATG-TTTTCTTATTTAAGAGTCA--AACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCT
* * * ** * * * *
2251758 TTCCATGCAAAAGAAAATCATCAATGTCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTG
61 TTTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTG
* ** * * *
2251822 CCTAATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCC
121 CCCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * ** * * *
2251860 ATGTTTGGCTCATTT--GATGT-AGGAACTTAGACTTTA-CAAAAATTGCAGG--GAGGAAAGCC
1 ATGTTT-TCTTATTTAAGA-GTCA--AACTTTGA-TTTATCAAAAAATGGTGGAAAAGAAAAGCT
* * * * * * * *** *
2251919 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATG-AGAAAACTACATTTACGGTG-CC
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTATC-TAATGAAGAGAA-TGTGTTTATGGTGCCC
* * * * ** *
2251982 TATC-TGAAGAGAATGGGGATTAG-CATTAGTATTC-
124 AATCTTGAAAAGAATGGAGATT-GTAACGAG-AATCG
* * * * * *
2252016 ATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATC-AAAAACGGTGG-ATAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * * * * * *
2252079 CTTGCGACACCAAAGCAACAGTGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
64 CTTGCGAAACCAAACCATCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTATGGTGCCCAAT
*
2252143 CTTGAAAAAAATGGAGATTGTAACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * *
2252175 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT-T-AAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * * ** * * * *
2252236 TCCATGCAAAAGAAAATCATCAATGTCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTGC
62 TTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTGC
* ** * * *
2252300 CTAATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCC
122 CCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * ** * * *
2252337 ATGTTTGGCTCATTT--GATGT-AGGAACTTAGACTTTA-CAAAAATTGCAGG--GAGGAAAGCC
1 ATGTTT-TCTTATTTAAGA-GTCA--AACTTTGA-TTTATCAAAAAATGGTGGAAAAGAAAAGCT
* * * * * * * *** * *
2252396 TTTCTTGCAAAACCAAAGCAGCAATATCGTGTATCGTTATG-AGAAAACTACATTTACGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTATC-TAATGAAGAGAA-TGTGTTTATGGTGCCC
* * * ** *
2252460 AATC-TGAAGAGAATGGGGATTAG-CATTAGTATTC-
124 AATCTTGAAAAGAATGGAGATT-GTAACGAG-AATCG
* * * * * *
2252494 ATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATC-AAAAACGGTGG-ATAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* * * * * * * *
2252557 CTTGCGACACCAAAGCAACAGTGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCTAAT
64 CTTGCGAAACCAAACCATCAATGTCATG-TAT-CTAATGAAGAGAATGTGTTTATGGTGCCCAAT
* *
2252621 CTTGAAAAAAATGGAGATTGTTACGAGAATCG
127 CTTGAAAAGAATGGAGATTGTAACGAGAATCG
* * * * * * *
2252653 ATGCTTGTCTTATTTGAGGGAT-GAACTTTGA--TATCAAGTAAAATAG-GGCAAAGAAAAGATT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAATGGTGGAAAAGAAAAGCTT
* * ** * * * * ** *
2252714 TCCATG-GAAAAAAAAATCATCAATATCGT-TAATCTTAATGAGGAGAATGTGTTTATATTGCCT
62 TTCTTGCG-AAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAATGTGTTTATGGTGCCC
** * * ** * *
2252777 AAT-TACAAATTGAATGAAGA-TCAATACTAGAATCC
124 AATCTTGAAA-AGAATGGAGATTGTA-ACGAGAATCG
** * * * * * * * *
2252812 ACATTTGGCTCA--T-AGCGGCATGAGCTTGGACTTTA-CAAAAATTGGTAGG--AAG-AAAGCC
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGA-TTTATCAAAAAATGGT-GGAAAAGAAAAGCT
* * * * * * * *** *
2252870 TTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTATG-AGAAAACTACATTTATGGTGCCT
61 TTTCTTGCGAAACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAA-TGTGTTTATGGTGCCC
** * ** *
2252934 AATCCCGAAAAGAATGG-GAATAGT-GTGAGTATTC-
124 AATCTTGAAAAGAATGGAG-ATTGTAACGAG-AATCG
*
2252968 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
1 ATGTTT-TCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* *
2253033 CTTGCGACACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
64 CTTGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGG-TGCCCAATC
2253097 TTGAAAAGAATGGAGATTGTAACGAGAATCG
128 TTGAAAAGAATGGAGATTGTAACGAGAATCG
* * *
2253128 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT-T-AAGTAAAATAGG-GCAAAA-AAAAGAT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTTATCAA--AAAAT-GGTGGAAAAGAAAAGCT
* * * ** * * * * *
2253188 TTCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATACATTGTTTATAGTG
61 TTTCTTGCGAAACCAAACCATCAATGTCATGT-ATC-TAATGAAGAGAAT---GTGTTTATGGTG
* ** * * * *
2253252 CCTAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCC
121 CCCAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCG
* * * * * * ** * *
2253290 ACGTTTGGCTCA-TT-CGAGGCATGAACCTACA-TTA-CAAAAATTGGTAGG--AAG-AAAGCCT
1 ATGTTT-TCTTATTTAAGAGTCA--AACTTTGATTTATCAAAAAATGGT-GGAAAAGAAAAGCTT
* * ** * * * *** *
2253348 TTCTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACATTTATGGTGCCTA
62 TTCTTGCGAAACCAAACCATCAATGTCATGTA-TCTAATGAAG-AGAATGTGTTTATGGTGCCCA
** * *
2253412 ATCCCGACAAGAATGGGGATTAGT--CTGAGAATTC-
125 ATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCG
*
2253446 ATGTTCATCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
1 ATGTT-TTCTTATTTAAGAGTCAAACTTTGATT-TATCAAAAAATGGTGGAAAAGAAAAGCTTTT
* *
2253511 CTTGCGACACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
64 CTTGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGG-TGCCCAATC
2253575 TTGAAAAGAATGGAGATTGTAACGAGAATCG
128 TTGAAAAGAATGGAGATTGTAACGAGAATCG
*
2253606 ATGCTTTTCTTATTTAAGGGAT-AAACTTTGATTT
1 ATG-TTTTCTTATTTAAGAG-TCAAACTTTGATTT
2253640 TAAGTAAAAT
Statistics
Matches: 5361, Mismatches: 1605, Indels: 1370
0.64 0.19 0.16
Matches are distributed among these distances:
155 7 0.00
156 368 0.07
157 729 0.14
158 1488 0.28
159 1391 0.26
160 560 0.10
161 442 0.08
162 341 0.06
163 25 0.00
164 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
ATGTTTTCTTATTTAAGAGTCAAACTTTGATTTATCAAAAAATGGTGGAAAAGAAAAGCTTTTCT
TGCGAAACCAAACCATCAATGTCATGTATCTAATGAAGAGAATGTGTTTATGGTGCCCAATCTTG
AAAAGAATGGAGATTGTAACGAGAATCG
Found at i:2261629 original size:42 final size:42
Alignment explanation
Indices: 2261574--2261692 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2261564 TTCTTCTCTC
* *
2261574 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2261616 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2261658 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2261693 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2261633 original size:12 final size:11
Alignment explanation
Indices: 2261607--2261682 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2261597 TCTATTATCT
*
2261607 CTCCTGTCTCTC
1 CTCCTATCTC-C
2261619 CTCCTATCATCC
1 CTCCTATC-TCC
2261631 CTCCTATCT--
1 CTCCTATCTCC
*
2261640 CTACTATCT--
1 CTCCTATCTCC
*
2261649 CTCCTGTCTCTC
1 CTCCTATCTC-C
2261661 CTCCTATCATCC
1 CTCCTATC-TCC
*
2261673 CTCCTCTCTC
1 CTCCTATCTC
2261683 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2261634 original size:24 final size:24
Alignment explanation
Indices: 2261598--2261683 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2261588 CCTCCTCTCT
* *
2261598 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2261622 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2261643 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2261664 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2261684 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2261658 original size:18 final size:18
Alignment explanation
Indices: 2261589--2261659 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2261579 CCTGTCATCC
* *
2261589 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2261607 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2261629 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2261649 CTCCTGTCTCT
1 CTCCTGTCTCT
2261660 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2265473 original size:12 final size:12
Alignment explanation
Indices: 2265458--2265492 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
2265448 TCTATTATCT
2265458 CTCCTATCTCTC
1 CTCCTATCTCTC
2265470 CTCCTATCATC-C
1 CTCCTATC-TCTC
2265482 CTCCTATCTCT
1 CTCCTATCTCT
2265493 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2265481 original size:42 final size:42
Alignment explanation
Indices: 2265425--2265543 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
2265415 TTCTTCTCTC
* * * *
2265425 CTCCTTCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCATCT
* *
2265467 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCCGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCATCT
* *
2265509 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2265544 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCATCT
Found at i:2265485 original size:24 final size:24
Alignment explanation
Indices: 2265449--2265534 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
2265439 CCTCCTCTCT
* *
2265449 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
2265473 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
**
2265494 CTATC-T--CTCCCGTCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
2265515 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTATCTCT
2265535 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 4 0.08
20 4 0.08
21 14 0.29
22 4 0.08
24 22 0.46
ACGTcount: A:0.12, C:0.47, G:0.01, T:0.41
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:2267954 original size:158 final size:155
Alignment explanation
Indices: 2267247--2267971 Score: 363
Period size: 158 Copynumber: 4.6 Consensus size: 155
2267237 TGCAGGGAGG
* * * * * ** *
2267247 AAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTG-TATCGTTATG-AGAAAACTACATTTAC
1 AAAGCTTTTCTTGCAAAACCAAAGCAACAATATCATGCT-TCCTAATGAAGAAAA-T-TGTTTAT
* * *
2267310 GGTGCCTAATCTGAAGAGAATGGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGGAGACAA
63 GGTGCCCAATCTGAAAAGAAT-GGGATTAGCATTAGTATTCATGTTTGTCTTATTTAGGAGACAA
2267375 ACTTCGATTCTATCAAAAACGGTGGATAGA
127 ACTTCGATTCTATCAAAAACGG-GGATAGA
* * * * ** *
2267405 AAAGCTTTTCTTGCGACACCAAAGCAACAGTGTCATGCTTCCTAATGAAGGGAATGTGTTTTTGG
1 AAAGCTTTTCTTGCAAAACCAAAGCAACAATATCATGCTTCCTAATGAAGAAAAT-TGTTTATGG
* * * ** * * *
2267470 TTCCCAATCTTGAAAAAAATGGAGATT-GTAACGAG-AATCGATGCTTT-TCTTATTTAAGAGAT
65 TGCCCAATC-TGAAAAGAATGG-GATTAG-CATTAGTATTC-ATG-TTTGTCTTATTTAGGAGAC
* * * *
2267532 AAACTTTGATTTTAAGT-AAAATA-GGGCAAAGA
125 AAACTTCGATTCT-A-TCAAAA-ACGGGGATAGA
* * * ** * * *** *
2267564 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGACGAGAATACATTGTTTA
1 AAAGCTTTTCTTGCAAAACCAAAGCAACAATATCATGCTTCCTAATGA--AGAA-A-ATTGTTTA
* * ** * * * * *
2267629 TAGTGCCTAATCACAAAATGAATGAAGATTA--ATGCTAGAATCCATGTTTGGCTCATTT--GAT
62 TGGTGCCCAATCTGAAAA-GAATG-GGATTAGCAT--TAGTATTCATGTTTGTCTTATTTAGGA-
** * * *
2267690 GTAGGAACTTAGA--C--TCAAAAATTGCAGGG--AGG
122 G-ACAAACTTCGATTCTATCAAAAA---CGGGGATAGA
* * * * *
2267722 AAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTG-TATCGTTATG-AGAAAATTGCATTTAT
1 AAAGCTTTTCTTGCAAAACCAAAGCAACAATATCATGCT-TCCTAATGAAGAAAATTG--TTTAT
* * *
2267785 GGTGCCTAATCTGAAGAGAATAGGGATTAGCATTAGTATTCATGTTTGTTTTATTTAGGAGACAA
63 GGTGCCCAATCTGAAAAGAAT-GGGATTAGCATTAGTATTCATGTTTGTCTTATTTAGGAGACAA
*
2267850 ACTTCGATTCTATCAAAAACGGTGGATGGA
127 ACTTCGATTCTATCAAAAACGG-GGATAGA
* * * * *
2267880 AAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCTTCCTAATGAAGGAAATGTGTTTTTGG
1 AAAGCTTTTCTTGCAAAACCAAAGCAACAATATCATGCTTCCTAATGAAGAAAAT-TGTTTATGG
* *
2267945 TTCCCAATCTTGAAAAAAATGGAGATT
65 TGCCCAATC-TGAAAAGAATGG-GATT
2267972 GTTACGAGAA
Statistics
Matches: 407, Mismatches: 112, Indels: 95
0.66 0.18 0.15
Matches are distributed among these distances:
153 4 0.01
154 36 0.09
155 26 0.06
156 9 0.02
157 4 0.01
158 150 0.37
159 103 0.25
160 17 0.04
161 12 0.03
162 42 0.10
163 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (155 bp):
AAAGCTTTTCTTGCAAAACCAAAGCAACAATATCATGCTTCCTAATGAAGAAAATTGTTTATGGT
GCCCAATCTGAAAAGAATGGGATTAGCATTAGTATTCATGTTTGTCTTATTTAGGAGACAAACTT
CGATTCTATCAAAAACGGGGATAGA
Found at i:2268997 original size:158 final size:158
Alignment explanation
Indices: 2268351--2271378 Score: 606
Period size: 158 Copynumber: 19.1 Consensus size: 158
2268341 AAATGGTGGA
* * *
2268351 AAAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTCATGTATC-TAATGAAGAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCG-CACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTGTT
* *
2268415 TTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGG
65 TATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATG-TTTTCTTATTTAAGG
2268479 GATAAACTTTGATTTTAAGTAAAATAGGGC
129 GATAAACTTTGATTTTAAGTAAAATAGGGC
* * ** * * * * *
2268509 AAAGAAAAGATTTCCATGCAGAAGAAAATCATCAATATCAT-TAATCTTAATGAGGACAATCATT
1 AAAGAAAAGATTTCCTTGC-GCACCAAAGCATCAATGTCATGT-ATCTTAATGAAGAGAAT--GT
** * * * * * * *
2268573 GTTTAT--ATGCCTAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCCACGTTTGGCTCAT
62 GTTTATGGATGCCTAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCGATGTTT-TCTTAT
** * * * ** *
2268633 TCGAGGCATGAAC-CT-ACATTACA--AAAATTGGTAG-
123 TTAAGGGATAAACTTTGATTTTA-AGTAAAATAGG--GC
* * * * ** * * * ***
2268667 GAAG-AAAGCCTTT-CTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACA
1 AAAGAAAAG-ATTTCCTTGCG-CACCAAAGCATCAATGTCATGTATCTTAATGAAG-AGAATGTG
** * * *
2268729 TTTATGG-TGCCTAATCCCGACAAGAATGGGGATTAGT--CTGAGAATTC-ATGTTCATCTTATT
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCGATGTT-TTCTTATT
* * * * *
2268790 TAAGAGACAAACTTT--TTTTCTATTAAAA-ATGGC
124 TAAGGGATAAACTTTGATTTT-AAGTAAAATAGGGC
** * *
2268823 CGAGAAAAAGCTTTTCCTATG-GCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG
1 AAAG-AAAAG-ATTTCCT-TGCGCACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTG
* *
2268887 TTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAA
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATG-TTTTCTTATTTAA
2268951 GGGATAAACTTTGATTTTAAGTAAAATAGGGC
127 GGGATAAACTTTGATTTTAAGTAAAATAGGGC
* ** ** * * * *
2268983 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATCATT
1 AAAGAAAAGATTTCCTTGC-GCACCAAAGCATCAATGTCATGT-ATCTTAATGAAGAGAAT--GT
* ** * * * * * * *
2269047 GTTTATAG-TGCCTAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCCACGTTTGGCTCAT
62 GTTTATGGATGCCTAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCGATGTTT-TCTTAT
** * * * ** *
2269108 TCGAGGCATGAAC-CT-ACATTACA--AAAATTGGTAG-
123 TTAAGGGATAAACTTTGATTTTA-AGTAAAATAGG--GC
* * ** * ** * * * ***
2269142 GAAG-AAAGCCTTT-CTTGCAAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACA
1 AAAGAAAAG-ATTTCCTTGC-GCACCAAAGCATCAATGTCATGTATCTTAATGAAG-AGAATGTG
** * * *
2269204 TTTATGG-TGCCTAATCCCGACAAGAATGGGGATTAGT--CTGAGAATTC-ATGTTCATCTTATT
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCGATGTT-TTCTTATT
* * *** * *
2269265 TAAGAG-TCAAACTTTGATTCTATCAAAAATGGTGGA
124 TAAGGGAT-AAACTTTGATTTTAAGTAAAATAG-GGC
* * *
2269301 AAAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTCATGTATC-TAATGAAGAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCG-CACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTGTT
* *
2269365 TTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGG
65 TATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATG-TTTTCTTATTTAAGG
2269429 GATAAACTTTGATTTTAAGTAAAATAGGGC
129 GATAAACTTTGATTTTAAGTAAAATAGGGC
* ** ** * * * *
2269459 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATCATT
1 AAAGAAAAGATTTCCTTGC-GCACCAAAGCATCAATGTCATGT-ATCTTAATGAAGAGAAT--GT
* ** * * * * * *
2269523 GTTTATAG-TGCCTAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATTC-ATCTTTGGCTCA
62 GTTTATGGATGCCTAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAA-TCGATGTTT-TCTTA
** * * * ** *
2269583 TTCGAGGCATGAAC-CT-ACATTACA--AAAATTGGTAG-
122 TTTAAGGGATAAACTTTGATTTTA-AGTAAAATAGG--GC
* * * * ** * * * ***
2269618 GAAG-AAAGCCTTT-CTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACA
1 AAAGAAAAG-ATTTCCTTGCG-CACCAAAGCATCAATGTCATGTATCTTAATGAAG-AGAATGTG
** * * * *
2269680 TTTATGG-TGCCTAATCCCGACAACAATGGGGATTAGT--CTGAGAATTC-ATGTTCATCTTATT
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCGATGTT-TTCTTATT
* * * *
2269741 TAAGAGACAAACGTTT--TTTCT-ATTAAAA-ATGGC
124 TAAGGGATAAAC-TTTGATTT-TAAGTAAAATAGGGC
** * * *
2269774 CGAGAAAAAGCTTTTCC-TACGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG
1 AAAG-AAAAG-ATTTCCTTGC-GCACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTG
* * *
2269838 TTTTTGGAT-CCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATG-TTTTCTTATTTAA
*
2269902 GGCATAAACTTTGATTTTAAGTAAAATAGGGC
127 GGGATAAACTTTGATTTTAAGTAAAATAGGGC
* ** ** * * * *
2269934 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATACAT
1 AAAGAAAAGATTTCCTTGC-GCACCAAAGCATCAATGTCATGT-ATCTTAATGAAGAGAAT---G
* ** * * * * *
2269998 TGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGA-T-TAATGCTAGAATCCATGTTTGGCTCA
61 TGTTTATGGATGCCTAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCGATGTTT-TCTTA
* * * ** * *
2270059 TTTGATGTAGGAACTTAGACTTTACA--AAAATTGCAGGG-
122 TTTAAGGGATAAACTTTGATTTTA-AGTAAAA-T--AGGGC
* * ** * * * * **
2270097 --AGGAAAGCCTTT-CTTGCAAAACCAAAGCAGCAATATCGTGTATCGTT-ATG-AGAAAACTAC
1 AAAGAAAAG-ATTTCCTTGC-GCACCAAAGCATCAATGTCATGTATC-TTAATGAAGAGAA-TGT
* * * * * ** * *
2270157 ATTTACGG-TGCCTAATC-TGAAGAGAATGGTGATT-TGCATTAGTATTC-ATGTTTGTTTTATT
62 GTTTATGGATGCCTAATCTTGAAAAGAATGGAGATTGT-AACGAG-AATCGATGTTT-TCTTATT
* * * *
2270218 T-AGGAGACAAACTTCGATTCT-A-TCAAAA-ACGGTGG
124 TAAGG-GATAAACTTTGATTTTAAGT-AAAATA-GG-GC
* * * * * *
2270253 ATAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGT
1 AAAGAAAAGATTTCCTTGCG-CACCAAAGCATCAATGTCATG-TATCTTAATGAAGAGAATGTGT
* * * * * **
2270317 TTTTGG-TTCCCAATCTTGAAAAAAATGGAGATTG-ATACGAGAATCGATGCTTGTCTTATTCGA
64 TTATGGATGCCTAATCTTGAAAAGAATGGAGATTGTA-ACGAGAATCGATG-TTTTCTTATTTAA
* * *
2270380 GGGATGAACTTTGATATCAAGTAAAATAGGGC
127 GGGATAAACTTTGATTTTAAGTAAAATAGGGC
* * ** * * * *
2270412 AAAGAAAAGATTTCCATG-GAAAAGAAAATCATCAATATCGT-TAATCTTAATGAGGAGAATGTG
1 AAAGAAAAGATTTCCTTGCG--CACCAAAGCATCAATGTCATGT-ATCTTAATGAAGAGAATGTG
** * * ** * ** * *
2270475 TTTAT--ATTGCCTAAT-TACAAATTGAATGAAGA-TCAATACTAGAATCCTTGTCTATCTCATT
63 TTTATGGA-TGCCTAATCTTGAAA-AGAATGGAGATTGTA-ACGAGAATCGATGT-TTTCTTATT
* * *** * * * *
2270536 TGAGGCACGGACTTAGACTTTACA--AAAATTGGTGG
124 TAAGGGATAAACTTTGATTTTA-AGTAAAATAGG-GC
* * ** * * * * **
2270571 GAAG-AAAGCCTTT-CTTGCAAAAACAAAGCATCAATATCGTGTATCCTT-ATG-AGAAAACTAC
1 AAAGAAAAG-ATTTCCTTGC-GCACCAAAGCATCAATGTCATGTAT-CTTAATGAAGAGAA-TGT
* ** * ** * *
2270632 ATTTATGG-TGCCTAATCCCGAAAAGAATGG-GAATAGT-GTGAGTATTC-ATATTTGTCTTATT
62 GTTTATGGATGCCTAATCTTGAAAAGAATGGAG-ATTGTAACGAG-AATCGATGTTT-TCTTATT
* * *
2270693 TAAGAG-TCAAACTTTGATTCTATCAA--AAAATGGTGGA
124 TAAGGGAT-AAACTTTGATT-T-T-AAGTAAAATAG-GGC
* * *
2270730 AAAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTCATGTATC-TAATGAAGAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCG-CACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTGTT
* *
2270794 TTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTAACGAGAATC-AGTGCTTTTCTTATTTAAG
65 TATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGA-TG-TTTTCTTATTTAAG
2270857 GGATAAACTTTGATTTTAAGTAAAATAGGGC
128 GGATAAACTTTGATTTTAAGTAAAATAGGGC
* ** ** * * * *
2270888 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATACAT
1 AAAGAAAAGATTTCCTTGC-GCACCAAAGCATCAATGTCATGT-ATCTTAATGAAGAGAAT---G
* ** * * * * * * *
2270952 TGTTTATAG-TGCCTAATC-ACAAAATGAAAGAAGA-T-TAATGCTAGAATCCACGTTTGGCTCA
61 TGTTTATGGATGCCTAATCTTGAAAA-GAATGGAGATTGTAA--CGAGAATCGATGTTT-TCTTA
* ** * * * ** *
2271013 GTCGAGGCATGAAC-CT-ACATTACA--AAAATTGGTAG-
122 TTTAAGGGATAAACTTTGATTTTA-AGTAAAATAGG--GC
* * * * ** * * * ***
2271048 GAAG-AAAGCCTTT-CTTGCGAAACCAAAGCTTCAATGTTGTGTATTTTTATG-AGAAGACTACA
1 AAAGAAAAG-ATTTCCTTGCG-CACCAAAGCATCAATGTCATGTATCTTAATGAAG-AGAATGTG
** * * *
2271110 TTTATGG-TGCCTAATCCCGACAAGAATGGGGATTAGT--CTGAGAATTC-ATGTTCATCTTATT
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATT-GTAAC-GAGAA-TCGATGTT-TTCTTATT
* * * * *
2271171 TAAGAGACAAACTTT--TTTTCTATTAAAA-ATGGC
124 TAAGGGATAAACTTTGATTTT-AAGTAAAATAGGGC
** * * * *
2271204 CGAGAAAAAGCTTTTCC-TACGGCACCAAGGCATCAATGTCATGTATCCTAATGAAGAGAATGTG
1 AAAG-AAAAG-ATTTCCTTGC-GCACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTG
* * *
2271268 TTTTTGGAT-CCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA
63 TTTATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATG-TTTTCTTATTTAA
* *
2271332 GGCATGAACTTTGATTTTAAGTAAAATAGGGC
127 GGGATAAACTTTGATTTTAAGTAAAATAGGGC
2271364 AAAGAAAAGATTTCC
1 AAAGAAAAGATTTCC
2271379 ATGCAAAAGA
Statistics
Matches: 2015, Mismatches: 599, Indels: 512
0.64 0.19 0.16
Matches are distributed among these distances:
153 1 0.00
154 2 0.00
155 15 0.01
156 172 0.09
157 158 0.08
158 649 0.32
159 539 0.27
160 220 0.11
161 152 0.08
162 101 0.05
163 2 0.00
164 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAGAAAAGATTTCCTTGCGCACCAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTGTTT
ATGGATGCCTAATCTTGAAAAGAATGGAGATTGTAACGAGAATCGATGTTTTCTTATTTAAGGGA
TAAACTTTGATTTTAAGTAAAATAGGGC
Found at i:2269581 original size:476 final size:475
Alignment explanation
Indices: 2267157--2277114 Score: 12080
Period size: 476 Copynumber: 20.9 Consensus size: 475
2267147 GTTTTCATCA
* * *
2267157 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAGGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* *
2267222 AGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
66 -GACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
* * * *
2267286 TCGTTATGAGAAAACTACATTTACGGTGCCTAAT-CTGAAGAGAATGGGGATTAG-CATTAGTAT
129 TCCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTC-TGAGTAT
* * * *
2267349 TCATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATCAAAAACGGTGGATAGAAAAGCTTTT
193 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * *
2267414 CTTGCGACACCAAAGCAACAGTGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
258 CTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT
* * * * *
2267478 CTTGAAAAAAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGAGATAAACTTTGATT
322 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
2267543 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTA
387 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTA
* *
2267608 ATGACGAGAATACATTGTTTATAGTGC
452 ATGAGGAGAAT---GTGTTTATAGTGC
* * *
2267635 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAGGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* *
2267700 AGAC--T-CAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
66 -GACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
* * * * * *
2267761 TCGTTATGAGAAAATTGCATTTATGGTGCCTAAT-CTGAAGAGAATAGGGATTAG-CATTAGTAT
129 TCCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTC-TGAGTAT
* * * **
2267824 TCATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATCAAAAACGGTGGATGGAAAAGCTTTT
193 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* *
2267889 CTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAG-GAAATGTGTTTTTGGTTCCCAA
258 CTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAG-AATGTGTTTTTGGATCCCAA
* *
2267952 TCTTGAAAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGAT
321 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * *
2268017 ATCAAGTAAAATATGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTT
386 TTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
*
2268082 AATGAGGAGAATGTGTTTATATTGC
451 AATGAGGAGAATGTGTTTATAGTGC
* * * * ** * * *
2268107 CTAATTACAAATTGAATGAAGATCAATACTAGAATCCACATTTGGCTCA-TAGCGGCATGAGCTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* *
2268171 GGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCGTGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
* * * *
2268236 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAATATTC
130 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTC
* * *
2268300 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
195 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGG-AAAGAAAAGCTTTT
*
2268365 CTTGCGACACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATC
258 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* * *
2268429 TTGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTT
323 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
*
2268494 TAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAATCATCAATATCATTAATCTTAA
388 TAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAA
* *
2268559 TGAGGACAATCATTGTTTATA-TGC
453 TGAGGAGAAT--GTGTTTATAGTGC
* * * *
2268583 CTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGCATGAACCT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * ** * * *
2268648 -ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATGTTGTGTATT
66 GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATC
* * * * *
2268712 TTTATGAGAAGACTACATTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTCTGAGAATTCA
131 CTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTCA
** ** * * ** *
2268777 TGTTCATCTTATTTAAGAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCT
196 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT-CT
2268841 ATG-G-CACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
260 -TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * *
2268904 TGAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTT
324 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
2268969 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
389 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
*
2269034 GAGGAGAATCATTGTTTATAGTGC
454 GAGGAGAAT--GTGTTTATAGTGC
* * * *
2269058 CTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCATTCGAGGCATGAACCT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* ** * * *
2269123 -ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCTTCAATGTTGTGTATT
66 GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATC
* * * * *
2269187 TTTATGAGAAGACTACATTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTCTGAGAATTCA
131 CTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTCA
** * *
2269252 TGTTCATCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAATGGTGGAAAAGAAAAGCTTTTCT
196 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCT
*
2269317 TGCGACACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATCTT
260 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTT
* * *
2269381 GAAAAGAATGGAGATTGTAACGAGAATCGATGCTTTTCTTATTTAAGGGATAAACTTTGATTTTA
325 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
2269446 AGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATG
390 AGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATG
*
2269511 AGGAGAATCATTGTTTATAGTGC
455 AGGAGAAT--GTGTTTATAGTGC
* * * * *
2269534 CTAATCACAAAATGAAAGAAGATTAATGCTAGAATTCATCTTTGGCTCATTCGAGGCATGAACCT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * ** * * *
2269599 -ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATGTTGTGTATT
66 GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATC
* * * * * *
2269663 TTTATGAGAAGACTACATTTATGGTGCCTAATCCCGACAACAATGGGGATTAGTCTGAGAATTCA
131 CTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTCA
** * * * ** * *
2269728 TGTTCATCTTATTTAAGAGACAAACGTTT-TTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCC
196 TGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
2269791 TACGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTT
260 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTT
* *
2269856 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGCATAAACTTTGATTTTA
325 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
2269921 AGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATG
390 AGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATG
*
2269986 AGGAGAATACATTGTTTATAGTGC
455 AGGAGAAT---GTGTTTATAGTGC
* * *
2270010 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAGGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* *
2270075 AGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
66 -GACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
* * * * * *
2270139 TCGTTATGAGAAAACTACATTTACGGTGCCTAAT-CTGAAGAGAATGGTGATTTG-CATTAGTAT
129 TCCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTC-TGAGTAT
* * * *
2270202 TCATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATCAAAAACGGTGGATAGAAAAGCTTTT
193 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * *
2270267 CTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
258 CTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT
* * ** *
2270331 CTTGAAAAAAATGGAGATTGATACGAGAATCGATGCTTGTCTTATTCGAGGGATGAACTTTGATA
322 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
2270396 TCAAGTAAAATAGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCGTTAATCTTA
387 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTA
*
2270461 ATGAGGAGAATGTGTTTATATTGC
452 ATGAGGAGAATGTGTTTATAGTGC
* * * * * * ** * *
2270485 CTAATTACAAATTGAATGAAGATCAATACTAGAATCCTTGTCTATCTCATTTGAGGCACGGACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * *
2270550 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCGTGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
* * *
2270615 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCCGAAAAGAAT-GGGAATAGTGTGAGTATTC
130 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTC
* * *
2270679 ATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAAATGGTGGAAAAGAAAAGCTTTT
195 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGG-AAAGAAAAGCTTTT
*
2270744 CTTGCGACACCAAACCATCAATGTCATGTAT-CTAATGAAGAGAATGTGTTTTTGGATCCCAATC
258 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* * *
2270808 TTGAAAAGAATGGAGATTGTAACGAGAATC-AGTGCTTTTCTTATTTAAGGGATAAACTTTGATT
323 TTGAAAAGAATGGAGATTGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATT
2270872 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTA
387 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTA
*
2270937 ATGAGGAGAATACATTGTTTATAGTGC
452 ATGAGGAGAAT---GTGTTTATAGTGC
* * * * *
2270964 CTAATCACAAAATGAAAGAAGATTAATGCTAGAATCCACGTTTGGCTCAGTCGAGGCATGAACCT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * ** * * *
2271029 -ACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATGTTGTGTATT
66 GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATC
* * * * *
2271093 TTTATGAGAAGACTACATTTATGGTGCCTAATCCCGACAAGAATGGGGATTAGTCTGAGAATTCA
131 CTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTCA
** ** * * ** * *
2271158 TGTTCATCTTATTTAAGAGACAAACTTTTTTTCTATTAAAAATGGCCGAGA-AAAAGCTTTTCCT
196 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * * *
2271222 ACGGCACCAAGGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTG
261 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTG
*
2271287 AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGATTTTAA
326 AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
2271352 GTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGA
391 GTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGA
*
2271417 GGAGAATACATTGTTTATAGTGC
456 GGAGAAT---GTGTTTATAGTGC
* * *
2271440 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGATGTAGGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* *
2271505 AGACTTTACAAAAATT-GCAGGGAGGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
66 -GACTTTACAAAAATTGGTA-GGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
* * * * *
2271569 TCGTTATGAGAAAACTGCATTTATGGTGCCTAAT-CTGAAGAGAATAGGGATTAG-CATTAGTAT
129 TCCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTC-TGAGTAT
* * * * *
2271632 TCATGTTTGTTTTATTTAGGAGACAAACTTCGATTCTATCTAAAACGGTGGATAGAAAAGCTTTT
193 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * *
2271697 CTTGCGACACCAAAGCAACAATGTCATGCT-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
258 CTTGCGACACCAAAGCATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT
* * * * *
2271761 CTTGAAAAAAATGGATATTGTTACGAGAATCGATACTTGTCTTCTTTAAGGGATGAACTTTGATA
322 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* ** * * * * * * *
2271826 TTAAGCATGATAAGGCGAAGAAAAGATTTTCAT-CTAAAAGAAAATAATTAATATCATTTATCCT
387 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTAATCTT
2271890 AATGAGGAGAATGTGTTTATAGTGC
451 AATGAGGAGAATGTGTTTATAGTGC
* * * * * ** * *
2271915 CTAATCAAAAAATGAATGAAGATCT-TTACTAGAATCCTTGTCTATCTCATTTGAGGCACGGACT
1 CTAATCACAAAATGAATGAAGAT-TAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACT
* ** * * *
2271979 TGGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAATCGAAGCAGCAAT-TCATGTA
65 T-GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
* ** * *
2272043 TACTTATGAGAAAACTACATTTATGGTGCCTAATCCCCAAAAGAATGGGGATTAGCCTAAGTATT
129 TCCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATT
* * * * * * *
2272108 CATGTTTATCTTATTTGAA-AAATAAAATTTGATTCTGTCAAAAATGGAGGATAGAAAGCTTTTC
194 CATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAA---CGG-T-GGAA-------
* * * * *
2272172 TTGCAGGATAGAAAGCTTTTCTTGCGACACGAAAGCAACAATGTCATGCATCCTAAAGAAGGGAA
246 ----A-G--A-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * * *
2272237 TGTGTTTTTGGCTCCCAATTTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTT-TT
303 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* * * * *
2272301 TAAGAGATGAACTTTGATTCTAAAG-AAAAAACGGCAAAAAAAAGATTTCCATGCAAAAGAAAAT
368 TAAGGGATGAACTTTGATT-TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* *
2272365 CTTCATTATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGC
432 CATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGC
* ** * * * * *
2272409 CTAATCACAAATTGAATGAAG-TTCGTTACTGGAATCTAT-TTTGTCTCATTTGAGGCACGAACT
1 CTAATCACAAAATGAATGAAGATT-AATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACT
* * * * * * *
2272472 TAGACTTTACAAAAATTAGTAGGAAAAAAGCTTTTCTTGCAAAACTAAAAAGAACCAATATCTTG
65 T-GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAAC--CAAAGCAGCAATATCGTG
** * * ** *
2272537 TATCC-TATTGAGAAAACTATGTTTATAG-G-CTGAATCTTGAAAAGAATGGGGAAGAGTATGAG
127 TATCCTTA-TGAGAAAACTACATTTATGGTGCCT-AATCCTGAAAAGAATGGGGATTAGTCTGAG
* * **
2272599 TATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCTATAAAAAACTTTGGAAAGAAAAGCT
190 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
** * *
2272664 TTTCTTGCGACATAAAAGAAAT-AA-GTCATGCT-TCCTAATGAACAGAATGTGTTTTTGGATCC
255 TTTCTTGCGACACCAAAG-CATCAATGTCATG-TATCCTAATGAAGAGAATGTGTTTTTGGATCC
* * * * * * *
2272726 CAACCTTGAAAAAAATGGAGATTGTTATGATAATCGACGCTAGTCTTATTTAAGGGATAAACTTT
318 CAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* *
2272791 GATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATTAATATCATTAAT
383 GATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAAT
*
2272855 CTTAATGAGGAGAATGTGTTTATAGTAC
448 CTTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * *
2272883 CTTATCTCAAAATGAATGAAGATCATTGCTAGAATCCTTGTTTGTCTCATTTGAGGCATGGACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * **
2272948 AGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTCTTGGGAAACCAAAGCAGCAAT-TCGTGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
* * *
2273012 CCTTATGAGAAAACTACA-TTATAGTGCCTAATCCTGAAAACAATAGGGATTAGTCTGAGTATTC
130 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTC
* * * * *
2273076 ATGTTTATCTTATTTAAAAGATAAACTTTGATTCTATCAAAAACGGTGGATAG-AAAGC-TTTAT
195 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * ** * * * * *
2273139 TGCGACACGAAAGCAACAATGTCATGCCTCCTAAAGAAGGGAATGTGTTTTTGGCTCTCAATTTT
260 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTT
* * * *
2273204 GAAAAGAATGGAGATTGTTACGGGAATCGATGCTTGTCTTTTTTAAGGGATGAGCTTTGATTCTA
325 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT-TT
* *
2273269 AAG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCCTCCATATCATTAATCTTAAT
389 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
2273333 GAGGAGAATGTGTTTATAGTGC
454 GAGGAGAATGTGTTTATAGTGC
* * * * ** *
2273355 CTAATCACAAATTGAATGAAGATCATTACTAGAATTTATGTTTGTCTCATTTGAGGC-TCGAACT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCAT-GAACT
* * * * * *
2273419 TAGACTTTACAAAAATTGCTGGGAAAAAAGCTTTTCTTGTGAAAA-CAAAGCAACAATATCGTGT
65 T-GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTG-CAAAACCAAAGCAGCAATATCGTGT
* * ** * * * *
2273483 ATCC-TATTGAGAAGATTATGTTTAT-ATGGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
128 ATCCTTA-TGAGAAAACTACATTTATGGT-GCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGT
* **
2273546 ATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGTGAGAAAAGCTT
191 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* ** * * * *
2273611 TTCTTGTGACATGAAAGCATTAATGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAA
256 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAA
* *
2273676 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATACTTGTCTTATTTCAGGGATGAACTTTGAT
321 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* *
2273741 ATTAAGTGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATATCATTAATCTT
386 TTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
2273805 AATGAGGAGAATGTGTTTATAGTGC
451 AATGAGGAGAATGTGTTTATAGTGC
* * * * ** ** **
2273830 CTAATCACAAATTGAATGAAGATCACTACTAGAATTTATGTTTATCTCATTTGAGGCACAAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * * * * * * *
2273895 AGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAAGCAAAGCACCAATACCATGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
** ** * * * *
2273960 CCTCT-TGAGAGGACTATGTTTA-CGTGGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
130 CCT-TATGAGAAAACTACATTTATGGT-GCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTAT
* * **
2274023 T-ATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGAAA-AAGTGCTTTT
193 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * * * *
2274086 CTTGCAACCCCAAAGCACCAATGTCATGTATCTTAGTGAAGAGAAAGTGTTTTTTGATCCCAATC
258 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* *
2274151 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGATAT
323 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
*
2274216 TAAGTAAAATAGGGCAAAGAAAAGATATTTCCATGCAAAAGAAAATCATTAATATCATTAATCTT
388 TAAGTAAAATAGGGCAAAGAAAAG--ATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
*
2274281 AATGAGGAGAATGTGTTTATAGTAC
451 AATGAGGAGAATGTGTTTATAGTGC
* * *
2274306 CTAATCATAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTAAGGCAAGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * * * ** * * *
2274371 AGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAAGAAAAGCACCAATACCATGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
** ** * * * *
2274436 CCTCT-TGAGAGGACTATGTTTA-CGTGGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
130 CCT-TATGAGAAAACTACATTTATGGT-GCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTAT
* * **
2274499 T-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAGCGGCGGAAA-AAGTGCTTTT
193 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * * *
2274562 CTTGCAACCCCAAAGCACCAATGTCATGTATCTTAATGAAGAGAAAGTGTTTTTTGATCCCAATC
258 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
*
2274627 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT
323 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
*
2274692 TAAGTAAAATAGGGCAAAGAAAAGATATTTCCATGCAAAAGAAAATCATTAATATCATTAATCTT
388 TAAGTAAAATAGGGCAAAGAAAAG--ATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
*
2274757 AATGAGGAGAATGTGTTTATAGTAC
451 AATGAGGAGAATGTGTTTATAGTGC
* * *
2274782 CTAATCATAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTAAGGCAAGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * ** * *
2274847 AGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCCGCAATATCATGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
* * * *
2274912 CGTTATGAGAAAACTTCATTTATGGTGCCTAAT-CTCGAAGAGAATGGGGATTAGTATGAGTATT
130 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTCTGAGTATT
* * *
2274976 CATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAACAGTGGATAGAAAAGCTTTTC
194 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * *
2275041 TTGCGACACGAAAGCATTAATGTCATGCATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCT
259 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * *
2275106 TGAAAAGAATGGAGATTGTTACGAGAATTGATGCTTGTCTTCTTTAAGGGATGAACTTTGATATT
324 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* ** * *
2275171 AAGCATGATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTAATCCTAAT
389 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
*
2275236 GAGGAGAATGTGTTTATAGTAC
454 GAGGAGAATGTGTTTATAGTGC
* * *
2275258 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTAGCTCATTTAAGGCAAGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * ** * * *
2275323 AGACTTTACAAAAATTGGTGGGAAGTAAGCCTTTCTTGTGAAGCCAAAGGAGCAAT-TCGTCTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
*
2275387 CCTTATGAGAAAACTACATTTATGGTGCCTAAT-CTCGAAAAGAATGTGGATTAGTCTGAGTATT
130 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTCTGAGTATT
* * * *
2275451 CATGTTTATCCTATTTTAA-CGACAAACTTTGATTCTATCAAAAACGGTGGATAG-AAAGCTTTT
194 CATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * ***
2275514 CTTGCGACACCAAAGCAACAATGTCATGTATCCTAAAGAA-AGGAATGTGTTTTTGGCTTTTAAT
258 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA-GAATGTGTTTTTGGATCCCAAT
* * * * * * *
2275578 TTTGAAAAGAATGGATATTGTTACGGGAATCGATGCTTGTCTTTTTTAAAGGATGAGCTTTTATT
322 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
2275643 CTAAAG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCCTCCATATCATTAATCTT
387 -TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
2275707 AATGAGGAGAATGTGTTTATAGTGC
451 AATGAGGAGAATGTGTTTATAGTGC
* * * * ** *
2275732 CTAATCACAAATTGAATGAAGATCATTACTAGAATTTATGTTTGTCTCATTTGAGGC-TCGAACT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCAT-GAACT
* * * * * *
2275796 TAGACTTTACAAAAATTGCTGGGAAAAAAGCTTTTCTTGTGAAAA-CAAAGCAACAATATCGTGT
65 T-GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTG-CAAAACCAAAGCAGCAATATCGTGT
* * ** * * * *
2275860 ATCC-TATTGAGAAGATTATGTTTAT-ATGGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
128 ATCCTTA-TGAGAAAACTACATTTATGGT-GCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGT
* **
2275923 ATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGTGAGAAAAGCTT
191 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* ** * * * *
2275988 TCCTTGCGACATGAAAGCATTAATGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGATCCCAA
256 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAA
* *
2276053 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATACTTGTCTTATTTCAGGGATGAACTTTGAT
321 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* *
2276118 ATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATTAATATCATTAATCTT
386 TTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
* *
2276182 AGTGAGGGGAATGTGTTTATAGTGC
451 AATGAGGAGAATGTGTTTATAGTGC
* * * * * **
2276207 CTAATCATAAATTGAATGAAGATCAATACTGGAATCCACATTTGGCTCATTTGAGGCATGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
* * * *
2276272 AGACTTTACAAAAATTAGTAGGAAAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATATCGTGTAT
66 -GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTAT
** * *
2276337 CCTTATGAGAAAACTACATTTATGGTGCCTAATCCCAAAAAAAAATGGGGATTAGTATGAGTATT
130 CCTTATGAGAAAACTACATTTATGGTGCCTAAT-CCTGAAAAGAATGGGGATTAGTCTGAGTATT
** * *
2276402 CATGTTAATCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGATAG-AAAGCTTTTC
194 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * * *
2276466 TTGCGACACCAAAGCAACAATGTCATGCATCTTTATGAAGGGAATGTGTTTTTGGCTCCCATTCT
259 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * * * **
2276531 TGAAAAGAATGGAGATTGTTATGGGAATCGGTGCTTGTCTTTTTTAAGCAATGAACTTTGATTTT
324 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * ** * * * * * * *
2276596 AAGGAAAATATGATAAAGAAAAGATTTCCATGCAATAGAAAACCATTAATAACATTTATCCTAAA
389 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
*
2276661 GAGGAGAATGTGTTTATAGTAC
454 GAGGAGAATGTGTTTATAGTGC
* * * * * * *
2276683 CTAATCAAAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTT
1 CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
** * * * * * *
2276748 AGACTTTACAAAAATTCATGGGAAAAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAACGTGTA
66 -GACTTTACAAAAATTGGTAGG-AAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTA
* ** * * * * *
2276813 T-CTTA-AAGAAAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTTTGAGAA
129 TCCTTATGAG-AAA-ACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTA
* * * * **
2276876 TTCATGTTTGTCTTTTTTAAGAGACAAACTTTGACTCTTTTAAAAGTGGTGGAAAGAAAAGCTTT
192 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
* * * * * * **
2276941 TCTTGTGATACGAAACCATCAATGTCATGCATCCTAAAGAAGAGAATGTGTTTTTGGATCGTAAT
257 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT
* * * *
2277006 CTTGAAAAGAATGGAGTTTGCTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATG
322 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
2277071 TTAAGTAAAATAGGGCACAA-ACAAGATTTCCATGCAATAGAAAA
387 TTAAGTAAAATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAA
2277115 CCTTTCTTGA
Statistics
Matches: 8389, Mismatches: 942, Indels: 299
0.87 0.10 0.03
Matches are distributed among these distances:
469 1 0.00
470 17 0.00
471 141 0.02
472 304 0.04
473 216 0.03
474 984 0.12
475 2392 0.29
476 2475 0.30
477 585 0.07
478 813 0.10
479 65 0.01
480 2 0.00
490 3 0.00
491 2 0.00
492 2 0.00
493 59 0.01
494 122 0.01
495 181 0.02
496 25 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
CTAATCACAAAATGAATGAAGATTAATGCTAGAATCCATGTTTGGCTCATTTGAGGCATGAACTT
GACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCGTGTATC
CTTATGAGAAAACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGAGTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTG
AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
GTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGA
GGAGAATGTGTTTATAGTGC
Found at i:2272181 original size:21 final size:21
Alignment explanation
Indices: 2272155--2272196 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2272145 TCAAAAATGG
2272155 AGGATAGAAAGCTTTTCTTGC
1 AGGATAGAAAGCTTTTCTTGC
2272176 AGGATAGAAAGCTTTTCTTGC
1 AGGATAGAAAGCTTTTCTTGC
2272197 GACACGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (21 bp):
AGGATAGAAAGCTTTTCTTGC
Done.