Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 13 of 16
Found at i:2272207 original size:20 final size:20
Alignment explanation
Indices: 2272160--2272207 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
2272150 AATGGAGGAT
*
2272160 AGAAAGCTTTTCTTGCAGGAT
1 AGAAAGCTTTTCTTGCA-GAC
2272181 AGAAAGCTTTTCTTGC-GAC
1 AGAAAGCTTTTCTTGCAGAC
2272200 ACGAAAGC
1 A-GAAAGC
2272208 AACAATGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 6 0.24
21 16 0.64
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (20 bp):
AGAAAGCTTTTCTTGCAGAC
Found at i:2273577 original size:158 final size:155
Alignment explanation
Indices: 2272448--2277021 Score: 805
Period size: 159 Copynumber: 28.9 Consensus size: 155
2272438 TGGAATCTAT
* * * * * * *
2272448 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTAGGAAAAAAGCTTTTCTTGCA
1 TTTGTCTTATTTAAGG-ACAAACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGGA
* * *
2272513 AAACTAAAAAGAACCAATATCTTGTATCCTATTGAGAA-AACTATGTTTATA-GG-CTGAATCTT
64 AAAC---AAAGCACCAATATCATGTATCCTAATGAGAAGAA-TATGTTTATATGGCCT-AATCTT
* *
2272575 GAAAAGAATGGGGAAGAGTATGAGTATTCATG
124 GAAAAGAATGGAGAATAGTATGAGTATTCATG
* * *
2272607 TTTGTCTTATTTAAGAGACAAACTTCGATTCTATAAAAAACTT--TGGAAAGAAAAGCTTTTCTT
1 TTTGTCTTATTTAAG-GACAAACTTTGATT-TA-CAAAAA-TTGGTGGGAA-AAAAGCTTTTCTT
* * *
2272670 GCGACATA-AAAG-A--AATAAGTCATGCT-TCCTAATGA-ACAGAATGTGTTT-T-TGGATCCC
61 G-GA-AAACAAAGCACCAAT-A-TCATG-TATCCTAATGAGA-AGAATATGTTTATATGG--CCT
* * * * *
2272727 AACCTTGAAAAAAATGGAG-ATTGTTATGA-TAATCGACG
118 AATCTTGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* * * * ** * * *
2272765 CTAGTCTTATTTAAGGGATAAACTTTGATATTA-AGTAAAATAGG-GCAAAGAAAAGATTTCCAT
1 TTTGTCTTATTTAA-GGACAAACTTTGAT-TTACA--AAAATTGGTGGGAA-AAAAGCTTTTCTT
* * ** * * * * *
2272828 GCAAAGA-AAATCATTAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATA-GTACCTTATC-
61 GGAAA-ACAAAGCACCAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAATCT
* * * * *
2272889 TCAAAATGAATGAAG-ATCA-T-TGCTAGAATCCTTG
123 TGAAAA-GAATGGAGAAT-AGTATG--AGTATTCATG
* * * * * * *
2272923 TTTGTCTCATTTGAGG-CATGGACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTCTTGG
1 TTTGTCTTATTTAAGGACA--AACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTT-G
* * * * ** *
2272987 GAAACCAAAGCAGCAAT-TCGTGTATCCTTATGAGAA-AACTA-CATTATA-GTGCCTAATCCTG
62 GAAAACAAAGCACCAATATCATGTATCCTAATGAGAAGAA-TATGTTTATATG-GCCTAATCTTG
* * *
2273048 AAAACAATAGG-GATTAGTCTGAGTATTCATG
125 AAAAGAAT-GGAGAATAGTATGAGTATTCATG
* * * * * *
2273079 TTTATCTTATTTAAAAGATAAACTTTGATTCTATCAAAAA-CGGT-GGATAGAAAGC-TTTATTG
1 TTTGTCTTATTT-AAGGACAAACTTTGATT-TA-CAAAAATTGGTGGGA-AAAAAGCTTTTCTTG
* * * ** *
2273141 CG-ACACGAAAGCAACAATGTCATGCCTCCTAA--AGAAGGGAATGTGTTT-T-TGGCTCTCAAT
62 -GAAAAC-AAAGCACCAATATCATGTATCCTAATGAGAA--GAATATGTTTATATGGC-CT-AAT
* * * * *
2273201 TTTGAAAAGAATGGAG-ATTGTTACG-GGAATCGATG
121 CTTGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* * ** * * * ** * * *
2273236 CTTGTCTTTTTTAAGGGATGAGCTTTGATTCTAAAGAAAATAGG-GCAAAGAAAAGATTTCCATG
1 TTTGTCTTATTTAA-GGACAAACTTTGATT-TACA-AAAATTGGTGGGAA-AAAAGCTTTTCTTG
* * * * * * *
2273300 CAAAAGAAAATC-CTCCATATCAT-TAATCTTAATGAGGAGAATGTGTTTATA-GTGCCTAATC-
62 GAAAA-CAAAGCAC-CAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAATCT
** * * * * *
2273361 ACAAATTGAATGAAG-ATCATTACT-AGAATTTATG
123 TGAAA-AGAATGGAGAAT-AGTA-TGAGTATTCATG
* * * * * *
2273395 TTTGTCTCATTTGAGGCTCGAACTTAGACTTTACAAAAATTGCTGGGAAAAAAGCTTTTCTTGTG
1 TTTGTCTTATTTAAGG-ACAAACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTG-G
* * * *
2273460 AAAACAAAGCAACAATATCGTGTATCCTATTGAGAAGATTATGTTTATATGGCCTAATCTTGAAA
63 AAAACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATGGCCTAATCTTGAAA
*
2273525 AGAATGGGGAATAGTATGAGTATTCATG
128 AGAATGGAGAATAGTATGAGTATTCATG
* * *
2273553 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGGTGGTGAGAAAAGCTTTTCTTG
1 TTTGTCTTATTTAAG-GACAAACTTTGATT-TA-CAAAAATTGGTGG-GAAAAAAGCTTTTCTTG
* ** ** * * * * * *
2273617 TGACATGAAAGCATTAATGTCTTGCATCCTAATGA-AGGGAATGTGTTT-T-TGGATCCCAATCT
62 -GAAAACAAAGCACCAATATCATGTATCCTAATGAGA-AGAATATGTTTATATGG--CCTAATCT
* * * *
2273679 TGAAAAGAATGGAG-ATTGTTACGAG-AATCGATA
123 TGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* * ** * * ** * * *
2273712 CTTGTCTTATTTCAGGGATGAACTTTGATATTA-AGTGAAATAGG-GCAAAGAAAAGATTTCCAT
1 TTTGTCTTATTT-AAGGACAAACTTTGAT-TTACA--AAAATTGGTGGGAA-AAAAGCTTTTCTT
* * * * * * * *
2273775 GCAAAAGAAATCATCAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATA-GTGCCTAATC-A
61 GGAAAACAAAGCACCAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAATCTT
* * * * * *
2273837 CAAATTGAATGAAG-ATCACTACT-AGAATTTATG
124 GAAA-AGAATGGAGAAT-AGTA-TGAGTATTCATG
* * * *
2273870 TTTATCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGCG
1 TTTGTCTTATTTAAGG-ACAAACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTG-G
* * ** * * **
2273935 AAAGCAAAGCACCAATACCATGTATCCTCTTGAGAGGACTATGTTTACGTGGCCTAATCTTGAAA
63 AAAACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATGGCCTAATCTTGAAA
* *
2274000 AGAATGGGGAATAGTATGAGTATT-ATT
128 AGAATGGAGAATAGTATGAGTATTCATG
* * *
2274027 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGG-CGGAAAAAGTGCTTTTCTTG
1 TTTGTCTTATTTAAG-GACAAACTTTGATT-TA-CAAAAATTGGTGGGAAAAA-AGCTTTTCTTG
* ** * * * * * *
2274090 CAACCCCAAAGCACCAATGTCATGTATCTTAGTGA-AGAGAA-AGTGTTT-TTTGATCCCAATCT
62 GAA-AACAAAGCACCAATATCATGTATCCTAATGAGA-AGAATA-TGTTTATATG-GCCTAATCT
* * *
2274152 TGAAAAGAATGGAG-ATTGTTACGAG-AATCGATG
123 TGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* ** * ** *
2274185 CTTGTCTTATTTAATGGATGAACTTTGATATTA-AGTAAAATAGG-GCAAAGAAAAGATATTTCC
1 TTTGTCTTATTTAA-GGACAAACTTTGAT-TTACA--AAAATTGGTGGGAA-AAAAGCT-TTT-C
* * * * ** * * * *
2274248 ATGCAAAAGAAAATCATTAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATA-GTACCTAAT
59 TTGGAAAA-CAAAGCACCAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAAT
* * * * *
2274311 CAT-AAAATGAATGAAGATTA--ATGCTAGAATCCATG
121 CTTGAAAA-GAATGGAGAATAGTATG--AGTATTCATG
* * *
2274346 TTTGGCTCATTTAAGG-CAAGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGC
1 TTTGTCTTATTTAAGGAC-A-AACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTG-
* ** * * **
2274410 GAAAGA-AAAGCACCAATACCATGTATCCTCTTGAGAGGACTATGTTTACGTGGCCTAATCTTGA
62 GAAA-ACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATGGCCTAATCTTGA
*
2274474 AAAGAATGGGGAATAGTATGAGTATT-ATG
126 AAAGAATGGAGAATAGTATGAGTATTCATG
** * *
2274503 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAGCGG-CGGAAAAAGTGCTTTTCTTG
1 TTTGTCTTATTTAAG-GACAAACTTTGATT-TA-CAAAAATTGGTGGGAAAAA-AGCTTTTCTTG
* ** * * * * *
2274566 CAACCCCAAAGCACCAATGTCATGTATCTTAATGA-AGAGAA-AGTGTTT-TTTGATCCCAATCT
62 GAA-AACAAAGCACCAATATCATGTATCCTAATGAGA-AGAATA-TGTTTATATG-GCCTAATCT
* * *
2274628 TGAAAAGAATGGAG-ATTGTTACGAG-AATCGATG
123 TGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* ** * ** *
2274661 CTTGTCTTATTTAAGGGATGAACTTTGATATTA-AGTAAAATAGG-GCAAAGAAAAGATATTTCC
1 TTTGTCTTATTTAA-GGACAAACTTTGAT-TTACA--AAAATTGGTGGGAA-AAAAGCT-TTT-C
* * * * ** * * * *
2274724 ATGCAAAAGAAAATCATTAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATA-GTACCTAAT
59 TTGGAAAA-CAAAGCACCAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAAT
* * * * *
2274787 CAT-AAAATGAATGAAGATTA--ATGCTAGAATCCATG
121 CTTGAAAA-GAATGGAGAATAGTATG--AGTATTCATG
* * * ** *
2274822 TTTGGCTCATTTAAGG-CAAGAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTGT
1 TTTGTCTTATTTAAGGAC-A-AACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTG-
* * * * *
2274886 GAAACCAAAGC-CGCAATATCATGTATCGTTATGAGAA-AACT-TCATTTAT-GGTGCCTAATCT
62 GAAAACAAAGCAC-CAATATCATGTATCCTAATGAGAAGAA-TAT-GTTTATATG-GCCTAATCT
* * * *
2274947 CGAAGAGAATGGGGATTAGTATGAGTATTCATG
123 TGAAAAGAATGGAGAATAGTATGAGTATTCATG
* **
2274980 TTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAAAAA-CAGT-GGATAGAAAAGCTTTTCTT
1 TTTGTCTTATTTAAG-GACAAACTTTGATT-TA-CAAAAATTGGTGGGA-A-AAAAGCTTTTCTT
* ** * * *
2275043 GCG-ACACGAAAGCATTAATGTCATGCATCCTAATGA-AGAGAATGTGTTT-T-TGGATCCTAAT
61 G-GAAAAC-AAAGCACCAATATCATGTATCCTAATGAGA-AGAATATGTTTATATGG--CCTAAT
* * * *
2275104 CTTGAAAAGAATGGAG-ATTGTTACGAGAATTGATG
121 CTTGAAAAGAATGGAGAATAG-TATGAGTATTCATG
* * ** ** * * * *
2275139 CTTGTCTTCTTTAAGGGATGAACTTTGATATT--AAGCA-TGATAGGGCAAAGAAAAGATTTCCA
1 TTTGTCTTATTTAA-GGACAAACTTTGAT-TTACAAAAATTGGT-GGG--AA-AAAAGCTTTTCT
* * * ** * * *
2275201 TGCAAAAGAAAATCATTAATATCAT-TAATCCTAATGAGGAGAATGTGTTTATA-GTACCTAATC
60 TGGAAAA-CAAAGCACCAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAATC
** * * * *
2275264 -ACAAAATGAATGAAGATTA--ATGCTAGAATCCATG
122 TTGAAAA-GAATGGAGAATAGTATG--AGTATTCATG
* * ** *
2275298 TTTAG-CTCATTTAAGG-CAAGAACTTAGACTTTACAAAAATTGGTGGGAAGTAAGCCTTTCTTG
1 TTT-GTCTTATTTAAGGAC-A-AACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTG
** * * * * * ** * *
2275361 TGAAGCCAAAGGAGCAAT-TCGTCTATCCTTATGAGAA-AACTACATTTAT-GGTGCCTAATCTC
62 -GAAAACAAAGCACCAATATCATGTATCCTAATGAGAAGAA-TATGTTTATATG-GCCTAATCTT
* *
2275423 GAAAAGAATGTG-GATTAGTCTGAGTATTCATG
124 GAAAAGAATG-GAGAATAGTATGAGTATTCATG
* * * * *
2275455 TTTATCCTATTTTAACGACAAACTTTGATTCTATCAAAAA-CGGT-GGATAGAAAGCTTTTCTTG
1 TTTGTCTTA-TTTAAGGACAAACTTTGATT-TA-CAAAAATTGGTGGGA-AAAAAGCTTTTCTTG
* * * * * * * *
2275518 CGACACCAAAGCAACAATGTCATGTATCCTAAAGA-AAGGAATGTGTTT-T-TGGCTTTTAATTT
62 -GAAAACAAAGCACCAATATCATGTATCCTAATGAGAA-GAATATGTTTATATGGC--CTAATCT
* * * * *
2275580 TGAAAAGAATGGA-TATTGTTACG-GGAATCGATG
123 TGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* * ** * * * * ** * * *
2275613 CTTGTCTTTTTTAAAGGATGAGCTTTTATTCTAAAGAAAATAGG-GCAAAGAAAAGATTTCCATG
1 TTTGTCTTATTT-AAGGACAAACTTTGATT-TACA-AAAATTGGTGGGAA-AAAAGCTTTTCTTG
* * * * * * *
2275677 CAAAAGAAAATC-CTCCATATCAT-TAATCTTAATGAGGAGAATGTGTTTATA-GTGCCTAATC-
62 GAAAA-CAAAGCAC-CAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAATCT
** * * * * *
2275738 ACAAATTGAATGAAG-ATCATTACT-AGAATTTATG
123 TGAAA-AGAATGGAGAAT-AGTA-TGAGTATTCATG
* * * * * *
2275772 TTTGTCTCATTTGAGGCTCGAACTTAGACTTTACAAAAATTGCTGGGAAAAAAGCTTTTCTTGTG
1 TTTGTCTTATTTAAGG-ACAAACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTG-G
* * * *
2275837 AAAACAAAGCAACAATATCGTGTATCCTATTGAGAAGATTATGTTTATATGGCCTAATCTTGAAA
63 AAAACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATGGCCTAATCTTGAAA
*
2275902 AGAATGGGGAATAGTATGAGTATTCATG
128 AGAATGGAGAATAGTATGAGTATTCATG
* * * *
2275930 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGGTGGTGAGAAAAGCTTTCCTTG
1 TTTGTCTTATTTAAG-GACAAACTTTGATT-TA-CAAAAATTGGTGG-GAAAAAAGCTTTTCTTG
* ** ** * * * * * *
2275994 CGACATGAAAGCATTAATGTCTTGCATCCTAATGA-AGGGAATGTGTTT-T-TGGATCCCAATCT
62 -GAAAACAAAGCACCAATATCATGTATCCTAATGAGA-AGAATATGTTTATATGG--CCTAATCT
* * * *
2276056 TGAAAAGAATGGAG-ATTGTTACGAG-AATCGATA
123 TGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* * ** * ** * * *
2276089 CTTGTCTTATTTCAGGGATGAACTTTGATATTA-AGTAAAATAGG-GCAAAGAAAAGATTTCCAT
1 TTTGTCTTATTT-AAGGACAAACTTTGAT-TTACA--AAAATTGGTGGGAA-AAAAGCTTTTCTT
* * * ** * * ** * *
2276152 GCAAAAGAAATCATTAATATCAT-TAATCTTAGTGAGGGGAATGTGTTTATA-GTGCCTAATCAT
61 GGAAAACAAAGCACCAATATCATGT-ATCCTAATGAGAAGAATATGTTTATATG-GCCTAATCTT
* * * * * **
2276215 -AAATTGAATGAAG-ATCAATACTG-GAATCCACA
124 GAAA-AGAATGGAGAAT-AGTA-TGAGTATTCATG
* * * * * * * *
2276247 TTTGGCTCATTTGAGG-CATGAACTTAGACTTTACAAAAATTAGTAGGAAAAAAGCCTTTCTTGC
1 TTTGTCTTATTTAAGGACA--AACTTTGA-TTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGG
* * * ** * **
2276311 AAAAGCAAAGCATCAATATCGTGTATCCTTATGAGAA-AACTACATTTAT-GGTGCCTAATCCCA
63 AAAA-CAAAGCACCAATATCATGTATCCTAATGAGAAGAA-TATGTTTATATG-GCCTAAT-CTT
* * * *
2276374 AAAAAAAATGGGGATTAGTATGAGTATTCATG
124 GAAAAGAATGGAGAATAGTATGAGTATTCATG
** * * *
2276406 TTAATCTTATTTAAAAGACAAACTTTGATTCTATCAAAAA-CGGT-GGATAGAAAGCTTTTCTTG
1 TTTGTCTTATTT-AAGGACAAACTTTGATT-TA-CAAAAATTGGTGGGA-AAAAAGCTTTTCTTG
* * * * * * * * * * *
2276469 CGACACCAAAGCAACAATGTCATGCATCTTTATGA-AGGGAATGTGTTT-T-TGGCTCCCATTCT
62 -GAAAACAAAGCACCAATATCATGTATCCTAATGAGA-AGAATATGTTTATATGG--CCTAATCT
* * * *
2276531 TGAAAAGAATGGAG-ATTGTTATG-GGAATCGGTG
123 TGAAAAGAATGGAGAATAG-TATGAGTATTC-ATG
* * * * * * *
2276564 CTTGTCTTTTTTAAGCA-ATGAACTTTGATTTTA-AGGAAAATATGAT--AAAGAAAAGATTTCC
1 TTTGTCTTATTTAAGGACA--AACTTTGA-TTTACA--AAAAT-TGGTGGGAA-AAAAGCTTTTC
* * * ** * * * * * *
2276625 ATGCAATAGA-AAACCATTAATAACATTTATCCTAAAGAGGAGAATGTGTTTATA-GTACCTAAT
59 TTGGAA-A-ACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATG-GCCTAAT
** * * *
2276688 C-AAAAAATGAATGAAG-ATCATTACT-AG-AATCTATG
121 CTTGAAAA-GAATGGAGAAT-AGTA-TGAGTATTC-ATG
* * * * **
2276723 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTCATGGGAAAAAAAGCTTTTCTTGC
1 TTTGTCTTATTTAAGG-ACAAACTTTGA-TTTACAAAAATTGGTGGG-AAAAAAGCTTTTCTTG-
* * * * * * * *
2276788 GAAACCAAAGCACCAATAACGTGTATCTTAAAGAAAAGACTATGTTTA-AGGTGCCTAATCTTGA
62 GAAAACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATG-GCCTAATCTTGA
* * *
2276852 AAAGAATGGGGAATAGTTTGAGAATTCATG
126 AAAGAATGGAGAATAGTATGAGTATTCATG
* ** * *
2276882 TTTGTCTTTTTTAAGAGACAAACTTTGACTCTT-TTAAAAGTGGTGGAAAGAAAAGCTTTTCTTG
1 TTTGTCTTATTTAAG-GACAAACTTTGA-T-TTACAAAAATTGGTGGGAA-AAAAGCTTTTCTTG
* * * * * * * *
2276946 TG-ATACGAAACCATCAATGTCATGCATCCTAAAGA-AGAGAATGTGTTT-T-TGGATCGTAATC
62 -GAAAAC-AAAGCACCAATATCATGTATCCTAATGAGA-AGAATATGTTTATATGG--CCTAATC
2277007 TTGAAAAGAATGGAG
122 TTGAAAAGAATGGAG
2277022 TTTGCTACGA
Statistics
Matches: 3129, Mismatches: 891, Indels: 790
0.65 0.19 0.16
Matches are distributed among these distances:
154 7 0.00
155 26 0.01
156 147 0.05
157 520 0.17
158 1020 0.33
159 1053 0.34
160 161 0.05
161 178 0.06
162 17 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (155 bp):
TTTGTCTTATTTAAGGACAAACTTTGATTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGGAAA
ACAAAGCACCAATATCATGTATCCTAATGAGAAGAATATGTTTATATGGCCTAATCTTGAAAAGA
ATGGAGAATAGTATGAGTATTCATG
Found at i:2274106 original size:157 final size:157
Alignment explanation
Indices: 2273464--2274676 Score: 471
Period size: 158 Copynumber: 7.7 Consensus size: 157
2273454 CTTGTGAAAA
* * * **
2273464 CAAAGCAACAATATCGTGTATCCTATTGAGA-AGATTATGTTTATATGGCCTAATCTTGAAAAGA
1 CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTATGTTTACGTGGCCTAATCTTGAAAAGA
* * *
2273528 ATGGGGAATAGTATGAGTAT-TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAA
66 ATGGAGAATAGTATGAGAATCT-ATGTTTGTCTTATTTAAG-GACAAACTTTGATT-TATCAAAA
* ** *
2273592 ACGGTGGTGAGAAAA--GCTTTTCTTGTGACAT
128 ACGG-CG-GA-AAAAGTGCTTTTCTTGCAACAC
* ** * * * * * * * * *
2273623 GAAAGCATTAATGTCTTGCATCCTAATGA-AGGGAATGTGTTT--TTGGATCCCAATCTTGAAAA
1 CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTATGTTTACGTGG--CCTAATCTTGAAAA
* * * ** * ** *
2273685 GAATGGAG-ATTGTTACGAGAATCGATACTTGTCTTATTTCAGGGATGAACTTTGATATTAAGTG
64 GAATGGAGAATAG-TATGAGAATCTATGTTTGTCTTATTT-AAGGACAAACTTTGAT-TT-A-TC
* * ** * * * *
2273749 AAATA-GG-GCAAAGAAAAGATTTCCATGCAA-AA
124 AAAAACGGCGGAAA-AAGTGCTTTTCTTGCAACAC
* * * * * * * * **
2273781 GAAATCATCAATATCAT-TAATCTTAATGAG-GAGAATGTGTTTATAGT-GCCTAATC-ACAAAT
1 CAAAGCACCAATATCATGT-ATCCTATTGAGAGAGACTATGTTTA-CGTGGCCTAATCTTGAAA-
* * * * * * * *
2273842 TGAATGAAG-ATCACTACT-AGAATTTATGTTTATCTCATTTGAGGCACAAACTTAGACTTTA-C
63 AGAATGGAGAAT-AGTA-TGAGAATCTATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTTATC
* * * *
2273904 AAAAATTGGTGGGAAAAA-AGCTTTTCTTGCGAA-AG
124 AAAAA-CGG-CGGAAAAAGTGCTTTTCTTGC-AACAC
* *
2273939 CAAAGCACCAATACCATGTATCCTCTTGAGAG-GACTATGTTTACGTGGCCTAATCTTGAAAAGA
1 CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTATGTTTACGTGGCCTAATCTTGAAAAGA
* * *
2274003 ATGGGGAATAGTATGAGTAT-TATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
66 ATGGAGAATAGTATGAGAATCTATGTTTGTCTTATTTAAG-GACAAACTTTGATT-TATCAAAAA
*
2274067 CGGCGGAAAAAGTGCTTTTCTTGCAACCC
129 CGGCGGAAAAAGTGCTTTTCTTGCAACAC
* * * * ** * *
2274096 CAAAGCACCAATGTCATGTATCTTAGTGA-AGAGA-AAGTGTTT-TTTGATCCCAATCTTGAAAA
1 CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTA-TGTTTACGTG-GCCTAATCTTGAAAA
* * * * **
2274158 GAATGGAG-ATTGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGATATTAAGT-
64 GAATGGAGAATAG-TATGAGAATCTATGTTTGTCTTATTTAA-GGACAAACTTTGAT-TT-A-TC
* ** * * * * *
2274221 AAAATAGGGCAAAGAAAAGAT-ATTTCCATGCAAAAG
124 AAAA-ACGGCGGA-AAAAG-TGCTTTTCTTGCAACAC
* * ** * * * * * * *
2274257 AAAATCATTAATATCAT-TAATCTTAATGAG-GAGAATGTGTTTATAGT-ACCTAATCAT-AAAA
1 CAAAGCACCAATATCATGT-ATCCTATTGAGAGAGACTATGTTTA-CGTGGCCTAATCTTGAAAA
* * * * * *
2274318 TGAATGAAGATTA--ATGCTAGAATCCATGTTTGGCTCATTTAAGG-CAAGAACTTAGACTTTA-
64 -GAATGGAGAATAGTATG--AGAATCTATGTTTGTCTTATTTAAGGAC-A-AACTTTGA-TTTAT
* * * *
2274379 CAAAAATTGGTGGGAAAAA-AGCTTTTCTTGCGAA-AG
123 CAAAAA-CGG-CGGAAAAAGTGCTTTTCTTGC-AACAC
* * *
2274415 AAAAGCACCAATACCATGTATCCTCTTGAGAG-GACTATGTTTACGTGGCCTAATCTTGAAAAGA
1 CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTATGTTTACGTGGCCTAATCTTGAAAAGA
* * *
2274479 ATGGGGAATAGTATGAGTAT-TATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAG
66 ATGGAGAATAGTATGAGAATCTATGTTTGTCTTATTTAAG-GACAAACTTTGATT-TATCAAAAA
*
2274543 CGGCGGAAAAAGTGCTTTTCTTGCAACCC
129 CGGCGGAAAAAGTGCTTTTCTTGCAACAC
* * * * ** * *
2274572 CAAAGCACCAATGTCATGTATCTTAATGA-AGAGA-AAGTGTTT-TTTGATCCCAATCTTGAAAA
1 CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTA-TGTTTACGTG-GCCTAATCTTGAAAA
* * * *
2274634 GAATGGAG-ATTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
64 GAATGGAGAATAG-TATGAGAATCTATGTTTGTCTTATTTAAGG
2274677 GATGAACTTT
Statistics
Matches: 776, Mismatches: 194, Indels: 170
0.68 0.17 0.15
Matches are distributed among these distances:
155 4 0.01
156 40 0.05
157 222 0.29
158 257 0.33
159 131 0.17
160 25 0.03
161 93 0.12
162 3 0.00
163 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (157 bp):
CAAAGCACCAATATCATGTATCCTATTGAGAGAGACTATGTTTACGTGGCCTAATCTTGAAAAGA
ATGGAGAATAGTATGAGAATCTATGTTTGTCTTATTTAAGGACAAACTTTGATTTATCAAAAACG
GCGGAAAAAGTGCTTTTCTTGCAACAC
Found at i:2277488 original size:387 final size:388
Alignment explanation
Indices: 2276733--2277494 Score: 953
Period size: 387 Copynumber: 2.0 Consensus size: 388
2276723 TTTGTCTCAT
* *
2276733 TTGAGGCACGAACTTAGACTTTACAAAAATTCATGGGAAAAAAAGCTTTTCTTGCGAAACCAAAG
1 TTGAGGCACGAACTTAGACTTTACAAAAATTCATAGGAAAAAAAGCTTTTCTTGCAAAACCAAAG
** * *
2276798 CACCAATAACGTGTATCTTAAAGAAAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGG
66 CACCAATAACGTGTATCTTAAAGAAAAGACTACATTTAAGGTGCCTAATCCTAAAAAGAATGGGG
** * * * *
2276863 AATAGTTTGAGAATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGACTCTTTTAAAAGTGGTGG
131 AATAGGATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGG
** * * *
2276928 AAAGAAAAGCTTTTCTTGTGATACGAAACCATCAATGTCATGCATCCTAAAGAAGAGAATGTGTT
196 AAAGAAAAGCTTTTCTTGCAACACGAAACCAACAATGTCATGCATCCTAAAGAAGAGAATGTGTC
*
2276993 TTTGGATCGTAATCTTGAAAAGAATGGAGTTTGCTACGAGAATCGATGCTTGTCTTATTTAAAGG
261 TTTGGATCGTAATCTTGAAAAGAATGGAGATTGCTACGAGAATCGATGCTTGTCTTATTTAAAGG
* ** * *
2277058 ATGAACTTTGATGTTAAGTAAAATAGGGCACAAACAAGATTTCCATGCAATAGAAAACCTTTC
326 ATGAACATTGATGTTAAGTAAAATACAGCACAAAAAAGATTTCCAGGCAATAGAAAACCTTTC
* ** * *
2277121 TTGAGGCACGAACTTAGACTTTGCAAAAATTGGTAGG-AAGAAAGCTTTTCTTGCAAAATCAAAG
1 TTGAGGCACGAACTTAGACTTTACAAAAATTCATAGGAAAAAAAGCTTTTCTTGCAAAACCAAAG
* * * * *
2277185 CATCAATATCGTGTATCCTT-ATGAGAAA-ACTACATTTATGGTGCCTAATCCTAAAAAGAATTG
66 CACCAATAACGTGTAT-CTTAAAGA-AAAGACTACATTTAAGGTGCCTAATCCTAAAAAGAATGG
* * * *
2277248 GGATTAGGATGAGTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTCTATCAAAAATGGT
129 GGAATAGGATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGT
* * * * * * *
2277313 GGATAGAAAAGCTTTTCTTGCAACACCG-AAGCAACAATGTCATGTATCCTAATGATGGGATTGT
194 GGAAAGAAAAGCTTTTCTTGCAACA-CGAAACCAACAATGTCATGCATCCTAAAGAAGAGAATGT
* * * * * *
2277377 GTCTTTGGTTC-TAAATCTTGAAAAGAATGGCGATTGTTATGAGAATGGATGCTTGTCTTTTTTA
258 GTCTTTGGATCGT-AATCTTGAAAAGAATGGAGATTGCTACGAGAATCGATGCTTGTCTTATTTA
* *
2277441 AGGGATGAACATTGATTTTAAAG-AAAATACAGCA-AAGAAAAGATTTCCAGGCAA
322 AAGGATGAACATTGATGTT-AAGTAAAATACAGCACAA-AAAAGATTTCCAGGCAA
2277495 AAAAAAATTA
Statistics
Matches: 316, Mismatches: 52, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
386 3 0.01
387 269 0.85
388 44 0.14
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (388 bp):
TTGAGGCACGAACTTAGACTTTACAAAAATTCATAGGAAAAAAAGCTTTTCTTGCAAAACCAAAG
CACCAATAACGTGTATCTTAAAGAAAAGACTACATTTAAGGTGCCTAATCCTAAAAAGAATGGGG
AATAGGATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGG
AAAGAAAAGCTTTTCTTGCAACACGAAACCAACAATGTCATGCATCCTAAAGAAGAGAATGTGTC
TTTGGATCGTAATCTTGAAAAGAATGGAGATTGCTACGAGAATCGATGCTTGTCTTATTTAAAGG
ATGAACATTGATGTTAAGTAAAATACAGCACAAAAAAGATTTCCAGGCAATAGAAAACCTTTC
Found at i:2278026 original size:475 final size:474
Alignment explanation
Indices: 2277128--2278431 Score: 1664
Period size: 475 Copynumber: 2.8 Consensus size: 474
2277118 TTCTTGAGGC
* * * *
2277128 ACGAACTTAGACTTTGCAAAAATTGGT-AGGAAGAAAGCTTTTCTTGC-AAAATCAAAGCATCAA
1 ACGAACTTAGACTTTACAAAAATTGGTGA-GAAAAAAGCTTTTCTTACGAAAA-CAAAGCACCAA
* ** * * * * *
2277191 TATCGTGTATCCTT-ATGAGAAAACTACATTTATGGTGCCTAATCCTAAAAAGAATTGGGATTAG
64 TATCGTGTAT-CTTAATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAATAGGGAATAG
* *
2277255 GATGAGTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTCTATCAAAAATGGTGGATAGA
128 TATGAGTATTCATGTTTGTCTTATTTAAGAGA-TAACTTTGATTCTATCAAAAATGGTGGAAAGA
* * * * * * *
2277320 AAAGCTTTTCTTGCAACACCG-AAGCAACAATGTCATGTATCCTAATGATGGGATTGTGTCTTTG
192 AAAGCTTTTCTTACGACA-CGAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * *
2277384 G-TTCTAAATCTTGAAAAGAATGGCGATTGTTATGAGAATGGATGCTTGTCTTTTTTAAGGGATG
256 GATTC-CAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATG
* * ** * *
2277448 AACATTGATTTTAAAG-AAAATACAGCAAAGAAAAGATTTCCAGGCAAAAAAAAATTATCCATAT
320 AACTTTGATATT-AAGTAAAATAGGGCAAAGAAAAGATTTCCAGGCAAAAAAAAATCATCAATAT
* *
2277512 CATTAATCTTAATAGGGAGAATTGTTTATAGTACCTAATCACAAAATGAATGAAGATCGTTACTA
384 CATTAATCTTAAAAGGGAGAATTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTA
* *
2277577 GAATCTATGTTTGTCTCATTTGAGAA
449 GAATCTATGTTTGTCACATTTAAGAA
* * *
2277603 ACGAA-TATAGACTTTATAAAAATTGGTGAGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAAT
1 ACGAACT-TAGACTTTACAAAAATTGGTGAGAAAAAAGCTTTTCTTACGAAAACAAAGCACCAAT
* * * * *
2277667 ATCGTGTATCTTAATGTGAAGACTATGTTTATGATGCCTAATGTTGCAAAGAGTGGGGAATAGTA
65 ATCGTGTATCTTAATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAATAGGGAATAGTA
*
2277732 TGAGTATTCATGTTTGTCTTATTCAAGAGATGAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
130 TGAGTATTCATGTTTGTCTTATTTAAGAGAT-AACTTTGATTCTATCAAAAATGGTGGAAAGAAA
* * **
2277797 TGCTTTTCTTCCGACACGAAAGCATCAATGTCATGTATCCTACCGAAGAGAATGTGTTTTTGGAT
194 AGCTTTTCTTACGACACGAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT
* * *
2277862 TCCAATCTTGAAAAGAATGGAGATTGCTACGAGAATCGATTCTTGTC-TATTTAAGGGATGAACT
259 TCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACT
* * *
2277926 TTGATATTAAGTAAAGTAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAATCATCAATATCATTA
324 TTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCAGGCAAAAAAAAATCATCAATATCATTA
* *
2277990 ATCTTAAACAAGGG-GAATGTGTTTATAGTGCCTAATCACAAATTGAATGAAGATCATTACTAGA
389 ATCTT-AA-AAGGGAGAAT-TGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGA
**
2278054 ATCTATGTTTGTCACATTTAAGGC
451 ATCTATGTTTGTCACATTTAAGAA
* * * *
2278078 ACGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCTTTTCTTATGAAAACAAAGCACCAATA
1 ACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCTTTTCTTACGAAAACAAAGCACCAATA
* * * *
2278143 TCGTGTATCCTATTGAGAAGACTATGTTTA-CATGGCCTAATCTTGAAAATAATAGGG-A-A-TA
66 TCGTGTATCTTAATGAGAAGACTATGTTTATGAT-GCCTAATCTTGAAAAGAATAGGGAATAGTA
* * * * *
2278204 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTGTCAAAAACGGTGAAAAGAAA
130 TGAGTATTCATGTTTGTCTTATTTAAGAGA-TAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
* * * *
2278269 AGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGCGTTTATGGAT
194 AGCTTTTCTTACGACACGAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT
* * * * *
2278334 CCCAATCTTGAAAAGAATAGAGATTGTTGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCT
259 TCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACT
2278399 TTGATATTAAGTAAAATAGGGCAAAGAAAAGAT
324 TTGATATTAAGTAAAATAGGGCAAAGAAAAGAT
2278432 GCGAGAATTG
Statistics
Matches: 720, Mismatches: 94, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
472 158 0.22
473 76 0.11
474 63 0.09
475 415 0.58
476 8 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
ACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCTTTTCTTACGAAAACAAAGCACCAATA
TCGTGTATCTTAATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAATAGGGAATAGTAT
GAGTATTCATGTTTGTCTTATTTAAGAGATAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
CTTTTCTTACGACACGAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATTC
CAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTT
GATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCAGGCAAAAAAAAATCATCAATATCATTAAT
CTTAAAAGGGAGAATTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCTA
TGTTTGTCACATTTAAGAA
Found at i:2278474 original size:70 final size:70
Alignment explanation
Indices: 2278361--2278571 Score: 422
Period size: 70 Copynumber: 3.0 Consensus size: 70
2278351 TAGAGATTGT
2278361 TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
1 TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
2278426 AAAGA
66 AAAGA
2278431 TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
1 TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
2278496 AAAGA
66 AAAGA
2278501 TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
1 TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
2278566 AAAGA
66 AAAGA
2278571 T
1 T
2278572 TTCCTTGTAG
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 141 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.32
Consensus pattern (70 bp):
TGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGACCTTTGATATTAAGTAAAATAGGGCAAAGA
AAAGA
Found at i:2278817 original size:17 final size:17
Alignment explanation
Indices: 2278795--2278828 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2278785 ATGGTGCCTA
2278795 ATCTTGAAAAGAATGGG
1 ATCTTGAAAAGAATGGG
2278812 ATCTTGAAAAGAATGGG
1 ATCTTGAAAAGAATGGG
2278829 GAATAGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.29, T:0.24
Consensus pattern (17 bp):
ATCTTGAAAAGAATGGG
Found at i:2283877 original size:18 final size:18
Alignment explanation
Indices: 2283854--2283961 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
2283844 ATCTTCTTCT
2283854 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
2283872 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
2283893 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
2283914 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
2283935 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
2283956 CTCCTC
1 CTCCTC
2283962 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:2283909 original size:42 final size:42
Alignment explanation
Indices: 2283857--2283975 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
2283847 TTCTTCTCTC
*
2283857 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2283899 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2283941 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2283976 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2283916 original size:12 final size:11
Alignment explanation
Indices: 2283890--2283965 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2283880 TCTATTATCT
*
2283890 CTCCTGTCTCTC
1 CTCCTATCTC-C
2283902 CTCCTATCATCC
1 CTCCTATC-TCC
2283914 CTCCTATCT--
1 CTCCTATCTCC
*
2283923 CTACTATCT--
1 CTCCTATCTCC
*
2283932 CTCCTGTCTCTC
1 CTCCTATCTC-C
2283944 CTCCTATCATCC
1 CTCCTATC-TCC
*
2283956 CTCCTCTCTC
1 CTCCTATCTC
2283966 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2286592 original size:159 final size:156
Alignment explanation
Indices: 2285879--2291590 Score: 1661
Period size: 159 Copynumber: 36.2 Consensus size: 156
2285869 CTAGACTTTG
* * * * *
2285879 CAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAA-GCAAAGCATCAATATCTTGTATGCTTAT
1 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACG-AAAGCATCAATATCATGTATCCTAAT
* *** * * ** * *
2285942 G-AGAAGACTACATTTATGGTGCGTAATCCCGAAAAGAAT-GAGAAATAGTATGAGTATTCATAT
63 GAAG-AGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAG-AATAATATGAG-ATTCATGT
* **
2286005 TTGGCTTATTTAAGAGTTAAACTTTGATTCTAT
125 TTGTCTTATTTAAGAGACAAACTTTGATT-TAT
* * * * *
2286038 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTATGTATCCTAATAA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * * *
2286103 AGAAAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGAAGCTTG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* * **
2286167 TCTTTTTTAAGGGATGAACTTTGA--TAT
128 TCTTATTTAAGAGACAAACTTTGATTTAT
* ** * * * ** * * * *
2286194 CAAGTAAAATAGG-GTAGCGAAAAGATTTCCATATAAAAGAAAATCATTAATATCATTTATCCTA
1 C-A--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTA
* * ** *
2286258 ATGAGGAGAATGTGTTTATAATGCCTAATC-ACAAAATGAATGAAGATTATCAATA-GA-A-TCT
61 ATGAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGA--AT-AATATGAGATTC-
* * **
2286319 ATGTTTGTCTCATTT--GAGGCATGAACTAAAGACTTTA-
121 ATGTTTGTCTTATTTAAGAGACA--AACT-TTGA-TTTAT
* * * * ** * **
2286356 CAACAATTGGTGGGAA-AAAAGCCTTTCTTATG-AATCCCAAGCACCAATATTGTGTATCCTAAT
1 CAA-AAATGGTGGAAAGAAAAGCTTTTC-T-TGCAAACGAAAGCATCAATATCATGTATCCTAAT
* * * * * *
2286419 G-AGAAGACTATGTTTACAGTGCCTAATCTTGAAAATAATGGGGAATAATATAAGTATTCATGTT
63 GAAG-AGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGTT
2286483 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
126 TGTCTTATTTAAGAGACAAACTTTGATT-TAT
* * *
2286515 CAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACACGAAAGCATCAATGTCATGTATCCTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACGAAAGCATCAATATCATGTATCCTAATGA
* * * ** * *
2286580 AGAGAATGTGTTTGT-G-GATCTCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTT
65 AGAGAATGTGTTTATAGTG-CCT-AATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTT
* * *
2286643 GTCTTATTTAAGGGATGAAA-TTTGATATTAA
127 GTCTTATTTAAGAGA-CAAACTTTGAT-TTAT
** * * * * **** * * * * * *
2286674 GTAAAATAGG-GCAAAGATAAGATTTCCACATAAAAGAAAATCATTAATATCATTTATTCTAGT-
1 CAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTAATG
* * ** * * *
2286737 AAGGAAAATGTGTTTATAGTGCCCAATC-AAAAAATGAATGAAG-ATCATTACT-AGAATCCATG
64 AA-GAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-AATA-TGAG-ATTCATG
* * *
2286799 TTTGACTTATTTGAG-GCACGAA-TTTAGACTTTA-
124 TTTGTCTTATTTAAGAG-ACAAACTTT-GA-TTTAT
* * * * * *
2286832 CAAAAATTGGTAGG-AA-AAAAGCCTTTCTTGCAAATCCAAAGC-TCCAATATCGTGTGTCTTGA
1 CAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCAAA-CGAAAGCAT-CAATATCATGTATCCTAA
* * * * * *
2286894 TG-AGAAGACTATGCTTA-AGGTGCCCAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATG
62 TGAAG-AGAATGTGTTTATA-GTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATG
* **
2286957 TTTGTCTTATTTAAGAGACAAACTTTGACTCTGC
124 TTTGTCTTATTTAAGAGACAAACTTTGA-TTTAT
* * * * **
2286991 CAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * ** * * *
2287056 AGAGAATGTGTTTTTGGAT-CCCAATCATGAAAAGAATTGAGATTATTACAAGAATCAATGCTGG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* *
2287120 TCTTATTTAAGGGATAAACTTTGATATTAAGT
128 TCTTATTTAAGAGACAAACTTTGAT-TT-A-T
* * * ** * * * * *
2287152 TAAATA-GG-GCAAAGAAAAAATTTCCATGCAAAAGAAACTCATCAATATCAT-TAATCTTAATG
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAACGAAA-GCATCAATATCATGT-ATCCTAATG
* * * * * * * *
2287214 AGGAGAATATGTTCATAGTG-TTGAATCAT-AGAATGAAT-GATG-ATCAATACT-AGGATCCAC
64 AAGAGAATGTGTTTATAGTGCCT-AATCTTGA-AAAGAATGGA-GAAT-AATA-TGA-GATTCAT
* * * * *
2287274 GTTTGGCTCATTTGAG-GCACGAACTTAGACTTTA-
123 GTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTTAT
* * * * * *
2287308 CAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCAGCAATGTCATGTATCCTTATG
1 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATG
* *** * *** * * * *
2287372 -AGAAAACTACATTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTT
64 AAGAGAA-TGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGTTT
2287436 GTCTTATTTAAGAGACAAACTTTGATTCTAT
127 GTCTTATTTAAGAGACAAACTTTGATT-TAT
* * * ** * *
2287467 CAAGAACGGTGAAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
* * ** * * * ** ** * *
2287532 AGAGAATGTGTTTTTGGAACCCAATCTTGAAAAGAATAGAGATTGTTACAATAATCGAT-TCTTG
65 AGAGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGT-TTG
* * * ** *
2287596 TCTTGTTGAAGGGATGAACTTTGATATTAG
128 TCTTATTTAAGAGACAAACTTTGAT-TTAT
** * * * * * * * *
2287626 GTAAGATAGG-GCAAAGAAATA-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
1 CAAAAAT-GGTGGAAAGAAA-AGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTAAT
* ** * * * *
2287689 GAGGAGAATGTGTTTATAGTGCCTAATC-AAAAAATGAGTGAAG-ATCATTACT-AGAATCCATG
63 GAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-AATA-TGAG-ATTCATG
* * *
2287751 TTTGTCTTATTTAAGAGACAAATTTTGACTCTGT
124 TTTGTCTTATTTAAGAGACAAACTTTGA-TTTAT
* * * * * * *
2287785 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCATCGTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * * *
2287850 ACG-GAATGTGTTTTTGGCT-CCCAATCTTGAAAATAGA-GGAGATTGTTACGAGAATTGATGCT
65 A-GAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGA-ATGGAGAATAATATGAG-ATTCATGTT
* * *
2287912 TGTCTT-TTTCAAGGGATAAGCTTTGATTTTAAGT
126 TGTCTTATTT-AAGAGACAAACTTTGA-TTT-A-T
* * * * * * * * * * *
2287946 -AAAAAAGG-GTAGAGAAAAGATTTCCATACAAAAGCAAATCATCAATATCATTTATCGTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTAATGA
* * * * * *
2288009 GGAGAATGTGTTTATAGTGCCTAATC--AAAAACGAGTGAAG-ATCATTACT-AGAATCCATGTT
65 AGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-AATA-TGAG-ATTCATGTT
* *
2288070 TGTCTTATTTAAGAGACAAACTTTGAGACTCTGT
126 TGTCTTATTTAAGAGACAAACTTT--GA-TTTAT
* * * **
2288104 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGA-CAATGTCATGTATTGTAATG
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACGAAAGC-ATCAATATCATGTATCCTAATG
* * * * * ** * * *
2288168 AAGGGAATGTGTTT-T-GGGCTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCT
64 AAGAGAATGTGTTTATAGTG--CCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTT
* * ** *
2288231 TATCTT-TTTCAAGGGATGAGCTTTGATTTTAAGT
126 TGTCTTATTT-AAGAGACAAACTTTGA-TTT-A-T
* * * * * * * * *
2288265 -AAAAAAGG-GTAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTAATGA
* * ** * * * * *
2288328 GGAGAATGTGTTTACAGTGCCTAATC-AAAAAATAAATGAAG-ATCATTTCTG-GAATCAATGTT
65 AGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-A-ATATGAGATTC-ATGTT
* * * * *
2288390 TGTCTTATTTGAAG-CACGATCTTAGACTTCA-
126 TGTCTTATTT-AAGAGACAAACTTTGA-TTTAT
* * **
2288421 CAAAAATTGGTGGGAAG-AAAGCTTTTCTTGCGAAACCAAAGCGCCAATATCATGTATCCTAATG
1 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATG
** * * * * *
2288485 -AGAAGTCTATGTTTACAGTGCCTAATCTTGAAAGGAATGGGGAATAGTATGAGTATTCATGTTT
64 AAG-AGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGTTT
2288549 GTCTTATTTTAAGAGACAAACTTTGATTTTAT
127 GTCTTA-TTTAAGAGACAAACTTTGA-TTTAT
** ** * ** * * * * *
2288581 CAAAAACAGCAGAAAGAAAAGCTTTTCTTGTGACCCGAAAGCATCACTGTCATGCATCCGAATAA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CAAACGAAAGCATCAATATCATGTATCCTAATGA
* * * * * * ** * *
2288646 AGAGATTGTGTTTTTGGAT-CCCAATCTTGAAAAGAATAGAGATTGCTATGAGAATCGATGCTTG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* * ** *
2288710 CCTTATTTAAGGGATGAACTTTGATATTAA
128 TCTTATTTAAGAGACAAACTTTGAT-TTAT
** * * * * * * *
2288740 GTAAAATAGG-GCATAGAAAA-CATTTCAATGCAATA-GAAAATCATCAAAATCATTTATCCTAA
1 CAAAAAT-GGTGGAAAGAAAAGCTTTTC-TTGCAA-ACG-AAAGCATCAATATCATGTATCCTAA
* * ** ** * *
2288802 TGAGGAGAATGTGTTTATAGTGCCTAAAC-ACAAAATGAATAAAG-ATCATCACT-AGAATCTAT
62 TGAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAATAAT-A-TGAGATTC-AT
* * *
2288864 TTTTGTCTTATTTGAG-GCACAAACTTAGACTTTA-
123 GTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTTAT
* * * * * *** ** *
2288898 CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGTGAATCCAAAGTGCCAATATTGTGTATCCTAACG
1 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTG-CAAACGAAAGCATCAATATCATGTATCCTAATG
* * ** * *
2288962 -AGAAGACTATACTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTT
64 AAG-AGAATGTGTTTATA-GTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGTT
*
2289025 TGTCTTATTTAAGAGGA-AAACTTTGATTCTCT
126 TGTCTTATTTAAGA-GACAAACTTTGATT-TAT
* * *
2289057 CAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACGAAAGCGTCAATGTCATGTATCCTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACGAAAGCATCAATATCATGTATCCTAATGA
* *** * * * ** * * **
2289122 AGAGAGTACATTT-TGGAT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATACTTG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
** *
2289185 TCTTATTTAA-AGGATGAACTTTGATATTAA
128 TCTTATTTAAGA-GACAAACTTTGAT-TTAT
** * * * * * *
2289215 GTAAAATAGG-GCACAA-AAAAGATTTCCATGCAATA-GAAAATCATCAATATCAT-TAATCATA
1 CAAAAAT-GGTGGA-AAGAAAAGCTTTTCTTGCAA-ACG-AAAGCATCAATATCATGT-ATCCTA
* ** * *
2289276 ATGAGGAGAATGTGTTTATAGTG-CTGAATC-ACAAAACAAATGAAG-ATCAATACT-AGACTTC
61 ATGAAGAGAATGTGTTTATAGTGCCT-AATCTTGAAAA-GAATGGAGAAT-AATA-TGAGA-TTC
* * ** * * *
2289337 ACGTTTGGCACATTT--GAGGCATGAACTTAGACTTTAC
121 ATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTTAT
* * * * * ** * *
2289374 CAAAATTGATAGG-AAG-AAAGCCTTTCTTGCAAAACCAAA-TATCAATATCATGTATTGTTACG
1 CAAAAATGGT-GGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATG
* *** * * * * * **
2289436 -AGAGGACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTCGTATTCATGTTT
64 AAGA-GAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGTTT
* *
2289500 GTCTTATTCAAGAGACAAACTTTGATTCTTT
127 GTCTTATTTAAGAGACAAACTTTGATT-TAT
** * * * *
2289531 CAAAACCGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAAT-AATGTCATGCATCCTGATG
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACGAAAGC-ATCAATATCATGTATCCTAATG
* * * * * * * ** * * * * *
2289595 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAATCAAAGCTTA
64 AAGAGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* * ** * *
2289660 TCTTTTTTAAGGGATGAACTTCGATATTAA
128 TCTTATTTAAGAGACAAACTTTGAT-TTAT
** * * * * * * * * * *
2289690 GTAAAATAGG-GCAATGAAAAGATTTCCATGTAAAAGAAAATCATTAATATCATTTATCCTAATG
1 CAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTAATG
* * ** * * *
2289754 ACGAGAATGTGTTTATAATGCCTAATC-ACAAAATGAATGAAG-ATCATCA-GTAGAATCTATGT
64 AAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAATAAT-ATG-AGATTC-ATGT
* * **
2289816 TTGTCTCATTT--GAGGCATGAACTAAGACTTTA-
125 TTGTCTTATTTAAGAGACA--AACTTTGA-TTTAT
* * * * *
2289848 CAACAATTGGTGGGAAA-AAAGGC-TTTCTTGTGAAAC-AAACGCACCAATATCGTGTATCCTAA
1 CAA-AAATGGT-GGAAAGAAAAGCTTTTCTTG-CAAACGAAA-GCATCAATATCATGTATCCTAA
* * * * * * *
2289910 TG-AGAAGACTATATTTA-AGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGGGTATTCATG
62 TGAAG-AGAATGTGTTTATA-GTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATG
*
2289973 ATTGTCTTATTTAAGAGACAAACTTTGATTCTAT
124 TTTGTCTTATTTAAGAGACAAACTTTGATT-TAT
* * *** * *
2290007 CAAAAACGGTGG-AA-AAAAGCTTTTCTTACGGCCCTAAAGCATCAATGTCATGTATCCTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * *
2290070 AGAG-ATGTGTTTTTGGAT-CCCAATCTTGAAAAGGATGGAGATTGTTATGAGAATCGATGCTTG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* **
2290133 TCTTATTTAAGGGATGAACTTTG--TTAT
128 TCTTATTTAAGAGACAAACTTTGATTTAT
* * * * * * * * *
2290160 TAAGTAAAGTAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCACTATCATTTATCCTA
1 CAA--AAA-T-GGTGGAAAGAAAAGCTTTTCTTGCAAACG-AAAGCATCAATATCATGTATCCTA
* ** * * *
2290224 ATGAGGAGAATGTGTTTATA--G-CTAATC-AAAAAATGAATGAAG-ATCATTACT-AGAATCCA
61 ATGAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-AATA-TGAG-ATTCA
* * * * **
2290283 TGTTTGTCTCATTTGAG-GCACGAACTTAGA-CCAT
122 TGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTAT
* * * *
2290317 ACAAAACTTGGTGGGAAG-AAAGCCTTTCTTGCGAAACAAAAGC-TACAATATCATGTATCCTAA
1 -CAAAA-ATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCAT-CAATATCATGTATCCTAA
* * * * ** *
2290380 TG-AGTAGACTATGTTTA-AGGTGCCTATTCTTGAAAAGAATGCAGAATTGTGTGAGTATTCATG
62 TGAAG-AGAATGTGTTTATA-GTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATG
2290443 TTTGTCTTATTTAAGAG----ACTTTGA---A-
124 TTTGTCTTATTTAAGAGACAAACTTTGATTTAT
* ** * ** * *
2290468 -AAAATTGGT-GAAA-AAAAGCCATTCTTGCGAAACCAAAATACCAATATCGTGTATCCTAAT--
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
** * * *
2290528 -GAGAA---GACTAT-GTTCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGT
65 AGAGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGTTTGT
*
2290588 CCTATTTAAGAGACAAACTTTGATTCTAT
129 CTTATTTAAGAGACAAACTTTGATT-TAT
* * *
2290617 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACGAAAGCATCAATGTCATGTATCCTATTGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAATGA
* * * * ** ** * **
2290682 AGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAACATTTG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* ** *
2290746 TCTTATTTAAGGGATGAACTTTGATATTAA
128 TCTTATTTAAGAGACAAACTTTGAT-TTAT
** * * * * * *
2290776 GTAAAATAGG-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
1 CAAAAAT-GGTGGAAAGAAAAGCTTTTC-TTGCAAACG-AAAGCATCAATATCATGTATCCTAAT
* *** * * * *
2290839 GAGGAGAATGTGTTTATAGTGCCTAATCAAAAAAATGAATGAAG-ATCATTACT-AGAATCCATA
63 GAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-AATA-TGAG-ATTCATG
* *
2290902 TTTGTCTTATTT--GAGGCATGAACTTCGACTTTA-
124 TTTGTCTTATTTAAGAGACA--AACTTTGA-TTTAT
* * * * * *
2290935 CAAAAATTGGTGGGAAG-AAAGCCTTTCTAGCGAAACAAAAGCACCAATATTATGTATCCTAATG
1 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCATCAATATCATGTATCCTAAT-
* * * * *
2290999 AGAAGACAAAGT-TTAAT-GTGCCTAATCTTCAAAAGAATGCG-GAATAGTATGAGCATTCATGT
63 -GAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATG-GAGAATAATATGAG-ATTCATGT
* *
2291061 TTGTCTTATTTAAGAGTCAAACATTGATTCTAT
125 TTGTCTTATTTAAGAGACAAACTTTGATT-TAT
* * * * **
2291094 CAAAAATGGTGAAAAGAAAGGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATTGTAATGA
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACGAAAGCATCAATATCATGTATCCTAATGA
* * * * ** * **
2291159 AGAGAATGTGTTTTTGGATTCC-AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATCCTTG
65 AGAGAATGTGTTTATAG-TGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTC-ATGTTTG
* **
2291223 TCTTATTTAAGGGATGAACTTTG--TTAT
128 TCTTATTTAAGAGACAAACTTTGATTTAT
* * * * * * * * *
2291250 TAAGTAAAGTAGG-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATACCATTTATCCC
1 CAA--AAA-T-GGTGGAAAGAAAAGCTTTTC-TTGCAAACG-AAAGCATCAATATCATGTATCCT
* ** * * *
2291313 AATGAGGAGAATGTGTTTATAGTGCCTAATC-AAAAAATGAATGAAG-ATCATTACT-AGAATCC
60 AATGAAGAGAATGTGTTTATAGTGCCTAATCTTGAAAA-GAATGGAGAAT-AATA-TGAG-ATTC
* * * **
2291375 ATGTTTGTATTATTT--GAGGCATGAACTTAGA-CCAT
121 ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTAT
* * * ** *
2291410 ACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACAAAAGC-TACAATATTGTGTATCCTAT
1 -CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACGAAAGCAT-CAATATCATGTATCCTAA
* * * * * * *
2291473 TGAAAATACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGTAGAATAGTATAAGTATTCATGT
62 TGAAGAGAATGTGTTTATA-GTGCCTAATCTTGAAAAGAATGGAGAATAATATGAG-ATTCATGT
2291537 TTGTCTTATTTAAGAGAC-AA-TTCT-A--TA-
125 TTGTCTTATTTAAGAGACAAACTT-TGATTTAT
2291564 -AAAAATGGTGGAAAG-AAAGCTTTTCTT
1 CAAAAATGGTGGAAAGAAAAGCTTTTCTT
2291591 ACGACACCAA
Statistics
Matches: 3965, Mismatches: 1191, Indels: 802
0.67 0.20 0.13
Matches are distributed among these distances:
140 54 0.01
141 3 0.00
144 10 0.00
145 1 0.00
147 42 0.01
148 6 0.00
149 4 0.00
150 8 0.00
151 24 0.01
152 43 0.01
153 5 0.00
154 10 0.00
155 62 0.02
156 141 0.04
157 199 0.05
158 991 0.25
159 1940 0.49
160 346 0.09
161 66 0.02
162 8 0.00
163 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAACGAAAGCATCAATATCATGTATCCTAATGAA
GAGAATGTGTTTATAGTGCCTAATCTTGAAAAGAATGGAGAATAATATGAGATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTTAT
Found at i:2287063 original size:476 final size:476
Alignment explanation
Indices: 2285870--2287762 Score: 2491
Period size: 476 Copynumber: 4.0 Consensus size: 476
2285860 AGATCAATAC
* * * * *
2285870 TAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA-GCAAAGCATCAATATCTTGT
1 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AAATCCAAAGCACCAATATCGTGT
* * * * *
2285934 ATGCTTATGAGAAGACTACATTTATGGTGCGTAATCCCGAAAAGAATGAGAAATAGTATGAGTAT
65 ATCCTTATGAGAAGACTACATTTAAGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTAT
* * ** * *
2285999 TCATATTTGGCTTATTTAAGAGTTAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
130 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTT
* * * *
2286064 CTTGCGATACCAAAGCATCAATGTTATGTATCCTAATAAAGAAAATGTGTTTTTGGATCCCAATC
195 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
** * * *
2286129 TTGAAAAGAATGGAGATTGTTATGAGAATCGAAGCTTGTCTTTTTTAAGGGATGAACTTTGATAT
260 TTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATAT
* * ** * * *
2286194 CAAGTAAAATAGGGTAGCGAAAAGATTTCCATATAAAAGAAAATCATTAATATCATTTATCCTAA
325 TAAGTAAAATAGGGCAAAGAAAAAATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * *
2286259 TGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATTATCAATAGAATCTATGTT
390 TGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
2286324 TGTCTCATTTGAGGCATGAACTA
455 TGTCTCATTTGAGGCACGAA-TT
* * *** * *
2286347 AAGACTTTACAACAATTGGTGGGAAAAAAGCCTTTCTTATGAATCCCAAGCACCAATATTGTGTA
1 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAATCCAAAGCACCAATATCGTGTA
* ** ** * * *
2286412 TCCTAATGAGAAGACTATGTTTACA-GTGCCTAATCTTGAAAATAATGGGGAATAATATAAGTAT
66 TCCTTATGAGAAGACTACATTTA-AGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTAT
* *
2286476 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT
130 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTT
* * * *
2286541 CTTGCAACACGAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTGTGGATCTCAATC
195 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
**
2286606 TTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATAT
260 TTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATAT
* * * * * * *
2286671 TAAGTAAAATAGGGCAAAGATAAGATTTCCACATAAAAGAAAATCATTAATATCATTTATTCTAG
325 TAAGTAAAATAGGGCAAAGAAAAAATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAA
* * *
2286736 TAAGGAAAATGTGTTTATAGTGCCCAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTT
390 TGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
2286801 TGACTTATTTGAGGCACGAATT
455 TGTCTCATTTGAGGCACGAATT
* * *
2286823 TAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAATCCAAAGCTCCAATATCGTGTG
1 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAATCCAAAGCACCAATATCGTGTA
*** * **
2286888 T-CTTGATGAGAAGACTATGCTTAAGGTGCCCAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
66 TCCTT-ATGAGAAGACTACATTTAAGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTAT
* **
2286952 TCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTGCCAAAAACGGTGAAAAGAAAAGCTTTT
130 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTT
*
2287017 CTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
195 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* * * * *
2287082 ATGAAAAGAATTGAGATTATTACAAGAATCAATGCTGGTCTTATTTAAGGGAT-AAACTTTGATA
260 TTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAAA-TTTGATA
* * * * *
2287146 TTAAGTTAAATAGGGCAAAGAAAAAATTTCCATGCAAAAGAAACTCATCAATATCATTAATCTTA
324 TTAAGTAAAATAGGGCAAAGAAAAAATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTA
* * * * * * * * *
2287211 ATGAGGAGAATATGTTCATAGTG-TTGAATCATAGAATGAATGATGATCAATACTAGGATCCACG
389 ATGAGGAGAATGTGTTTATAGTGCCT-AATCAAAAAATGAATGAAGATCATTACTAGAATCCATG
* *
2287275 TTTGGCTCATTTGAGGCACGAACT
453 TTTGTCTCATTTGAGGCACGAATT
* * * * *
2287299 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATGTCATGTA
1 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAATCCAAAGCACCAATATCGTGTA
* * * * *
2287364 TCCTTATGAGAAAACTACATTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTTTGAGTATT
66 TCCTTATGAGAAGACTACATTTAAGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTATT
*
2287429 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAGAACGGTGAAAAGAAAAGCTTTTC
131 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
* *
2287494 TTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAACCCAATCT
196 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * * * * *
2287559 TGAAAAGAATAGAGATTGTTACAATAATCGATTCTTGTCTTGTTGAAGGGATGAACTTTGATATT
261 TGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATATT
* * * *
2287624 AGGTAAGATAGGGCAAAGAAATAATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
326 AAGTAAAATAGGGCAAAGAAAAAATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAAT
*
2287689 GAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAGTGAAGATCATTACTAGAATCCATGTTT
391 GAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTT
*
2287754 GTCTTATTT
456 GTCTCATTT
2287763 AAGAGACAAA
Statistics
Matches: 1229, Mismatches: 178, Indels: 19
0.86 0.12 0.01
Matches are distributed among these distances:
475 6 0.00
476 809 0.66
477 414 0.34
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAATCCAAAGCACCAATATCGTGTA
TCCTTATGAGAAGACTACATTTAAGGTGCCTAATCCCGAAAAGAATGGGGAATAGTATGAGTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTC
TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
TGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATATT
AAGTAAAATAGGGCAAAGAAAAAATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAATT
Found at i:2289311 original size:475 final size:476
Alignment explanation
Indices: 2288064--2295819 Score: 7549
Period size: 475 Copynumber: 16.3 Consensus size: 476
2288054 TACTAGAATC
* *
2288064 CATGTTTGTCTTATTTAAGAGACAAACTTTGAGACTCTGTCAAAAACGGTGGAAAGAAAAGCTTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTT--GATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
* ** * * *
2288129 TCTTGCAACACCAAAGCGA-CAATGTCATGTATTGTAATGAAGGGAATGTGTTTTGGGCTCCCAA
64 TCTTGCGACACCAAAGC-ATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAA
* * *
2288193 TCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTATCTT-TTTCAAGGGATGAGCTTTGA
128 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATGAACTTTGA
* * * * *
2288257 TTTTAAGTAAAAAAGGGTAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
192 TATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCC
* * * * * *
2288322 TAATGAGGAGAATGTGTTTACAGTGCCTAATCAAAAAATAAATGAAGATCATTTCTGGAATCAAT
257 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
2288387 GTTTGTCTTATTTGAAGCACGATCTTAGACTTCACAAAAATTGGTGGGAAGAAAGCTTTTCTTGC
322 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC
* *
2288452 GAAACCAAAGCGCCAATATCATGTATCCTAATGAGAAGTCTATGTTTACA-GTGCCTAATCTTGA
387 GAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGA
*
2288516 AAGGAATGGGGAATAGTATGAGTATT
451 AAAGAATGGGGAATAGTATGAGTATT
* * **
2288542 CATGTTTGTCTTATTTTAAGAGACAAACTTTGATTTTATCAAAAACAGCAGAAAGAAAAGCTTTT
1 CATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * * *
2288607 CTTGTGAC-CCGAAAGCATCACTGTCATGCATCCGAATAAAGAGATTGTGTTTTTGGATCCCAAT
65 CTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT
* * * *
2288671 CTTGAAAAGAATAGAGATTGCTATGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATA
129 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATA
* * * * * *
2288736 TTAAGTAAAATAGGGCATAGAAAACATTTCAATGCAATAGAAAATCATCAAAATCATTTATCCTA
194 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTA
* * * * *
2288801 ATGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATGAATAAAGATCATCACTAGAATCTATTT
259 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
2288866 TTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGA
324 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
* ** ** * **
2288931 ATCCAAAGTGCCAATATTGTGTATCCTAACGAGAAGACTATACTTAAGGTGCCTAATCTTGAAAA
389 AACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAA
2288996 GAATGGGGAATAGTATGAGTATT
454 GAATGGGGAATAGTATGAGTATT
* *
2289019 CATGTTTGTCTTATTTAAGAGGA-AAACTTTGATTCTCTCAAAAATGGTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * **
2289083 CTTACAACACGAAAGCGTCAATGTCATGTATCCTAATGAAGAG-A-GTACATTTTGGATCCCAAT
65 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT-GTTTTTGGATCCCAAT
* *
2289146 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAAGGATGAACTTTGATA
129 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATA
* *
2289211 TTAAGTAAAATAGGGCACAA-AAAAGATTTCCATGCAATAGAAAATCATCAATATCATTAATCAT
194 TTAAGTAAAATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCT
** * * * *
2289275 AATGAGGAGAATGTGTTTATAGTG-CTGAATCACAAAACAAATGAAGATCAATACTAGACTTCAC
258 AATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
2289339 GTTTGGCACATTTGAGGCATGAACTTAGACTTTACCAAAATTGATAGGAAGAAAGCCTTTCTTGC
322 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC
* * * ** * * * ** * *
2289404 AAAACCAAA-TATCAATATCATGTATTGTTACGAGAGGACTACATTTATGGTGCCTAATCCTGAA
387 GAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAA
* **
2289468 AAGAATGGGGATTAGTATTCGTATT
452 AAGAATGGGGAATAGTATGAGTATT
* * *
2289493 CATGTTTGTCTTATTCAAGAGACAAACTTTGATTCTTTCAAAACCGGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
2289558 TTGCAACACCAAAGCAAT-AATGTCATGCATCCTGATGAAGGGAATGTGTTTTTGGTTCCCAATC
66 TTGCGACACCAAAGC-ATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* * * * * *
2289622 TTGAAAAGAATAGAGATTGTTACGAGAATCAAAGCTTATCTTTTTTAAGGGATGAACTTCGATAT
130 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT
* * * *
2289687 TAAGTAAAATAGGGCAATGAAAAGATTTCCATGTAAAAGAAAATCATTAATATCATTTATCCTAA
195 TAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAA
* * * * *
2289752 TGACGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATCAGTAGAATCTATGTT
260 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * *
2289817 TGTCTCATTTGAGGCATGAACTAAGACTTTACAACAATTGGTGGGAAAAAAGGCTTTCTTGTGAA
325 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
* * *
2289882 A-CAAACGCACCAATATCGTGTATCCTAATGAGAAGACTATATTTAAGGTGCCTAATCCTGAAAA
390 ACCAAA-GCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAA
*
2289946 GAATGGGGAATAGTATGGGTATT
454 GAATGGGGAATAGTATGAGTATT
*
2289969 CATGATTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AA-AAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* *
2290032 TTACGGC-CCTAAAGCATCAATGTCATGTATCCTAATGAAGAG-ATGTGTTTTTGGATCCCAATC
66 TTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* * *
2290095 TTGAAAAGGATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGTTAT
130 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT
* * *
2290160 TAAGTAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCACTATCATTTATCCTAA
195 TAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAA
*
2290225 TGAGGAGAATGTGTTTATA--G-CTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTT
260 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
** * *
2290287 TGTCTCATTTGAGGCACGAACTTAGACCATACAAAACTTGGTGGGAAGAAAGCCTTTCTTGCGAA
325 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
* * *
2290352 ACAAAAGCTA-CAATATCATGTATCCTAATGAGTAGACTATGTTTAAGGTGCCTATTCTTGAAAA
390 ACCAAAGC-ACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAA
** * *
2290416 GAATGCAGAATTGTGTGAGTATT
454 GAATGGGGAATAGTATGAGTATT
** **
2290439 CATGTTTGTCTTATTTAAGAG----ACTTTGA----A--AAAATTGGT-GAAA-AAAAGCCATTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* ** * * * * * *
2290492 TTGCGAAACCAAAATACCAATATCGTGTATCCTAATG-AGAAGACTATG----T---TCCTAATC
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-AGAATGTGTTTTTGGATCCCAATC
* * * * * * * **
2290549 TTGAAAAGAATGGGGAATAG-TATGAGTATTC-ATGTTTGTCCTATTTAAGAGACAAACTTTGAT
130 TTGAAAAGAATGGAG-ATTGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
*** * * * * * * * *
2290612 -TCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACG-AAAGCATCAATGTCATGT-A
193 AT-TAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCAT-TAA
* * * * * ** * ** *
2290673 TCCTATTGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGGAGATTGTTACAAGAA
254 TCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAA
* ** * * * * * * **
2290736 TCAACATTTGTCTTATTTAAGGGATGAACTTTGA-TATTA-AGTAAAATAGG-GCAAAGAAAAG-
317 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT-TTACA--AAAATTGGTGGGAA-AAAAGC
* * * ** * * * * * *
2290797 ATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA-GTGC
378 CTTTC-TTGCGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTA-AGGTGC
*** ** * * *
2290861 CTAATCAAAAAAATGAATGAAG-ATCATTACT-AGAATC
441 CTAATCTTGAAAA-GAATGGGGAAT-AGTA-TGAGTATT
* * * * * *
2290898 CATATTTGTCTTATTT--GAGGCATGAACTTCGACTT-TA-CAAAAATTGGTGGGAAG-AAAGCC
1 CATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAAGAAAAGCT
* * * * * * * * **
2290958 TTTCTAGCGAAACAAAAGCACCAATATTATGTATCCTAATGAGAAGACAAAGT-TTAAT-G-TGC
62 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT--GAAGAGAATGTGTTTTTGGAT-C
* * * * * * * *
2291020 CTAATCTTCAAAAGAATGCG-GAATAG-TATGAGCATTC-ATGTTTGTCTTATTTAAGAG-TCAA
124 CCAATCTTGAAAAGAATG-GAG-ATTGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGAT-GA
* *** * * * * * * ** * *
2291081 ACATTGAT-TCTATCAAAAAT-GGTGAAAAGAAAGGCTTTTCTTGCAACACCAAAGCATCAATGT
185 ACTTTGATAT-TAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
** * * * * ** * **
2291144 CATGT-ATTGTAATGAAGAGAATGTGTTTTTGGATTCC-AATCTTGAAAA-GAATGGAGATTGTT
248 CAT-TAATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCATT
* ** * * * * * * * * **
2291206 A-TGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTG-TTATTA-AGTAAAGTAGG-GCAA
310 ACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT-TTACA--AAAATTGGTGGGA
* * * ** * * * * * * * *
2291267 AGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATACCATTTATCCCAATGAGGAGAATGTGTTT
371 A-AAAAGCCTTTC-TTGCGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTT
** ** * * *
2291331 ATA-GTGCCTAATC-AAAAAATGAATGAAG-ATCATTACT-AGAATC
434 A-AGGTGCCTAATCTTGAAAA-GAATGGGGAAT-AGTA-TGAGTATT
* * * * * * *
2291374 CATGTTTGTATTATTT--GAGGCATGAACTTAGA--CCATACAAAAATTGGTGGGAAG-AAAGCC
1 CATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTAT-CAAAAA-CGGTGGAAAGAAAAGCT
* * * * ** * * * * * **
2291434 TTTCTTGCAAAACAAAAGC-TACAATATTGTGTATCCTATTGAAAATACTATGTTTAAGG-TGCC
62 TTTCTTGCGACACCAAAGCAT-CAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CC
* * * * * * *
2291497 TAATCTTGAAAAGAATGTAGAATAGTATA--AGTATTC-ATGTTTGTCTTATTTAAGAGA-CAA-
125 CAATCTTGAAAAGAATGGAG-ATTGT-TACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * * * * * ** * * * *
2291557 -TT-CTA-TAA--AAAAT-GGTGGAAAG-AAAGCTTTTCTTACGACACCAAAGCATTAATGTTAT
187 TTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* ** * * ** * * *
2291615 TGATGATTTTCTTTTGCATGGA-AATCT-TTTCTTTTCCCTATTATC-CTTAAAT-AAGGCAAGC
251 T-A--A--TCCTAATG-A-GGAGAATGTGTTTATAGTGCCTA--ATCAC-AAAATGAATG-AAG-
* * ** ** * ** *
2291676 ATCATTCTCGTAACAATCTCCAACCTTT-TCAAGATTGGGATCCAAAAAC-ACATCTCTTTATTA
304 ATCATT-AC-T-AGAA--TCC-ATGTTTGTC-TCATT-TGAGGC----ACGA-A---C-TTA-GA
* * ** *
2291739 ATCTTA-AGACACGAACTTAGACT-TTACAAAAATTG-GTGGAAAAAAGCCATTCTTGCGAAACC
351 CT-TTACA-A-A--AA-TT-G-GTGGGA-AAAAA--GCCT------------TTCTTGCGAAACC
** * *
2291801 AAAATACCAATATCGTGTATCCTAATGAGAAGACTTTGTTTAAGGTGCCTAATCTTGAAAAGAAT
393 AAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAAT
2291866 GGGGAATAGTATGAGTATT
458 GGGGAATAGTATGAGTATT
* * * *
2291885 CATGTTTGTCCTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGAAAAGAAAAGCTTTTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
2291950 TTGCGACACGAAAGTATCAATGTCATGTATCATAACGAAGAGAATGTGTTTTTTGATCCCAATCT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * *
2292015 TGAAAAGAATGGAGATTGTTGCAAGAATCGACGCTTGTCTTATTTAAGGGATGAACTTTGATATT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* * * * *
2292080 ATGTAAAATAGGCCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTATT
196 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
*
2292145 GAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTT
261 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
2292210 GTCTTATTTGAGGAACGAACTTCGACTTTAC-AAAATTAGTGGGAAAAAAGCCTTTCTAGTGAAA
326 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * * *
2292274 CAAAAGCACCAATATCGTGCATCCTAATGAGAAGACAAAGTTTAA-GTGCCTAATCTTGAAAAGA
391 CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
*
2292338 ATGCGGAATAGTATGAGTATT
456 ATGGGGAATAGTATGAGTATT
2292359 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
2292424 TTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGCTTTTGGATCTCAATCT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * * * * * * *
2292489 TGAAAAGAATGGGGACTGTTTCAAGAATCAATGCTGGCCTTATTTAAGGGATGAACTTTGATTTT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* * * *
2292554 AAGGAAAATAGGGCAAAGAAAAGATCTT-CATGCAAAAGAAATTCATCAATGTCATTAATCTTAA
196 AAGTAAAATAGGGCAAAGAAAAGAT-TTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAA
* * **
2292618 TGAGGAGATTGTGTTTATAGTGCC-GATCACAAAATGAATGAAGATCAACACTAGAATCCATGTT
260 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * ** * * *
2292682 TGGCTCATTTGAGGCACAAACTTAGACCATACGAAAATTGGTGGGAAGAAAGCCATTCTTGCGAA
325 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
* * *
2292747 ACAAAATCACCAATATCATGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAG
390 ACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAG
**
2292812 AATGTAGAATAGTATGAGTATT
455 AATGGGGAATAGTATGAGTATT
2292834 CATGTTTGTCTTATTTAAGAG--AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
2292897 TTGCGACACCAAAGCATCAATGTCATGTATTCTAATAAAGAGAATGTGTTTTTGGATCTCAATCT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* ** * * * *
2292962 TGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGGATGAACTTTGATTTT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* *
2293027 AAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
196 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
* * *
2293091 GAGGAGATTGTGTTTATGGTGCC-AATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTT
261 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* ** * *
2293155 GGCTCATTTGAGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAA
326 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * *
2293220 CAAAAGCACCAATATCGTGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
391 CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
** *
2293285 ATGCAGAATAGTATGTGTATT
456 ATGGGGAATAGTATGAGTATT
2293306 CATGTTTGTCTTATTTAAGAG--AAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
** * * **
2293368 TTATGACACCAAAGCATCAAGGTCTTGTATCCTAATGAAG-TTATGTGTTTTTGGATCCCAATCT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * * * * * *
2293432 TGAAAAGGATGGAGATTGTTATGAGAATCGATGCCTATCATATTTAGGGGATGAACTTTGATTTT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* * *
2293497 AAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAAG
196 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
* * * *
2293562 GAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATACTAGAATCC-TCATT
261 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT-GTT
* * *
2293626 TGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGAGAA
325 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA
* * *
2293691 ACCAAAGCACTC-ATATCGTGTATCCTGATGAGAAGACTCTGTTTAA-GTGCCTAATCTTGAAAA
390 ACCAAAGCAC-CAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAA
* *
2293754 GAATGAGAAATAGTATGAGTATT
454 GAATGGGGAATAGTATGAGTATT
* * * * * * *
2293777 TATATTTGTCTTTTTTAGGAGACAAACTTTGATTCTTTCAAAAATGGTAGAAAGAAAAGCTTTT-
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
*
2293841 TGTGCGACACCAAAGCACCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
66 T-TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
* * * *
2293906 TTTAAAAGAATGGAGATTGTTACGAGAATCTATGCTTGTCTTATTTGAGGGAGGAACTTTGATAT
130 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT
* * *
2293971 TAAGTAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAA
195 TAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAA
* *
2294036 TGAGGAGAATGTGTTTATAGTGCC-ATATCAAAAAATGAATGAAGATCATTGCTAGAATCCATGT
260 TGAGGAGAATGTGTTTATAGTGCCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * * * * *
2294100 TTGTGTCATTCGAGGTACGAACTTGGAATTTACAAAAATTAGTTGGAAGAAAGCCTTTGTTGCGA
324 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
* * * * * * *
2294165 AACAAAAGCGCCTATATCATTTATCCTAATGAGTAGACAATGTTTAGGGTGCCTAATCTTGAAAA
389 AACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAA
*
2294230 GAATGTGGAATAGTATGAGTATT
454 GAATGGGGAATAGTATGAGTATT
* * * *
2294253 CATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAACAGTGGAAA-AAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * *
2294317 TTGTGGCACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTTTGGATCCCAATTT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * *
2294382 TGAAAAGAATGGAGATTGTTACTAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* * * * *
2294447 AAGGAATATAGGGCAAAGTAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCTAAT
196 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
** * * * * * *
2294512 GAGGAGAATGCATTTATTGTGCCTAATAACAAAATAAATGAATATCAATACTGGAATCCAT-TTT
261 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
2294576 GGCTCATTTGAGGCTCGAAC-T----TTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAA
326 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * ** * *
2294636 CTAAAGCACCCATATTGTGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCTTGAAAAGA
391 CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
*
2294701 ATGTGGAATAGTATGAGTATT
456 ATGGGGAATAGTATGAGTATT
* * * * * *
2294722 CATATTTGTCTTTTTTAAGAGACAAACTTTGATTCTTTCAAAAATGGTAGAAAGAAAACCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
2294787 TTGCGACACCAAAGCACCAATGTCAAGTATCCTAATAAAGAGAATGTGTTTTTGGATCCCAATCT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* *
2294852 TTAAAAGAATGGAGATTGTTACGAGAATCTATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* * * * * * * * *
2294917 ATGTAAAATAGTGCAAAGAAAAGATTTCTAAGCAAAATAAAATCATCACTAACATTAATCATAAA
196 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
* * * *
2294982 GAGTAGAATTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTT
261 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
2295047 GGCTCATTTGAGGCATGAATTTAGACTTTACGAAAGTTGGTGGGAAGAAAGCCTTTCTTGTGAAA
326 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * ** * *
2295112 CCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATGGTGCCTAATCCTGAAAAGA
391 CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
*
2295177 ATGGGGAATAGTATGAGTATA
456 ATGGGGAATAGTATGAGTATT
* *
2295198 CACGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * *
2295263 TTGTGACACCAAAGCATCAATGTCATGTATTCTAAT-AAGAGAATGTGTTTTTGGAT-CCAATCC
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* * * * * * *
2295326 TGAAAAGGATGGGGATTGTTTCAAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTAATTTT
131 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
* ** *
2295391 AAGAAAAATAGGG-AAAGAAAAGATTTTTATGCAAAAGAAAATCATCAATATCATTAATCTTAAT
196 AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
** *
2295455 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAAGACTAGAATACATGTTT
261 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
2295520 GGCTCATTTAAAGCATGAACTTAGACCTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAA
326 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * *
2295585 CCAAAGCACCAATATCATGCATCCTAATGAGTAGACTATGTTTAAGGTGCCTGATCTTGAAAGGA
391 CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
*
2295650 ATGGGGAATAGTATGGGTATT
456 ATGGGGAATAGTATGAGTATT
* * * *
2295671 CATGTTTGTCTTATTTAAGAGATAATCTTTGATTCTCTCAAAAATGGTGGAAAGAAAAGCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * * *
2295736 CTGCAACACGAAAGCATTAATGTCATGCATCCTAATAAAGAGAATGTGTTTTTGGATCCCAATCT
66 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
* *
2295801 TGAAAAGAGTGGACATTGT
131 TGAAAAGAATGGAGATTGT
2295820 GATGAAAACC
Statistics
Matches: 6173, Mismatches: 903, Indels: 407
0.82 0.12 0.05
Matches are distributed among these distances:
453 3 0.00
454 110 0.02
455 10 0.00
456 1 0.00
457 62 0.01
458 71 0.01
459 31 0.01
460 47 0.01
461 5 0.00
462 1 0.00
463 6 0.00
466 7 0.00
467 2 0.00
468 35 0.01
469 173 0.03
470 556 0.09
471 184 0.03
472 439 0.07
473 781 0.13
474 738 0.12
475 1152 0.19
476 655 0.11
477 685 0.11
478 21 0.00
479 21 0.00
481 4 0.00
482 7 0.00
483 1 0.00
486 2 0.00
487 3 0.00
488 6 0.00
489 1 0.00
490 3 0.00
491 4 0.00
492 1 0.00
493 7 0.00
494 1 0.00
495 4 0.00
496 3 0.00
497 3 0.00
498 6 0.00
499 1 0.00
500 2 0.00
501 3 0.00
502 1 0.00
505 2 0.00
506 7 0.00
507 5 0.00
509 3 0.00
510 4 0.00
511 97 0.02
512 105 0.02
513 26 0.00
514 8 0.00
515 17 0.00
516 2 0.00
517 3 0.00
519 9 0.00
520 26 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCT
TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT
AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT
GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
ATGGGGAATAGTATGAGTATT
Found at i:2290513 original size:147 final size:139
Alignment explanation
Indices: 2290335--2290601 Score: 356
Period size: 140 Copynumber: 1.9 Consensus size: 139
2290325 TGGTGGGAAG
* *
2290335 AAAGCCTTTCTTGCGAAACAAAAGCTACAATATCATGTATCCTAATGAGTAGACTATGTTTAAGG
1 AAAGCCATTCTTGCGAAACAAAA-CTACAATATCATGTATCCTAATGAGAAGACTATG--T----
* * * *
2290400 TGCCTATTCTTGAAAAGAATGCAGAATTGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACTTT
59 T-CCTAATCTTGAAAAGAATGCAGAATAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACTTT
2290465 GAAAAAATTGGTGAAAA
123 GAAAAAATTGGTGAAAA
*
2290482 AAAGCCATTCTTGCGAAACCAAAA-TACCAATATCGTGTATCCTAATGAGAAGACTATGTTCCTA
1 AAAGCCATTCTTGCGAAA-CAAAACTA-CAATATCATGTATCCTAATGAGAAGACTATGTTCCTA
**
2290546 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCCTATTTAAGAGAC
64 ATCTTGAAAAGAATGCAGAATAGTATGAGTATTCATGTTTGTCCTATTTAAGAGAC
2290602 AAACTTTGAT
Statistics
Matches: 109, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
140 54 0.50
141 1 0.01
145 1 0.01
146 2 0.02
147 46 0.42
148 5 0.05
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (139 bp):
AAAGCCATTCTTGCGAAACAAAACTACAATATCATGTATCCTAATGAGAAGACTATGTTCCTAAT
CTTGAAAAGAATGCAGAATAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACTTTGAAAAAAT
TGGTGAAAA
Found at i:2292534 original size:159 final size:157
Alignment explanation
Indices: 2291788--2295813 Score: 647
Period size: 159 Copynumber: 25.5 Consensus size: 157
2291778 AAAAAAGCCA
** * * * * * * *
2291788 TTCTTGCGAAACCAAAATACCAATATCGTGTATCCTAATG-AGAAGACTTTGTTTAAGGTGCCTA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-A
* * * * *
2291852 ATCTTGAAAAGAATGGGGAATAGTAT-GAGTATTC-ATGTTTGTCC-TATTTAAGAGACAAACTT
64 ATCTTGAAAAGAATGGAG-AT-GTATCAAG-AATCAATG-CTGGCCTTATTTAAGAGACAAACTT
* *
2291914 TGATTCCATCAAAAACGGTGAAAAGAAAAGCTT
125 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * * *
2291947 TTTTTGCGACACGAAAGTATCAATGTCATGTA-TCATAACGAAGAGAATGTGTTTTTTGATCCCA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTC-TAATGAAGAGAATGTG-TTTATGGTGCCA
* * * * * **
2292011 ATCTTGAAAAGAATGGAGATTGT-TGCAAGAATCGACGCTTGTCTTATTTAAGGGATGAACTTTG
64 ATCTTGAAAAGAATGGAGA-TGTAT-CAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTG
* ** *
2292075 ATAT-TATGTAAAATA-GG-CCAAAGAAAAG-AT
127 AT-TCTAT-CAAAA-ACGGTGGAAAGAAAAGCTT
* * ** * * * * * * *
2292105 TTCAATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTA
1 TTC-TTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGGTGCC-A
** * * * * * * * * *
2292170 ATC-AAAAAATGAATGAAGAT-CATTACTAGAATCCATGTTTGTCTTATTTGAG-GAACGAACTT
64 ATCTTGAAAA-GAATGGAGATGTA-T-CAAGAATCAATGCTGGCCTTATTTAAGAG-ACAAACTT
* *** * *
2292232 CGACTT-TA-CAAAATTAGTGGGAA-AAAAGCCT
125 TGA-TTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * * * ** *
2292263 TTCTAGTGAAACAAAAGCACCAATATCGTGCATCCTAATG-AGAAGACA-AAGTTTA-AGTGCCT
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGA-ATGTGTTTATGGTGCC-
* * * * *
2292325 AATCTTGAAAAGAATGCG-GAATAGTAT-GAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACT
63 AATCTTGAAAAGAATG-GAG-AT-GTATCAAG-AATCAATGCTGGCCTTATTTAAGAGACAAACT
2292387 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
124 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
*
2292421 TTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGCTTT-TGGAT-CTC
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTG-TTTATGG-TGC-C
* * * **
2292484 AATCTTGAAAAGAATGGGGACTGTTTCAAGAATCAATGCTGGCCTTATTTAAGGGATGAACTTTG
63 AATCTTGAAAAGAATGGAGA-TGTATCAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTG
* ** * * *
2292549 ATTTTAAGGAAAATA-GG-GCAAAGAAAAGATC
127 ATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCTT
* ** * * * * * *
2292580 TTCATGC-AAAAGAAATTCATCAATGTCAT-TAATCTTAATGAGGAGATTGTGTTTATAGTGCCG
1 TTCTTGCGAAACCAAA-GCATCAATGTCATGTATTC-TAATGAAGAGAATGTGTTTATGGTGCCA
** * * * * * * *
2292643 ATC-ACAAAATGAATGAAGAT-CAACACTAGAATCCATGTTTGG-CTCATTTGAG-GCACAAACT
64 ATCTTGAAAA-GAATGGAGATGTATCA--AGAATCAATG-CTGGCCTTATTTAAGAG-ACAAACT
* * ** * **
2292704 TAGA--CCATACGAAAATTGGTGGGAAG-AAAGCCA
124 TTGATTCTAT-C-AAAAACGGTGGAAAGAAAAGCTT
* * * * * * * * *
2292737 TTCTTGCGAAACAAAATCACCAATATCATGCATCCTAATG-AGAAGACTATGTTTAAGGTGCCTA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-A
* * * * * *
2292801 ATCTTGAAAAGAATGTAGAATAGTAT-GAGTATTC-ATGTTTGTCTTATTTAAGAG--AAACTTT
64 ATCTTGAAAAGAATGGAG-AT-GTATCAAG-AATCAATGCTGGCCTTATTTAAGAGACAAACTTT
2292862 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
126 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * *
2292894 TTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATAAAGAGAATGTGTTTTTGGAT-CTCA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGC-CA
* * ** * **
2292958 ATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGGATGAACTTTGA
64 ATCTTGAAAAGAATGGAGA-TGTATCAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTGA
* ** * *
2293023 TTTTAAGGAAAATA-GG-GCAAAGAAAAG-AT
128 TTCT-ATCAAAA-ACGGTGGAAAGAAAAGCTT
* * ** * * * * *
2293052 TTCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGATTGTGTTTATGGTGCCAA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTC-TAATGAAGAGAATGTGTTTATGGTGCCAA
** * ** * * * * * * *
2293116 TC-ACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGG-CTCATTTGAG-GCACGAACTTA
65 TCTTGAAAA-GAATGGAGATGTAT-CAAGAATCAATG-CTGGCCTTATTTAAGAG-ACAAACTTT
* * * **
2293178 GA--CCATACAAAAATTGGTGGGAAG-AAAGCCA
126 GATTCTAT-CAAAAA-CGGTGGAAAGAAAAGCTT
* * * * * * * * *
2293209 TTCTTGCGAAACAAAAGCACCAATATCGTGCATCCTAATG-AGAAGACTATGTTTAAGGTGCCTA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-A
* ** * * * *
2293273 ATCTTGAAAAGAATGCAGAATAGTAT-GTGTATTC-ATGTTTGTCTTATTTAAGAG--AAACTTT
64 ATCTTGAAAAGAATGGAG-AT-GTATCAAG-AATCAATGCTGGCCTTATTTAAGAGACAAACTTT
2293334 GATTCTATCAAAAACGGTGGAAAG-AAAGCTT
126 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
** * * * * ** * *
2293365 TTCTTATGACACCAAAGCATCAAGGTCTTGTATCCTAATGAAG-TTATGTGTTTTTGGATCCCAA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGCCAA
* * * ** * * * **
2293429 TCTTGAAAAGGATGGAGATTGTTAT-GAGAATCGATGCCT-ATCATATTTAGGGGATGAACTTTG
65 TCTTGAAAAGAATGGAGA-TG-TATCAAGAATCAATG-CTGGCCTTATTTAAGAGACAAACTTTG
* ** * * *
2293492 ATTTTAAGAAAAATAGG-GCAAAGAAAAGATT
127 ATTCTATCAAAAA-CGGTGGAAAGAAAAGCTT
* * * ** * * * * * * *
2293523 TCCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAAGGAGGAGATTGTGTTTATAGTGCCTA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTC-TAATGAAGAGAATGTGTTTATGGTGCC-A
** * * ** * * * * * *
2293587 ATC-ACAAAATGAAAGAAGATCAATACTAGAATCCTCAT-TTGG-CTCATTTGAG-GCACGAACT
64 ATCTTGAAAA-GAATGGAGATGTAT-CAAGAAT-C-AATGCTGGCCTTATTTAAGAG-ACAAACT
* * *
2293648 TAGACTT-TA-CAAAAATTGGTAGG-AA-AAAAGCCT
124 TTGA-TTCTATCAAAAA-CGGT-GGAAAGAAAAGCTT
* * * * * * * *
2293681 TTCTTGAGAAACCAAAGCACTC-ATATCGTGTATCCTGATG-AGAAGACTCTGTTTA-AGTGCCT
1 TTCTTGCGAAACCAAAGCA-TCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-
* * * ** ** * * * *
2293743 AATCTTGAAAAGAATGAGAAATAGTAT-GAGTATTTATATTTGTCTTTTTTAGGAGACAAACTTT
63 AATCTTGAAAAGAATG-GAGAT-GTATCAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTT
* * *
2293807 GATTCTTTCAAAAATGGTAGAAAGAAAAGCTT
126 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * *
2293839 TT-TGTGCGACACCAAAGCACCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCA
1 TTCT-TGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGCCA
* * * * * * * **
2293903 ATCTTTAAAAGAATGGAGATTGT-TACGAGAATCTATGCTTGTCTTATTTGAGGGAGGAACTTTG
64 ATCTTGAAAAGAATGGAGA-TGTAT-CAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTG
* * *
2293967 ATAT-TAAGT-AAAATA-AG-GCAAAGAAAAGATT
127 AT-TCT-A-TCAAAA-ACGGTGGAAAGAAAAGCTT
* ** * ** * * * * * *
2293998 TCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCATA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGGTGCCA-A
** * * * * * * ** * ** * *
2294063 TC-AAAAAATGAATGAAGAT-CATTGCTAGAATCCATGTTTGTGTCATTCGAG-GTACGAACTTG
65 TCTTGAAAA-GAATGGAGATGTA-T-CAAGAATCAATGCTGGCCTTATTTAAGAG-ACAAACTTT
* * *
2294125 GAATT-TA-CAAAAATTAGTTGG-AAG-AAAGCCT
126 G-ATTCTATCAAAAA--CGGTGGAAAGAAAAGCTT
* * ** * * * * * *
2294156 TTGTTGCGAAACAAAAGCGCCTATATCATTTATCCTAATG-AGTAGACA-ATGTTTAGGGTGCCT
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGA-ATGTGTTTATGGTGCC-
* * * * *
2294219 AATCTTGAAAAGAATGTG-GAATAGTAT-GAGTATTCATAT--TTGTCTTATTTAAAAGACAAAC
63 AATCTTGAAAAGAATG-GAG-AT-GTATCAAG-AATCA-ATGCTGGCCTTATTTAAGAGACAAAC
* *
2294280 TTTGATTCTATAAAAAACAGTGGAAA-AAAAGCTT
123 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* ** * * * * * *
2294314 TTCTTGTGGCACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTTTGGATCCCAA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGCCAA
* * ** * * * **
2294379 TTTTGAAAAGAATGGAGATTGT-TACTAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGA
65 TCTTGAAAAGAATGGAGA-TGTAT-CAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTGA
* ** * * * *
2294443 TTTTAAGGAATATA-GG-GCAAAGTAAAGATT
128 TTCT-ATCAA-AAACGGTGGAAAGAAAAGCTT
* * * ** * ** * * * ** *
2294473 TCCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGGAGAATGCATTTATTGTGCCTAA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGGTGCC-AA
*** * * * ** ** * ** * * * *
2294538 T-AACAAAATAAATGAATATCAATACTGGAATCCATTTTGG-CTCATTTGAG-GCTCGAAC--T-
65 TCTTGAAAA-GAATGGAGATGTAT-CAAGAATCAATGCTGGCCTTATTTAAGAG-ACAAACTTTG
* * *
2294597 -TT-TA-CAAAAATTGGTGGGAA-AAAAGCCT
127 ATTCTATCAAAAA-CGGTGGAAAGAAAAGCTT
* * * * * ** * ** *
2294625 TTCTTGAGAAACTAAAGCACCCATATTGTGTATCCTAATG-AGAAGGCTATGTTTATGGTGCCTA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-A
* * * * *
2294689 ATCTTGAAAAGAATGTG-GAATAGTAT-GAGTATTCATAT--TTGTCTTTTTTAAGAGACAAACT
64 ATCTTGAAAAGAATG-GAG-AT-GTATCAAG-AATCA-ATGCTGGCCTTATTTAAGAGACAAACT
* * * *
2294750 TTGATTCTTTCAAAAATGGTAGAAAGAAAACCTT
124 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * *
2294784 TTCTTGCGACACCAAAGCACCAATGTCAAGTATCCTAATAAAGAGAATGTGTTTTTGGATCCCAA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGCCAA
* * * * * * **
2294849 TCTTTAAAAGAATGGAGATTGT-TACGAGAATCTATGCTTGTCTTATTTAAGGGATGAACTTTGA
65 TCTTGAAAAGAATGGAGA-TGTAT-CAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTGA
** ** * *
2294913 TAT-TATGTAAAATAGTGCAAAGAAAAG-AT
128 T-TCTATCAAAAACGGTGGAAAGAAAAGCTT
* * ** * * ** * * * *
2294942 TTCTAAGCAAAATAAAATCATCACTAACAT-TAATCATAAAG-AGTAGAATTTGTTTATAGTGCC
1 TTCT-TGCGAAACCAAAGCATCAATGTCATGTATTC-TAATGAAG-AGAATGTGTTTATGGTGCC
** * ** * * * * * *
2295005 TAATC-ACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGG-CTCATTT--GAGGCATGAA
63 -AATCTTGAAAA-GAATGGAGATGTAT-CAAGAATCAATG-CTGGCCTTATTTAAGAGACA--AA
*** * *
2295066 -TTTAGACTT-TA-CGAAAGTTGGTGGGAAG-AAAGCCT
122 CTTT-GA-TTCTATC-AAAAACGGTGGAAAGAAAAGCTT
* * * * * * ***
2295101 TTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTACATTTATGGTGCCTA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-A
* * * * * * * * *
2295165 ATCCTGAAAAGAATGGGGAATAGTAT-GAGTAT-ACACGTTTGTCTTATTTAAGAGATAAACTTT
64 ATCTTGAAAAGAATGGAG-AT-GTATCAAGAATCA-ATGCTGGCCTTATTTAAGAGACAAACTTT
2295228 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
126 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * *
2295260 TTCTTGTGACACCAAAGCATCAATGTCATGTATTCTAAT-AAGAGAATGTGTTTTTGGAT-CCAA
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGCCAA
* * * * * * * ** *
2295323 TCCTGAAAAGGATGGGGATTGTTTCAAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTAAT
65 TCTTGAAAAGAATGGAGA-TGTATCAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTGAT
* ** ** *
2295388 TTTAAGAAAAATAG-GGAAAGAAAAGATT
129 TCTATCAAAAACGGTGGAAAGAAAAGCTT
* ** * * * * *
2295416 TT-TATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATAGTGCCT
1 TTCT-TGCGAAACCAAAGCATCAATGTCATGTATTC-TAATGAAGAGAATGTGTTTATGGTGCC-
** * ** * * * *
2295479 AATC-ACAAAATGAATGAAGATCAAGACTAGAAT-ACATGTTTGG-CTCATTTAA-AG-CATGAA
63 AATCTTGAAAA-GAATGGAGATGTA-TCAAGAATCA-ATG-CTGGCCTTATTTAAGAGACA--AA
* * * * *
2295539 CTTAGA-CCT-TACAAAAATTGGTGGGAA-AAAAGCCT
122 CTTTGATTCTAT-CAAAAA-CGGTGGAAAGAAAAGCTT
* * * * * * * * *
2295574 TTCTTGCAAAACCAAAGCACCAATATCATGCATCCTAATG-AGTAGACTATGTTTAAGGTGCCTG
1 TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-A
* * ** * * * * * *
2295638 ATCTTGAAAGGAATGGGGAATAGTAT-GGGTATTC-ATGTTTGTCTTATTTAAGAGATAATCTTT
64 ATCTTGAAAAGAATGGAG-AT-GTATCAAG-AATCAATGCTGGCCTTATTTAAGAGACAAACTTT
* *
2295701 GATTCTCTCAAAAATGGTGGAAAGAAAAGCTT
126 GATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * * *
2295733 TTCCTGC-AACACGAAAGCATTAATGTCATGCATCCTAATAAAGAGAATGTGTTTTTGGATCCCA
1 TTCTTGCGAA-ACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGCCA
*
2295797 ATCTTGAAAAGAGTGGA
64 ATCTTGAAAAGAATGGA
2295814 CATTGTGATG
Statistics
Matches: 2756, Mismatches: 826, Indels: 570
0.66 0.20 0.14
Matches are distributed among these distances:
150 2 0.00
151 3 0.00
152 59 0.02
153 24 0.01
154 14 0.01
155 59 0.02
156 200 0.07
157 506 0.18
158 853 0.31
159 947 0.34
160 80 0.03
161 9 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (157 bp):
TTCTTGCGAAACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTATGGTGCCAAT
CTTGAAAAGAATGGAGATGTATCAAGAATCAATGCTGGCCTTATTTAAGAGACAAACTTTGATTC
TATCAAAAACGGTGGAAAGAAAAGCTT
Found at i:2297463 original size:12 final size:11
Alignment explanation
Indices: 2297441--2297516 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2297431 AGAGAAAGAA
*
2297441 GAGAGAGGAGG
1 GAGATAGGAGG
2297452 GATGATAGGAGG
1 GA-GATAGGAGG
*
2297464 AGAGACAGGA--
1 -GAGATAGGAGG
*
2297474 GAGATAGTA--
1 GAGATAGGAGG
2297483 GAGATAGGAGG
1 GAGATAGGAGG
2297494 GATGATAGGAGG
1 GA-GATAGGAGG
*
2297506 AGAGACAGGAG
1 -GAGATAGGAG
2297517 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2297473 original size:24 final size:24
Alignment explanation
Indices: 2297440--2297525 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2297430 AAGAGAAAGA
*
2297440 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2297464 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2297482 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2297506 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2297526 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2297492 original size:42 final size:42
Alignment explanation
Indices: 2297431--2297549 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2297421 TAGCCCTCAA
* *
2297431 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2297473 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2297515 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2297550 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2303643 original size:474 final size:475
Alignment explanation
Indices: 2302732--2304888 Score: 2909
Period size: 474 Copynumber: 4.5 Consensus size: 475
2302722 CGAACTTGTG
* * * *
2302732 AAACCAGAGCACCAACATCGTGTATCCTGATGAGAAAACTATGTTTACAGTGCCTAATCTTGAAA
1 AAACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAA
* *
2302797 AGAATGGGGAATAATATGAGGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
66 AGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * *
2302862 AAACGGTAGAAAGAAAAGCTTTTCTTGCGACACGAAGGCATCGATGTCATTTATCCTAATGAAGA
131 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA
** *
2302927 GAATGTGTTTTTGGATCCCCTTCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTT
196 GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCCTT
* * *
2302992 ATTTAAGGGATGAACTTTGATATTAAGAAAAATAGGGCAAAGACAAGATTTCCATGCAAAAAAAA
261 ATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * *
2303057 ATCATCAATATCATTTATCATAATCAGAAGAATTTGTTTATAGTGCCTAATCACAAAATGAAAGA
326 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
2303122 AGATCAATACTAGAATCCACGTTTGGCTCAATTGAGGTACAAACTTAGACTTTACAAAAATTGGT
391 AGATCAATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
*
2303187 -CGAAAAAA-CCTTTCTTGC
456 GGGAAAAAAGCCTTTCTTGC
* * * *
2303205 AAGACCAAAGCACCAACATCGTCTATCATAATAAGAAGACTATGTTTACGGAT-CCTACTCTTGA
1 AA-ACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTATGTTTACGG-TGCCTAATCTTGA
* *
2303269 AAAGAATGGGGAATATTATGAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATC
64 AAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * * * *
2303334 CAAAACGGTAGAAAGAAAGGCTTTCCTTGCTATACCAAAGCATCAATGTCATGTATTCTAATGAA
129 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
** * * **
2303399 GAGAATGCATTTTTGGATCCCAATTTTGAAAAGGATGGAGATTGTTATGAGAATTGATGCTTGCC
194 GAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCC
* * *
2303464 ATATTTAAGGGATGAACTTTGATTTTAAGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
259 TTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * **
2303529 AAATCCTTAATACCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
324 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * **
2303594 GAAGATCAATGCCAGAATCCATGTTCGGCTCA-TTGAAGGGATGAACTTAGACCATACAAAAATT
389 GAAGATCAATACCAGAATCCATGTTTGGCTCATTTG-AGGCACGAACTTAGACTTTACAAAAATT
2303658 GGTGGGAAAAAAGCCTTTCTTGC
453 GGTGGGAAAAAAGCCTTTCTTGC
* * ** * *
2303681 AAAACCAAAGCTCCAATATCAAGTATCCTAATGAAAAGACTATG-TTAAGGTGCCTAATCTTGAA
1 -AAACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAA
* *
2303745 AAGAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTTATTCTATCA
65 AAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
2303810 AAAACGATGGAAAGAAAAGCTTTTCTTGCGGCACCAAAGCATTAATGTCAAGCATCCTAACGAAG
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* * ** * *
2303875 AGAAAGTGTTTTTGGATTCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAATTCTTG-TT
195 AGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCCT
* ** * * * *
2303939 TTTTTCGGGGATGAACTTTGATTTTTAA-GAAAATACGGCAAAGAAAAGATTTCCAAGAAAAAGA
260 TATTTAAGGGATGAACTTTGA-TATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * *
2304003 AAATCATCCATATCACTAATCTTAATGATGAGAATGTGTTTATAATGCCTAATCACAAAATGAAT
324 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * **
2304068 GAACATCATTACTAGAATCTATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATT
389 GAAGATCAATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTAC-AAAAATT
2304133 GGTGGGAAAAAAGCCTTTCCTGTG-
453 GGTGGGAAAAAAGCCTTT-CT-TGC
* * *
2304157 AAACCAAAGCACCAACATCGTCTATCATAATGAGAAGACTATGTTTACGGAGCCTAATCTTGAAA
1 AAACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAA
* *
2304222 AGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATGAA
66 AGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * *
2304287 AAACGGTGGAAAGAAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATTTATCCTAATGAAGA
131 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA
* * *
2304352 GAATGTGTTTTTAGATCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCAATGCTTGTCTT
196 GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCCTT
** * *
2304417 ATTTAAGAAATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
261 ATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
2304482 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGA
326 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * *
2304547 AAATCATTACTCA-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGG
391 AGATCAATAC-CAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* *
2304611 TGGAAAAAAAGCCTTTCTTGTG
455 TGGGAAAAAAGCCTTTCTTG-C
** * *
2304633 AAA-CAAACGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAA
1 AAACCAAA-GCACCAACATCGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAA
* *
2304697 AAGAATGGGGAATAGTATGGGTATTCATGATTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
65 AAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
2304762 AAAATGGTGGAAAG-AAAGCTTTTCTTACGGC-CCTAAAGCATCAATGTCATGTATCCTAATGAA
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAA
* * *
2304825 GAG-ATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTCTGAGAATCGATGCTTGCC
194 GAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCC
2304889 ATAAATAAGG
Statistics
Matches: 1464, Mismatches: 200, Indels: 39
0.86 0.12 0.02
Matches are distributed among these distances:
473 5 0.00
474 597 0.41
475 309 0.21
476 392 0.27
477 160 0.11
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (475 bp):
AAACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAA
AGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA
GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGCCTT
ATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCAATACCAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAAAAAGCCTTTCTTGC
Found at i:2304316 original size:159 final size:158
Alignment explanation
Indices: 2302726--2304864 Score: 730
Period size: 159 Copynumber: 13.5 Consensus size: 158
2302716 GACGCACGAA
* * * * * * * *
2302726 CTTGTGAAACCAGAGCACCAACATCGTGTATCCTGATGAGAA-AACTATGTTTACAGTGCCTAAT
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGAA-TATGTTTATAGAGCCTAAT
* * *
2302790 CTTGAAAAGAATGGGGAATAATATGAGGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
65 CTTGAAAAGAATGGAGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
2302855 CTATCAAAAACGGTAGAAAGAAAAGCTTTT
130 -TATGAAAAATGGTGGAAAGAAAAGCTTTT
* * * * * * * * * * ***
2302885 CTTGCGACACGAAGGCATCGATGTCATTTATCCTAATGA-AGAGAATGTGTTTTTGGATCCCCTT
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGA-AGAATATGTTTATAGAGCCTAAT
* * * * **
2302949 CTTGAAAAGAATGGAG-ATTGTTATGAG-AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGA
65 CTTGAAAAGAATGGAGAATAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * *
2303012 TATTAAGAAAAATAGG-GCAAAGACAAGATTTC
128 T-TTATGAAAAAT-GGTGGAAAGAAAAGCTTTT
* ** ** * * * * *
2303044 CATGCAAAAAAAAATCATCAATATCATTTATCATAATCAGAAGAATTTGTTTATAGTGCCTAATC
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGAGCCTAATC
** * * * * * * * * * * *
2303109 -ACAAAATGAAAGAAG-ATCAATACT-AGAATCCACGTTTGGCTCAATTGAG-GTACAAACTTAG
66 TTGAAAA-GAATGGAGAAT-AGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTG
* * *
2303170 ACTTTA-CAAAAATTGGTCG-AA-AAAA-CCTTT
127 A-TTTATGAAAAA-TGGTGGAAAGAAAAGCTTTT
* * * * * * * * ** * *
2303200 CTTG-CAAGACCAAAGCACCAACATCGTCTATCATAATAAGAAGACTATGTTTACGGATCCTACT
1 CTTGTGAA-ACCAAAGCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGAGCCTAAT
* * *
2303264 CTTGAAAAGAATGGGGAATATTATGAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATT
65 CTTGAAAAGAATGGAGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** * * * *
2303329 CTATCCAAAACGGTAGAAAGAAAGGCTTTC
130 -TATGAAAAATGGTGGAAAGAAAAGCTTTT
* * * * * * *
2303359 CTTGCT-ATACCAAAGCATCAATGTCATGTATTCTAATGA-AGAGAATGCAT-TTT-TGGATCCC
1 CTTG-TGAAACCAAAGCATCAATATCATTTATCCTAATGAGA-AGAAT--ATGTTTATAGAGCCT
* * * * * * * * * **
2303420 AATTTTGAAAAGGATGGAG-ATTGTTATGAGAATTGATGCTTGCCATATTTAAGGGATGAACTTT
62 AATCTTGAAAAGAATGGAGAATAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* ** * * *
2303484 GATTTTAAGGGAAATAGG-GCAAAGAAAAGATTTC
126 GA-TTTATGAAAAAT-GGTGGAAAGAAAAGCTTTT
* ** ** * * * * ** * * *
2303518 CATGCAAAAGAAAATCCTTAATACCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATC
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGAGCCTAATC
** * * * * * * * * ** *
2303583 -ACAAAATGAATGAAG-ATCA--ATGCCAGAATCCATGTTCGGCTCATTGAAGGGATGAACTTAG
66 TTGAAAA-GAATGGAGAAT-AGTATG--AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
** * * *
2303644 A-CCATACAAAAATTGGTGGGAA-AAAAGCCTTT
127 ATTTAT-GAAAAA-TGGTGGAAAGAAAAGCTTTT
** ** * * *
2303676 CTTGCAAAACCAAAGC-TCCAATATCAAGTATCCTAATGAAAAGACTATG-TTA-AGGTGCCTAA
1 CTTGTGAAACCAAAGCAT-CAATATCATTTATCCTAATGAGAAGAATATGTTTATA-GAGCCTAA
* * *
2303738 TCTTGAAAAGAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTTAT
64 TCTTGAAAAGAATGGAGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
2303803 TCTATCAAAAACGATGGAAAGAAAAGCTTTT
129 T-TATGAAAAATGGTGGAAAGAAAAGCTTTT
* ** * * *** * * * *
2303834 CTTGCGGCACCAAAGCATTAATGTCAAGCATCCTAACGA-AGAGAA-AGTGTTTTTGGATTCC-A
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGA-AGAATA-TGTTTATAGA-GCCTA
* ** * * ** * **
2303896 ATCTTGAAAAGAATGGAG-ATTGTTACAAG-AATCAAT-TCTTGT-TTTTTTCGGGGATGAACTT
63 ATCTTGAAAAGAATGGAGAATAG-TATGAGTATTC-ATGT-TTGTCTTATTTAAGAGACAAACTT
* * * * * *
2303957 TGATTTTTAAGAAAATACG-GCAAAGAAAAGATTTC
125 TGATTTATGA-AAAAT-GGTGGAAAGAAAAGCTTTT
** ** ** * * * * * *
2303992 CAAGAAAAAGAAAATCATCCATATCACTAATCTTAATGATG-AGAATGTGTTTATA-ATGCCTAA
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGA-GAAGAATATGTTTATAGA-GCCTAA
** * * * * * *
2304055 TC-ACAAAATGAAT-GA-ACATCATTACT-AG-AATCTATGTTTTTCTCATTTGAG-GCACGAAC
64 TCTTGAAAA-GAATGGAGA-AT-AGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAAC
* ** * *
2304114 TTAGACTTTACAAAAAATTGGTGGGAA-AAAAGCCTTT
123 TTTGA-TTTATGAAAAA-TGGTGGAAAGAAAAGCTTTT
* * * * * * * **
2304151 CCTGTGAAACCAAAGCACCAACATCGTCTATCATAATGAGAAGACTATGTTTACGGAGCCTAATC
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGAGCCTAATC
* *
2304216 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTC
66 TTGAAAAGAATGGAGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-
*
2304281 TATGAAAAACGGTGGAAAGAAAAGCTTTT
130 TATGAAAAATGGTGGAAAGAAAAGCTTTT
* * * * * * *
2304310 CTTGTGACACGAAAGCATCAATGTCATTTATCCTAATGA-AGAGAATGTGTTTTTAGATCCCAAT
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGA-AGAATATGTTTATAGAGCCTAAT
* * * * * **
2304374 CTTGAAAAGAATGGAG-ATTGTTATAAG-AATCAATGCTTGTCTTATTTAAGAAATGAACTTTGA
65 CTTGAAAAGAATGGAGAATAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
2304437 TATTAAGTAAAATAGG-GCAAAGAAAAGATTTT
128 T-TTATGAAAAAT-GGTGGAAAGAAAAGCTTTT
* ** ** * * * *
2304469 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
1 CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGAGCCTAATC
** * * * * * * * * *
2304534 -AAAAAATGAAT-GAAAATCATTACTCA-AATCCATGTTTGTCTCATTTGAG-GCACGAACTTAG
66 TTGAAAA-GAATGGAGAAT-AGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTG
* *
2304595 ACTTTA-AAAAAATTGGTGGAAA-AAAAGCCTTT
127 A-TTTATGAAAAA-TGGTGGAAAGAAAAGCTTTT
* * * * *
2304627 CTTGTGAAA-CAAACGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAA
1 CTTGTGAAACCAAA-GCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATA-GAGCCTAA
* * *
2304690 TCTTGAAAAGAATGGGGAATAGTATGGGTATTCATGATTGTCTTATTTAAGAGACAAACTTTGAT
64 TCTTGAAAAGAATGGAGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
*
2304755 TCTATCAAAAATGGTGGAAAG-AAAGCTTTT
129 T-TATGAAAAATGGTGGAAAGAAAAGCTTTT
** ** * * * * * * *
2304785 CTTACG-GCCCTAAAGCATCAATGTCATGTATCCTAAT--GAAGAGATGTGTTTTTGGATCCCAA
1 CTTGTGAAACC-AAAGCATCAATATCATTTATCCTAATGAGAAGA-ATATGTTTATAGAGCCTAA
*
2304847 TCTTGAAAAGGATGGAGA
64 TCTTGAAAAGAATGGAGA
2304865 TTGTTCTGAG
Statistics
Matches: 1414, Mismatches: 449, Indels: 236
0.67 0.21 0.11
Matches are distributed among these distances:
155 5 0.00
156 94 0.07
157 124 0.09
158 395 0.28
159 744 0.53
160 49 0.03
161 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
CTTGTGAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGAGCCTAATC
TTGAAAAGAATGGAGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT
ATGAAAAATGGTGGAAAGAAAAGCTTTT
Found at i:2304621 original size:951 final size:950
Alignment explanation
Indices: 2302753--2304886 Score: 3019
Period size: 951 Copynumber: 2.2 Consensus size: 950
2302743 CCAACATCGT
* *
2302753 GTATCCTGATGAGAAA-ACTATGTTTACA-GTGCCTAATCTTGAAAAGAATGGGGAATAATATGA
1 GTATCCTAATGA-AAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATG-
*
2302816 GG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAG
63 GGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * *
2302880 CTTTTCTTGCGACACGAAGGCATCGATGTCATTTATCCTAATGAAGAGAATGTGTTTTTGGATCC
128 CTTTTCTTGCGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCC
** **
2302945 CCTTCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTT
193 CAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTT
* * * * *
2303010 GATATTAAGAAAAATAGGGCAAAGACAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTAT
258 GATATTAAGAAAAATACGGCAAAGAAAAGATTTCCAAGCAAAAAAAAATCATCAATATCACTAAT
* * *
2303075 CATAATCAGAAGAATTTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATACTAGAATCC
323 CATAATCAGAAGAATGTGTTTATAATGCCTAATCACAAAATGAAAGAACATCAATACTAGAATCC
*
2303140 ACGTTTGGCTCAATTGAGGTACAAACTTAGACTTTACAAAAATTGGTCGAAAAAACCTTTCTTGC
388 ACGTTTGGCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGGTCGAAAAAACCTTTCTTGC
* *
2303205 AAGACCAAAGCACCAACATCGTCTATCATAATAAGAAGACTATGTTTACGGATCCTACTCTTGAA
453 AAGACCAAAGCACCAACATCGTCTATCATAATAAGAAGACTATGTTTACGGAGCCTAATCTTGAA
* * *
2303270 AAGAATGGGGAATATTATGAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCC
518 AAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
2303335 AAAACGGTAGAAAGAAAGGCTTTCCTTGCTATACCAAAGCATCAATGTCATGTATTCTAATGAAG
583 AAAACGGTAGAAAGAAAAGCTTTCCTTGCTACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* * * * **
2303400 AGAATGCATTTTTGGATCCCAATTTTGAAAAGGATGGAGATTGTTATGAGAATTGATGCTTGCCA
648 AGAATGCATTTTTAGATCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCAATGCTTGCCA
** * *
2303465 TATTTAAGGGATGAACTTTGATTTTAAGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
713 TATTTAAGAAATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
2303530 AATCCTTAATACCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
778 AATCATCAATACCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATG
* * * * *
2303595 AAGATCAATGCCAGAATCCATGTTCGGCTCATTGAAGGGATGAACTTAGACCATACAAAAATTGG
843 AAAATCAATACCAGAATCCATGTTCGGCTCATTGAAGGCACGAACTTAGACCATAAAAAAATTGG
*
2303660 TGGGAAAAAAGCCTTTCTTGCAAAACCAAA-GC-TCCAATATCAA
908 TGGAAAAAAAGCCTTTCTTGCAAAA-CAAACGCAT-CAATATCAA
2303703 GTATCCTAATGAAAAGACTATG-TTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGT
1 GTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGT
* *
2303767 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACGATGGAAAGAAAAGCTT
66 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * *
2303832 TTCTTGCGGCACCAAAGCATTAATGTCAAGCATCCTAACGAAGAGAAAGTGTTTTTGGATTCCAA
131 TTCTTGCGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAA
* * **
2303897 TCTTGAAAAGAATGGAGATTGTTACAAGAATCAATTCTTGT-TTTTTTCGGGGATGAACTTTGAT
196 TCTTGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGA-
* *
2303961 TTTTAAG-AAAATACGGCAAAGAAAAGATTTCCAAG-AAAAAGAAAATCATCCATATCACTAATC
260 TATTAAGAAAAATACGGCAAAGAAAAGATTTCCAAGCAAAAA-AAAATCATCAATATCACTAATC
* * * * *
2304024 TTAATGATG-AGAATGTGTTTATAATGCCTAATCACAAAATGAATGAACATCATTACTAGAATCT
324 ATAATCA-GAAGAATGTGTTTATAATGCCTAATCACAAAATGAAAGAACATCAATACTAGAATCC
* ** * * *
2304088 ATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATTGGTGGGAAAAAAGCCTTTCC
388 ACGTTTGGCTCAATTGAGGCACAAACTTAGACTTTAC-AAAAATTGGT-CGAAAAAA-CCTTT-C
*
2304153 TGTG-AA-ACCAAAGCACCAACATCGTCTATCATAATGAGAAGACTATGTTTACGGAGCCTAATC
449 T-TGCAAGACCAAAGCACCAACATCGTCTATCATAATAAGAAGACTATGTTTACGGAGCCTAATC
*
2304216 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTC
513 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
2304281 TATGAAAAACGGTGGAAAGAAAAGCTTTTCTTG-TGACACGAAAGCATCAATGTCATTTATCCTA
578 TATCAAAAACGGTAGAAAGAAAAGCTTTCCTTGCT-ACACCAAAGCATCAATGTCATGTATCCTA
**
2304345 ATGAAGAGAATGTGTTTTTAGATCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCAATGC
642 ATGAAGAGAATGCATTTTTAGATCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCAATGC
* * * *
2304410 TTGTCTTATTTAAGAAATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTTCATGCA
707 TTGCCATATTTAAGAAATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* **
2304475 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAA
772 AAAGAAAATCATCAATACCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCAAAAAA
* * * **
2304540 TGAATGAAAATCATTACTCA-AATCCATGTTTGTCTCATTTG-AGGCACGAACTTAGACTTTAAA
837 TGAATGAAAATCAATAC-CAGAATCCATGTTCGGCTCA-TTGAAGGCACGAACTTAGACCATAAA
** * **
2304603 AAAATTGGTGGAAAAAAAGCCTTTCTTGTGAAACAAACGCATTAATATCGT
900 AAAATTGGTGGAAAAAAAGCCTTTCTTGCAAAACAAACGCATCAATATCAA
*
2304654 GTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGT
1 GTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGT
* *
2304719 ATTCATGATTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAGCTT
66 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
*
2304783 TTCTTACGGC-CCTAAAGCATCAATGTCATGTATCCTAATGAAGAG-ATGTGTTTTTGGATCCCA
131 TTCTTGCGGCACC-AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCA
* * *
2304846 ATCTTGAAAAGGATGGAGATTGTT-CTGAGAATCGATGCTTG
195 ATCTTGAAAAGAATGGAGATTGTTAC-AAGAATCAATGCTTG
2304887 CCATAAATAA
Statistics
Matches: 1050, Mismatches: 115, Indels: 38
0.87 0.10 0.03
Matches are distributed among these distances:
947 5 0.00
948 151 0.14
949 209 0.20
950 82 0.08
951 496 0.47
952 105 0.10
953 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (950 bp):
GTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGCGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAA
TCTTGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGAT
ATTAAGAAAAATACGGCAAAGAAAAGATTTCCAAGCAAAAAAAAATCATCAATATCACTAATCAT
AATCAGAAGAATGTGTTTATAATGCCTAATCACAAAATGAAAGAACATCAATACTAGAATCCACG
TTTGGCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGGTCGAAAAAACCTTTCTTGCAAG
ACCAAAGCACCAACATCGTCTATCATAATAAGAAGACTATGTTTACGGAGCCTAATCTTGAAAAG
AATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
ACGGTAGAAAGAAAAGCTTTCCTTGCTACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGA
ATGCATTTTTAGATCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCAATGCTTGCCATAT
TTAAGAAATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
CATCAATACCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAA
ATCAATACCAGAATCCATGTTCGGCTCATTGAAGGCACGAACTTAGACCATAAAAAAATTGGTGG
AAAAAAAGCCTTTCTTGCAAAACAAACGCATCAATATCAA
Found at i:2305200 original size:159 final size:156
Alignment explanation
Indices: 2305001--2305680 Score: 431
Period size: 159 Copynumber: 4.3 Consensus size: 156
2304991 AAAAAAGCCA
* * ** *
2305001 TTCTTGCAAAACCAAAATACCAATATCATGTATCCTAATGAGAAAACTATGTTTAAGGTGCCTAA
1 TTCTTGCGAAACGAAAGCACCAATATCATGTATCCTAATGAGAGAA-TATGTTTAAGGTGCCTAA
* *
2305066 TCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGAT
65 TCTTGAAAAGAATGGAG-ATAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
*
2305131 TCTATCAAAAACGGTGGAAAGAAAAGCTT
128 TATATCAAAAACGGTGGAAAGAAAAGCTT
* * * ** *
2305160 TTCTTGCGACACGAAAGCACCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCA
1 TTCTTGCGAAACGAAAGCACCAATATCATGTATCCTAATG-AGAGAATATGTTTAAGG-TGCCTA
* * * * * ** *
2305224 ATCTTGAAAATAATGGAGATTGT-TGCAAGAATCAATGCTTGTCTTATTTAAGGGATGAACTGTG
64 ATCTTGAAAAGAATGGAGATAGTATG--AGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
2305288 ATATAAAGT-AAAATA-GG-GCAAAGAAAAG-AT
126 AT-TATA-TCAAAA-ACGGTGGAAAGAAAAGCTT
* * * * * * * *
2305318 TTCAATGC-AAAAGAAAATCATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATA-GTGGC
1 TTC-TTGCGAAACG-AAAGCACCAATATCATGTATCCTAATGA-GAGAATATGTTTA-AGGTGCC
** * * * *
2305381 TAATC-AAAAAATGAATGAAGATCATTACTCGA-ATCCATGTTTGTCTTATTT--GACGCACGAA
62 TAATCTTGAAAA-GAATGGAGAT-AGTA-T-GAGATTCATGTTTGTCTTATTTAAGA-G-ACAAA
* ** * * *
2305442 CATCAACTT-TA-CAAAAATTGGTGGGAAG-AAAGCCT
121 CTTTGA-TTATATCAAAAA-CGGTGGAAAGAAAAGCTT
* * * * * *
2305477 TTCTAGCAAAAAAACAAAAGCACCAATATCGTGTATCCTAATGAGAGGACA-AAGTTTAATGTGC
1 TTCTTGC---GAAACGAAAGCACCAATATCATGTATCCTAATGAGA-GA-ATATGTTTAAGGTGC
* *
2305541 CTAATCTTGAAAAGAATGGAGAATGGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAGTT
61 CTAATCTTGAAAAGAATGGAG-ATAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTT
2305606 TGATTATATCAAAAACGGTGGAAAGAAAAGCTT
124 TGATTATATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * *
2305639 TTCCTCCGACACCAAAGCATCAATGTCATGTAAT-CTAATGAG
1 TTCTTGCGAAACGAAAGCACCAATATCATGT-ATCCTAATGAG
2305681 GACAATGTGT
Statistics
Matches: 387, Mismatches: 91, Indels: 86
0.69 0.16 0.15
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 30 0.08
159 207 0.53
160 26 0.07
161 85 0.22
162 28 0.07
163 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (156 bp):
TTCTTGCGAAACGAAAGCACCAATATCATGTATCCTAATGAGAGAATATGTTTAAGGTGCCTAAT
CTTGAAAAGAATGGAGATAGTATGAGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTAT
ATCAAAAACGGTGGAAAGAAAAGCTT
Found at i:2307612 original size:12 final size:11
Alignment explanation
Indices: 2307593--2307668 Score: 79
Period size: 12 Copynumber: 6.9 Consensus size: 11
2307583 AGAGAAAGAA
2307593 GAGATAGGAGG
1 GAGATAGGAGG
2307604 GATGATAGGAGG
1 GA-GATAGGAGG
2307616 AGAGATAGGA--
1 -GAGATAGGAGG
*
2307626 GAGATAGTA--
1 GAGATAGGAGG
2307635 GAGATAGGAGG
1 GAGATAGGAGG
2307646 GATGATAGGAGG
1 GA-GATAGGAGG
2307658 AGAGATAGGAG
1 -GAGATAGGAG
2307669 AGATAATAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
9 16 0.28
11 4 0.07
12 33 0.58
13 4 0.07
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2307627 original size:9 final size:9
Alignment explanation
Indices: 2307613--2307673 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
2307603 GGATGATAGG
2307613 AGGAGAGAT
1 AGGAGAGAT
2307622 AGGAGAGAT
1 AGGAGAGAT
*
2307631 AGTAGAGAT
1 AGGAGAGAT
*
2307640 AGGAGGGAT
1 AGGAGAGAT
* *
2307649 --GATAG-G
1 AGGAGAGAT
2307655 AGGAGAGAT
1 AGGAGAGAT
2307664 AGGAGAGAT
1 AGGAGAGAT
2307673 A
1 A
2307674 ATAGAGAGAG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.43, C:0.00, G:0.44, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2307642 original size:42 final size:42
Alignment explanation
Indices: 2307583--2307702 Score: 204
Period size: 42 Copynumber: 2.9 Consensus size: 42
2307573 TAGCCCTCAA
* *
2307583 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
2307625 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* *
2307667 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAGA
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGA
2307703 AGAGAAGAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.12
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:2307677 original size:12 final size:12
Alignment explanation
Indices: 2307595--2307682 Score: 59
Period size: 12 Copynumber: 7.9 Consensus size: 12
2307585 AGAAAGAAGA
*
2307595 GATAGGAGGGAT
1 GATAGGAGAGAT
2307607 GATAGGAGGAGA-
1 GATAGGA-GAGAT
2307619 GATA-G-GAGA-
1 GATAGGAGAGAT
*
2307628 GATA-G-TAGA-
1 GATAGGAGAGAT
*
2307637 GATAGGAGGGAT
1 GATAGGAGAGAT
2307649 GATAGGAGGAGA-
1 GATAGGA-GAGAT
2307661 GATAGGAGAGAT
1 GATAGGAGAGAT
*
2307673 AATA-GAGAGA
1 GATAGGAGAGA
2307683 GGAGGGATGA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
9 16 0.25
10 1 0.02
11 13 0.20
12 28 0.44
13 6 0.09
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:2313249 original size:159 final size:159
Alignment explanation
Indices: 2312990--2313898 Score: 474
Period size: 159 Copynumber: 5.8 Consensus size: 159
2312980 TTCTTGCGAC
* * * * * * **
2312990 ACAAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAA
1 ACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCTAAAAAA
* ** ** * * *
2313054 GAATGGAGATTGTTACAAGAATCAACGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAA
65 GAATGAAGATCATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAG-AA
2313119 AATAGG-GCAAAGAAAAG-ATTTCAATGCAAA
128 AATAGGTGCAAAGAAAAGCATTTCAATGCAAA
* * * *
2313149 AGAAAATCATCAATATCATTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATC-AAAAAAT
1 ACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTAAAAAA-
* * *
2313213 GAATGAAGATCATTACT-AGAATCCATGTTTGTCTTATTTGAGGCATGAACTTCGACTTTACA-A
65 GAATGAAGATCATTA-TGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTA-AGA
* ** * * **
2313276 AAATTGGTGGGAAG-AAAGCCTTTCTA-GCGGA
127 AAATAGGTGCAAAGAAAAGCATTTCAATGCAAA
* * * ** **
2313307 ACAAAAGCACCAATATCGTGTATCCTAATGAGAAGACA-AAGTTTA-ATGTGCCTAATCTTCAAA
1 ACAAAAGCATCAATATCATGTATCCTAATGAGGAGA-ATGTGTTTATA-GTGCCTAATCTAAAAA
* * * * * * *
2313370 AGAATGCAGAAT-AGTATGAGCATTCATGTTTGTCTTATTTAAGAG-TCAAACATTGATTCTATC
64 AGAATGAAG-ATCATTATGAGAATCCATGTTTGTCTTATTTAAGGGAT-GAACTTTGATT-TA--
* * * * * *
2313433 A-AAAAT-GGTGGAAAGAAAGGCTTTTC-TTGCGAC
124 AGAAAATAGGTGCAAAGAAAAGCATTTCAATGCAAA
* * ** * * * * * **
2313466 ACCAAAGCATCAATGTCATGTATTGTCATGAAGAGAATGTGTTTTTGGATTCC-AATCTTGAAAA
1 ACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCTAAAAAA
* ** * * *
2313530 GAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGTTATTAAG---
65 GAATGAAGATCATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGAAA
2313592 -TAGG-GCAAAGAAAAG-ATTTCAATGCAAA
129 ATAGGTGCAAAGAAAAGCATTTCAATGCAAA
* * * * * *
2313620 AGAAAATCATCAATACCATTTATCCCAATGAGGAGAATGTGTTTATAGTGTCTAATC-AAAAAAT
1 ACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTAAAAAA-
* * * * * * **
2313684 GAATGAAGATCATTACT-AGAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACCATACA-A
65 GAATGAAGATCATTA-TGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTA-AGA
* ** * * *
2313747 AAATTGGTGGGAAG-AAAGCCTTTC-TTGCGAA
127 AAATAGGTGCAAAGAAAAGCATTTCAATGCAAA
** * ** * * * **
2313778 ACAAAAGC-TACAATATTGTGTATCCTATTGAAAATACTATGTTTA-AGGTGCCTAATCTTGAAA
1 ACAAAAGCAT-CAATATCATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTAAAAA
* * * * **
2313841 AGAATGCAGAAT-ATTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
64 AGAATGAAG-ATCATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATT
2313899 CTATAAAAAA
Statistics
Matches: 555, Mismatches: 153, Indels: 86
0.70 0.19 0.11
Matches are distributed among these distances:
153 10 0.02
154 96 0.17
155 4 0.01
157 9 0.02
158 205 0.37
159 224 0.40
160 7 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (159 bp):
ACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTAAAAAAG
AATGAAGATCATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTAAGAAAAT
AGGTGCAAAGAAAAGCATTTCAATGCAAA
Found at i:2313768 original size:471 final size:469
Alignment explanation
Indices: 2312848--2313951 Score: 1631
Period size: 471 Copynumber: 2.3 Consensus size: 469
2312838 GAATCCAAAA
* * **
2312848 TACCAATATCGTGTATCCTAATGAGAAGAC----T-ATGTTCCTAATCTTGAAAAGAGTGGGGAA
1 TACCAATATCGTGTATCCTAATGAGAAGACAGTTTAATGTGCCTAATCTTGAAAAGAATGCAGAA
*
2312908 TAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG--
66 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
*
2312971 -AAA-CTTTGATTCTTGCGACACAAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTT
131 AAAAGC-TT--TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTT
2313034 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAACGCTTGTCTTATTTAAGGGA
193 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAACGCTTGTCTTATTTAAGGGA
2313099 TGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATA
258 TGAACTTTGATATTAAG----ATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATA
* * *
2313164 TCATTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTAC
319 CCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTAC
* * * * **
2313229 TAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTCGACTTTACAAAAATTGGTGGGAAGAAAG
384 TAGAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAG
*
2313294 CCTTTCTAGCGGAACAAAAGC
449 CCTTTCTAGCGAAACAAAAGC
*
2313315 -ACCAATATCGTGTATCCTAATGAGAAGACAAAGTTTAATGTGCCTAATCTTCAAAAGAATGCAG
1 TACCAATATCGTGTATCCTAATGAGAAGAC--AGTTTAATGTGCCTAATCTTGAAAAGAATGCAG
* * * *
2313379 AATAGTATGAGCATTCATGTTTGTCTTATTTAAGAGTCAAACATTGATTCTATCAAAAATGGTGG
64 AATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
**
2313444 AAAGAAAGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTGTCA-TGAAGAGAATGTGT
129 AAA-AAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATTGAAGAGAATGTGT
* ** *
2313508 TTTTGGATTCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGG
191 TTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAACGCTTGTCTTATTTAAGG
*
2313573 GATGAACTTTGTTATTAAG-TAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATACC
256 GATGAACTTTGATATTAAGATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATACC
*
2313637 ATTTATCCCAATGAGGAGAATGTGTTTATAGTGTCTAATCAAAAAATGAATGAAGATCATTACTA
321 ATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTA
2313702 GAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCC
386 GAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCC
*
2313767 TTTCTTGCGAAACAAAAGC
451 TTTCTAGCGAAACAAAAGC
* * * * *
2313786 TA-CAATATTGTGTATCCTATTGAAAATACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCAG
1 TACCAATATCGTGTATCCTAATGAGAAGAC-A-GTTTAATGTGCCTAATCTTGAAAAGAATGCAG
* * *
2313850 AATATTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACAGTGG
64 AATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
*
2313915 AAATAAAGCTTTTCTTACGACACCAAAGCATCAATGT
129 AAA-AAAGCTTTTCTTGCGACACCAAAGCATCAATGT
2313952 TATTGATGAT
Statistics
Matches: 575, Mismatches: 46, Indels: 29
0.88 0.07 0.04
Matches are distributed among these distances:
466 29 0.05
470 30 0.05
471 299 0.52
472 2 0.00
473 82 0.14
476 126 0.22
477 4 0.01
478 2 0.00
479 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (469 bp):
TACCAATATCGTGTATCCTAATGAGAAGACAGTTTAATGTGCCTAATCTTGAAAAGAATGCAGAA
TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTG
GATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAACGCTTGTCTTATTTAAGGGATGA
ACTTTGATATTAAGATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATACCATTTA
TCCCAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATC
CATGTTTGTATCATTTGAGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCTTTCT
AGCGAAACAAAAGC
Found at i:2315076 original size:158 final size:158
Alignment explanation
Indices: 2314913--2315550 Score: 410
Period size: 157 Copynumber: 4.0 Consensus size: 158
2314903 AAAATAGGGC
* *
2314913 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGATTGTGTT
1 AAAGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTAATCTTAATGAGGAGATTGTGTT
*
2314978 TATGGTGCCAATC-ACAAAATGAATGAAGATCAACACT-AGAATCCATGTTTGGCTCATTTGAAG
66 TATGGTGCCAATCTACAAAA-GAATGAAGAT-AATACTGAGAATCCATGTTTGGCTCATTT-AAG
2315041 CACGAAC-TTG-GTCCAGACAAAAATTGGTGG
128 CACGAACTTTGAGTCCA-ACAAAAATTGGTGG
* *** * * * ** * * * *
2315071 GAAG-AAAGCCATTCTTGCGAAACAAAAGCACCAATATCATGCATCCTAATGAGAAGACTATGTT
1 AAAGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTAATCTTAATGAGGAGATTGTGTT
* ** * * * * * *
2315135 TAAGGTGCCTAATCTTGAAAAGAATGCAGAATAGTA-TGAGTATTCATGTTTGTCTTATTTAAG-
66 TATGGTGCC-AATCTACAAAAGAATGAAG-ATAATACTGAGAATCCATGTTTGGCTCATTTAAGC
* * * *
2315198 A-GAAACTTTGATTCTATCAAAAA-CGGTGG
129 ACG-AACTTTGAGTCCAACAAAAATTGGTGG
* * * * * * * * * *
2315227 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTC-TAATGAAGAGAATGCGT
1 AAAGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCAT-TAATCTTAATGAGGAGATTGTGT
* ** ** ** ** * * *
2315291 TTTTGGAT-CTCAATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATG-CTGGCCTTATTTAA
65 TTATGG-TGC-CAATCTACAAAAGAATGAAGATAATACTGAGAATCCATGTTTGG-CTCATTTAA
* * * ** ** * *
2315354 GAGATGAACTTTGATTTTAAGGAAAATAGG-GC
127 G-CACGAACTTTGAGTCCAACAAAAATTGGTGG
* *
2315386 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGATTGTGTT
1 AAAGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTAATCTTAATGAGGAGATTGTGTT
* * *
2315451 TATAGTGCCAAT-GACAAAATGAATGAAGATCAATACT-AGAATCCATGTTTGGCTCATTTGAGG
66 TATGGTGCCAATCTACAAAA-GAATGAAGAT-AATACTGAGAATCCATGTTTGGCTCATTT-AAG
*
2315514 CACGAAC-TT-AGACCATACAAAAATTGGTGG
128 CACGAACTTTGAGTCCA-ACAAAAATTGGTGG
*
2315544 GAAGAAA
1 AAAGAAA
2315551 GCCATTCTTG
Statistics
Matches: 356, Mismatches: 99, Indels: 50
0.70 0.20 0.10
Matches are distributed among these distances:
155 1 0.00
156 20 0.06
157 164 0.46
158 85 0.24
159 83 0.23
160 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (158 bp):
AAAGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTAATCTTAATGAGGAGATTGTGTT
TATGGTGCCAATCTACAAAAGAATGAAGATAATACTGAGAATCCATGTTTGGCTCATTTAAGCAC
GAACTTTGAGTCCAACAAAAATTGGTGG
Found at i:2315349 original size:157 final size:156
Alignment explanation
Indices: 2314148--2315462 Score: 529
Period size: 159 Copynumber: 8.3 Consensus size: 156
2314138 ACCAAAATAC
* * * * * *
2314148 CAATATCGTGTATCCTAATG-AGAAGACTTTGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAA
1 CAATATCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-AATCTTGAAAAGAATGAGG-A
* * * * *
2314212 TAG-TATGAGTATTC-ATGTTTGTCC-TATTTAAGAGACAAACTTTGATT-TCATCAAAAACAGT
63 TAGTTTTGAG-AATCAATG-CTGGCCTTATTTAAGAG--AAACTTTGATTCT-ATCAAAAACGGT
* * * **
2314273 GAAAAGAAAAGCTTTTTTTGCGACATGAAAGCAT
123 GGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * * * *
2314307 CAATGTCATATA-TCATAATGAAGAGAATGTGTTTTTTGATCCCAATCTTGAAAAGAATG-GAGA
1 CAATATCATGTATTC-TAATGAAGAGAATGTG-TTTATGGTGCCAATCTTGAAAAGAATGAG-GA
* *** * * * * *
2314370 TTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATAT-TATGTAAAATA-GGA
63 TAGTTTTGAGAATCAATGCTGGCCTTATTTAAGAGA--AACTTTGAT-TCTAT-CAAAA-ACGG-
* * * * *
2314433 T--AAAGAAAAG-ATTTCAATGCAAAAGAAAATCAT
122 TGGAAAGAAAAGCTTTTC-TTGCGAAACAAAAGCAT
* * * * * * ** * *
2314466 CAATATTATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATC-AAAAAATGATTGAAGAT
1 CAATATCATGTATTCTAATGAAGAGAATGTGTTTATGGTGCC-AATCTTGAAAA-GAATGAGGAT
* * * * * * *
2314530 CA-TTACT-AGAATCCATGTTTGTCTTATTTGAG-GAACGAACTTTGACTT-TA-CAAAAATTGG
64 -AGTT-TTGAGAATCAATGCTGGCCTTATTTAAGAG-A--AACTTTGA-TTCTATCAAAAA-CGG
* * * * *
2314590 TGGGAAG-AAAGCCTTTCTAGTGAAACAAAAGCAC
122 TGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * * * * *
2314624 CAATATCGTGCATCCTAATG-AGAAGACA-GAGTTTAAGGTGCCTAATCTTGAAAAGAA-CACGG
1 CAATATCATGTATTCTAATGAAG-AGA-ATGTGTTTATGGTGCC-AATCTTGAAAAGAATGA-GG
* * * * *
2314686 AATAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
62 -ATAGTTTTGAG-AATCAATGCTGGCCTTATTTAAGAG--AAACTTTGATTCTATCAAAAACGGT
* *
2314749 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
123 GGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * *
2314783 CAATGTCATCATGTATTCTAATGAAGTGAATGTGTTTTTGGAT-CTCAATCTTGAAAAGAATGGG
1 CAA--T-ATCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGC-CAATCTTGAAAAGAATGAG
* * **
2314847 GACT-GTTTTGAGAATCAATGCTGGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-G
61 GA-TAGTTTTGAGAATCAATGCTGGCCTTATTTAAGAGA--AACTTTGATTCT-ATCAAAA-ACG
* * * * * *
2314910 G-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
121 GTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * * ** *
2314945 CAATATCAT-TAATCTTAATGAGGAGATTGTGTTTATGGTGCCAATC-ACAAAATGAATGAAGAT
1 CAATATCATGTATTC-TAATGAAGAGAATGTGTTTATGGTGCCAATCTTGAAAA-GAATGAGGAT
**** * * * * * * *
2315008 CAACACT-AGAATCCATGTTTGG-CTCATTTGAAGCACG-AAC-TTG-GTCCAGACAAAAATTGG
64 -AGTTTTGAGAATCAATG-CTGGCCTTATTT-AAG-A-GAAACTTTGATTCTA-TCAAAAA-CGG
* ** *
2315068 TGGGAAG-AAAGCCATTCTTGCGAAACAAAAGCAC
122 TGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * * * * *
2315102 CAATATCATGCATCCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCAGAA
1 CAATATCATGTATTCTAATGAAG-AGAATGTGTTTATGGTGCC-AATCTTGAAAAGAATG-AGGA
* * * * *
2315166 TAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGTGGAA
63 TAGTTTTGAG-AATCAATGCTGGCCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGTGGAA
* *
2315229 AGAAAAGCTTTTCTTGCGACACCAAAGCAT
127 AGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * * *
2315259 CAATGTCATGTATTCTAATGAAGAGAATGCGTTTTTGGAT-CTCAATCTTGAAAAGAATGGGGAT
1 CAATATCATGTATTCTAATGAAGAGAATGTGTTTATGG-TGC-CAATCTTGAAAAGAATGAGGAT
* * ** *
2315323 TGTTTTGAGAATCAATGCTGGCCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATA-GG-GC
64 AGTTTTGAGAATCAATGCTGGCCTTATTTAAGAGA--AACTTTGATTCT-ATCAAAA-ACGGTGG
* * * * *
2315386 AAAGAAAAGATTTTCATGCAAAAGAAAATCAT
125 AAAGAAAAGCTTTTCTTGCGAAACAAAAGCAT
* * * *
2315418 CAATATCAT-TAATCTTAATGAGGAGATTGTGTTTATAGTGCCAAT
1 CAATATCATGTATTC-TAATGAAGAGAATGTGTTTATGGTGCCAAT
2315463 GACAAAATGA
Statistics
Matches: 859, Mismatches: 206, Indels: 183
0.69 0.17 0.15
Matches are distributed among these distances:
155 3 0.00
156 26 0.03
157 175 0.20
158 195 0.23
159 308 0.36
160 28 0.03
161 11 0.01
162 101 0.12
163 11 0.01
164 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.31
Consensus pattern (156 bp):
CAATATCATGTATTCTAATGAAGAGAATGTGTTTATGGTGCCAATCTTGAAAAGAATGAGGATAG
TTTTGAGAATCAATGCTGGCCTTATTTAAGAGAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
AAGCTTTTCTTGCGAAACAAAAGCAT
Found at i:2315441 original size:473 final size:474
Alignment explanation
Indices: 2314085--2315571 Score: 2250
Period size: 473 Copynumber: 3.1 Consensus size: 474
2314075 ATTAATCTTA
* ** * * * *
2314085 AGGCATGAACTTAGACTTTACAAAAATTTGT-GGAAAAAAGCCATTCTTGCAAAACCAAAA-TAC
1 AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAA-CAAAAGCAC
* * *
2314148 CAATATCGTGTATCCTAATGAGAAGACTTTGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
65 CAATATCGTGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCGGAAT
* * *
2314213 AGTATGAGTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGATT-TCATCAAAAACAGTGAAA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-AAACTTTGATTCT-ATCAAAAACGGTGGAA
* ** *
2314277 AGAAAAGCTTTTTTTGCGACATGAAAGCATCAATGTCATATA-TCATAATGAAGAGAATGTGTTT
193 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTC-TAATGAAGAGAATGTGTTT
* * * *** * * *
2314341 TTTGATCCCAATCTTGAAAAGAATGGAGATTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGGA
257 TTGGATCTCAATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGGA
* * * **
2314406 TGAACTTTGATATTATGTAAAATAGGATAAAGAAAAGA-TTTCAATGCAAAAGAAAATCATCAAT
322 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAAT
* * * * * * * *
2314470 ATTATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCAAAAAATGATTGAAGATCATTA
386 ATCATTAATCTTAATGAGGAGATTGTGTTTATAGTGCC-AATCACAAAATGAATGAAGATCAATA
* *
2314535 CTAGAATCCATGTTTGTCTTATTTG
450 CTAGAATCCATGTTTGGCTCATTTG
* * ** * * *
2314560 AGGAACGAACTTTGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTAGTGAAACAAAAGCACC
1 AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAGCACC
* **
2314625 AATATCGTGCATCCTAATGAGAAGAC-AGAGTTTAAGGTGCCTAATCTTGAAAAGAACACGGAAT
66 AATATCGTGCATCCTAATGAGAAGACTA-TGTTTAAGGTGCCTAATCTTGAAAAGAATGCGGAAT
2314689 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAA
*
2314754 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATCATGTATTCTAATGAAGTGAATGTGTT
194 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATG---TCATGTATTCTAATGAAGAGAATGTGTT
*
2314819 TTTGGATCTCAATCTTGAAAAGAATGGGGACTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGG
256 TTTGGATCTCAATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGG
2314884 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
321 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* *
2314949 ATCATTAATCTTAATGAGGAGATTGTGTTTATGGTGCCAATCACAAAATGAATGAAGATCAACAC
386 ATCATTAATCTTAATGAGGAGATTGTGTTTATAGTGCCAATCACAAAATGAATGAAGATCAATAC
2315014 TAGAATCCATGTTTGGCTCATTTG
451 TAGAATCCATGTTTGGCTCATTTG
* * * *
2315038 AAGCACGAACTTGGTCCAGACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAGCACC
1 AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAGCACC
* *
2315103 AATATCATGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCAGAATA
66 AATATCGTGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCGGAATA
2315168 GTATGAGTATTCATGTTTGTCTTATTTAAGAG-AAACTTTGATTCTATCAAAAACGGTGGAAAGA
131 GTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGA
*
2315232 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGCGTTTTTGG
196 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTTTGG
*
2315297 ATCTCAATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGAGATGAA
261 ATCTCAATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGGATGAA
2315362 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
326 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
*
2315427 TAATCTTAATGAGGAGATTGTGTTTATAGTGCCAATGACAAAATGAATGAAGATCAATACTAGAA
391 TAATCTTAATGAGGAGATTGTGTTTATAGTGCCAATCACAAAATGAATGAAGATCAATACTAGAA
2315492 TCCATGTTTGGCTCATTTG
456 TCCATGTTTGGCTCATTTG
2315511 AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAG
1 AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAG
2315572 GAAAAAAGAG
Statistics
Matches: 925, Mismatches: 77, Indels: 22
0.90 0.08 0.02
Matches are distributed among these distances:
473 297 0.32
475 32 0.03
476 233 0.25
477 1 0.00
478 190 0.21
479 166 0.18
480 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (474 bp):
AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAGCACC
AATATCGTGCATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCGGAATA
GTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGA
AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTTTGG
ATCTCAATCTTGAAAAGAATGGGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGGGATGAA
CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
TAATCTTAATGAGGAGATTGTGTTTATAGTGCCAATCACAAAATGAATGAAGATCAATACTAGAA
TCCATGTTTGGCTCATTTG
Found at i:2315913 original size:352 final size:353
Alignment explanation
Indices: 2315253--2315923 Score: 1060
Period size: 352 Copynumber: 1.9 Consensus size: 353
2315243 TGCGACACCA
* * *
2315253 AAGCATCAATGTCATGTATTCTAATGAAGAGAATGCGTTTTTGGATCTCAATCTTGAAAAGAATG
1 AAGCATCAAGGTCATGTATCCTAATGAAGAGAATGCGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * *
2315318 GGGATTGTTTTGAGAATCAATGCTGGCCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAG
66 GAGATTGTTATGAGAATCAATGCTGACCGTATTTAAGAGATGAACTTTGATTTTAAGAAAAATAG
*
2315383 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGATTGT
131 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAAGGAGGAGATTGT
* * **
2315448 GTTTATAGTGCCAATGACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAG
196 GTTTATAGTGCCAATCACAAAATGAACGAAGATCAATACTAGAATCCACATTTGGCTCATTTGAG
* *
2315513 GCACGAACTTAGACCATACAAAAATTGGTGGGAAGAAAGCCATTCTTGCGAAACAAAAGGAAAAA
261 GCACGAACTTAGACCATACAAAAATTGGTGGGAAAAAAGCCATTCTTGCAAAACAAAAGGAAAAA
2315578 AGAGCTTTCTGCGACCTAAAGCAGCATC
326 AGAGCTTTCTGCGACCTAAAGCAGCATC
* ** * *
2315606 AAGCATCAAGGTCTTGTATCCTAATGAA-CTAATGTGTTTTTGGATCCCAATCTTGAAAAGCATG
1 AAGCATCAAGGTCATGTATCCTAATGAAGAGAATGCGTTTTTGGATCCCAATCTTGAAAAGAATG
* * *
2315670 GAGATTGTTATGAGAATCGATGCCT-ATCGTATTTAAGGGATGAACTTTGATTTTAAGAAAAATA
66 GAGATTGTTATGAGAATCAATG-CTGACCGTATTTAAGAGATGAACTTTGATTTTAAGAAAAATA
2315734 GGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAAGGAGGAGATTG
130 GGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAAGGAGGAGATTG
2315799 TGTTTATAGTGCCTAATCACAAAATGAACGAAGATCAATACTAGAATCCACATTTGGCTCATTTG
195 TGTTTATAGTGCC-AATCACAAAATGAACGAAGATCAATACTAGAATCCACATTTGGCTCATTTG
** * *
2315864 AGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTGCAAAACCAAAG
259 AGGCACGAACTTAGACCATACAAAAATTGGTGGGAAAAAAGCCATTCTTGCAAAACAAAAG
2315924 CACCAATATC
Statistics
Matches: 289, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
352 186 0.64
353 103 0.36
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (353 bp):
AAGCATCAAGGTCATGTATCCTAATGAAGAGAATGCGTTTTTGGATCCCAATCTTGAAAAGAATG
GAGATTGTTATGAGAATCAATGCTGACCGTATTTAAGAGATGAACTTTGATTTTAAGAAAAATAG
GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAAGGAGGAGATTGT
GTTTATAGTGCCAATCACAAAATGAACGAAGATCAATACTAGAATCCACATTTGGCTCATTTGAG
GCACGAACTTAGACCATACAAAAATTGGTGGGAAAAAAGCCATTCTTGCAAAACAAAAGGAAAAA
AGAGCTTTCTGCGACCTAAAGCAGCATC
Found at i:2317292 original size:476 final size:475
Alignment explanation
Indices: 2315606--2325171 Score: 12385
Period size: 476 Copynumber: 20.1 Consensus size: 475
2315596 AAGCAGCATC
* * ** *
2315606 AAGCATCAAGGTCTTGTATCCTAATGAA-CTAATGTGTTTTTGGATCCCAATCTTGAAAAGCATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * *
2315670 GAGATTGTTATGAGAATCGATGCCTATCGTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * *
2315735 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAAGGAGGAGATTGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* *
2315800 GTTTATAGTGCCTAATCACAAAATGAACGAAGATCAATACTAGAATCCACATTTGGCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* *
2315865 GGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAA
* *
2315930 TATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGGCTAATCTTGAAAAGAATGGGGAATAGT
326 TATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGT
* * * *
2315995 ATGAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATAAAAAAAGGTAGAAA-AA
391 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
*
2316059 AGAGCTTTTCTTGCGACACTA
456 A-AGCTTTTCTTGCGACACCA
* * * *
2316080 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCTATCTTAAAAAGAGTA
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * * * *
2316145 GAGATTATTACGAGAATTGATGCCTATCTAATTTAAGGGATGAACTTTGATATTAAGTAAAAAAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * *
2316210 GGCAAAGAAAAGAGTTCCATGCAAAAG-AGATCATCAATAACATTAATCTTTATGAGGAGAATAT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
*
2316274 GTTTATAGTGCCTAATCACAAAATGAATGAAGAAT-AATACTAGAATCCACATTTGGCTCATTTG
196 GTTTATAGTGCCTAATCACAAAATGAATGAAG-ATCAATACTAGAATCCACGTTTGGCTCATTTG
* * * *
2316338 AGGCACAAACTTAGACTTTTCAAAAATTTAGG-GGAAAAAAGCCTTTCTT-CTGAAACGAAAGCA
260 AGGCACGAACTTAGACTTTACAAAAA-TT-GGTGGGAAAAAGCCTTTCTTGC-GAAACCAAAGCA
* * * * *
2316401 CCCATATTGTGTATCCTAATGAGAAGACTATGTTTTAGGTGCCTTATCTTGAAAAGAATGAGGAA
322 CCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAA
* *
2316466 TAGAATGAGTATTCATGTTTGTCTT-TCTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGG
387 TAGTATGAGTATTCATGTTTGTCTTAT-TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
2316530 AA-AAAAGCTTTTCTTGCGACACCA
451 AAGAAAAGCTTTTCTTGCGACACCA
* * * * *
2316554 AAGCAACACTGTCTTGTATCCTAATGAAGGGAGA-GTGTTTTTGGTTCCCAATCTTGAAAAGAAT
1 AAGCATCAATGTCATGTATCCTAATGAAGAGA-ATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
* * * * *
2316618 GGAGATTGTTACGAGAATCTATGCTTCTCTTGTTTTAGGGATGAACTTTGATTTTAAAGAAAATA
65 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * * *
2316683 CGGCAAAGAAAGGATTTCGATGCAAAAGAAAATCATCCATATCATAAATCTTAATGAGGCA-AAT
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGG-AGAAT
* * * * * * *
2316747 GTGTTTATAATGCCTAATCACAAAATAAATGAAGATCATTGCTAGAATCTATGTTTGTCTCATTT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTT
* * * * *
2316812 GAGGCACGAACTTAGACTTTACCAAAATTTGTGGGCAAAAAGCCTTTCTTGCAAAAGCAATGCAC
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * *
2316877 CATTATCGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGAGGAAT
323 CAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
* *
2316942 AGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
*
2317007 GAAAAGCTTTTCTTGCGACACGA
453 GAAAAGCTTTTCTTGCGACACCA
* * * ** * *
2317030 AAGCATCAATGTCATGCATCCTAAAGAAAAGAATGTGTTTTTTTATCCTAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * *
2317095 GAAATTGTTACGAGAATCAATGCTTGTCTTATTTAAGGAATGAACTTTGATATTAAGTAAAATTG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * ** *
2317160 GGCAAAGAAAAGATTTCCATGCTAAAGAAAACCATCAATATCATTTATCCAAATGAGGAGAATAT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* *
2317225 GTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATACTAGAATCCACGTTTGGCTTATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * * * * *
2317290 GGCACGGATTTAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAACATCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCA
* * ** * *
2317355 ATATCGTGCATCCTTATGAGAAGACTACATTTATGGTGCCTAATCCTGAAAAGAAT-GGGAATAG
325 ATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG
* * * *
2317419 CATGAGTATTCATTTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAGGA
390 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
2317484 AAAGCTTTTCTTGCGACACCA
455 AAAGCTTTTCTTGCGACACCA
* * * * * * *
2317505 AAGCATCAATGTCACGTATTCTAATGAAGTGAATATGTTTTTGGATCCCAATCCTAAAAAGGATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
** * *
2317570 G-GATTGTTTTGAGAATCGATGCTT-ACTTTATTTAAGGGATGAACATTGATTTTAAGGAAAATA
66 GAGATTGTTACGAGAATCGATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * * *
2317633 GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAGTATCCTTAATCTTAATTAGGGGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATG
* * * ** * *
2317698 TGTTTGTTGTGCCCAATCACAAAACCAATGAAGATCAATACTTGAATCCATGTTTGGCTC-TCTT
195 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCAT-TT
* * ** * *
2317762 AAGGCACGAATTTAGACCATACAAAAATTGGTGGGAAAAAAG-CTTCCTTGCAAAACCAAAGCAC
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * *
2317826 CAATATCATGTACCCTAATGAGAAGACTGTGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
323 CAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
* * * * *
2317891 AGTATGAGTATTCACGTTTG-CATTTTTTAAGAGACAAACTCTGATTCTATCAAGAACGGTAGAA
388 AGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
*
2317955 AGAAAAGCTTTTCTTGCGACACCT
452 AGAAAAGCTTTTCTTGCGACACCA
* *
2317979 AAGCATCAATGTCATGTATCCTAACGAAAAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * *
2318044 GAAAATGTTACCAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * ** *
2318109 GGCAAAGAAAAGATTTCCATGCAAAACAAAATTATCATTATCATTTATCCAAATGAGAAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* * * *
2318174 GTTTATAGTGCCTAATCA-AAAAGTGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTG
196 GTTTATAGTGCCTAATCACAAAA-TGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTG
* * * * *
2318238 AGGCACGAACTTGGACTTTACAAAAATTGGTGGTACGAAAGCTTTTCTTGCGAAACAAAAGCACC
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * ** *
2318303 AATATCATGTATCCTAACGAGAAGACAATGTTTAAGGTGCCTAATCTTGAAAAGACCGGGAAATA
324 AATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATA
* * *
2318368 GCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATGAAAAACGGTGGAAAG
389 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* *
2318433 AAAAGCTTTTCTTGCAACACGA
454 AAAAGCTTTTCTTGCGACACCA
* * *
2318455 AATCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTCGATCCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * *
2318520 AAGATTGTTACAAGAATCAATGCTTGTCTTATTTAAGGGATAAACTTTGATATTAAGTAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * * * *
2318585 GGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAACATAAATAATGTTATTGAGGAGATTGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* *
2318650 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGCTTGGCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * *
2318715 GCCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCACCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCA
* * ** * *
2318780 ATATCGTGTATCTTAAAGAGAAGTTTATGTTTAAGGTGCCTAACCTTCAAAAGAATGGGGAATAG
325 ATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG
*
2318845 TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAACGGTGGAAAGA
390 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
2318910 AAAGCTTTTCTTGCGACACCA
455 AAAGCTTTTCTTGCGACACCA
2318931 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * * * *
2318996 GAGATTATT-CGAGAATAGATGCTTGCCTTATTTAGGGGATGAACATTGATATTATGTAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * *
2319060 GGCAAAGAAAAGATTTCCATGCAAAGGAAAATCATCAATATCATTTATCTTAATGAGGAGAATTT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* * * * *
2319125 GGTTATAGTGCCTCATCACAAAATGAATGAAGATCAACATTAGAATCCACGTTTGGCTCATTTGT
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * * *
2319190 GGTATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCAGCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCA
* ** * *
2319255 ATATCGTGTA--CAAGTATGAGAAGACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATT
325 ATATCGTGTATCCTA--ATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
* * * * *
2319318 AGTATGAGTTTTTATGTTTGTCCTACTTAAGAGACAGACTTTGATTCTATCAAAAACGGTGGAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
*
2319383 -AAAAGCTTTTCTTGTGACACCA
453 GAAAAGCTTTTCTTGCGACACCA
* * * * **
2319405 AAGCATCAATGTCTTGTATCTTAATGTAGGGAATGTGTTTTTGGATTGCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * *
2319470 GAGATTGTTTCTAGAATCGATGCTTATCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * *
2319535 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGC
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* * * *
2319600 GTTTATAGTGCCTAATCACAAAATGAATGAATATCAATACTGGAATCCATGTTTGGCTCTTTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * * * * * *
2319665 GGCACAAACTTAGACTTTAAAAAAATTGGTTAGAAAAAAGCTTTTCTTGAGAAACCAAAGCACCC
261 GGCACGAACTTAGACTTTACAAAAATTGG-TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCA
* *
2319730 ATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGAGGAATAG
325 ATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG
* * * * * * *
2319795 TATGGGTATTCAAGTTTTTCTTTTTTAAGAGACAAACTTTGATTCTATAAAAAACGGTAGAAATA
390 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* **
2319860 AAAGCTTTCCTTGCGACATGA
455 AAAGCTTTTCTTGCGACACCA
* * *
2319881 AAGCATCAATGTCATGTATCTTAATGAAGAGAATGTGTTTTCGAATCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
** ** * * *
2319946 GAGATTGTTACGAGAATTAATGCTTGTCTTATTTAACAGATAAACTTTGATATTAAGTAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * *
2320011 GGCAAAGAAAAGATTTCTATGCAAAAAAAAAAAATCATCAATAACATTAATCTTAGTGAGGAGAA
131 GGCAAAGAAAAGATTTCCATGC---AAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAA
* * * * *
2320076 TATGTTTATAGTGCCTAATCATAAAAGGAAAGAAGATCAATACTAGAATCCACGTTTGCCTCATT
193 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATT
* * * * * * *
2320141 TGAGGTATGAATTTAGACTTTACGAAAATTGGTTGGAAGAAAGCCTTTCTTGTGAAACCAAAACA
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCA
* * * * ** ** *
2320206 TCAATATTGTGTACCCTTATGAGAAGACTAAATTTGTGGTGCCTAATCTTGAAAAGAATGAGGAA
322 CCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAA
* * * *
2320271 TAGTATGAGTATTCATTTTTATCTTATTTAAAAGATAAACTTTGAATT-TATCAAAAACGGTGGA
387 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG-ATTCTATCAAAAACGGTGGA
2320335 AAGAAAAGCTTTTCTTGCGACACCA
451 AAGAAAAGCTTTTCTTGCGACACCA
* ** * * *
2320360 AAGCATCAATGTCATGTATTCTAATGAAGAGAATGCATTTTTGGATCCTAATCCTGAAAAGGATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* ** * * * *
2320425 GGGATTGTTTTGAGAATCGATGCCTGCCTTATTTAAGGGTTGAACATTGATTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * * * * *
2320490 AGTAACGAAAAGATTTTCATGCAAAA-AAAGTCATTAATATCATTAATCTTAATTAGGGGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* *
2320554 GTTTATAGTGCCAAATCACAATATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * ** * *
2320619 GGCATGAAGTTAGACCATACAAAAATTGGTGGGAAAAAAAAGCCTTTCTTGCAAAACGAAAGCAC
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGG---AAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * *
2320684 CAATATCATGTATCCTAATTAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGAGAAT
323 CAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
* * * *
2320749 AGTATGGGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGTAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
* *
2320814 GAAAAGCTTTTCCTACGACACCA
453 GAAAAGCTTTTCTTGCGACACCA
* * * * *
2320837 AAGCATCAATGTCATGTATTCTAATGAAGAAAATGTGTTTTTAGATCCCAATCCTGAAAAGTATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* ** * * * *
2320902 GGGATTGTTTTGATAATCGACGCTTGCCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * *
2320967 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* * * * * *
2321032 GTTTATAGTGTCTAATCACAAAGTAAATGAAGATCAATA-TCGGAATCCATGTTTGGCTTATTTG
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACT-AGAATCCACGTTTGGCTCATTTG
* * **
2321096 AGGCACGAACATAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTC
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACC
* * * * ** * *** *
2321161 AATATCTTGTACCCTTATAAGAAGACTACATTTATGGTGCCTAATCCCAAAAAGAATGGGAAATA
324 AATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATA
* * * **
2321226 GAATGAGTATTCATATTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAACGGCAGAAAG
389 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
*
2321291 AAAAGCTTTTTTTTGCGACACCA
454 AAAAGC-TTTTCTTGCGACACCA
* *
2321314 AAGCATCATTGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAATAATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * *
2321379 GAGACTGTTACGAGAATCGATGCTTGTCTTA-TTAAGGGGATGAACATTAATATTATGTAAAATA
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGGATGAACTTTGATTTTAAGGAAAATA
* * * *
2321443 AGGCAAAGAAAATATTTCCACGCAAAAAAAAATCATCAATATCAATT-ATCTTAATGAGGAGAAT
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC-ATTAATCTTAATGAGGAGAAT
* * * * *
2321507 TTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATTCTAAAATCCATGTTTGGCTCATTC
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTT
* * * *
2321572 GTGGTACGAACTTAAACTTTACAAAAATTGG-GAGAAAAAGCCTTTCTTGCGAAACCAAAGCACC
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * ** * * *
2321636 AATATCCTGTATCCTTATGAGAAGACTACATTTATGGTGCCTAATCCTGAAACA-AATGGGGATT
324 AATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAA-AGAATGGGGAAT
*
2321700 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
*
2321765 GAAAAGCTTTTCTTACGACACCA
453 GAAAAGCTTTTCTTGCGACACCA
* * * *
2321788 AAGCATCAATGTCTTGCATCCGAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * *
2321853 GAGATTGTTACAAGAATCGATGCTTGCCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * *
2321918 TGCAAAGAAAAGATTTCCATACAAAAG-AAA--ATC---AT--TT-ATCCTAATGAGGAGAATCT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* *
2321974 GTTTATAGTGCCTAACCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCAATTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
** * * * *
2322039 GATACGAACTTAGACTTTACAAAAATTTGTCGGAAGAAAGGCTTTCTTGCGAAACCAAAGCACCG
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCA
* * * *
2322104 ATATTGTGTATCCTAATGAGAAGTCTATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAG
325 ATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG
* * * *
2322169 TATGAGTATTCATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGA
390 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
*
2322234 AAAGCTTTTCTTGCGACACAA
455 AAAGCTTTTCTTGCGACACCA
* * *
2322255 AAGCATCAATGTCATGTATCCTAAAGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * *
2322320 GAGATTGTTACTAGAATTGATGCTTGTCTTATTTAAAGGATAAAGTTTGATTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * *
2322385 GGGAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTAATCATAACGAGGAGAATAT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
*
2322450 GTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGC
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTG-
* * * *
2322515 A-GCATGAACTTAGACTTTGCAAAAATTAGTGGGAGAAAAGCCTTTCTTGTGAAACCAAAGCACC
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCACC
* * *
2322579 AGTATCGTGTATCCTAAAGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATAGGGAATA
324 AATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATA
* * * * *
2322644 GTTTGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGAAAAG
389 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* *
2322709 AAAAGCTTTTCTTGCAACACGA
454 AAAAGCTTTTCTTGCGACACCA
* * ** *
2322731 AAGCTTCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGATCGTAATCTTGAAAAGAACG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * *
2322796 GAGATTGTTATGAGAATCGATGGTTGTCTTATTTAAGGGATTAACTTTGATATTAAGTAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * *
2322861 GGCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* * * * *
2322926 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTGTGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * * *
2322991 GGCACAAACTTGGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACAAAAGCACCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCA
* * * *
2323056 ATATCGTGTATCCCAATGAAAAGACTATGTTCAAGGTGCCTAATCTTGAAAAGAATGAGGAATAG
325 ATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG
* * *
2323121 CATGAGTATTCACGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAG-
390 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
2323185 AAAGCTTTTCTTGCGACACCA
455 AAAGCTTTTCTTGCGACACCA
* * *
2323206 AAGCATCAATGTCATGTATCCTAATGAAGAG-ATGTGTCTTTGCATCCCAATCTTGAAAAAAATG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * *
2323270 GAGAATGTCACAAGAATTGATGCTTGCCTTATTTAAGGGAT-AACTTTGTTTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* *
2323334 GGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* *
2323399 GTTTATAGTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCACATTTGGCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
* * * **
2323464 GGTACGAACTTAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCGTCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCA
** * ** **
2323529 ATATCGTGTATCCTTAA-GAGAAGACTACATTTATGGTGCCTAATCCCGAAAACTATGGGGAATA
325 ATATCGTGTATCC-TAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATA
* * * *
2323593 GCATGAGTATTCATATTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAG
389 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
** *
2323658 AAAAGC--CACAT--GACACCA
454 AAAAGCTTTTCTTGCGACACCA
* * * *
2323676 AAGCTTTAATGTCATGTATCCTAATGAGGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATT
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
*
2323741 GAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * *
2323806 GGCAAAGAAAAGAATTCCATGGAATAGAAAATCATCAATATCATTAAGCTTAATAAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
* * * *
2323871 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
** *
2323936 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG-CTCTTCTTGTAAAATCAAAGCACC
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCT-TTCTTGCGAAACCAAAGCACC
* * **
2324000 AATATTGTGTATCCTAATGAGAAGGCTATG-TT----TGCCTAATCTTGAAAAGAATGCAAAATA
324 AATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATG-----GG
* *
2324060 GTATGAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGT
384 GAAT-AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* *
2324125 GGAAAGAAAAGCTTTTCTGGTGACACCA
448 GGAAAGAAAAGCTTTTCTTGCGACACCA
*
2324153 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * * *
2324218 GAG-TTCATTATGAGAATCAATGCTTATCTTATTTATGGGATGAACTTTGATTTTAAGGAAAGTA
66 GAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * * *
2324282 GGGCAAAGTAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTAATTTTAATGAGTAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATG
* ** * * * * *
2324347 TATTTATTTTTCCTAATCACAAAATGAATGAATATCAATACTGGAATCCACGTTTGCCTCGTTTG
195 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTG
* * * * **
2324412 AGGCACGAACTTAGACTTTACATAATTTGGTGGGAAATAAAGCCTTTCTTGTGAATCCAAAGTGC
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AA-AAAGCCTTTCTTGCGAAACCAAAGCAC
* * * *
2324477 CAATATCATGTGTTCTAATGAGAAGACTATGTTTAAGGTGCCTCATCTTGAAAAGAATGGGGAAT
323 CAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAT
* * * *
2324542 AGTATGAGTATTCATGTTGGTCTTATTTAAGAGACAAGCTTTGATTTTATCAAAAACAGTGGAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
2324607 GAAAAGCTTTT-TCTGCGACACCA
453 GAAAAGCTTTTCT-TGCGACACCA
* *
2324630 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
* * * * *
2324695 GAGATTATTGCGAGAATCGATTCTTTTCTTATTTAAGGGATGAACTTTGATTTTGAA-GAATATA
66 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATA
* * *
2324759 GGGTAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAAAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATG
** * *
2324824 TGTTTATAGTG-CTAATCACAAAATGAATGATTATCAAAACTAGAATCCACGTTTGCCTCATTTG
195 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTG
* * * * *
2324888 AGGCACGAACTTAGACTTTAC-AAATTTGGTGGTAAAAAGCTTTTCTTGCGAACCCAAAGCACTA
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCA
* * *
2324952 ATATCGAGTATCCTAATGAGAAGACTAAGTTTATA-GTGCCTAATCTTGAAAAAAATGGGGAATA
325 ATATCGTGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAATA
* * * *
2325016 GTATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTT-ATTTCTATAAAAAACAGTGGAAA
389 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGAAA
*
2325080 -AAAAGCTGTTCTTGCGACACCA
453 GAAAAGCTTTTCTTGCGACACCA
* * *
2325102 AAGCATCAATGTCTTGTATCATAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAGTG
1 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
2325167 GAGAT
66 GAGAT
2325172 GTTGTGAATT
Statistics
Matches: 7879, Mismatches: 1109, Indels: 210
0.86 0.12 0.02
Matches are distributed among these distances:
465 103 0.01
466 4 0.00
467 318 0.04
468 5 0.00
470 38 0.00
471 74 0.01
472 301 0.04
473 584 0.07
474 936 0.12
475 1818 0.23
476 2029 0.26
477 1076 0.14
478 177 0.02
479 393 0.05
480 3 0.00
483 20 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTAATGAGGAGAATGT
GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAA
TATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
AAGCTTTTCTTGCGACACCA
Found at i:2318120 original size:159 final size:158
Alignment explanation
Indices: 2315636--2324326 Score: 1040
Period size: 159 Copynumber: 54.9 Consensus size: 158
2315626 CTAATGAACT
* * * * * ** * * *
2315636 AATGTGTTTTTGGAT-CCCAATCTTGAAAAGCATGGAGATTGTTATGAGAATCGATGCCTATCGT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCTT
** * * * *
2315700 ATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAA
64 ATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACAA
* * * **
2315764 AATCATCAATATCAT-TAATCTTAAGGAGGAG
128 AAGCATCAATATCATGT-ATCCTAACGAAAAG
* * * ** * * * * *** *
2315795 ATTGTGTTTATAGTGCCTAATC-ACAAAATGAACGAAGATCA-ATACTAGAATCCACATTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * * * * * *
2315858 CATTTGAGGCACGAACTTAGACT-TTACA-AAAATTGGTG-GAA-AAAAGCCTTTCTTGCAAAAC
63 TATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAAC
* * * *
2315919 CAAAGCACCAATATCATGTATCCTAATGAGAAG
126 AAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * ** ** * *
2315952 ACTATGTTTAAGGTGGCTAATCTTGAAAAGAATGGGGAATAG-TATGAGTATTCATGTTTGTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* * * * *
2316016 TTTTAAGAGACAAACTTTGAT-TCTATA-AAAAAAGGTAG-AAA-AAAGAGCTTTTCTTGCGACA
64 ATTTAAGGGACAAACTTTGATAT-TA-AGAAAATAGGT-GCAAAGAAA-AGCTTTTCTTGCAAAA
* * * *
2316077 CTAAAGCATCAATGTCATGTATCCTAATGAAGAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * * * * * *
2316111 AATGTGTTTTTGGAT-CCCTATCTTAAAAAGAGTAGAGATTA-TTACGAGAATTGATGCCTATCT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAGAA-TCATGCTTGTCT
* ** * ** * * *
2316174 AATTTAAGGGATGAACTTTGATATTAAGTAAAAAAGG-GCAAAGAAAAGAGTTCCATGCAAAA-G
63 TATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * * * **
2316237 AGATCATCAATAACAT-TAATCTTTATGAGGAG
127 AAAGCATCAATATCATGT-ATCCTAACGAAAAG
* * * ** * * *** *
2316269 AATATGTTTATAGTGCCTAATC-ACAAAATGAATGAAGAATA-ATACTAGAATCCACATTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAA-AATAGTTACAAGAAT-CATGCTTGTCT
* * * * * * * * *
2316332 CATTTGAGGCACAAACTTAGACTTTTCAA-AAATTTAGG-G-GAA-AAAAGCCTTTCTT-CTGAA
63 TATTTAAGGGACAAACTTTGA-TATT-AAGAAA-ATAGGTGCAAAGAAAAGCTTTTCTTGC-AAA
* * * ** * *
2316392 ACGAAAGCACCCATATTGTGTATCCTAATGAGAAG
124 ACAAAAGCATCAATATCATGTATCCTAACGAAAAG
** * * ** * *
2316427 ACTATGT-TTTA-GGTGCCTTATCTTGAAAAGAATGAGGAATAG-AATGAGTATTCATGTTTGTC
1 A--ATGTGTTTATGGTGCCCAATCTTGAAAAGAATGA-AAATAGTTACAAG-AATCATGCTTGTC
* ** ** * *
2316489 TT-TCTTAAGAGACAAACTTTGAT-TCTATCAAAA-ACGGTGGGAA-AAAAGCTTTTCTTGCGAC
62 TTAT-TTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAA
* * * * * * **
2316550 ACCAAAGCAACACTGTCTTGTATCCTAATGAAGGG
124 ACAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * * *
2316585 AGA-GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCTATGCTTCTCTT
1 A-ATGTGTTTATGGTGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCTT
* * ** * * ** * *
2316649 GTTTTAGGGATGAACTTTGATTTTAAAGAAAATACG-GCAAAG-AAAGGATTTCGATGCAAAAGA
64 ATTTAAGGGACAAACTTTGATATT-AAGAAAATAGGTGCAAAGAAAAGCTTTTC-TTGCAAAACA
* * ** * * **
2316712 AAATCATCCATATCATAAATCTTAATGAGGCA-
127 AAAGCATCAATATCATGTATCCTAACGA-AAAG
** * ** * * * * *
2316744 AATGTGTTTATAATGCCTAATC-ACAAAATAAATGAAGATCA-TTGCTAGAATCTATGTTTGTCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAATC-ATGCTTGTCT
* * * * * ** ** *** *
2316807 CATTTGAGGCACGAACTTAGACT-TTACCAAAATTTGTGGGCA-AAAAGCCTTTCTTGCAAAAGC
63 TATTTAAGGGACAAACTTTGA-TATTAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAA-C
* * * * * *
2316870 -AATGCACCATTATCGTGTATCCTAATGAGAAG
126 AAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * ** * * *
2316902 ACTATGTTTACGGTGCCTAATCTTGAAAAGAATGAGGAATAG-TATGAGTATTCATGTTTGTCAT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAATGA-AAATAGTTACAAG-AATCATGCTTGTCTT
* ** * * * *
2316966 ATTTAAGAGACAAACTTTGAT-TCTATCAAAA-ACGGTGAAAAGAAAAGCTTTTCTTGCGACACG
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2317029 AAAGCATCAATGTCATGCATCCTAAAGAAAAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
** * * * *
2317061 AATGTGTTT-TTTTATCCTAATCTTGAAAAGAAT-AGAAATTGTTACGAGAATCAATGCTTGTCT
1 AATGTGTTTATGGT-GCCCAATCTTGAAAAGAATGA-AAATAGTTACAAGAATC-ATGCTTGTCT
* ** * * * * * *
2317124 TATTTAAGGAATGAACTTTGATATTAAGTAAAATTGG-GCAAAGAAAAGATTTCCATGCTAAAGA
63 TATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * **
2317188 AAACCATCAATATCATTTATCCAAATGAGGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * ** * * * * * * *
2317220 AATATGTTTATAGTGCCTAATC-ACAAAATGAAAGAAGATCA-ATACTAGAATCCACGTTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * ** * * ** * * *
2317283 TATTTGAGGCACGGA-TTTAGACT-TTACGAAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAAAC
63 TATTTAAGGGACAAACTTT-GA-TATTAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTG-CAAAA
* * * * *
2317345 CAAAA-CATCAATATCGTGCATCCTTATGAGAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* *** * * ** * ** * **
2317378 ACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGAATAG-CATGAGTATTCATTTTTGTCTTA
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAATGAAAATAGTTACAAG-AATCATGCTTGTCTTA
* * ** * * * * *
2317442 TTTAAGAGATAAACTTTGAT-TCTATCAAAA-ACGGTGGAAGGAAAAGCTTTTCTTGCGACACCA
65 TTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACAA
* * * * **
2317505 AAGCATCAATGTCACGTATTCTAATGAAGTG
128 AAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * ** * *** *
2317536 AATATGTTTTTGGAT-CCCAATCCTAAAAAGGATG-GGATTGTTTTGAGAATCGATGCTT-ACTT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTC-T
** * * * * * *
2317598 TATTTAAGGGATGAACATTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAAA
63 TATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * ** ***
2317662 AAATCATCAGTATCCT-TAATCTTAATTAGGGG
127 AAAGCATCAATATCATGT-ATCCTAACGAAAAG
* * ** * * * ** * *
2317694 AATGTGTTTGTTGTGCCCAATC-ACAAAACCAATGAAGATCA-ATACTTGAATCCATGTTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * * * ** *
2317757 CT-CTTAAGGCACGAA-TTTAGACCA-TACA-AAAATTGGTGGGAA-AAAAGC-TTCCTTGCAAA
63 -TATTTAAGGGACAAACTTT-GA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAA
* * * * *
2317816 ACCAAAGCACCAATATCATGTACCCTAATGAGAAG
124 ACAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * ** ** * * *
2317851 ACTGTGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG-TATGAGTATTCACGTTTG-CAT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTC-T
* * * ** * * *
2317914 TTTTTAAGAGACAAACTCTGAT-TCTATCAAGAA-CGGTAG-AAAGAAAAGCTTTTCTTGCGACA
63 TATTTAAGGGACAAACTTTGATAT-TAAGAA-AATAGGT-GCAAAGAAAAGCTTTTCTTGCAAAA
** *
2317976 CCTAAGCATCAATGTCATGTATCCTAACGAAAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* *
2318010 AATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAAAAT-GTTACCAGAATCGATGCTTGTCT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAGAATC-ATGCTTGTCT
** * * *
2318073 TATTTAAGGGATGAACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAACA
63 TATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
** * * * * *
2318137 AAATTATCATTATCATTTATCCAAATGAGAAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2318169 AATGTGTTTATAGTGCCTAATC--AAAAAGTGAATGAAGATCA-TTACTAGAATCTATGTTTGTC
1 AATGTGTTTATGGTGCCCAATCTTGAAAA--GAATGAAAAT-AGTTACAAGAATC-ATGCTTGTC
* * * * * * ** * *
2318231 TCATTTGAGGCACGAACTTGGACT-TTACA-AAAATTGGTGGTACG-AAAGCTTTTCTTGCGAAA
62 TTATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAA
* *
2318293 CAAAAGCACCAATATCATGTATCCTAACGAGAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * ** * * ** * *
2318327 ACA-ATGTTTAAGGTGCCTAATCTTGAAAAGACCGGGAAATAG-CATGAGTATTCATGTTTGTCT
1 A-ATGTGTTTATGGTGCCCAATCTTGAAAAGA-ATGAAAATAGTTACAAG-AATCATGCTTGTCT
* * * * * *
2318390 TATTTAAGAGACAAACTTTGATTTTATGAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCAACACG
63 TATTTAAGGGACAAACTTTGATATTAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * *
2318454 AAATCATCAATGTCATGTATCCTAATGAAGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * *
2318486 AATGTGTTTTTCGAT-CCCAATCTTGAAAAGAAT-AAAGATTGTTACAAGAATCAATGCTTGTCT
1 AATGTGTTTAT-GGTGCCCAATCTTGAAAAGAATGAAA-ATAGTTACAAGAATC-ATGCTTGTCT
* * * * *
2318549 TATTTAAGGGATAAACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAAA
63 TATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * ** ** **
2318613 AAATCATCAACATAAAT-AATGTTATTGAGGAG
127 AAAGCATCAATAT-CATGTATCCTAACGAAAAG
* * * ** * * * *
2318645 ATTGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCA-ATACTAGAATCCATGCTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * ** * * * * * ** * ** *
2318708 CATTTGAGCCACGAACTTAGACTTTTCA-AAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAAACC
63 TATTTAAGGGACAAACTTTGA-TATTAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * *
2318771 AAAGCACCAATATCGTGTATCTTAAAGAGAAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
** * * * * * ** ** * *
2318803 TTTATGTTTAAGGTGCCTAACCTTCAAAAGAATGGGGAATAG-TATGAGTATTCATGTTTGTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* * ** * * * *
2318867 ATTTAAGAGACGAACTTTGAT-TCTATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2318930 AAAGCATCAATGTCATGTATCCTAATGAAGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2318962 AATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTA-TT-CGAGAATAGATGCTTGCCT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAGAAT-CATGCTTGTCT
* ** * * * * * **
2319024 TATTTAGGGGATGAACATTGATATTATGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAGGA
63 TATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * **
2319088 AAATCATCAATATCATTTATCTTAATGAGGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * ** * * *
2319120 AATTTGGTTATAGTGCCTC-ATC-ACAAAATGAATGAAGATCA---ACATTAGAATCCACGTTTG
1 AATGTGTTTATGGTGCC-CAATCTTGAAAA-GAATGAAAAT-AGTTACA--AGAAT-CATGCTTG
* * ** * ** * * ** * **
2319180 GCTCATTTGTGGTATGAACTTAGACT-TTACA-AAAATTGGTGGGAAG-AAAGCCTTTCTTGTGA
60 TCTTATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAA
* * * * * *
2319242 AACCAAAGCAGCAATATCGTGTA--CAAGTATGAGAAG
123 AACAAAAGCATCAATATCATGTATCCTA--ACGAAAAG
* *** * ** * ** ** * * *
2319278 ACTACATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAG-TATGAGTTTTTATGTTTGTCCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* * * ** * ** * *
2319342 ACTTAAGAGACAGACTTTGAT-TCTATCAAAA-ACGGTGGAAA-AAAAGCTTTTCTTGTGACACC
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * * **
2319404 AAAGCATCAATGTCTTGTATCTTAATGTAGGG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * * *
2319436 AATGTGTTTTTGGATTG--CAATCTTGAAAAGAATGGAGATTGTTTCTAGAATCGATGCTTATCT
1 AATGTGTTTATGG--TGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCT
* ** * * * * *
2319499 TATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGA
63 TATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * **
2319563 AAATCATCAATATCTTTTATCCTAATGAGGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * ** * * ** * *
2319595 AATGCGTTTATAGTGCCTAATC-ACAAAATGAATGAATATCA-ATACTGGAATCCATGTTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * * * *
2319658 CT-TTTGAGGCACAAACTTAGACT-TTAAAAAAATTGGT-TAGAA-AAAAGCTTTTCTTG-AGAA
63 -TATTTAAGGGACAAACTTTGA-TATTAAGAAAATAGGTGCA-AAGAAAAGCTTTTCTTGCA-AA
* * * * *
2319718 ACCAAAGCACCCATATCATGTATCCTAATGAGAAG
124 ACAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *** * * * *
2319753 ACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGAGGAATAG-TATGGGTATTCAAGTTTTTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAATGA-AAATAGTTACAAG-AATCATGCTTGTCTT
* * * * * *
2319817 TTTTAAGAGACAAACTTTGAT-TCTATA-AAAA-ACGGTAG-AAATAAAAGCTTTCCTTGCGACA
64 ATTTAAGGGACAAACTTTGATAT-TA-AGAAAATA-GGT-GCAAAGAAAAGCTTTTCTTGCAAAA
** * * * *
2319878 TGAAAGCATCAATGTCATGTATCTTAATGAAGAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2319912 AATGTGTTT-TCGAAT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTAATGCTTGTCT
1 AATGTGTTTAT-G-GTGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAA-TCATGCTTGTCT
** * *
2319975 TATTTAACAGATAAACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAG-ATTTCTATGCAAAAA
63 TATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCT-TGC---AA
* * * * ** **
2320038 AAAAAAATCATCAATAACAT-TAATCTTAGTGAGGAG
123 AACAAAAGCATCAATATCATGT-ATCCTAACGAAAAG
* * * * * * * * * * *
2320074 AATATGTTTATAGTGCCTAATCAT-AAAAGGAAAGAAGATCA-ATACTAGAATCCACGTTTGCCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * ** * * * * *
2320137 CATTTGAGGTATGAA-TTTAGACT-TTACGAAAATTGGTTG-GAAG-AAAGCCTTTCTTGTGAAA
63 TATTTAAGGGACAAACTTT-GA-TATTAAGAAAATAGG-TGCAAAGAAAAGCTTTTCTTG-CAAA
* ** * * * *
2320198 CCAAAA-CATCAATATTGTGTACCCTTATGAGAAG
124 ACAAAAGCATCAATATCATGTATCCTAACGAAAAG
* *** * * * ** * ** *
2320232 ACTAAATTTGTGGTGCCTAATCTTGAAAAGAATGAGGAATAG-TATGAGTATTCATTTTTATCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAATGA-AAATAGTTACAAG-AATCATGCTTGTCTT
** * ** * * * *
2320296 ATTTAAAAGATAAACTTTGA-ATTTATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
64 ATTTAAGGGACAAACTTTGATA-TTAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * *
2320359 AAAGCATCAATGTCATGTATTCTAATGAAGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
** * * * * *** * *** * *
2320391 AATGCATTTTTGGAT-CCTAATCCTGAAAAGGATGGGGATTGTTTTGAGAATCGATGCCTGCCTT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCTT
*** * * * * *
2320455 ATTTAAGGGTTGAACATTGATTTTAAGGAAAATAGAGT--AACGAAAAGATTTTCATGC-AAA-A
64 ATTTAAGGGACAAACTTTGATATTAA-GAAAATAG-GTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * ** ***
2320516 AAAGTCATTAATATCAT-TAATCTTAATTAGGGG
127 AAAG-CATCAATATCATGT-ATCCTAACGAAAAG
* * ** * * * * * * *
2320549 AATGTGTTTATAGTGCCAAATC-ACAATATGAATGAAGATCA-ATACTAGAATCCACGTTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAA-AAGAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * ** * * * * * * *
2320612 CATTTGAGGCATGAAGTTAGACCA-TACA-AAAATTGGTGGGAAAAAAAAGCCTTTCTTGCAAAA
63 TATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGT-GCAAAGAAAAGCTTTTCTTGCAAAA
* * ** *
2320675 CGAAAGCACCAATATCATGTATCCTAATTAGAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *** * * *
2320709 ACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGAGAATAG-TATGGGTATTCATGTTTGTCAT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* ** * * * * * * *
2320773 ATTTAAGAGACAAACTTTGAT-TCTATCAAAA-ACGATGTAAAGAAAAGCTTTTCCTACGACACC
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2320836 AAAGCATCAATGTCATGTATTCTAATGAAGAA-
127 AAAGCATCAATATCATGTATCCTAACGAA-AAG
* * * * *** * *** * * *
2320868 AATGTGTTTTTAGAT-CCCAATCCTGAAAAGTATGGGGATTGTTTTGATAATCGACGCTTGCCTT
1 AATGTGTTTAT-GGTGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCTT
* ** * * * *
2320932 ATTTAAGTGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAA
64 ATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACAA
* * * * **
2320996 AATCATTAATATCATTTATCCTAATGAGGAG
128 AAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * * *
2321027 AATGTGTTTATAGTGTCTAATC---ACAAAGTAAATGAAGATCA-ATATC-GGAATCCATGTTTG
1 AATGTGTTTATGGTGCCCAATCTTGA-AAAG--AATGAAAAT-AGTTA-CAAGAAT-CATGCTTG
* * * * * * * * ** * *
2321087 GCTTATTTGAGGCACGAACATAGACT-TTACGAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAA
60 TCTTATTTAAGGGACAAACTTTGA-TATTAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAA
* * * * * *
2321150 ACCAAAGCGTCAATATCTTGTACCCTTA-TAAGAAG
124 ACAAAAGCATCAATATCATGTATCCTAACGAA-AAG
* *** * *** * * ** * **
2321185 ACTACATTTATGGTGCCTAATCCCAAAAAGAATGGGAAATAG-AATGAGTATTCATATTTGTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* * ** * * * *
2321249 ATTTAAGAGTCAAACTTTGAT-TCTATCAAAA-ACG-GCAGAAAGAAAAGCTTTTTTTTGCGACA
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATAGGTGC--AAAGAAAAGC-TTTTCTTGCAAAA
* * * * *
2321311 CCAAAGCATCATTGTCATGTATCCTAATGAAGAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * *
2321345 AATGTGTTTTTGGAT-CCCAATCTTGAAAATAATGGAGACT-GTTACGAGAATCGATGCTTGTCT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAGAATC-ATGCTTGTCT
** * * * * ** * ** *
2321408 TA-TTAAGGGGATGAACATTAATATTATGTAAAATAAG-GCAAAGAAAATATTTCCACGCAAAAA
63 TATTTAA-GGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAAC
* * * **
2321471 AAAATCATCAATATCAAT-TATCTTAATGAGGAG
126 AAAAGCATCAATATC-ATGTATCCTAACGAAAAG
* * * ** * * * *
2321504 AATTTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCAATT-CTAA-AATCCATGTTTGGC
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTAC-AAGAAT-CATGCTTGTC
* *** * * ** * * * *
2321566 TCATTCGTGGTACGAACTTAAACT-TTACA-AAAATTGG-G-AGA-AAAAGCCTTTCTTGCGAAA
62 TTATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAA
* * * * * *
2321626 CCAAAGCACCAATATCCTGTATCCTTATGAGAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* *** * * ** * ** * *
2321660 ACTACATTTATGGTGCCTAATCCTGAAACA-AATGGGGATTAG-TATGAGTATTCATGTTTGTCT
1 AATGTGTTTATGGTGCCCAATCTTGAAA-AGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCT
* * * * *
2321723 TATTTAAGAGACAAACTTTGAT-TCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTACGACA
63 TATTTAAGGGACAAACTTTGATAT-TA--AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAA
* * * * * * *
2321785 CCAAAGCATCAATGTCTTGCATCCGAATGAAGAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2321819 AATGTGTTTTTGGAT-CCCAATCTTGAAAAGGATGGAGATTGTTACAAGAATCGATGCTTGCCTT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCTT
* ** * * *
2321883 ATTTAAGTGATGAACTTTGATTTTAAGGAAAATA-GTGCAAAGAAAAG-ATTTC---C-ATACAA
64 ATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACAA
* * **
2321942 AAG-A--AA-ATCATTTATCCTAATGAGGAG
128 AAGCATCAATATCATGTATCCTAACGAAAAG
* * * *** * * * * * *
2321969 AATCTGTTTATAGTGCCTAA-CCACAAAATGAATGAAGATCA-ATACTAGAATCCACGTTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * ** * * ** * * *
2322032 CAATTGAGATACGAACTTAGACT-TTACA-AAAATTTGT-CGGAAGAAAGGC-TTTCTTGCGAAA
63 TATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGC-AAAGAAAAGCTTTTCTTGCAAAA
* * * ** * *
2322093 CCAAAGCACCGATATTGTGTATCCTAATGAGAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
** * * * ** ** * **
2322127 TCTATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAG-TATGAGTATTCATTTTTGTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
** * * * *
2322191 ATTTAAAAGACAAACTTTGAT-TCTATAAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACA
64 ATTTAAGGGACAAACTTTGATAT-TA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2322254 AAAGCATCAATGTCATGTATCCTAAAGAAGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2322286 AATGTGTTTTTGGAT-CCTAATCTTGAAAAGAAT-AGAGATTGTTACTAGAATTGATGCTTGTCT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGA-AAATAGTTACAAGAA-TCATGCTTGTCT
* * * * * * * *
2322349 TATTTAAAGGATAAAGTTTGATTTTAAGGAAAATAGG-GGAAAGAAAAGATTTCCATGCAAAACA
63 TATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * **
2322413 AAATCATCAATATCAT-TAATCATAACGAGGAG
127 AAAGCATCAATATCATGT-ATCCTAACGAAAAG
* * * ** * * * * * * *
2322445 AATATGTTTATAGTGCCTAATC-ACAAAATGAAAGAAGATCA-ATACTAGAATCCACGTTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * ** * * ** * **
2322508 CATTTGCA-GCATGAACTTAGACT-TTGCAA-AAATTA-GTG-GGAGAAAAGCCTTTCTTGTGAA
63 TATTT-AAGGGACAAACTTTGA-TATT--AAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAA
* * * * * *
2322568 ACCAAAGCACCAGTATCGTGTATCCTAAAGAGAAG
124 ACAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * ** ** * * *
2322603 ACTATGTTTAAGGTGCCTAATCTTGAAAAGAATAGGGAATAGTT-TGAGTATTCATGTTTGCCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* * * * * *
2322667 ATTTAAGAGACAAACTTTGACTCTATCA-AAAAT-GGTGAAAAGAAAAGCTTTTCTTGCAACACG
64 ATTTAAGGGACAAACTTTGA-TAT-TAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2322730 AAAGCTTCAATGTCATGTATCCTAATGAAAAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* ** * * * * ** *
2322762 AATGTGTTTTTGGAT-CGTAATCTTGAAAAGAACGGAGATTGTTATGAGAATCGATGGTTGTCTT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATC-ATGCTTGTCTT
** * * *
2322826 ATTTAAGGGATTAACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAACAA
64 ATTTAAGGGACAAACTTTGATATTAAG-AAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACAA
* * * **
2322890 AATCATCAATATCATTTATCCTAATGAGGAG
128 AAGCATCAATATCATGTATCCTAACGAAAAG
* * ** * *
2322921 AATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCA-TTACTAGAATCAATG-TGTGTC
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAATC-ATGCT-TGTC
* * * * * ** * *
2322983 TCATTTGAGGCACAAACTTGGACT-TTACA-AAAATTGGTGGGAAG-AAAGCATTTCTTGCGAAA
62 TTATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAA
* * * *
2323045 CAAAAGCACCAATATCGTGTATCCCAATGAAAAG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * * * ** * * *
2323079 ACTATGTTCAAGGTGCCTAATCTTGAAAAGAATGAGGAATAG-CATGAGTATTCACGTTTGTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAATGA-AAATAGTTACAAG-AATCATGCTTGTCTT
* * ** * * * *
2323143 ATTTAAGAGATAAACTTTGAT-TCTATCAAAA-ACGGTGGAAAG-AAAGCTTTTCTTGCGACACC
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2323205 AAAGCATCAATGTCATGTATCCTAATGAAGAG
127 AAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2323237 -ATGTGTCTT-TGCAT-CCCAATCTTGAAAAAAATGGAGAAT-GTCACAAGAATTGATGCTTGCC
1 AATGTGT-TTATG-GTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAGAA-TCATGCTTGTC
* * * * * * *
2323298 TTATTTAAGGGA-TAACTTTGTTTTTAAGGAAAATAGG-GTAAAGAAAAGATTTTCATGCAAAAG
62 TTATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAAC
* * * **
2323361 AAAATCATCAATATCAT-TAATCTTAATGAGGAG
126 AAAAGCATCAATATCATGT-ATCCTAACGAAAAG
* * * * * * *** *
2323394 AATGTGTTTATAGTGCCTAATCAT-AAAATGAATGAAGATCA-ATACTAGAATCCACATTTGGCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAAT-CATGCTTGTCT
* * * * * * * ** * * * *
2323457 CATTTGAGGTACGAACTTAGACT-TTACGAAAATTGGTGGGAAG-AAAGCCTTTCTTACGAAACC
63 TATTTAAGGGACAAACTTTGA-TATTAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * *
2323520 AAAGCGTCAATATCGTGTATCCTTAA-GAGAAG
127 AAAGCATCAATATCATGTATCC-TAACGAAAAG
* *** * ** ** ** * ** * **
2323552 ACTACATTTATGGTGCCTAATCCCGAAAACTATGGGGAATAG-CATGAGTATTCATATTTGTCTT
1 AATGTGTTTATGGTGCCCAATCTTGAAAAGAAT-GAAAATAGTTACAAG-AATCATGCTTGTCTT
* * ** ** * *
2323616 TTTTAAGAGACAAACTTTGAT-TCTATCAAAA-ACGGTAG-AAAGAAAAGC--CACATG--ACAC
64 ATTTAAGGGACAAACTTTGATAT-TAAGAAAATA-GGT-GCAAAGAAAAGCTTTTCTTGCAAAAC
* * * * * **
2323674 CAAAGCTTTAATGTCATGTATCCTAATGAGGAG
126 AAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * **
2323707 AATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATTG-AGATTGTTATGAGAATCGATGCTTGTCT
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAA-TGAAAATAGTTACAAGAATC-ATGCTTGTCT
** * ** * * * * *
2323770 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGAATTCCATGGAATAGA
63 TATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACA
* * * * *
2323834 AAATCATCAATATCAT-TAAGCTTAA-TAAGGAG
127 AAAGCATCAATATCATGT-ATCCTAACGAA-AAG
* * ** * * *
2323866 AATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCA-TTACTAGAATCTATGTTTGTCT
1 AATGTGTTTATGGTGCCCAATCTTGAAAA-GAATGAAAAT-AGTTACAAGAATC-ATGCTTGTCT
* * * * * * ** * *
2323929 CATTTGAGGCACGAACTTAGACT-TTACA-AAAATTGGTGGGAA-AAAAGCTCTTCTTGTAAAAT
63 TATTTAAGGGACAAACTTTGA-TATTA-AGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAA-
* ** *
2323991 C-AAAGCACCAATATTGTGTATCCTAATG---AG
125 CAAAAGCATCAATATCATGTATCCTAACGAAAAG
* * * * * *
2324021 AA-G-G-CTATGTTTGCCTAATCTTGAAAAGAATGCAAAATAGTATGAGTATGAGTATTCATGTT
1 AATGTGTTTATG-GTGCCCAATCTTGAAAAGAATG-AAAATAGT-T-A-CA--AG-AATCATGCT
* ** * * * **
2324083 TGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTGGTG
58 TGTCTTATTTAAGGGACAAACTTTGATAT-TAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCA
* * * * *
2324147 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG
122 AAACAAAAGCATCAATATCATGTATCCTAACGAAAAG
* ** ** *
2324184 AATGTGTTTTTGGAT-CCCAATCTTGAAAAGAAT-AGAGTTCA-TTATGAGAATCAATGCTTATC
1 AATGTGTTTATGG-TGCCCAATCTTGAAAAGAATGA-AAAT-AGTTACAAGAATC-ATGCTTGTC
* ** * * * * ** *
2324246 TTATTTATGGGATGAACTTTGATTTTAAGGAAAGTAGG-GCAAAGTAAAGATTTTCAAGCAAAAG
62 TTATTTAAGGGACAAACTTTGATATTAA-GAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAAC
*
2324310 AAAATCATCAATATCAT
126 AAAAGCATCAATATCAT
2324327 TAATTTTAAT
Statistics
Matches: 6049, Mismatches: 1953, Indels: 1060
0.67 0.22 0.12
Matches are distributed among these distances:
149 12 0.00
150 82 0.01
151 5 0.00
152 3 0.00
153 18 0.00
154 34 0.01
155 103 0.02
156 130 0.02
157 478 0.08
158 2125 0.35
159 2521 0.42
160 356 0.06
161 54 0.01
162 92 0.02
163 9 0.00
164 4 0.00
165 19 0.00
166 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
AATGTGTTTATGGTGCCCAATCTTGAAAAGAATGAAAATAGTTACAAGAATCATGCTTGTCTTAT
TTAAGGGACAAACTTTGATATTAAGAAAATAGGTGCAAAGAAAAGCTTTTCTTGCAAAACAAAAG
CATCAATATCATGTATCCTAACGAAAAG
Found at i:2323187 original size:317 final size:315
Alignment explanation
Indices: 2315871--2325141 Score: 1732
Period size: 317 Copynumber: 29.3 Consensus size: 315
2315861 TTGAGGCACG
* * * * *
2315871 AACTTAGACTTTA-CAAAAATTGGTGG-AA-AAAAGCCTTTCTTGCAAAACCAAAGCACCAATAT
1 AACTTTGA-TTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * * * ** * * *
2315933 CATGTATCCTAATGAGAAGACTATGTTTA-AGGTGGCTAATCTTGAAAAGAATGGGGAAT-AGTA
64 CATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGAG-ATCATTA
* ** * ** *
2315996 -TGAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGA-TTCTATAAAAAAAGGTAGAAA-A
127 CT-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTT-TACAAAAATTGGTGGAAAGA
* * * * * * * **
2316058 AAGAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
188 AA-AGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAAG
* * * * ** * * * * ** * * *
2316123 GATCCCT-ATCTTAAAAAGAGT-AGAGATTATTACGAGAATTGATGCCTATCTAATTTAAGGGAT
252 G-TGCCTAATCTTGAAAAGAATGAG-GAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGAT
*
2316186 G
315 A
* * ** * * * *
2316187 AACTTTGATATTAAGT-AAAAAAGG-GCAAAGAAAAGAGTTCCATGC-AAA-AGAGATCATCAAT
1 AACTTTGAT-TT-A-TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACA-AAAGCATCAAT
* * * *
2316248 AACAT-TAATCTTTATGAGGAGAATATGTTTATAGTGCCTAATC-ACAAAATGAAT-GAAGAAT-
62 ATCATGT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAG-AG-ATC
* ** * * * *
2316309 AATACTAGAATCCACATTTGGCTCATTTGAGGCACAAACTTAGACTTTTCAAAAATTTAGG-GG-
123 ATTACTAGAAT-CATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAA-TT-GGTGGA
* * * ** * *
2316372 AA-AAAAGCCTTTCTT-CTGAAACGAAAGCACCCATATTGTGTATCCTAATGAGAAGACTATGTT
184 AAGAAAAGCATTTCTTGC-GAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTT
* * * *
2316435 TTAGGTGCCTTATCTTGAAAAGAATGAGGAATAGAATGAGTATTCATGTTTGTCTT-TCTTAAGA
248 TAAGGTGCCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTAT-TTAAGA
*
2316499 GACA
312 GATA
* * * * * * *
2316503 AACTTTGATTCTATCAAAAACGGTGGGAA-AAAAGCTTTTCTTGCGACACCAAAGCAACACTGTC
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * * * * ** * **
2316567 TTGTATCCTAATGAAGG-GAGA-GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAC
65 ATGTATCCTAATG-AGGAGA-ATGTGTTTATAGTGCCTAATCTACAAAAGAATAGAGATCATTAC
* * * ** * ** * * ** *
2316630 GAGAATCTATGCTTCTCTTGTTTTAGGGATGAACTTTGATTTTAAAGAAAATACG-GCAAAG-AA
128 TAGAATC-ATGTTTGTC-TCATTTAAGGACAAACTTTGACTTTACA-AAAATTGGTGGAAAGAAA
* * * * * ** * ** *
2316693 AGGATTTCGATGCAAAAGAAAATCATCC-ATATCATAAATCTTAATGAGGCA-AATGTGTTTATA
190 AGCATTTC-TTGCGAAACAAAAGCA-CCAATATCATGTATCCTAATGA-AAAGAATATGTTTA-A
* ** * * * * * * *
2316756 -ATGCCTAATC-ACAAAATAAATGAAGATCATTGC-T-AG-AATCTATGTTTGTCTCATTTGAG-
251 GGTGCCTAATCTTGAAAA-GAATGAGGA--ATAGCATGAGTATTC-ACGTTTGTCTTATTTAAGA
**
2316815 GCACG
312 G-ATA
* * * * ** * * * * *
2316820 AACTTAGACTTTACCAAAATTTGTGGGCA-AAAAGCCTTTCTTGCAAAAGC-AATGCACCATTAT
1 AACTTTGA-TTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA-CAAAAGCATCAATAT
* * * * ** ** *
2316883 CGTGTATCCTAATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAAT-GAGGAAT-AGTA
64 CATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAAGAATAGA-G-ATCATTA
* * *
2316946 -TGAGTATTCATGTTTGTCAT-ATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGGTGAAAA
127 CT-AG-AATCATGTTTGTC-TCATTTAAG-GACAAACTTTGACTT-TA-CAAAAATTGGTGGAAA
* * * * * * * * *
2317007 GAAAAGCTTTTCTTGCGACACGAAAGCATCAATGTCATGCATCCTAAAGAAAAGAATGTGTTT-T
186 GAAAAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAA
** * * * * * * * *
2317071 TTTATCCTAATCTTGAAAAGAAT-AGAAATTGTTACGAG-AATCAATGCTTGTCTTATTTAAG-G
251 GGT-GCCTAATCTTGAAAAGAATGAGGAATAG-CATGAGTATTC-ACGTTTGTCTTATTTAAGAG
*
2317133 AATG
313 -ATA
* * * * * * * *
2317137 AACTTTGATATTAAGT-AAAATTGG-GCAAAGAAAAGATTTCCATGCTAAAGAAAACCATCAATA
1 AACTTTGAT-TT-A-TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * *
2317200 TCATTTATCCAAATGAGGAGAATATGTTTATAGTGCCTAATC-ACAAAATGAA-AGAAGATCAAT
63 TCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAG-AGATCATT
* * * * ** * *
2317263 ACTAGAATCCACGTTTGGCTTATTTGAGGCACGGA-TTTAGACTTTACGAAAATTGGTGGGAAG-
126 ACTAGAAT-CATGTTTGTCTCATTTAAGG-ACAAACTTT-GACTTTACAAAAATTGGTGGAAAGA
* * * * * * * * ** *
2317326 AAAGCCTTTCTTGTGAAACCAAAA-CATCAATATCGTGCATCCTTATGAGAAGACTACATTTATG
188 AAAGCATTTCTTGCGAAA-CAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAAG
* **
2317390 GTGCCTAATCCTGAAAAGAATG-GGAATAGCATGAGTATTCATTTTTGTCTTATTTAAGAGATA
252 GTGCCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
* * * * *
2317453 AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * * * * * * * * * ** *
2317518 ACGTATTCTAATGAAGTGAATATGTTTTTGGAT-CCCAATCCTA-AAAAGGAT-GGGATTGTT-T
65 ATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAAT-CTACAAAAGAATAGAGATCATTAC
* * * ** * * * *
2317579 TGAGAATCGATGCTT-ACTTTATTTAAGGGATGAACATTGATTTTA-AGGAAAATAGG-GCAAAG
128 T-AGAATC-ATGTTTGTC-TCATTTAA-GGACAAACTTTGACTTTACA--AAAATTGGTGGAAAG
* * * * * * * * * *** * *
2317641 AAAAG-ATTTCCATGCAAAAAAAAATCATCAGTATCCT-TAATCTTAATTAGGGGAATGTGTTTG
187 AAAAGCATTT-CTTGCGAAACAAAAGCACCAATATCATGT-ATCCTAATGAAAAGAATATGTTTA
** * ** * * * * * * *
2317704 TTGTGCCCAATC-ACAAAACCAATGAAGATCAATA-CTTGA--ATCCATGTTTGGCTCT-CTTAA
250 AGGTGCCTAATCTTGAAAA-GAATG-AG--GAATAGCATGAGTATTCACGTTTGTCT-TATTTAA
**
2317764 G-GCACG
310 GAG-ATA
** * * * * *
2317770 AA-TTTAGA-CCATACAAAAATTGGTGGGAA-AAAAGC-TTCCTTGCAAAACCAAAGCACCAATA
1 AACTTT-GATTTAT-CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * ** * * *
2317831 TCATGTACCCTAATGAGAAGACTGTGTTTA-AGGTGCCTAATCTTGAAAAGAATGGGGAAT-AGT
63 TCATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGAG-ATCATT
* * ** * * * *
2317894 A-TGAGTATTCACGTTTG-CATTTTTTAAGAGACAAACTCTGA-TTCTATCAAGAA-CGGTAGAA
126 ACT-AG-AATCATGTTTGTC-TCATTTAAG-GACAAACTTTGACTT-TA-CAAAAATTGGTGGAA
* * ** * * * * *
2317955 AGAAAAGCTTTTCTTGCGACACCTAAGCATCAATGTCATGTATCCTAACGAAAAGAATGTGTTTT
185 AGAAAAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTA
* * * * ** * * *
2318020 TGGAT-CCCAATCTTGAAAAGAAT--GGAAAATGTTACCAG-AATCGATGCTTGTCTTATTTAAG
250 AGG-TGCCTAATCTTGAAAAGAATGAGGAATA-G-CATGAGTATTC-ACGTTTGTCTTATTTAAG
* *
2318081 GGATG
311 AGATA
*** * * * * * ** *
2318086 AACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAACAAAATTATCATTAT
1 AACTTTGAT-TTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * *
2318150 CATTTATCCAAATGAGAAGAATGTGTTTATAGTGCCTAATC-A-AAAAGTGAAT-GAAGATCATT
64 CATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA--GAATAG-AGATCATT
* * * * *
2318212 ACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTGGTACG-A
126 ACTAGAATC-ATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAATTGGTGGAAAGAA
* * *
2318276 AAGCTTTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAACGAGAAGACA-ATGTTTAAGG
189 AAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGA-ATATGTTTAAGG
** * *
2318340 TGCCTAATCTTGAAAAGACCG-GGAAATAGCATGAGTATTCATGTTTGTCTTATTTAAGAGACA
253 TGCCTAATCTTGAAAAGAATGAGG-AATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
* * * * *
2318403 AACTTTGATTTTATGAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-AACACGAAATCATCAATGT
1 AACTTTGA-TTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-ACAAAAGCATCAATAT
* * * * ** * **
2318467 CATGTATCCTAATGAAGAGAATGTGTTTTTCGAT-CCCAATCTTGAAAAGAATAAAGATTGTTAC
64 CATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCTACAAAAGAATAGAGATCATTAC
* * * * * *
2318531 AAGAATCAATGCTTGTCTTATTTAAGGGATAAACTTTGA-TATTA-AGTAAAATAGG-GCAAAGA
128 TAGAATC-ATGTTTGTCTCATTTAA-GGACAAACTTTGACT-TTACA--AAAATTGGTGGAAAGA
* * * * * * * * ** * ** * *
2318593 AAAG-ATTTCCATGCAAAAAAAAATCATCAACATAAAT-AATGTTATTGAGGAGATTGTGTTTAT
188 AAAGCATTT-CTTGCGAAACAAAAGCACCAATAT-CATGTATCCTAATGAAAAGAATATGTTTA-
** * * * * * * * *
2318656 A-GTGCCTAATC-ACAAAATGAATGAAGATCAATA-C-T-AGAATCCATGCTTGGCTCATTTGAG
250 AGGTGCCTAATCTTGAAAA-GAATG-AG--GAATAGCATGAGTATTCACGTTTGTCTTATTTAAG
** **
2318716 CCACG
311 AGATA
* * * * * *
2318721 AACTTAGACTTT-TCAAAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAAACCAAAGCACCAATAT
1 AACTTTGA-TTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * * * ** * * * * * *
2318784 CGTGTATCTTAAAGAGAAGTTTATGTTTA-AGGTGCCTAACCTTCAAAAGAATGGGGAAT-AGTA
64 CATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGAG-ATCATTA
* * * *
2318847 -TGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGA-TTCTATCAAAAA-CGGTGGAAAG
127 CT-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTT-TA-CAAAAATTGGTGGAAAG
* * * * * * * **
2318909 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
187 AAAAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAAG
* * * * ** * * * * *
2318974 GAT-CCCAATCTTGAAAAGAATG-GAGATTA--TTCGAGAATAGATGCTTGCCTTATTTAGGGGA
252 G-TGCCTAATCTTGAAAAGAATGAG-GAATAGCAT-GAGTATTCACGTTTGTCTTATTTAAGAGA
*
2319035 TG
314 TA
* ** * * * * * *
2319037 AACATTGATATTATGTAAAATAGG-GCAAAGAAAAGATTTCCATGC-AAAGGAAAATCATCAATA
1 AACTTTGAT-TTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA-CAAAAGCATCAATA
* * * * * **
2319100 TCATTTATCTTAATGAGGAGAATTTGGTTATAGTGCCTCATC-ACAAAATGAAT-GAAGATCAAC
63 TCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAG-AGATCATT
* * * ** ** * *
2319163 ATTAGAATCCACGTTTGGCTCATTTGTGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAG-A
126 ACTAGAAT-CATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAATTGGTGGAAAGAA
* * * * * * * * ** *
2319227 AAGCCTTTCTTGTGAAACCAAAGCAGCAATATCGTGTA--CAAGTATGAGAAGACTACATTTATG
189 AAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTA--ATGAAAAGAATATGTTTAAG
* * * * * * * * *
2319290 GTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTTTTTATGTTTGTCCTACTTAAGAGACA
252 GTGCCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
* * * * * *
2319354 GACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * * * ** * ** *
2319418 TTGTATCTTAATGTAGG-GAATGTGTTTTTGGATTG-C-AATCTTGAAAAGAATGGAGATTGTTT
65 ATGTATCCTAATG-AGGAGAATGTGTTTAT--AGTGCCTAATCTACAAAAGAATAGAGATCATTA
* * * * * *
2319480 CTAGAATCGATGCTTATCTTATTTAAGGA-ATGAACTTTGATTTTA-AGGAAAATAGG-GCAAAG
127 CTAGAATC-ATGTTTGTCTCATTTAAGGACA--AACTTTGACTTTACA--AAAATTGGTGGAAAG
* * * * * * * ** **
2319542 AAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGCGTTTAT
187 AAAAGCATTT-CTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTA-
** ** * * * * *
2319606 A-GTGCCTAATC-ACAAAATGAATGA--ATATCAATACTG-GAATCCATGTTTGGCTCT-TTTGA
250 AGGTGCCTAATCTTGAAAA-GAATGAGGA-AT-AGCA-TGAGTATTCACGTTTGTCT-TATTTAA
*
2319665 G-GCACA
310 GAG-ATA
* * * * * * *
2319671 AACTTAGACTTTA-AAAAAATTGGT-TAGAA-AAAAGCTTTTCTTGAGAAACCAAAGCACCCATA
1 AACTTTGA-TTTATCAAAAA-TGGTGGA-AAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * ** *
2319733 TCATGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAAT-GAGGAAT-AG
63 TCATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGA-G-ATCAT
* * * * ** * ** *
2319795 TA-TGGGTATTCAAGTTTTTCTTTTTTAAGAGACAAACTTTGA-TTCTATAAAAAACGGTAGAAA
125 TACT-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTT-TACAAAAATTGGTGGAAA
* * ** * * * * * *
2319858 TAAAAGC-TTTCCTTGCGACATGAAAGCATCAATGTCATGTATCTTAATGAAGAGAATGTGTTTT
186 GAAAAGCATTT-CTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTA
* * * * * * * * * * *
2319922 CGAAT-CCCAATCTTGAAAAGAAT--GGAGATTGTTACGAGAATTAATGCTTGTCTTATTTAACA
250 AG-GTGCCTAATCTTGAAAAGAATGAGGA-ATAG-CATGAGTATTCACGTTTGTCTTATTTAAGA
2319984 GATA
312 GATA
*** * * * * *
2319988 AACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAG-ATTTCTATGCAAAAAAAAAAAATCATCA
1 AACTTTGAT-TTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCT-TGC---GAAACAAAAGCATCA
* * * * *
2320051 ATAACAT-TAATCTTAGTGAGGAGAATATGTTTATAGTGCCTAATCATA-AAAGGAA-AGAAGAT
60 ATATCATGT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-TACAAAAGAATAG-AGAT
* * * * ** *
2320113 CAATACTAGAATCCACGTTTGCCTCATTTGAGGTATGAA-TTTAGACTTTACGAAAATTGGTTGG
122 CATTACTAGAAT-CATGTTTGTCTCATTTAAGG-ACAAACTTT-GACTTTACAAAAATTGG-TGG
* * * ** * * * * **
2320177 -AAG-AAAGCCTTTCTTGTGAAACCAAAA-CATCAATATTGTGTACCCTTATGAGAAGACTAAAT
183 AAAGAAAAGCATTTCTTGCGAAA-CAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGT
** * ** * *
2320239 TTGTGGTGCCTAATCTTGAAAAGAATGAGGAATAGTATGAGTATTCATTTTTATCTTATTTAAAA
247 TTAAGGTGCCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGA
2320304 GATA
312 GATA
* * * *
2320308 AACTTTGAATTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTG-ATTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * ** * * * * * * ** *
2320373 ATGTATTCTAATGAAGAGAATGCATTTTTGGAT-CCTAATCCT-GAAAAGGATGGGGATTGTT-T
65 ATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAAT-CTACAAAAGAATAGAGATCATTAC
** * * *** * * * *
2320435 TGAGAATCGATGCCTGCCTTATTTAAGGGTTGAACATTGATTTTA-AGGAAAATAGAGT--AACG
128 T-AGAATC-ATGTTTGTCTCATTTAA-GGACAAACTTTGACTTTACA--AAAATTG-GTGGAAAG
* ** * * *** *
2320497 AAAAG-ATTTTCATGC-AAA-AAAAGTCATTAATATCAT-TAATCTTAATTAGGGGAATGTGTTT
187 AAAAGCA-TTTCTTGCGAAACAAAAG-CACCAATATCATGT-ATCCTAATGAAAAGAATATGTTT
* ** * * * * * * *
2320558 ATA-GTGCCAAATC-ACAATATGAATGAAGATCAATA-C-T-AGAATCCACGTTTGGCTCATTTG
249 A-AGGTGCCTAATCTTGAA-AAGAATG-AG--GAATAGCATGAGTATTCACGTTTGTCTTATTTA
*
2320618 AG-GCATG
309 AGAG-ATA
* * ** * * * * *
2320625 AAGTTAGA-CCATACAAAAATTGGTGGGAAAAAAAAGCCTTTCTTGCAAAACGAAAGCACCAATA
1 AACTTTGATTTAT-CAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * * ** * *
2320689 TCATGTATCCTAATTAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGAGAAT-AGT
63 TCATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGAG-ATCATT
* * * * *
2320752 A-TGGGTATTCATGTTTGTCAT-ATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGATGTAA
126 ACT-AG-AATCATGTTTGTC-TCATTTAAG-GACAAACTTTGACTT-TA-CAAAAATTGGTGGAA
* * * * * * * * *
2320813 AGAAAAGCTTTTCCTACGACACCAAAGCATCAATGTCATGTATTCTAATGAAGAA-AATGTGTTT
185 AGAAAAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAA-AAGAATATG-TT
* * * * * * * ** * * *
2320877 TTAGAT-CCCAATCCTGAAAAGTATG-GGGATTGTTTTGA-TAATCGACGCTTGCCTTATTTAAG
248 TAAGGTGCCTAATCTTGAAAAGAATGAGGAATAG-CATGAGTATTC-ACGTTTGTCTTATTTAAG
* *
2320939 TGATG
311 AGATA
* * * * * * * *
2320944 AACTTTGATTT-TAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATA
1 AACTTTGATTTATCA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * *
2321007 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATC-AC-AAAGTAA-ATGAAGATCAA
63 TCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAAG-AATA-G-AGATCAT
* * * * * * * * *
2321069 TA-TCGGAATCCATGTTTGGCTTATTTGAGGCACGAACATAGACTTTACGAAAATTGGTGGGAAG
125 TACT-AGAAT-CATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAATTGGTGGAAAG
* * ** * * * * ** *
2321133 -AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCTTGTACCCTTAT-AAGAAGACTACATTTAT
187 AAAAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAA-AAGAATATGTTTAA
*** * **
2321196 GGTGCCTAATCCCAAAAAGAATG-GGAAATAGAATGAGTATTCATATTTGTCTTATTTAAGAG-T
251 GGTGCCTAATCTTGAAAAGAATGAGG-AATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGAT
2321259 CA
315 -A
* ** * * * * *
2321261 AACTTTGATTCTATCAAAAACGGCAGAAAGAAAAGCTTTTTTTTGCGACACCAAAGCATCATTGT
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGC-TTTTCTTGCGAAACAAAAGCATCAATAT
* * * * ** * * *
2321326 CATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAATAATGGAGA-CTGTTA
64 CATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCTACAAAAGAATAGAGATC-ATTA
* * * ** * * ** ** *
2321389 CGAGAATCGATGCTTGTCTTA-TTAAGGGGATGAACATT-AATATTATGTAAAATAAG-GCAAAG
127 CTAGAATC-ATGTTTGTCTCATTTAA--GGACAAACTTTGACT-TTA-CAAAAATTGGTGGAAAG
* ** * * * * * ** *
2321451 AAAA-TATTTCCACGCAAAAAAAAATCATCAATATCAAT-TATCTTAATGAGGAGAATTTGTTTA
187 AAAAGCATTT-CTTGCGAAACAAAAGCACCAATATC-ATGTATCCTAATGAAAAGAATATGTTTA
** * * ** * * * * *
2321514 TA-GTGCCTAATC-ACAAAATGAATGAAG-AT--CAATTCTAAAATCCATGTTTGGCTCA-TT-C
250 -AGGTGCCTAATCTTGAAAA-GAATGAGGAATAGC-A-T-GAGTATTCACGTTTGTCTTATTTAA
* *
2321572 GTGGTA
310 GAGATA
** * * * * *
2321578 CGAACTTAAACTTTA-CAAAAATTG-GGAGA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATA
1 --AACTTTGA-TTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * * *** * * * * * *
2321640 TCCTGTATCCTTATGAGAAGACTACATTTATGGTGCCTAATCCTGA-AACA-AATGGGGATTAGT
63 TCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT-CT-ACAAAAGAATAGAGATCATT
* *
2321703 A-TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-TGGTGGAAA
126 ACT-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTT-TA-CAAAAATTGGTGGAAA
* * * * * * * * * * * **
2321765 GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGCATCCGAATGAAGAGAATGTGTTTTT
186 GAAAAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAA
* * * * ** * * * * *
2321830 GGAT-CCCAATCTTGAAAAGGAT--GGAGATTGTTACAAG-AATCGATGCTTGCCTTATTTAAGT
251 GG-TGCCTAATCTTGAAAAGAATGAGGA-ATAG-CATGAGTATTC-ACGTTTGTCTTATTTAAGA
*
2321891 GATG
312 GATA
* * * * *
2321895 AACTTTGATTT-TAAGGAAAATAGTGCAAAGAAAAG-ATTTC---C-ATACAAAAG-A--AA-AT
1 AACTTTGATTTATCA--AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * * *
2321950 CATTTATCCTAATGAGGAGAATCTGTTTATAGTGCCTAA-CCACAAAATGAAT-GAAGATCAATA
64 CATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAG-AGATCATTA
* * * * * * * *
2322013 CTAGAATCCACGTTTGGCTCAATTGAGATACGAACTTAGACTTTACAAAAATTTGTCGG-AAGAA
127 CTAGAAT-CATGTTTGTCTCATTTAAG-GACAAACTTTGACTTTACAAAAATTGGT-GGAAAGAA
* * * ** * ** * *
2322077 AGGC-TTTCTTGCGAAACCAAAGCACCGATATTGTGTATCCTAATGAGAAGTCTATGCTTATGGT
189 AAGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAAGGT
* * ** * *
2322141 GCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATTTTTGTCTTATTTAAAAGACA
254 GCCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
* * *
2322203 AACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTC
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * * * ** **
2322268 ATGTATCCTAAAGAAGAGAATGTGTTTTTGGAT-CCTAATCTTGAAAAGAATAGAGATTGTTACT
65 ATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCTACAAAAGAATAGAGATCATTACT
* * * * * * *
2322332 AGAATTGATGCTTGTCTTATTTAAAGGATAAAGTTTGATTTTA-AGGAAAATAGG-GGAAAGAAA
129 AGAA-TCATGTTTGTCTCATTT-AAGGACAAACTTTGACTTTACA--AAAATTGGTGGAAAGAAA
* * * * * * **
2322395 AG-ATTTCCATGCAAAACAAAATCATCAATATCAT-TAATCATAACGAGGAGAATATGTTTATA-
190 AGCATTT-CTTGCGAAACAAAAGCACCAATATCATGT-ATCCTAATGAAAAGAATATGTTTA-AG
** * * * * * *
2322457 GTGCCTAATC-ACAAAATGAAAGAAGATCAATA-C-T-AGAATCCACGTTTGGCTCATTT--GCA
252 GTGCCTAATCTTGAAAA-GAATG-AG--GAATAGCATGAGTATTCACGTTTGTCTTATTTAAG-A
*
2322516 GCATG
312 G-ATA
* * * * * * * * *
2322521 AACTTAGACTTT-GCAAAAATTAGTGG-GAGAAAAGCCTTTCTTGTGAAACCAAAGCACCAGTAT
1 AACTTTGA-TTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * * * * ** *
2322584 CGTGTATCCTAAAGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATAGGGAAT-AGTT
64 CATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGAG-ATCA-TT
* * * * *
2322647 --TGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGACTCTATCAAAAA-TGGTGAAAAG
126 ACT-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTTTA-CAAAAATTGGTGGAAAG
* * ** * * **
2322709 AAAAGCTTTTCTTGC-AACACGAAAGCTTCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTT
187 AAAAGCATTTCTTGCGAA-ACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAA
* * * * * * * *
2322773 GGAT-CGTAATCTTGAAAAGAA--CGGAGATTGTTATGAG-AATCGATGGTTGTCTTATTTAAGG
251 GG-TGCCTAATCTTGAAAAGAATGAGGA-ATAG-CATGAGTATTC-ACGTTTGTCTTATTTAAGA
*
2322834 GATT
312 GATA
*** * * * * * *
2322838 AACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATAT
1 AACTTTGAT-TTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
*
2322902 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAAT-GAAGATCATTA
64 CATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAG-AGATCATTA
* * * *
2322965 CTAGAATCAATGTGTGTCTCATTTGAGGCACAAACTTGGACTTTACAAAAATTGGTGGGAAG-AA
127 CTAGAATC-ATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAATTGGTGGAAAGAAA
* * * *
2323029 AGCATTTCTTGCGAAACAAAAGCACCAATATCGTGTATCCCAATGAAAAGACTATGTTCAAGGTG
190 AGCATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAAGGTG
2323094 CCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
255 CCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
* * * *
2323155 AACTTTGATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * ** * *
2323219 ATGTATCCTAATGAAGAG-ATGTGTCTT-T-GCAT-CCCAATCTTGAAAAAAATGGAGA--ATGT
65 ATGTATCCTAATGAGGAGAATGTGT-TTATAG--TGCCTAATCTACAAAAGAATAGAGATCAT-T
* * * * * * ** * *
2323278 CACAAGAATTGATGCTTGCCTTATTTAAGGGA-TAACTTTGTTTTTA-AGGAAAATAGG-GTAAA
126 -ACTAGAA-TCATGTTTGTCTCATTTAA-GGACAAACTTTGACTTTACA--AAAATTGGTGGAAA
* * * * * * ** *
2323340 GAAAAG-ATTTTCATGCAAAAGAAAATCATCAATATCAT-TAATCTTAATGAGGAGAATGTGTTT
186 GAAAAGCA-TTTCTTGCGAAACAAAAGCACCAATATCATGT-ATCCTAATGAAAAGAATATGTTT
* * * * * * *
2323403 ATA-GTGCCTAATCAT-AAAATGAATGAAGATCAATA-C-T-AGAATCCACATTTGGCTCATTT-
249 A-AGGTGCCTAATCTTGAAAA-GAATG-AG--GAATAGCATGAGTATTCACGTTTGTCTTATTTA
*
2323462 -GAGGTA
309 AGAGATA
* * * * * * *
2323468 CGAACTTAGACTTTA-CGAAAATTGGTGGGAAG-AAAGCCTTTCTTACGAAACCAAAGCGTCAAT
1 --AACTTTGA-TTTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAAT
* * * *** * * ** * *
2323531 ATCGTGTATCCTTAA-GAGAAGACTACATTTATGGTGCCTAATC-CCGAAAACTATGGGGA--A-
62 ATCATGTATCC-TAATGAGGAGAATGTGTTTATAGTGCCTAATCTAC-AAAAGAATAGAGATCAT
* * ** * *
2323591 TAGCATGAGTATTCATATTTGTCTTTTTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGGTAG
125 TA-C-T-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTT-TA-CAAAAATTGGTGG
* * * *** * ** *
2323654 AAAGAAAAGCCA---CAT--GACACCAAAGCTTTAATGTCATGTATCCTAATGAGGAGAATGTGT
183 AAAGAAAAG-CATTTCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGT
** * * * * * *
2323714 TTTTGGAT-CCCAATCTTGAAAAGAATTGA-G-ATTGTTATGAG-AATCGATGCTTGTCTTATTT
247 TTAAGG-TGCCTAATCTTGAAAAGAA-TGAGGAATAG-CATGAGTATTC-ACGTTTGTCTTATTT
* *
2323775 AAGGGATG
308 AAGAGATA
* * ** * * * *
2323783 AACTTTGATTT-TAAGGAAAATAGG-GCAAAGAAAAGAATTCCATG-GAATAGAAAATCATCAAT
1 AACTTTGATTTATCA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAA-ACAAAAGCATCAAT
* * *
2323845 ATCAT-TAAGCTTAATAAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAAT-GAAGATCA
62 ATCATGT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAG-AGATCA
* * * *
2323907 TTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-
124 TTACTAGAATC-ATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAATTGGTGGAAAG
** ** * **
2323971 AAAAGC-TCTTCTTGTAAAATC-AAAGCACCAATATTGTGTATCCTAATGAGAAGGCTATG-TT-
187 AAAAGCAT-TTCTTGCGAAA-CAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTA
* * * *
2324032 ---TGCCTAATCTTGAAAAGAATGCAAAATAGTATGAGTATGAGTATTCATGTTTGTCTTATTTA
250 AGGTGCCTAATCTTGAAAAGAATG----A-GGAAT-AGCATGAGTATTCACGTTTGTCTTATTTA
*
2324094 AGAGACA
309 AGAGATA
* * * * * *
2324101 AACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTGGTGACACCAAAGCATCAATGTC
1 AACTTTGATT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
* * * * ** *
2324166 ATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATAGAGTTCATTA-T
65 ATGTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCTACAAAAGAATAGAGATCATTACT
* * * * ** * * * * *
2324229 GAGAATCAATGCTTATCTTATTTATGGGATGAACTTTGATTTTA-AGGAAAGTAGG-GCAAAGTA
129 -AGAATC-ATGTTTGTCTCATTTA-AGGACAAACTTTGACTTTACA--AAAATTGGTGGAAAGAA
** * * * * ** ** * * **
2324292 AAG-ATTTTCAAGCAAAAGAAAATCATCAATATCAT-TAATTTTAATGAGTAGAATGTATTTATT
189 AAGCA-TTTCTTGCGAAACAAAAGCACCAATATCATGT-ATCCTAATGAAAAGAATATGTTTAAG
* * ** ** * * * ** *
2324355 TTTCCTAATC-ACAAAATGAATGA--ATATCAATACTG-GAATCCACGTTTGCCTCGTTTGAG-G
252 GTGCCTAATCTTGAAAA-GAATGAGGA-AT-AGCA-TGAGTATTCACGTTTGTCTTATTTAAGAG
**
2324415 CACG
313 -ATA
* ** * * * * * ***
2324419 AACTTAGACTTTA-CATAATTTGGTGGGAAA-TAAAGCCTTTCTTGTGAATCCAAAGTGCCAATA
1 AACTTTGA-TTTATCA-AAAATGGT-GGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * * * * ** * * *
2324482 TCATGTGTTCTAATGAGAAGACTATGTTTA-AGGTGCCTCATCTTGAAAAGAATGGGGAAT-AGT
63 TCATGTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCTACAAAAGAATAGAG-ATCATT
* * * * * **
2324545 A-TGAGTATTCATGTTGGTCTTATTTAAGAGACAAGCTTTGATTTTATCAAAAA-CAGTGGAAAG
126 ACT-AG-AATCATGTTTGTCTCATTTAAG-GACAAACTTTGACTTTA-CAAAAATTGGTGGAAAG
* * * * * ** * **
2324608 AAAAGC-TTTTTCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
187 AAAAGCATTTCT-TGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAA
* * *
2324672 GGAT-CCCAATCTTGAAAAGAAT-AGAGATTATTGC--GAG-AATCGATTC-TTT-TCTTATTTA
251 GG-TGCCTAATCTTGAAAAGAATGAG-GA--ATAGCATGAGTATTC-A--CGTTTGTCTTATTTA
* *
2324730 AGGGATG
309 AGAGATA
* * * * * * * *
2324737 AACTTTGATTT-TGAAGAATATAGG-GTAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATA
1 AACTTTGATTTATCAA-AA-AT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * *
2324800 TCAT-TAATCTTAATGAGGAAAATGTGTTTATAGTG-CTAATC-ACAAAATGAAT-GATTATCAA
63 TCATGT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAA-GAATAGA-GATCAT
* * * * * * * *
2324861 AACTAGAATCCACGTTTGCCTCATTTGAGGCACGAACTTAGACTTTAC-AAATTTGGTGG-TA-A
125 TACTAGAAT-CATGTTTGTCTCATTTAAGG-ACAAACTTTGACTTTACAAAAATTGGTGGAAAGA
* * * * * * *
2324923 AAAGCTTTTCTTGCGAACCCAAAGCACTAATATCGA-GTATCCTAATGAGAAGACTAAGTTTATA
188 AAAGCATTTCTTGCGAAACAAAAGCACCAATATC-ATGTATCCTAATGAAAAGAATATGTTTA-A
* * * ** * *
2324987 -GTGCCTAATCTTGAAAAAAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTAAGAAACA
251 GGTGCCTAATCTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
* ** * * * *
2325051 AACTTT-ATTTCTATAAAAAACAGTGGAAA-AAAAGCTGTTCTTGCGACACCAAAGCATCAATGT
1 AACTTTGA-TT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * *
2325114 CTTGTATCATAATGAAGAGAATGTGTTT
64 CATGTATCCTAATGAGGAGAATGTGTTT
2325142 TTGGATCCCA
Statistics
Matches: 6403, Mismatches: 1862, Indels: 1383
0.66 0.19 0.14
Matches are distributed among these distances:
306 1 0.00
307 5 0.00
308 115 0.02
309 93 0.01
310 13 0.00
311 7 0.00
312 29 0.00
313 182 0.03
314 244 0.04
315 541 0.08
316 976 0.15
317 2177 0.34
318 1424 0.22
319 292 0.05
320 164 0.03
321 112 0.02
322 11 0.00
323 4 0.00
324 13 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (315 bp):
AACTTTGATTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCA
TGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTACAAAAGAATAGAGATCATTACTAG
AATCATGTTTGTCTCATTTAAGGACAAACTTTGACTTTACAAAAATTGGTGGAAAGAAAAGCATT
TCTTGCGAAACAAAAGCACCAATATCATGTATCCTAATGAAAAGAATATGTTTAAGGTGCCTAAT
CTTGAAAAGAATGAGGAATAGCATGAGTATTCACGTTTGTCTTATTTAAGAGATA
Found at i:2328247 original size:42 final size:42
Alignment explanation
Indices: 2328186--2328304 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2328176 TAGCCCTCAA
* *
2328186 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2328228 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
2328270 GGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2328305 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2331298 original size:12 final size:11
Alignment explanation
Indices: 2331276--2331351 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2331266 AGAGAAAGAA
*
2331276 GAGAGAGGAGG
1 GAGATAGGAGG
2331287 GATGATAGGAGG
1 GA-GATAGGAGG
2331299 AGAGATAGGA--
1 -GAGATAGGAGG
*
2331309 GAGATAGTA--
1 GAGATAGGAGG
2331318 GAGATAGGAGG
1 GAGATAGGAGG
2331329 GATGATAGGAGG
1 GA-GATAGGAGG
*
2331341 AGAGACAGGAG
1 -GAGATAGGAG
2331352 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2331312 original size:33 final size:30
Alignment explanation
Indices: 2331266--2331356 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
2331256 TAGCCCTCAA
* *
2331266 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
2331299 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
2331329 -GATGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
2331357 ATAGAGAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:2331321 original size:11 final size:9
Alignment explanation
Indices: 2331296--2331356 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2331286 GGATGATAGG
2331296 AGGAGAGAT
1 AGGAGAGAT
2331305 AGGAGAGAT
1 AGGAGAGAT
*
2331314 AGTAGAGAT
1 AGGAGAGAT
*
2331323 AGGAGGGAT
1 AGGAGAGAT
* *
2331332 --GATAG-G
1 AGGAGAGAT
*
2331338 AGGAGAGAC
1 AGGAGAGAT
2331347 AGGAGAGAT
1 AGGAGAGAT
2331356 A
1 A
2331357 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2331327 original size:42 final size:42
Alignment explanation
Indices: 2331266--2331384 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2331256 TAGCCCTCAA
* * *
2331266 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2331308 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2331350 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2331385 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2340549 original size:12 final size:12
Alignment explanation
Indices: 2340529--2340584 Score: 64
Period size: 12 Copynumber: 4.9 Consensus size: 12
2340519 TTTATTATCT
2340529 CTCCTATCTCTC
1 CTCCTATCTCTC
* *
2340541 CTTCTATCTCCC
1 CTCCTATCTCTC
2340553 CTCCTA--TCT-
1 CTCCTATCTCTC
*
2340562 CTACTATCTCTC
1 CTCCTATCTCTC
2340574 CTCCTATCTCT
1 CTCCTATCTCT
2340585 TCTTTCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
9 5 0.14
10 2 0.06
11 3 0.09
12 25 0.71
ACGTcount: A:0.11, C:0.46, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2340550 original size:21 final size:22
Alignment explanation
Indices: 2340524--2340584 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 22
2340514 CTCTCTTTAT
*
2340524 TATCTCTCCTATCTCTCCT-TC
1 TATCTCTCCTATCTCTACTATC
2340545 TATCTCCCCTCCTATCTCTACTATC
1 TATCT---CTCCTATCTCTACTATC
*
2340570 TCTC-CTCCTATCTCT
1 TATCTCTCCTATCTCT
2340585 TCTTTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
21 16 0.47
24 13 0.38
25 5 0.15
ACGTcount: A:0.11, C:0.44, G:0.00, T:0.44
Consensus pattern (22 bp):
TATCTCTCCTATCTCTACTATC
Found at i:2341360 original size:15 final size:15
Alignment explanation
Indices: 2341340--2341370 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2341330 TTTTTCCTTC
2341340 TTTTTTCTGTATTAT
1 TTTTTTCTGTATTAT
*
2341355 TTTTTTTTGTATTAT
1 TTTTTTCTGTATTAT
2341370 T
1 T
2341371 GAAAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.77
Consensus pattern (15 bp):
TTTTTTCTGTATTAT
Found at i:2341429 original size:38 final size:38
Alignment explanation
Indices: 2341378--2341469 Score: 184
Period size: 38 Copynumber: 2.4 Consensus size: 38
2341368 ATTGAAAAAA
2341378 AAAACTAACAGCAACAAGATCAAATGAGTTCAAGATTC
1 AAAACTAACAGCAACAAGATCAAATGAGTTCAAGATTC
2341416 AAAACTAACAGCAACAAGATCAAATGAGTTCAAGATTC
1 AAAACTAACAGCAACAAGATCAAATGAGTTCAAGATTC
2341454 AAAACTAACAGCAACA
1 AAAACTAACAGCAACA
2341470 GTATGATGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.52, C:0.20, G:0.12, T:0.16
Consensus pattern (38 bp):
AAAACTAACAGCAACAAGATCAAATGAGTTCAAGATTC
Found at i:2343948 original size:475 final size:476
Alignment explanation
Indices: 2342445--2347629 Score: 4705
Period size: 475 Copynumber: 10.8 Consensus size: 476
2342435 TCCTTTGCAT
* * * ** * *
2342445 TAGAATCTATGTTTGCCTAATTTGAGGCATAAACTTAGACTTTACAAAAATTAGTGGCAAGAAAG
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAG
* * *
2342510 CCTTTCTTGCGAAACAAAAGCACCAATACCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCC
66 CCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGCC
* * *
2342575 TAATATTGAAAAGAATGTGGAATAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAAACTTT
131 TAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
2342640 GATTTTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATATAT
196 GATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * **
2342704 CCTAATGAAGGGAATGTGTTTTTGAATCCTAATCTTGAAAAGAATGGAGATTGTTACAAGAATCG
261 CCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCG
** * *
2342769 ACACTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
326 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * * * * *
2342834 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGATAATGTATTTATATTGCATAATTAC
391 TGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * *
2342899 AAAATAAAAGAATAGCAATAC
456 AAAATGAATGAAGATCAATAC
* * * * * *
2342920 TGGAATCTATGTTTGGCTCATTTAAGGCACGAATTTAGACCTTACAAAAATTGGTGGGAAGAAAG
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAG
* * * *
2342985 CCCTTCTTGCGAAACAAAAGCACCAATACCATGTAT-CTTAATGAGAAGACAATGTTTAA---G-
66 CCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTT-ATGAGAAGACTATGTTTAAGGTGC
* * * *
2343045 CTAATCTTGAAAAGAATGCGAAATAGTAAGAGTATTCATGTTTGTCTTATTTACGAGACAAACTT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
2343110 TGATTCTATCAAAAACGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAACATCATTGTCATGTA
195 TGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* *
2343174 TCCTAATGAAGTGAATGCAT-TTTTTG-ATCCCAATCTTGAAAATAATGGAGATTGTTATGAGAA
260 TCCTAATGAAGAGAATG--TGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAA
* * * * * * *
2343237 CCGGTGCTTGTCTTATTTAAGGGATGGACTTTGATTTTAAGGAAAATAAGGTAAAGCAAAGATAT
323 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * ** *
2343302 CCATGCAAAAAAAAAATCATCAATAACATTAATCTTAATGAGGAGAATGGGCATATAATGCCTAA
388 CCATGC-AAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2343367 TCACAAAATAAATGAAGATTAATTC
452 TCACAAAATGAATGAAGATCAATAC
**
2343392 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTATGAAAATTGGTAGG-AAGAAA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAGAAA
* * * * ** *
2343456 TCCTTTCTTGAGAAACCAAAG-ATCC-ATATCGTGTATCCTTATGAGAAGGCTACATTTATGGTG
65 GCCTTTCTTGCGAAACCAAAGCA-CCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTG
* * * * * * *
2343519 CCTAATCTCGAAAAAAATGGGGAATAGTGTGAGTTTTCAGGTTTGTCTTATTTAAGAGATAAACA
129 CCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
2343584 TTGATTCTATCAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGT
194 TTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * **
2343649 ATCCTAATGAAGGGAATGTGTTTCTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAAT
259 ATCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAAT
* * *
2343714 CGATGCTTGTCTTATTAAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTC
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
** * * *
2343779 CATGCAAAAAAAAATTGTCAATATCATTTATCCTAAAGAGGGGAATATGTTTATAGTGCCTAATC
389 CATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
2343844 AAAAAATAAATGAAGATCATTAT
454 ACAAAATGAATGAAGATCAATAC
* * *
2343867 TAGAAT-TCATGTTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGAAAGAAA
1 TAGAATCT-ACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAA
* * * *
2343931 GCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTCTCC---TGAGAAAACTATGTTTAAGGTGC
65 GCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGC
* * * * * *
2343993 TTATTCTTGAAAAGAATGAGGAGTAGTATGAGTATTCATTTTTGTCTTATTTAAGAGATAAACTT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * * *
2344058 TGATTTTACCAAAAACGGTGGAGA-AAAAGCTTTTCTTGCGACACC-AAGAATCAATGTCCTGTA
195 TGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
2344121 TCCTAATGAAGAGAGTGTGTTTGTGGATCCCAATCTTGAAAACAATGGAGATTGTTATGAGAATC
260 TCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC
* * *
2344186 -ACTGCTTGTCTTATTTAAGGGATGAACTTTG-TTTTCTAGGAAAAAAAAGGGCAAAGAAAAGTT
325 GA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGG--AAAATAGGGCAAAGAAAAGAT
* * ** *
2344249 TTCCA-CCTAAAAAAAATTGTCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTA
386 TTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
*
2344313 ATCACAAAATGAATGAAAATCAATAC
451 ATCACAAAATGAATGAAGATCAATAC
* * * ** * *
2344339 TGGAATCCACGTTTGGCTCATTTGAGGCACAAACTTTTACTTTACGAAAATTGGAGGGAAA-AAA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAAGAAA
* * * * *
2344403 GCTTTTCTTGCAAAACCAAAGCACCAATATCATGTGTCCTAACGAGAAGACTATGTTTAAGGTGC
65 GCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGC
* * *
2344468 CTAATCTTGAACAGAATGGAGAATAGTATGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
** * * *
2344533 TGATTCTATCAAAAATAGTGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTA
195 TGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
2344598 TCCTAATGAAAAGAATGTATTTTT-AGATCCCAATCTTGAAAAGAATTGAGATTGTTACGAGAAT
260 TCCTAATGAAGAGAATGTGTTTTTGA-ATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAAT
* * *
2344662 TGATGCTTGTCTTATTTAAGGGAGGAACTTTGATTTTAAGGAAAATAGGACAAA-AAAA-ATTTT
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTT
* * * *
2344725 CAATGCAAAAGAAAATCATCAATATCATTAATCATAATGAGGAGAATGTGTTTATAGTGCCTAAT
388 CCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* *
2344790 CATAAAATGAATAAAGATCAATAC
453 CACAAAATGAATGAAGATCAATAC
* * * * * **
2344814 TAGAATCTACGTTTGCCTCAATTGAGGCATGAATTTAGACTTTAAAAAAATTGGTGGGCAGAAAA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAG-AAA
* * * * * * ** *
2344879 GCTTTTCTTGTGAAACTAATGCATCAATATCATGTATCCTTGTGAGAAGACTACATTTATGGTGC
65 GCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGC
* * * *
2344944 CTAATCCTGAAAGGAGTGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTAACG-GACAAACT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAA-GAGACAAACT
* *
2345008 TTGATTCTATCAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTGTCATGT
194 TTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* ** * *
2345073 ATCCTAATGTAGAGGGTGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGAGAAT
259 ATCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAAT
* * * * * * *
2345138 GGATGCTTGCCTTATTTAAGGGATGAGCTTTGATTTTATGAAAAATAGAGTAAAGAAAAAGATTT
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAAGATTT
* * * * *
2345203 CCATGCAAAAGAAAATCATCAACATC-TTTAATCTTAATGAGGAGAGT-TCATTTTATAGTGCCT
388 CCATGCAAAAAAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGT--GTTTATAGTGCCT
* *
2345266 AATCACAAATTGAATGAAGATCAACAC
450 AATCACAAAATGAATGAAGATCAATAC
* * * * * *
2345293 TAGAATCCACATTTGGCTCATTGGAGGTACGAACTTTGACTTTACAAAAATTTGTGGGAAA-AAA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAGAAA
* * * * *
2345357 GCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAAAGAAAAGGCTATGTTTAAGGTGC
65 GCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGC
* * * * * * *
2345422 CTAATCTTGAAAAGAGTGGGGAATGGTAGGGGTATTCATGTTTATCTTATTTATGAGATAAACTT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * * ** * *
2345487 TGATTTTATCCAACATGGTAGAAAGAAAAGTTTTTCTTGCGACATGAAAGCGTCAATGTCATATA
195 TGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
2345552 TCCTAAAGAAGAGAATGAGTTTTTGGATCCCAATCTTGAAAAGAATGAAGATTGTTATGAGAATC
260 TCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC
* *
2345617 GATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCA
325 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
2345682 ATGGAAAAGAAAATTATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCA
390 ATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
2345747 CAAAATGTATGAAGATCATTAC
455 CAAAATGAATGAAGATCAATAC
* * * * * * *
2345769 AAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAGTTGGTGGGAAA-AAA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAGAAA
* * * * * *
2345833 GCCTTTCTTTCAAAACCAATGCACCAATATCGTGAATCCTTATGAGAAGACTACT-TTTATGGTG
65 GCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTA-TGTTTAAGGTG
* * ** * * *
2345897 CCTAATCCTGAAAAGAATGGGGATTA-TATGAGTATTCCCGTTTGTCTTATTTATGAGAGAAACA
129 CCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
2345961 TTGATTCTATCAAAAACGGTAGAAAGAAAAACTTTTCTTGCGACACCAAAGCTTCAATGTCATGT
194 TTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
** *
2346026 ATCCTAATGAAGAGAATGTGTTTTTTG-ATCTGAATCTTGAAAAGAATGGAGATTGTAATGAGAA
259 ATCCTAATGAAGAGAATGTG-TTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAA
* * * * *
2346090 TCGATACTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCGAAGAAAAGGTTT
323 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
2346155 CCATGC-AAAAGAAATCATCAATAACATTAATCTTAATGAGGATAATGTGTTTAT-GCTGCCTAA
388 CCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAA
* *
2346218 TCACAAAATGAATGAAGATTAAAAC
452 TCACAAAATGAATGAAGATCAATAC
* * *** * * *** *
2346243 TAGAATCCATGTTTTAATC-TTAATGAGGATAATGTGTTTATG-CTGCCTAATCACAAAATGAAT
1 TAGAATCTACGTTTGGCTCATT--TGAGG--CACGAACTTA-GACT---T--T-ACAAAA--ATT
* * * * * ** **** * * * * * *
2346306 GAAGAGTAAAACTAGAATCCATGTT-TGGCTCATTTGAGGTACGAACT-TAGACTTTA-CGAAAA
53 G--GTG-GAAA-GA-AAGCC-T-TTCTTGCGAAACCAAAGCACCAA-TAT-CA-TGTATC----C
* * * ** ** *** * * * * * * * **
2346368 TTGGTGGGAAAAAAAACTTTCTTGTGAAACTAAAGCAT--CAA-AATCGTGTATCCTTATGAGAA
104 TT-ATGAGAAGACTATGTTTAAGGTG--CCT-AATCTTGAAAAGAATGGGGAAT-AGTATGAG--
* * ** ** * * **** *
2346430 TACTACAT-TTATGGTGCCTAATCCCAAAAAGAATGGGGAATAGTATGAGTAT-TCATGTTTATC
162 TA-TTCATGTT-T-GT--CTTAT----TTAAG-A--GACAA-ACTTTGA-T-TCT-ATCAAAAAC
* * ** * * * * **** * *
2346493 -TTATTTAAAAGACAAA-CTTTGATT-CTATCA--AAAACGGTGGAAAAAAATCTTTCCT--TGC
211 GGTA---GAAAGA-AAAGCTTTTCTTGCGA-CACCAAAGC-AT-CAATGTCATGTATCCTAATG-
* * * * * * * * * * *
2346551 GAGACGAAAGCATAAATTTCATGTATCCTAA---TGAAGAGAGT-G-TATTTTTA-GATCCCAAT
268 AAGA-GAATG--T--GTTT-TTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGA---GAAT
** * ** * * * * **
2346610 CTTGAAAACAATGGAGATT-GTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGTT
324 C--G-ATGC--TTG-TCTTATTTAAG-GGA-TGA-ACTT-TGAT-TTTAA---------------
* * **
2346674 TTTCAGGAAAAGAGGGCAAAGAAAAGTTTTCCATGCAAAAAAAAATTGTCAATATCATTTATCCT
363 -----GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCT
* *
2346739 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCAACAC
423 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
* * * * ** *
2346793 TAGAATCCACATTTGGCTCATTTGAGGCACAAACTTATACTTTATGAAAATTGGAGGGAAA-AAA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAAGAAA
** * * * *
2346857 GCCTTTCTTGCGAGGCGAAAGCACCAATATCATGTATCCTAATGAGAAGGCTATGTTTAAGATGC
65 GCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGC
* *
2346922 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTTTTATTTAAGAGACAAACTT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
2346987 TGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATATA
195 TGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * *
2347052 TCCTAATGAAGAGAGTGTGTTTTTGGATCCCAATCTTGAAAAGGATAGAGATTGTTATGAAAATC
260 TCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC
*
2347117 GATGCTTGTCTTATTTAAGGGATGAACTTTGTTTTTAA-G-----A----AAAG---A-ATTT-C
325 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* *
2347167 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGA-AAGTGTGTTTATAGTGCCTAATC
390 ATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATC
* *
2347231 ACAAAATGAATGAATATCAATAA
454 ACAAAATGAATGAAGATCAATAC
* * * * * * * * *
2347254 TGGAATCCATGTTTCGCTCATTTGAGGCATGAACTTATACTTTACGAAAATTGGAGGGAAA-ATA
1 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAAGAAA
** *
2347318 GCCTTT-TCTGCGAAACCAAAGCACCAATATTGTGTATCCTAATGAGAAGACTATGTTTAAGGTG
65 GCCTTTCT-TGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTG
* *
2347382 CCTAATCTTGAAAAGAATGGGGAATAGTATGTGTTTTCATGTTTGTCTTATTTAAGAGACAAACT
129 CCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
2347447 TTGATTCTATCAAAAACGGTAGAAA-AAAAGCATTTCTTACGACACCAAAGCATCAATGTCATGT
194 TTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * *
2347511 ATCCTAATGAAGAGAATGTATTTTTGGATCCCAATCTTGATAAGAATTGAGATTGTTACGAGAAT
259 ATCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAAT
*
2347576 CGATGCTTGTCTTATTTAAGGGAGGAACTTTGATTTTAAGGAAAATAGGGCAAA
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
2347630 AAACATAAGG
Statistics
Matches: 3814, Mismatches: 704, Indels: 389
0.78 0.14 0.08
Matches are distributed among these distances:
460 132 0.03
461 276 0.07
462 3 0.00
463 1 0.00
466 5 0.00
470 8 0.00
471 356 0.09
472 325 0.09
473 126 0.03
474 102 0.03
475 760 0.20
476 622 0.16
477 159 0.04
478 324 0.08
479 80 0.02
480 4 0.00
482 1 0.00
483 6 0.00
485 2 0.00
486 1 0.00
487 4 0.00
489 1 0.00
490 4 0.00
491 11 0.00
492 4 0.00
493 2 0.00
496 7 0.00
497 23 0.01
498 5 0.00
499 11 0.00
500 8 0.00
501 10 0.00
502 3 0.00
503 12 0.00
504 4 0.00
505 4 0.00
506 12 0.00
507 4 0.00
508 31 0.01
509 9 0.00
510 12 0.00
511 4 0.00
512 9 0.00
513 7 0.00
514 4 0.00
515 12 0.00
516 11 0.00
517 31 0.01
518 4 0.00
519 13 0.00
520 6 0.00
521 3 0.00
522 10 0.00
523 4 0.00
524 14 0.00
525 6 0.00
526 11 0.00
527 21 0.01
528 3 0.00
529 4 0.00
531 3 0.00
532 5 0.00
533 11 0.00
534 4 0.00
535 1 0.00
537 4 0.00
538 1 0.00
539 3 0.00
541 4 0.00
542 1 0.00
544 1 0.00
547 6 0.00
549 32 0.01
550 84 0.02
551 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAG
CCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTTATGAGAAGACTATGTTTAAGGTGCC
TAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
GATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCG
ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
TGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCAATAC
Found at i:2344290 original size:947 final size:946
Alignment explanation
Indices: 2342445--2347629 Score: 4949
Period size: 947 Copynumber: 5.4 Consensus size: 946
2342435 TCCTTTGCAT
* * * * * * *
2342445 TAGAATCTATGTTTGCCTAATTTGAGGCATAAACTTAGACTTTACAAAAATTAGT-GGCAAGAAA
1 TAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGG-AAAAAA
* * *
2342509 GCCTTTCTTGCGAAACAAAAGCACCAATACCATGTATCCTAATGAGAAGACTATGTTTAAGGTGC
65 GCCTTTCTTGAGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGC
* * *
2342574 CTAATATTGAAAAGAATGTGGAATAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAAACTT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
2342639 TGATTTTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATATA
195 TGATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATATA
* *
2342703 TCCTAATGAAGGGAATGTGTTTTTGAATCCTAATCTTGAAAAGAATGGAGATTGTTACAAGAATC
260 TCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATC
** * * * *
2342768 GACACTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
325 GATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCA
* * * * *
2342833 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AGGATAATGTATTTATATTGCATAATT
390 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * * * *
2342897 ACAAAATAAAAGAATAGCAATACTGGAATCTATGTTTGGCTCATTTAAGGCACGAATTTAGACCT
454 ACAAAATAAATGAAGATCAATACTAGAATCTATGTTTGCCTCATTTAAGGCACGAACTTAGACTT
* * * * * *
2342962 TACAAAAATTGGTGGGAAGAAAGCCCTTCTTGCGAAACAAAAGCACCAATACCATGTATCTTAAT
519 TACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC--GTGTC-TCAT
* * * * *
2343027 GAGAAGACAATGTTTAA---G-CTAATCTTGAAAAGAATGCGAAATAGTAAGAGTATTCATGTTT
581 GAGAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTT
*
2343088 GTCTTATTTACGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCGACA
646 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCGACA
* * ** * *
2343153 CCAAA-ACATCATTGTCATGTATCCTAATGAAGTGAATGCATTTTTTGATCCCAATCTTGAAAAT
711 CCAAAGA-ATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAG
* * *
2343217 AATGGAGATTGTTATGAGAACCGGTGCTTGTCTTATTTAAGGGATGGACTTTGATTTTAAGGAAA
775 AATGGAGATTGTTATGAGAATC-ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AGGAAA
* * * * *
2343282 ATAA-GGTAAAGCAAAGATATCCATGCAAAAAAAAAATCATCAATAACATTAATCTTAATGAGGA
838 AAAAGGGCAAAGAAAAGATTTCCAT-C-CAAAAAAAATCATCAATAACATTAATCTTAATGAGGA
* * * * *
2343346 GAATGGGCATATAATGCCTAATCACAAAATAAATGAAGATTAATTC
901 GAATGTGCATATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
* * ** * *
2343392 TAGAATCTACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTATGAAAATTGGTAGGAAGAAAT
1 TAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGAAAAAAG
* * * ** *
2343457 CCTTTCTTGAGAAACCAAAG-ATCC-ATATCGTGTATCCTTATGAGAAGGCTACATTTATGGTGC
66 CCTTTCTTGAGAAACCAAAGCA-CCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGC
* * * * * * *
2343520 CTAATCTCGAAAAAAATGGGGAATAGTGTGAGTTTTCAGGTTTGTCTTATTTAAGAGATAAACAT
130 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
2343585 TGATTCTATCAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCATGTA
195 TGATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATATA
* *
2343650 TCCTAATGAAGGGAATGTGTTTCTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATC
260 TCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATC
* * *
2343715 GATGCTTGTCTTATTAAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCC
325 GATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCA
* ** * *
2343780 ATGCAAAAAAAAATTGTCAATATCATTTATCCTAAAGAGGGGAATATGTTTATAGTGCCTAATCA
390 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
2343845 AAAAATAAATGAAGATCATTATTAGAAT-TCATGTTTGCCTCATTTGAGGCACGAACTTAGACTT
455 CAAAATAAATGAAGATCAATACTAGAATCT-ATGTTTGCCTCATTTAAGGCACGAACTTAGACTT
* * *
2343909 TACAAAAATTAGTGGAAAGAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTCTCCTGAG
519 TACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTCTCATGAG
* * * * * * *
2343974 AAAACTATGTTTAAGGTGCTTATTCTTGAAAAGAATGAGGAGTAGTATGAGTATTCATTTTTGTC
584 AAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTC
* * * *
2344039 TTATTTAAGAGATAAACTTTGATTTTACCAAAAACGGTGGAGAAAAAGCTTTTCTTGCGACACC-
649 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCGACACCA
* * * *
2344103 AAGAATCAATGTCCTGTATCCTAATGAAGAGAGTGTGTTTGTGGATCCCAATCTTGAAAACAATG
714 AAGAATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATG
*
2344168 GAGATTGTTATGAGAATCACTGCTTGTCTTATTTAAGGGATGAACTTTGTTTTCTAGGAAAAAAA
779 GAGATTGTTATGAGAATCA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTT-TAGG-AAAAAA
* ** * * * *
2344233 AGGGCAAAGAAAAGTTTTCCA-CCTAAAAAAAATTGTCAATATCATTTATCCTAATGAGAAGAAT
841 AGGGCAAAGAAAAGATTTCCATCC-AAAAAAAATCATCAATAACATTAATCTTAATGAGGAGAAT
** *
2344297 GTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCAATAC
905 GTGCATATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
* ** *
2344339 TGGAATCCACGTTTGGCTCATTTGAGGCACAAACTTTTACTTTACGAAAATTGG-AGGGAAAAAA
1 TAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTA-GGAAAAAA
* * *
2344403 GCTTTTCTTGCA-AAACCAAAGCACCAATATCATGTGTCCTAACGAGAAGACTATGTTTAAGGTG
65 GCCTTTCTTG-AGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTG
* * *
2344467 CCTAATCTTGAACAGAATGGAGAATAGTATGTGTATTCATGTTTGTCTTATTTAAGAGACAAACT
129 CCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
2344532 TTGATTCTATCAAAAATAGTGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGT
194 TTGATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATAT
* * * *
2344597 ATCCTAATGAAAAGAATGTATTTTT-AGATCCCAATCTTGAAAAGAATTGAGATTGTTACGAGAA
259 ATCCTAATGAAGAGAATGTGTTTTTGA-ATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAA
* * * *
2344661 TTGATGCTTGTCTTATTTAAGGGAGGAACTTTGATTTTAAGGAAAATAGGACAAA-AAAA-ATTT
323 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGA-TT
* * *
2344724 TCAATGCAAAAGAAAATCATCAATATCATTAATCATAATGAGGAGAATGTGTTTATAGTGCCTAA
387 TCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAA
* * * * * * * *
2344789 TCATAAAATGAATAAAGATCAATACTAGAATCTACGTTTGCCTCAATTGAGGCATGAATTTAGAC
452 TCACAAAATAAATGAAGATCAATACTAGAATCTATGTTTGCCTCATTTAAGGCACGAACTTAGAC
* ** * * * * * *
2344854 TTTAAAAAAATTGGTGGGCAGAAAAGCTTTTCTTGTGAAACTAATGCATCAATATCATGTATCCT
517 TTTACAAAAATTGGTGGAAAG-AAAGCCTTTCTTGCGAAACCAAAGCACCAATATC--GTGT-CT
** ** * * * *
2344919 TGTGAGAAGACTACATTTATGGTGCCTAATCCTGAAAGGAGTGGGGAATAGTATGGGTATTCATG
578 CATGAGAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGAGTATTCATG
* *
2344984 TTTGTCTTATTTAACG-GACAAACTTTGATTCTATCAAAAACAGTAGAAAGAAAAGCTTTTCTTG
643 TTTGTCTTATTTAA-GAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCTTTTCTTG
* * * **
2345048 CGACACCAAAGCATCAGTGTCATGTATCCTAATGTAGAGGGTGTGTTTTTGGATCCCAATCTTGA
706 CGACACCAAAGAATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGA
* * * * *
2345113 AAAGGATGGAGATTGTTATGAGAATGGATGCTTGCCTTATTTAAGGGATGAGCTTTGATTTTATG
771 AAAGAATGGAGATTGTTATGAGAAT-CATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGG
* * * * * * *
2345178 AAAAATAGAGTAAAGAAAAAGATTTCCATGCAAAAGAAAATCATCAACATCTTTAATCTTAATGA
835 AAAAAAAGGGCAAAG-AAAAGATTTCCATCCAAAA-AAAATCATCAATAACATTAATCTTAATGA
* * *
2345243 GGAG-A-GTTCATTTTATAGTGCCTAATCACAAATTGAATGAAGATCAACAC
898 GGAGAATGTGCA---TATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
* * * * * * *
2345293 TAGAATCCACATTTGGCTCATTGGAGGTACGAACTTTGACTTTACAAAAATTTGTGGGAAAAAAG
1 TAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGAAAAAAG
* * * * *
2345358 CCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAAAGAAAAGGCTATGTTTAAGGTGCC
66 CCTTTCTTGAGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCC
* * * * * * *
2345423 TAATCTTGAAAAGAGTGGGGAATGGTAGGGGTATTCATGTTTATCTTATTTATGAGATAAACTTT
131 TAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * ** *
2345488 GATTTTATCCAACATGGTAGAAAGAAAAGTTTTTCTTGCGACATGAAAGCGTCAATGTCATATAT
196 GATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATATAT
* * * * **
2345553 CCTAAAGAAGAGAATGAGTTTTTGGATCCCAATCTTGAAAAGAATGAAGATTGTTATGAGAATCG
261 CCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCG
2345618 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA
326 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA
* *
2345683 TGGAAAAGAAAATTATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCAC
391 TGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCAC
** * * * * *
2345748 AAAATGTATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTA
456 AAAATAAATGAAGATCAATACTAGAATCTATGTTTGCCTCATTTAAGGCACGAACTTAGACTTTA
* * * * *
2345813 CAAAAGTTGGTGGGAAA-AAAGCCTTTCTTTCAAAACCAATGCACCAATATCGTGAATCCTTATG
521 CAAAAATTGGT-GGAAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTG--T-CTCATG
* * **
2345877 AGAAGACTACT-TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA-TATGAGTATTCCCGTTT
582 AGAAGACTA-TGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTT
* * * * *
2345940 GTCTTATTTATGAGAGAAACATTGATTCTATCAAAAACGGTAGAAAGAAAAACTTTTCTTGCGAC
646 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCTTTTCTTGCGAC
** * **
2346005 ACCAAAGCTTCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTTGATCTGAATCTTGAAAAG
710 ACCAAAGAATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAG
* * * * *
2346070 AATGGAGATTGTAATGAGAATCGATACTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAA
775 AATGGAGATTGTTATGAGAATC-ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGAAAA
* * * * * *
2346135 ATAGGGCGAAGAAAAGGTTTCCATGCAAAAGAAATCATCAATAACATTAATCTTAATGAGGATAA
839 AAAGGGCAAAGAAAAGATTTCCATCCAAAAAAAATCATCAATAACATTAATCTTAATGAGGAGAA
** * *
2346200 TGTGTTTAT-GCTGCCTAATCACAAAATGAATGAAGATTAAAAC
904 TGTGCATATAG-TGCCTAATCACAAAATGAATGAAGATCAATAC
* *** * ** *
2346243 TAGAATCCATGTTTTAATC-TTAATGAGG-ATAATGTGTTTATG-CTGCCTAATCACAAAATGAA
1 TAGAATCCACGTTTGGCTCATT--TGAGGCACAA---ACTTA-GACT---T--T-ACAAAA--AT
* * ** * * *
2346305 TGAAG-AGTAAAACTAGAATCCATGTTTGGCTCATTTGAGGTACGAACTTAGACTTTACGAAAAT
52 TG--GTAG-GAAA--A-AAGCC----TT---TC--TTGAGAAACCAA---AG-C---ACCAATA-
** * * * ** * * ** * * **
2346369 TGGTGGGAAAAAAAACTTTCTTGTGAA-ACTAAAGCATCAAAATCGTGTATCCTTAT-GAGAATA
94 TCAT--G-----TATC-CTAATGAGAAGACT-ATG--T-TTAA--G-GT-GCCTAATCTTGAA-A
* * * * * * * * **
2346432 CTACATTTATGGTGCCTAATCCCAAAAAGAATGGGGAATAGT-ATGAGTAT-TCATGTTTATCTT
142 --AGA---ATGG-G--GAAT-------AGTAT---GAGTATTCAT--GTTTGTCTTATTTA--AG
*** ***** * * * * * * *
2346495 ATTTAAAAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAA-AAAATCTTTCCTTGCGAGACGA
185 A-GACAAACTTTGATTCT-A-TC-A--AAAATA--GTAGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * *
2346558 AAGCATAAATTTCATGTATCCTAATGAAGAGAGTGTATTTTT-AGATCCCAATCTTGAAAACAAT
242 AAGCATCAATGTCATATATCCTAATGAAGAGAATGTGTTTTTGA-ATCCCAATCTTGAAAAGAAT
** * * * * *
2346622 GGAGATTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGTTTTTCAGGAAAAGA
306 GGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATA
* * * ** *
2346687 GGGCAAAGAAAAGTTTTCCATGCAAAAAAAAATTGTCAATATCATTTATCCTAATGAGGAGAATG
371 GGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
* * * * ** * *
2346752 TGTTTATAGTGCCTAATCACAAAATGAATGAAAATCAACACTAGAATCCACATTTGGCTCATTTG
436 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCAATACTAGAATCTATGTTTGCCTCATTTA
* * ** * ** *
2346817 AGGCACAAACTTATACTTTATGAAAATTGGAGGGAAA-AAAGCCTTTCTTGCGAGGCGAAAGCAC
501 AGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAAGAAAGCCTTTCTTGCGAAACCAAAGCAC
* * * * *
2346881 CAATATCATGTATCCTAATGAGAAGGCTATGTTTAAGATGCCTAATCTTGAAAAGAATGGGGAAT
565 CAATATC--GTGT-CTCATGAGAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGAAT
* * *
2346946 AGTATGAGTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAA
627 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * *
2347011 GAAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATATATCCTAATGAAGAGAGTGTGTTTTT
692 -AAAAGCTTTTCTTGCGACACCAAAGAATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
* * *
2347076 GGATCCCAATCTTGAAAAGGATAGAGATTGTTATGAAAATCGATGCTTGTCTTATTTAAGGGATG
756 GGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC-ATGCTTGTCTTATTTAAGGGATG
* * * *
2347141 AACTTTG-TTTT-------TAA--G--AA-AAGA-ATTT-CATGCAAAAGAAAATCATCAATATC
820 AACTTTGATTTTAGGAAAAAAAGGGCAAAGAAAAGATTTCCATCCAAAA-AAAATCATCAATAAC
* * * ** * *
2347191 ATTTATCCTAAAGAGGA-AAGTGTGTTTATAGTGCCTAATCACAAAATGAATGAATATCAATAA
884 ATTAATCTTAATGAGGAGAA-TGTGCATATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
* * * ** * * *
2347254 TGGAATCCATGTTTCGCTCATTTGAGGCATGAACTTATACTTTACGAAAATTGG-AGGGAAAATA
1 TAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTA-GGAAAAAA
* **
2347318 GCCTTT-TCTGCGAAACCAAAGCACCAATATTGTGTATCCTAATGAGAAGACTATGTTTAAGGTG
65 GCCTTTCT-TGAGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTG
* *
2347382 CCTAATCTTGAAAAGAATGGGGAATAGTATGTGTTTTCATGTTTGTCTTATTTAAGAGACAAACT
129 CCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
** * * *
2347447 TTGATTCTATCAAAAACGGTAGAAA-AAAAGCATTTCTTACGACACCAAAGCATCAATGTCATGT
194 TTGATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATAT
* * * * *
2347511 ATCCTAATGAAGAGAATGTATTTTTGGATCCCAATCTTGATAAGAATTGAGATTGTTACGAGAAT
259 ATCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAAT
* *
2347576 CGATGCTTGTCTTATTTAAGGGAGGAACTTTGATTTTAAGGAAAATAGGGCAAA
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAA
2347630 AAACATAAGG
Statistics
Matches: 3488, Mismatches: 596, Indels: 319
0.79 0.14 0.07
Matches are distributed among these distances:
936 144 0.04
937 4 0.00
939 1 0.00
940 2 0.00
941 1 0.00
942 6 0.00
943 1 0.00
944 20 0.01
945 14 0.00
946 114 0.03
947 765 0.22
948 395 0.11
949 18 0.01
950 51 0.01
951 139 0.04
952 63 0.02
953 329 0.09
954 437 0.13
955 134 0.04
956 5 0.00
957 1 0.00
958 5 0.00
959 6 0.00
961 4 0.00
962 1 0.00
963 10 0.00
964 5 0.00
965 2 0.00
966 4 0.00
967 2 0.00
968 1 0.00
970 10 0.00
971 5 0.00
973 2 0.00
975 8 0.00
976 1 0.00
978 5 0.00
979 6 0.00
982 6 0.00
983 5 0.00
985 2 0.00
986 7 0.00
988 1 0.00
990 4 0.00
991 8 0.00
993 1 0.00
994 2 0.00
995 3 0.00
996 2 0.00
997 5 0.00
998 11 0.00
999 1 0.00
1000 5 0.00
1002 5 0.00
1003 4 0.00
1004 1 0.00
1005 1 0.00
1006 3 0.00
1008 5 0.00
1010 16 0.00
1011 85 0.02
1012 6 0.00
1013 4 0.00
1015 3 0.00
1016 11 0.00
1017 4 0.00
1018 2 0.00
1019 7 0.00
1020 1 0.00
1021 2 0.00
1023 1 0.00
1024 355 0.10
1025 186 0.05
1026 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (946 bp):
TAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGAAAAAAG
CCTTTCTTGAGAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCC
TAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
GATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATATAT
CCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCG
ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCAA
TGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATAAATGAAGATCAATACTAGAATCTATGTTTGCCTCATTTAAGGCACGAACTTAGACTTTA
CAAAAATTGGTGGAAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTCTCATGAGAA
GACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCGACACCAAA
GAATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGA
GATTGTTATGAGAATCATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGAAAAAAAGGGC
AAAGAAAAGATTTCCATCCAAAAAAAATCATCAATAACATTAATCTTAATGAGGAGAATGTGCAT
ATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
Found at i:2344674 original size:159 final size:158
Alignment explanation
Indices: 2342473--2346124 Score: 896
Period size: 159 Copynumber: 23.1 Consensus size: 158
2342463 AATTTGAGGC
* * * * * *
2342473 ATAAACTTAGACTTTACAAAAATTAGTGG-CAAGAAAGCCTTTCTTGCGAAACAAAAGCACCAAT
1 ATAAACTTTGA-TTTACAAAAA-TAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * * * * * *
2342537 ACCATGTATCCTAATGAGAAGACTATG-TTTAAGGTGCCTAATATTGAAAAGAATGTG-GAATAG
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAAT-TGAG-ATTG
* *
2342600 -TATGAGTATTCATGTTTGTCTTATATAAGAG
127 TTATGAGAATTCATGTTTGTCTTATTTAAGAG
* * * *
2342631 ACAAACTTTGATTTTATCAAAAATGGTGG-AAAAAAAGCTTTTCTTGCGACACCAAAGCATCAAC
1 ATAAACTTTGA-TTTA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * ** *
2342695 GTCATATATCCTAATGAAGGGAATGTGTTTTT-GAAT-CCTAATCTTGAAAAGAATGGAGATTGT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAG-ATGCCTAATCTTGAAAAGAATTGAGATTGT
** *** * *
2342758 TACAAGAA-TCGACACTTGCCTTATTTAAGGG
128 TATGAGAATTC-ATGTTTGTCTTATTTAAGAG
* * * * * * * ** *
2342789 ATGAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
1 ATAAACTTTGA-TTTACA--AAAAT-AGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
* * * * * * * ** * ** *
2342852 ATATCATTTATCCTAAT-AAGGATAATGTATTTATA-TTGCATAAT-TACAAAATAAAAGA-ATA
62 ATATCATGTATCCTAATGAA-AAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATT
* * *
2342913 GCAATACTG-GAA-TCTATGTTTGGCTCATTTAAG-G
126 G--TTA-TGAGAATTC-ATGTTTGTCTTATTTAAGAG
** * * * * ** * *
2342947 CACGAA-TTTAGACCTTACAAAAATTGGTGG-GAAGAAAGCCCTTCTTGCGAAACAAAAGCACCA
1 -ATAAACTTT-GA-TTTACAAAAA-TAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
* * * * * *
2343010 ATACCATGTATCTTAATGAGAAGACA-ATG--TTTA-A-G-CTAATCTTGAAAAGAATGCGAAAT
62 ATATCATGTATCCTAATGAAAAGA-ATGTGTTTTTAGATGCCTAATCTTGAAAAGAAT-TGAGAT
* * * *
2343069 AG-TAAGAGTATTCATGTTTGTCTTATTTACGAG
125 TGTTATGAGAATTCATGTTTGTCTTATTTAAGAG
* ** * * *
2343102 ACAAACTTTGATTCTATCAAAAACGGTGG-AAAAAAAGCTTTTCTTGCGACACCAAAACATCATT
1 ATAAACTTTGATT-TA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* ** ** * * * *
2343166 GTCATGTATCCTAATGAAGTGAATGCATTTTTTGAT-CCCAATCTTGAAAATAATGGAGATTGTT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATTGTT
* * * *
2343230 ATGAGAA-CCGGTGCTTGTCTTATTTAAGGG
129 ATGAGAATTC-ATGTTTGTCTTATTTAAGAG
** * ** * * * * * ** *
2343260 ATGGACTTTGATTTTA-AGGAAAATAAG-GTAAAGCAAAGATATCCATGCAAAAAAAAAATCATC
1 ATAAACTTTGA-TTTACA--AAAAT-AGTGGAAAAAAAAGCTTTTCTTGC-GAAACCAAAGCATC
* * ** * ** * ** * *
2343323 AATAACAT-TAATCTTAATGAGGAGAATGGGCATATA-ATGCCTAATC-ACAAAATAAATGAAGA
61 AATATCATGT-ATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTG-AGA
* * * * * *
2343385 TTAATTCT-AGAA-TCTACGTTTGGCTCATTTGAG-G
124 TT-GTTATGAGAATTC-ATGTTTGTCTTATTTAAGAG
** * ** * * * * * *
2343419 CACGAACTTAGACTTTATGAAAAT--TGGTAGGAAGAAATCCTTTCTTGAGAAACCAAAG-ATCC
1 -ATAAACTTTGA-TTTACAAAAATAGTGG-A-AAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
* * * ** *** * * * * * * *
2343481 ATATCGTGTATCCTTATGAGAAGGCTACATTTAT-GGTGCCTAATCTCGAAAAAAATGGGGAATA
62 ATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAG-ATT
* ** *
2343545 G-TGTGAGTTTTCAGGTTTGTCTTATTTAAGAG
126 GTTATGAGAATTCATGTTTGTCTTATTTAAGAG
* * * * * *
2343577 ATAAACATTGATTCTATCAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAAT
1 ATAAACTTTGATT-TA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* ** * * *
2343642 GTCATGTATCCTAATGAAGGGAATGTGTTTCT-GAAT-CCCAATCTTGAAAAGAATGGAGATTGT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAG-ATGCCTAATCTTGAAAAGAATTGAGATTGT
** * * *
2343705 TACAAGAA-TCGATGCTTGTCTTATTAAAGGG
128 TATGAGAATTC-ATGTTTGTCTTATTTAAGAG
* * * * * * ** ***
2343736 ATGAACTTTGATATTA-AGTAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAAAAAATTGTCA
1 ATAAACTTTGAT-TTACA--AAAATAGTGG-AAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
* * *** * * ** * * *
2343799 ATATCATTTATCCTAAAGAGGGGAATATGTTTATAG-TGCCTAATC-AAAAAATAAATGAAGATC
62 ATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTG-AGATT
* * * * *
2343862 ATTATTAGAATTCATGTTTGCCTCATTTGAG-G
126 GTTATGAGAATTCATGTTTGTCTTATTTAAGAG
** * * *
2343894 CACGAACTTAGACTTTACAAAAATTAGTGG-AAAGAAAGCTTTTCTTGCGAAACCAAAGCACCAA
1 -ATAAACTTTGA-TTTACAAAAA-TAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * * * * * * *
2343958 TATCGTGTCTCCTGA-G-AAA-ACTATG-TTTAAGGTGCTTATTCTTGAAAAGAA-TGAGGAGTA
63 TATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGA-GA-TT
* *
2344018 G-TATGAGTATTCATTTTTGTCTTATTTAAGAG
126 GTTATGAGAATTCATGTTTGTCTTATTTAAGAG
** * * *
2344050 ATAAACTTTGATTTTACCAAAAACGGTGG-AGAAAAAGCTTTTCTTGCGACACC-AAGAATCAAT
1 ATAAACTTTGA-TTTA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * * * * * * *
2344113 GTCCTGTATCCTAATGAAGAGAGTGTGTTTGTGGAT-CCCAATCTTGAAAACAATGGAGATTGTT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATTGTT
* *
2344177 ATGAGAA-TCACTGCTTGTCTTATTTAAGGG
129 ATGAGAATTCA-TGTTTGTCTTATTTAAGAG
* * * * * *** * ** ***
2344207 ATGAACTTTGTTTTCTAGGAAAAAAAAG-GGCAAAGAAAAG-TTTTCCACCTAAAAAAAATTGTC
1 ATAAACTTTG-ATT-TA--CAAAAATAGTGG-AAAAAAAAGCTTTTCTTGCGAAACCAAAGCATC
* * * ** *
2344270 AATATCATTTATCCTAATGAGAAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAA-TGAAAA
61 AATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAA-GAATTG-AGA
*** * * * * *
2344332 TCAATACTG-GAATCCACGTTTGGCTCATTTGAG-G
124 TTGTTA-TGAGAATTCATGTTTGTCTTATTTAAGAG
* * * * * *
2344366 CACAAACTTTTACTTTACGAAAAT--TGGAGGGAAAAAAGCTTTTCTTGCAAAACCAAAGCACCA
1 -ATAAACTTTGA-TTTACAAAAATAGTGGA--AAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
* * * * * * * * * *
2344429 ATATCATGTGTCCTAACGAGAAGACTATG-TTTAAGGTGCCTAATCTTGAACAGAATGGAGAATA
62 ATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAG-ATT
* *
2344493 G-TATGTGTATTCATGTTTGTCTTATTTAAGAG
126 GTTATGAGAATTCATGTTTGTCTTATTTAAGAG
* * *
2344525 ACAAACTTTGATTCTATCAAAAATAGTGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATCAAT
1 ATAAACTTTGATT-TA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * *
2344590 GTCATGTATCCTAATGAAAAGAATGTATTTTTAGAT-CCCAATCTTGAAAAGAATTGAGATTGTT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATTGTT
* * * *
2344654 ACGAGAATTGATGCTTGTCTTATTTAAGGG
129 ATGAGAATTCATGTTTGTCTTATTTAAGAG
** * * * ** *
2344684 AGGAACTTTGATTTTA-AGGAAAATA--GGACAAAAAAA-ATTTTCAATGCAAAAGAAAATCATC
1 ATAAACTTTGA-TTTACA--AAAATAGTGGA-AAAAAAAGCTTTTC-TTGCGAAACCAAAGCATC
* ** * * **
2344745 AATATCAT-TAATCATAATGAGGAGAATGTGTTTATAG-TGCCTAATCAT-AAAATGAATAAAGA
61 AATATCATGT-ATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAA-GAATTGAGA
*** * * * * *
2344807 TCAATACT-AGAA-TCTACGTTTGCCTCAATTGAG-G
124 TTGTTA-TGAGAATTC-ATGTTTGTCTTATTTAAGAG
* * * ** * * * *
2344841 CATGAA-TTTAGACTTTAAAAAAATTGGTGGGCAGAAAAGCTTTTCTTGTGAAACTAATGCATCA
1 -ATAAACTTT-GA-TTTACAAAAA-TAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
** * * *** * * * * * * * *
2344905 ATATCATGTATCCTTGTGAGAAGACTACATTTAT-GGTGCCTAATCCTGAAAGGAGTGGGGAATA
62 ATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAG-ATT
* *
2344969 G-TATGGGTATTCATGTTTGTCTTATTTAACG-G
126 GTTATGAGAATTCATGTTTGTCTTATTTAA-GAG
* * * * * *
2345001 ACAAACTTTGATTCTATCAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGT
1 ATAAACTTTGATT-TA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * ** * * * *
2345066 GTCATGTATCCTAATGTAGAGGGTGTGTTTTTGGAT-CCCAATCTTGAAAAGGATGGAGATTGTT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATTGTT
** * * *
2345130 ATGAGAATGGATGCTTGCCTTATTTAAGGG
129 ATGAGAATTCATGTTTGTCTTATTTAAGAG
* * * * * * * * * ** *
2345160 ATGAGCTTTGATTTTATGAAAAATAGAGTAAAGAAAAAGATTTCCATGCAAAAGAAAATCATCAA
1 ATAAACTTTGA-TTTA-CAAAAATAGTGGAAA-AAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * ** * * ** *
2345225 CATC-TTTAATCTTAATGAGGAGAGT-TCATTTTATAG-TGCCTAATC-ACAAATTGAA-TGAAG
63 TATCATGT-ATCCTAATGAAAAGAATGT-GTTTT-TAGATGCCTAATCTTGAAA-AGAATTG-AG
**** * ** * * *
2345285 ATCAACACT-AGAATCCACATTTGGCTCA-TT-GGAG
123 ATTGTTA-TGAGAATTCATGTTTGTCTTATTTAAGAG
* * * * *
2345319 GTACGAACTTTGACTTTACAAAAATTTGTGG-GAAAAAAGCCTTTCTTGCGAAACCAAAGCACCA
1 ATA--AACTTTGA-TTTACAAAAA-TAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCA
* * ** * * * * * * *
2345383 ATATCGTGTATCCTAAAGAAAAGGCTATG-TTTAAGGTGCCTAATCTTGAAAAGAGTGGGGAATG
62 ATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATTG
* * * * * *
2345447 GTAGGGGTATTCATGTTTATCTTATTTATGAG
127 TTATGAGAATTCATGTTTGTCTTATTTAAGAG
* * * * * * * ** *
2345479 ATAAACTTTGATTTTATCCAACATGGTAGAAAGAAAAGTTTTTCTTGCGACATGAAAGCGTCAAT
1 ATAAACTTTGA-TTTA-CAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * * * * *
2345544 GTCATATATCCTAAAGAAGAGAATGAGTTTTTGGAT-CCCAATCTTGAAAAGAA-TGAAGATTGT
64 ATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTG-AGATTGT
* *
2345607 TATGAGAA-TCGATGCTTGTCTTATTTAAGGG
128 TATGAGAATTC-ATGTTTGTCTTATTTAAGAG
* * * * ** **
2345638 ATGAACTTTGATATTA-AGGAAAATAG-GGCAAAGAAAAG-ATTTCAATG-GAAAAGAAAATTAT
1 ATAAACTTTGAT-TTACA--AAAATAGTGG-AAAAAAAAGCTTTTC-TTGCG-AAACCAAAGCAT
* * ** * ** *
2345699 CAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGTA-TGAAG
60 CAATATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAA-GAATTG-AG
** ** * *
2345761 ATCATTACAAGAATCCATGTTTGTCTCATTTAAG-G
123 ATTGTTATGAGAATTCATGTTTGTCTTATTTAAGAG
* * * * * * * * * *
2345796 CACAAACTTAGACTTTACAAAAGTTGGTGG-GAAAAAAGCCTTTCTTTCAAAACCAATGCACCAA
1 -ATAAACTTTGA-TTTACAAAA-ATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * * ** * * * *
2345860 TATCGTGAATCCTTATGAGAAG-A-CTACTTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT-
63 TATCATGTATCCTAATGAAAAGAATGTGTTTTTA-GATGCCTAATCTTGAAAAGAATTGAGATTG
* * ** *
2345922 ATATGAGTATTCCCGTTTGTCTTATTTATGAG
127 TTATGAGAATTCATGTTTGTCTTATTTAAGAG
* * ** * * *
2345954 AGAAACATTGATTCTATCAAAAACGGTAGAAAGAAAAA-CTTTTCTTGCGACACCAAAGCTTCAA
1 ATAAACTTTGATT-TA-CAAAAATAGTGGAAA-AAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * *
2346018 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTTGAT--CTGAATCTTGAAAAGAATGGAGATTG
63 TATCATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCT-AATCTTGAAAAGAATTGAGATTG
* ** *
2346081 TAATGAGAA-TCGATACTTGTCTTATTTAAGGG
127 TTATGAGAATTC-ATGTTTGTCTTATTTAAGAG
*
2346113 ATGAACTTTGAT
1 ATAAACTTTGAT
2346125 ATTAAGTAAA
Statistics
Matches: 2444, Mismatches: 840, Indels: 419
0.66 0.23 0.11
Matches are distributed among these distances:
153 3 0.00
154 101 0.04
155 98 0.04
156 44 0.02
157 216 0.09
158 699 0.29
159 957 0.39
160 273 0.11
161 52 0.02
162 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
ATAAACTTTGATTTACAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
CATGTATCCTAATGAAAAGAATGTGTTTTTAGATGCCTAATCTTGAAAAGAATTGAGATTGTTAT
GAGAATTCATGTTTGTCTTATTTAAGAG
Found at i:2346304 original size:75 final size:75
Alignment explanation
Indices: 2346181--2346331 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
2346171 ATCAATAACA
*
2346181 TTAATCTTAATGAGGATAATGTGTTTATGCTGCCTAATCACAAAATGAATGAAGATTAAAACTAG
1 TTAATCTTAATGAGGATAATGTGTTTATGCTGCCTAATCACAAAATGAATGAAGAGTAAAACTAG
2346246 AATCCATGTT
66 AATCCATGTT
2346256 TTAATCTTAATGAGGATAATGTGTTTATGCTGCCTAATCACAAAATGAATGAAGAGTAAAACTAG
1 TTAATCTTAATGAGGATAATGTGTTTATGCTGCCTAATCACAAAATGAATGAAGAGTAAAACTAG
2346321 AATCCATGTT
66 AATCCATGTT
2346331 T
1 T
2346332 GGCTCATTTG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (75 bp):
TTAATCTTAATGAGGATAATGTGTTTATGCTGCCTAATCACAAAATGAATGAAGAGTAAAACTAG
AATCCATGTT
Found at i:2346623 original size:158 final size:159
Alignment explanation
Indices: 2346456--2347134 Score: 419
Period size: 159 Copynumber: 4.3 Consensus size: 159
2346446 CCTAATCCCA
* * *
2346456 AAAAGAATGGGGAATAGTATGAGTATTCATGTTTATCTTATTTAAAAGACAAACTTTGATTCTAT
1 AAAAGAATGGAGAATAGTATGAGAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT-TAT
* *
2346521 CAAAAACGGTGGAAA-AAAATCTTTCCTTGCGAGACGAAAGCATAAATTTCATGTATCCTAATGA
65 CAAAAACGGTGGAAAGAAAATCTTTCCTTGCGAGACGAAAGCATCAATATCATGTATCCTAATGA
2346585 AGAGAGTGTATTTTTAGAT-CCCAATCTTG
130 AGAGAGTGTATTTTTAGATGCCCAATCTTG
* * * * ** ** *
2346614 AAAACAATGGAG-ATTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTG-TTTTT
1 AAAAGAATGGAGAATAG-TATGAGAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTTAT
* * * ** *** *
2346677 CAGGAAAA-GAG-GGCAAAGAAAAGT-TTTCCATGCAAAAAAAAATTGTCAATATCATTTATCCT
65 CA--AAAACG-GTGG-AAAGAAAA-TCTTTCCTTGCGAGACGAAAGCATCAATATCATGTATCCT
* * * * * **
2346739 AATGAGGAGAATGTGTTTATAG-TGCCTAATC-AC
125 AATGAAGAGAGTGTATTTTTAGATGCCCAATCTTG
* ** * ** * * * *
2346772 AAAATGAAT-GAAAATCAACACT-AGAATCCACATTTGGCTCATTT-GAGGCACAAACTTAT-AC
1 AAAA-GAATGGAGAAT-AGTA-TGAGAATTCATGTTTGTCTTATTTAAAAG-ACAAACTT-TGA-
* ** * ** * *
2346833 TTTATGAAAATTGGAGGGAAA-AAAGCCTTT-CTTGCGAGGCGAAAGCACCAATATCATGTATCC
60 TTTATCAAAAACGG-TGGAAAGAAAATCTTTCCTTGCGAGACGAAAGCATCAATATCATGTATCC
* *
2346896 TAATG-AGA-AG-GCTATGTTTAAGATGCCTAATCTTG
124 TAATGAAGAGAGTG-TAT-TTTTAGATGCCCAATCTTG
* * * * *
2346931 AAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTAT
1 AAAAGAATGGAGAATAGTATGAGAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT-TAT
* * * * * * *
2346996 CAAAAACGGTAGAAAGAAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATATATCCTAATGA
65 CAAAAACGGTGGAAAGAAAATCTTTCCTTGCGAGACGAAAGCATCAATATCATGTATCCTAATGA
* *
2347061 AGAGAGTGTGTTTTTGGAT-CCCAATCTTG
130 AGAGAGTGTATTTTTAGATGCCCAATCTTG
* * * * *
2347090 AAAAGGATAGAG-ATTGTTATGA-AAATCGATGCTTGTCTTATTTAA
1 AAAAGAATGGAGAATAG-TATGAGAATTC-ATGTTTGTCTTATTTAA
2347135 GGGATGAACT
Statistics
Matches: 376, Mismatches: 109, Indels: 71
0.68 0.20 0.13
Matches are distributed among these distances:
155 1 0.00
156 7 0.02
157 22 0.06
158 148 0.39
159 170 0.45
160 16 0.04
161 11 0.03
162 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (159 bp):
AAAAGAATGGAGAATAGTATGAGAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTTATC
AAAAACGGTGGAAAGAAAATCTTTCCTTGCGAGACGAAAGCATCAATATCATGTATCCTAATGAA
GAGAGTGTATTTTTAGATGCCCAATCTTG
Found at i:2348543 original size:475 final size:476
Alignment explanation
Indices: 2347637--2356147 Score: 10540
Period size: 475 Copynumber: 18.0 Consensus size: 476
2347627 AAAAAACATA
* * * * *
2347637 AGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATAAAGATCAAAACTAGAATCTACGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * *
2347702 GCTCAATTGAGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAAGCTTTTCTTGTGAAA
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAA
* * * * * * * *
2347767 CCAATGCATCAATATCATGTATCCTTATTAGAAGACTACATTTATGGT-CCTTAATCCTGAAAGG
130 CCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCC-TAATCTTGAAAAG
* * * *
2347831 AGTGGGGAGTAGTATG-GATATTCATGTTTGTCTTATTTAACAGACAAACTTTTATTCTATCAAA
194 AATGGGGAATAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
*
2347895 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGAG
258 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG
** * *
2347960 GGTGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTACGAGAATGGATGCTTG-CTTT
323 AATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC-TT
* * * *
2348024 ATTTAAGGGATGAGCTTTGATTTTAAGAAAAATAGGGGAAAGAAAAAATTTCCATGCAAAAGAAA
387 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
2348089 ATCATCAATATCTTTAATCTTAATG
452 ATCATCAATATCATTAATCTTAATG
* * * * *
2348114 AGGAGAATTTATTTATAGTGCCTAATCACAAAATGAATGAAGGTCAACAGC-AGAATTCACGTTT
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATA-CTAGAATCCACGTTT
* * * * * *
2348178 GGCTCATTTAAGGTACGAACTTCGACTTTACAAAAATTAGCGGCAAAAAAGCCTTTCTTGCGAAA
65 GGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * * *
2348243 CCAAAGCACCAACATCGTGTAT-CTTAAAGAGAAGGCTATGTTTAAGGTGACTAATCTTGAAAAG
130 CCAAAGCACCAATATCGTGTATCCTT-ATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAG
* * * * * *
2348307 AATGCGGAATAGTATGACTATTCATGTTTGTCTTATTTATGGGGCAAA-TTTGATTCTATCCAAA
194 AATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * ** * * *
2348371 ACGGTAGAAAGAAAAGCTTTTGTTACGACATGAAAGCATGAATGTCATATATCCTAAAGAAGAGA
259 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGA
*
2348436 ATGAGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
324 ATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
* * *
2348501 TTAAGGGATGAACTTTGATATTAAGTAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
389 TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* *
2348566 CATCAATAACTTTAATCTTAATG
454 CATCAATATCATTAATCTTAATG
* * * * *
2348589 ATGAGAATGTGTTTATAGCGCCTAATCACAATATGAATGAAGATCATTACTAAAATCCACGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * * * *
2348654 GCTCATTTGAGGTACGAACTTGGACTTTACAAAAATTGGTGAGAAAAAATCTTTTCTCGTGAAGC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * * * * *
2348719 CAAAGCACCAATATTGTGTATCCTAAAGAGAAGACTATGTTTAAGTTGCCTAATCTTGAAATGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* *
2348784 TGGGGAATAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGAC--AC----A---TATCAAAAAG
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
** * *
2348840 GGCAGAAAGAAAAGCTTTTCTTGCGACACGAAAGCATAAATGTCATGTATCCTAATGAAGAGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * *
2348905 GTGTTTTTGGATCCCAATCTTAAAAAGAATGTAGATTGTTATGAGAATCGATAGC-TGTCTTATT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT-GCTTGTCTTATT
* * *
2348969 TAAGGGATGAGCTTTGATTTTAAGAAAAATAGCGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * **
2349034 ATCAATATCATTTATCCTAAAA
455 ATCAATATCATTAATCTTAATG
* * * * *
2349056 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGTATGAAGATCATTACAAGAATCCATGTTTC
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * * *
2349121 TCTCATTTAAGGCACAAACTTAGACTTAACAAAAGTTGGTGGGAAGAAAGCCTTTCTTGCAAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * **
2349186 CAAAGCACTAATATCGTGTATCCTTATGAGAAGACTACT-TTTATGGTGCCTAATCCCGAAAAGA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTA-TATTTAAGGTGCCTAATCTTGAAAAGA
* * * * * * *
2349250 ATGGGGATTAGTATGTGTATTCTTGTTTGTCTTATTTATGAGAGAAACTTTGGTTTTATCAAAAA
195 ATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *
2349315 CAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGGAGAGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * * *
2349380 TGTG-TTTTGGCTCCAAATCTTGAAAAGAATGGAGATTGTTATGAGAATTGATGCTTGTCTTATT
325 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* * * * *
2349444 TAAAGGATGAGCTTTGATATTAAGTAAAATAGGGCAAAGAAAAGGTTTCCATGCAAAAG-AAATC
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
*
2349508 ATCAATAACATTAATCTT-ATGG
455 ATCAATATCATTAATCTTAAT-G
* * * * *
2349530 AGGAGAATGTGTTTATACTGCCTAATCACATAATGAATCAAAGATTAATACTAGAATCCATGTTT
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCAATACTAGAATCCACGTTT
* * * *
2349595 GGCTCATTTGAGGCACGAACTTAGACTTTACGAAAATTGGTGGGAAGAAAGACTTTCTTGTGAAA
65 GGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * * * * * ***
2349660 CTAAAGCATCAATGTCGTGTATCCTTATGAGAAGACTACATTTATGGTGCATGATCCCAAAAAGA
130 CCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGA
* * * ** *
2349725 ATGGGGAATAGTATGGGTGTTCTTGTTTGTCTTATTTGTGAAACAAACTTTGATTCTATCAAAAA
195 ATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * *
2349790 TGGTGGAAAGAAAAGCTTTTCTTGCGATACCATAGCATCAATGTCATGTATACTAATGAAGAGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * * * * * * * *
2349855 TGCGTTTTTGGATCCTAATCATAAAAAGGATGGAGATTATTTCTAGAATTGATGCTTGTCTTATT
325 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
2349920 T-AGAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
390 TAAG-GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * *
2349984 CATCAATAACATTTATCCTAAAG
454 CATCAATATCATTAATCTTAATG
* ** * * * * *
2350007 AGGAGAATGTGTTTATAGTTCCTAATGGCAAAATAAAATGAAGATCATTTCTGGAATCCATGTTT
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-GAATGAAGATCAATACTAGAATCCACGTTT
* * * * * * * *
2350072 GCCTCATTTAAGGCACGAACTTAGACTTTTCAAAAATTAGTGGGAAGAAAGCTTTTGTTCCGAAA
65 GGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * *
2350137 CCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGT
130 CCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGA
* ** * * *
2350202 AGGGGGAATAGTACAAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTCGATTCTATAAAAAA
195 ATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *
2350267 CGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* ** *
2350332 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATGGGCACTAGAATCGATGCTTGTCTTATT
325 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* *
2350397 TAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATC
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * *
2350462 ATCGATATCATCATTGTTAATG
455 ATCAATATCATTAATCTTAATG
* * **
2350484 AGGAGATTGTGTTTATAGTACCTAATCACAAAATGAAACAAGATCAATACTAGAATCCACGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * * * *
2350549 TCTCGTTTGGGGCACGAACTTAGACTTTTCAAAAATTTGTAGGAAGAAAGCCTTTCTTGTGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * * * * * *
2350614 CAAAGCATCAATATCATGTATCCTTATGAGAGGACTACATTTATGGTGCCTAATCCTGAAAGGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * ** *
2350679 TGGGGAATAGTAAGAGTATTCATGTTTATCTTATTTAAGAGATGAACTTTGATTCTATCAAAAAT
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * * *
2350744 GGTGGAAAGAAAAGCTTTTCTCGCAACACCAAGGCATTAATGTCATGTATCCTAATGAACAGAGT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* *
2350809 GTGTTTTTGGAT-CCAATTCTTGAAAATG-ATGGAGATTGTTACGAGAATAGATGCTTGCCTTAT
326 GTGTTTTTGGATCCCAA-TCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
* * * *
2350872 TTGAA-GGATGACCTTTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAATAGAAAA
389 TT-AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* *
2350936 TTATCAATATCTTTAATCTTAATG
453 TCATCAATATCATTAATCTTAATG
* * * *
2350960 AGGAGAATATGTTTATAGTGCTTAATTACAAAATGAATGAAGATCAATACTAGAATCCACATTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * *
2351025 CCTCATTTGAGGTACGAACCTAGACTCTATAAAAATTGGTAGGAAAAAAAGCCTTTCTTGCGAAA
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTTGCGAAA
* * * *
2351090 CTAAAGCATCAATATTGTGTATCCTTATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGA
130 CCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGA
* *
2351155 ATGGGGAATAGAATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAA
195 ATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * *
2351220 TGGTGGAAAGAAAAGCTTTTCTTGCGGCACGAAAGCATCATTGTCATGTATCATAATGAAGAGAA
260 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * * * *
2351285 TGTGTTTTTGGATCCCAATCTTCAAAGGATTGGAGATAGTTACGAGAATCGATGCTTATCTTATT
325 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
*
2351350 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* *
2351415 ATCAATATCATTTATCCTAATG
455 ATCAATATCATTAATCTTAATG
* * *
2351437 AGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTA
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * **
2351502 GCTCATTTGAGGCACGAATTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTATGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * *
2351567 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTT-ATGTGCCTAATCTTGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * *
2351631 TGGGGATTAGTATGACTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * * *
2351696 GATGGAAA-AAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATGTATCCTATTAAAGGGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * *
2351760 GTGTTTTTGGATCCCGATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCTTTTTT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* * *
2351825 CAGGGATGAACTTTGATTTTAAAGAAAATATGGCAAA-AATAAGATTTCCATGCAAAA-AAAATC
391 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA-AAGATTTCCATGCAAAAGAAAATC
* * *
2351888 ATCCACATCACTAATCTTAATG
455 ATCAATATCATTAATCTTAATG
* * * * * **
2351910 AGGAGAATGTGTTTATAATACCTAATCACAAAATGAATGAAAATCAATACAAGAATCTATTTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * * * * * * **
2351975 TCTTATTCGAGGCTCAAACTTAGTCTTTACAAAAAATGGCGGGAAAAAAGCATTTCTTGTGAAGT
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* *
2352040 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * * * * * * *
2352105 TGCGAAATAGTATGACTATTCATGTTTGTCTTATTTATGGGACAAACTTTAATCCTATTAAAAAC
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * *
2352170 GGGGGAAA-AAAAG-TATTT-TTGTGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGAGAA
261 GGTGGAAAGAAAAGCT-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * * * * * *
2352232 TGTGTTTTTGGATCCCAATCTTGAAATGAATTGATATTATTACAAGAATCGATGCTTTTTTTATT
325 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
*
2352297 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATC
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
*
2352362 ATCAATATAATTAATCTTAATG
455 ATCAATATCATTAATCTTAATG
* * *
2352384 AGGAGAATGTGTTTATAATGCCTAATCATAAAATGAATAAAGATCAATACTAGAATCCACGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * *
2352449 TCTCAATTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * * * * * * ** *
2352514 CAAAGGATCAATATCATGTATCTTTATGAGAAGACTACAATTATGGTGCCTAATCCCGAAAACAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * * * * *
2352579 TGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAAT
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* *
2352644 GGTGG-AA-AAAAGCATTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAGAGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * * * * *
2352707 GTGTTTTTGGATCCTAATCTTGAAAAGAATTGAGATTGCTACAAGAATCTATGCTTATCTTATTT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* * *
2352772 AAGGGATGAACGTAGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTCCATGCAAAAGAAAATCA
391 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* *
2352837 TCAATATCGTTAAGCTTAATG
456 TCAATATCATTAATCTTAATG
* *
2352858 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATGCTAGAATCCATGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * *
2352923 GCTCACTTGAGGCATGAACTTAGACTTTACGAAAATTGGTGAGAAGAAAGACTTTCTTGCGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
** * * * * * * *
2352988 CAAAGCATTAATATAGTGTTTCCTTAAGAGATGACTACATTTATGGTGCCTAATCTCGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * * * * *
2353053 TGGGGAATAGTAAGAGTATTCATGTTTCTCTTATTTGAGAGATAAACTTTGGTTCTATCAAAAAT
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * ** * *
2353118 GGT-GAAA-AAAAGCATTTCCTGCGACGCCAAAGTGTCAATGTCATGTATCCTAAGGAAGAAAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * *
2353181 GTGTTTTTGGATCCTAATCTTGAAAAGAATTGATATTGTTACGAGAATCGATGCTTGTCTTATTT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* *
2353246 AAGGGATGAACTTAGATTTTAAGGAAAATAAGGCAAAGAAAAGA--T---T-----------TCA
391 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
*
2353295 TCAATATCATTAAGCTTAATG
456 TCAATATCATTAATCTTAATG
* * * * *
2353316 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCTATGTTTC
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * ** *
2353381 TCTCATTTGAGGCACAAACATAGACTTTACAAAAATTGCAGGGAAAAAAGCTTTTCTTGCGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * * * *
2353446 CAAAGCACCAATATCTTGTATCCTAATGAAAAGACTATGTTTAAGGTACCTAATCTTGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
** * * *
2353511 TATGGAATAGTATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAA
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * *
2353576 GGTGGGAA-AAAAGCATTTCTTTCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGAGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * *
2353640 GTGTTTTTGGATCTCAATCTTGAAAAGAATTGAGATTGTTACGAGAATCGATGCTTGTCTTAGTT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* *
2353705 AAGGGATGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCA
391 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
*
2353770 TCAATATCATTAAGCTTAATG
456 TCAATATCATTAATCTTAATG
*
2353791 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * ** * *
2353856 GCTCATTTGAGGTATGGCCTTAGACTTTACAAAAATTGGCGGGAAGAAAGCCTTTCTTGCGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
** * * * * * **
2353921 CAAAGCGTCAATATAGTGTATCCTTAAGAGAAGAGTACATTTATGGTGCCTAATCCCGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * *
2353986 TGGGGAATAGTATGAGTATTCATGTTTCTCTTATTTAAGAGATAAAC-TTGATTCTATCAAAAAT
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* ** *
2354050 GGTGGGAA-AAAAGCATTTT-TTGCGACACCAAAGTGTCAATGCCATGTATCCTAATGAAGAGAA
261 GGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * *
2354113 TCTGTTTTTGGATCCCAATCTTGAAAAGAATTGAGATTGTTACGAGAATCGATGTTTGTCTTATT
325 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* *
2354178 TAAGGGATGAACTTAGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCGATGCAATAA-AAAAT
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AAGAAAAT
*
2354242 CATCAATATCATTAAGCTTAATG
454 CATCAATATCATTAATCTTAATG
* *
2354265 AAGAGAATGTGTTTATAGTGCCGAATCAC--AA--AAT---G----A-A-T-G-A---A------
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
*
2354306 G---A-TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * * * * *
2354367 CAAAGCATCAATATCGTGTATCCTTAAGAGAAGACTACATTTATGGCGCCTAATCCTGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * ** * * * *
2354432 TAGGGAATAGTAAGAGTATTCATGTTTCACTTATTTGAGAGATAAACTTTGATTCTGTCAAAAAT
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
** * * ** *
2354497 GGTAAAAAAAAAAGCATTTCTTGCGACACCAAAGTGTCAATGACATGTATCCTAATGAAGAGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * * * * *
2354562 GTGTTTTTGGATCCCAATCTTGAAAAGAATTGCA-AATATTATGAGAATCAATGCTTATCTTATT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAA-TGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* *
2354626 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGGTTTCCATGCAATAGAAAATC
390 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* *
2354691 ATCAATAGCATTAAGCTTAATG
455 ATCAATATCATTAATCTTAATG
* * * * *
2354713 AGAAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCTATGTTTG
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * ** *
2354778 TCTCATATGAGGCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
* * *
2354843 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGATGCCTAATCTTGAAAAGAA
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
* * * * *
2354908 TGTGAAATAGTATGAGTATTAATGTTTGACTTATTTCAGAGACAAACTTTGATTCTATCAAAAAC
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * *
2354973 AGTGAAAAGAAAAGCTTTTCTGGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* * ** * *
2355038 GTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGGTAATTACGAGAATCAATGCTTATCTTATTT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* *
2355103 AAGGGATGAACTTTGATTTTAAGGAAAGTAGGGCAAAG-AAAGATTTCCAAGCAAAAGAAAATCA
391 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* *
2355167 TCCATATCATTAATTTTAATG
456 TCAATATCATTAATCTTAATG
* * * * * * *
2355188 AGCAAAATGTGTTTATTGTGCCTAATCACAAAATGAATAAATATCAAAACTAGAATCCACGTTTA
1 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
* * * * * *
2355253 ACTCGTTTGAGGCACGAATTTAGACTTTACATAATTTGGTGGGAAAAAAGCCTTTCTTGTGAAAC
66 GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
** * * * * * *
2355318 CAAAGTGCAAATATCATGTATTCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAT
131 CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
*
2355383 TGGGGAATAGTATGAGTATTCATGTTGGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
196 TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * *
2355448 GGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCTATGTCATGTATCCTAATGAAGGGAAT
261 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
* ** * *
2355513 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTATTGTGAGAATTGATTCTTGTCTTATTT
326 GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* *
2355578 AAGGGATGAACTTTGATTTTGAA-GAATATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC
391 AAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
*
2355642 ATAAATATCATTAATCTTAATG
455 ATCAATATCATTAATCTTAATG
* * ** *
2355664 AGGAAAATGTGTTTATAGTGTGCTAATCACAAAATGAATGATTATCAAAACTAGAATCCACGTTT
1 AGGAGAATGTGTTTATAGTG-CCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTT
* ** * * * * *
2355729 GCCTCATTTGAGGCATAAACTTAGACTTTACAAAATTTGGTAGGAAAAAAGCTTTTCTTGTGAAC
65 GGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * * *
2355794 CCAAAGCACTAATATCGAGTATCCTAAT-AGAAGACCATATTTATGGTGCCTAATCTTGAAAAGA
130 CCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGA
* * * *
2355858 ATGGGGAATAGTATGAGTCTTCATATTTGTCTTATTTAAGAGACAAAATTT-ATTTCTATAAAAA
195 ATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAA
* * * * *
2355922 ACGGTGGAAAAAAAAGGTGTTCTTGCGGCACCAAAGCATCAATGTCTTGTATCCTAATGAAGAGA
259 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGA
* * * * * *
2355987 ATGTGTTTCTGGATCCTAATCTTGAAAAGAGTGGAGATTGTTGCAAGAATCGATGCTTGTCTTAG
324 ATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
* * * * * * *
2356052 TTAAGGGATGAACTTTGATTTGAAAGAATATAGGGCAAAGAAAATATTTCCCTACCAAAGAAAAT
389 TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
*
2356117 CATCAATATCATTAATTTTAATG
454 CATCAATATCATTAATCTTAATG
2356140 AGGAGAAT
1 AGGAGAAT
2356148 CTGATGACAA
Statistics
Matches: 6966, Mismatches: 966, Indels: 205
0.86 0.12 0.03
Matches are distributed among these distances:
446 157 0.02
447 26 0.00
448 207 0.03
449 2 0.00
450 3 0.00
452 3 0.00
455 1 0.00
456 1 0.00
458 245 0.04
459 155 0.02
460 2 0.00
461 3 0.00
462 2 0.00
463 2 0.00
464 1 0.00
466 1 0.00
467 400 0.06
468 3 0.00
469 3 0.00
470 4 0.00
472 3 0.00
473 329 0.05
474 1356 0.19
475 1515 0.22
476 1459 0.21
477 1072 0.15
478 11 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTG
GCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
CAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATATTTAAGGTGCCTAATCTTGAAAAGAA
TGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAAT
GTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
TCAATATCATTAATCTTAATG
Found at i:2349483 original size:158 final size:158
Alignment explanation
Indices: 2348845--2354291 Score: 1578
Period size: 159 Copynumber: 34.5 Consensus size: 158
2348835 AAAAGGGCAG
* * * * *
2348845 AAAGAAAAGCTTTTCTTGCGACACGAAAGCATAAATGTCATGTATCCTAATGAAGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * * *
2348910 TTTGGAT-CCCAATCTTAAAAAGAATGTAGATTGTTATGAGAATCGATAGC-TGTCTTATTTAAG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCAT-GCTTGTCTTATTTAA-
* *
2348973 GGATGAGCTTTGATTTTAAGAAAAATAGCGC
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
* * * ** * * *
2349004 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-AAAGGAGAATGTGT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAA-GAGAATGTGT
* ** * * ** ** * * *
2349068 TTATAGTGCCTAATC-ACAAAATGTATGAAGATCATTACAAGAATCCATGTTTCTCTCATTTAAG
65 TTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAAG
** * * * * * *
2349132 GCACAAACTTAGA-CTTAACAAAAGTTGGTGG
129 G-ATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * * * *
2349163 GAAG-AAAGCCTTTCTTGCAAAACCAAAGCA-CTAATATCGTGTATCCTTATG-AGAAGACTACT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATC-AATATCATGTATCCTAATGAAG-AGAAT-GT
** * * * * * *
2349225 -TTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAG-TATGTGTATTCTTGTTTGTCTTATTTA
63 GTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCCATGCTTGTCTTATTTA
* * ** * *
2349288 TGAGA-GAAACTTTGGTTTTATCAAAAACAGTAG-
127 AG-GATG-AACTTTGATTTTAAGAAAAATAG-GGC
* * * *
2349321 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGGAGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* **
2349386 T-TGGCT-CCAAATCTTGAAAAGAATGGAGATTGTTATGAGAATTGATGCTTGTCTTATTTAAAG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTT-AAG
* * *
2349449 GATGAGCTTTGATATTAAGTAAAATAGGGC
129 GATGAACTTTGATTTTAAGAAAAATAGGGC
* * * * * * * *
2349479 AAAGAAAAGGTTTCCATGCAAAA-GAAATCATCAATAACAT-TAAT-CTTATGGAGGAGAATGTG
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAAT-GAAGAGAATGTG
** ** * ** ** * * *
2349541 TTTATACTGCCTAATC-ACATAATGAATCAAAGATTAATACT-AGAATCCATGTTTGGCTCATTT
64 TTTATGGTGCCTAATCTTGA-AAAGAAT-GGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTT
* * * * * * *
2349604 GAGGCACGAACTTAGACTTTACG-AAAATTGGTGG
126 AAGG-ATGAACTTTGATTTTAAGAAAAATAGG-GC
* ** * * * * * ***
2349638 GAAG-AAAGAC-TTTCTTGTGAAACTAAAGCATCAATGTCGTGTATCCTTATG-AGAAGACTACA
1 AAAGAAAAG-CTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTG
* * *** * * * ** * * * **
2349700 TTTATGGTGCATGATCCCAAAAAGAATGGGGAATAG-TATGGGTGTTCTTGTTTGTCTTATTTGT
64 TTTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTATGAGAATCCATGCTTGTCTTATTTAA
* ** * ** *
2349764 GAAACAAACTTTGATTCTATCAAAAAT-GGTGG
128 G-GATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * * * *
2349796 AAAGAAAAGCTTTTCTTGCGATACCATAGCATCAATGTCATGTATACTAATGAAGAGAATGCGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * * * * **
2349861 TTTGGAT-CCTAATCATAAAAAGGATGGAGATTATT-TCTAGAATTGATGCTTGTCTTATTTAGA
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTAT-GAGAATCCATGCTTGTCTTATTTA-A
*
2349924 GGATGAACTTTGATTTTAAGGAAAATAGGGC
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
* * * ** * * * * *
2349955 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAACATTTATCCTAAAGAGGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * **** * * * * * *
2350020 TATAGTTCCTAATGGCAAAATAAAATGAAGATCAT-TTCTG-GAATCCATGTTTGCCTCATTTAA
66 TATGGTGCCTAATCTTGAAA-AGAATGGAGAT--TGTTATGAGAATCCATGCTTGTCTTATTTAA
* * * *
2350083 GGCACGAACTTAGACTTTTCA-AAAATTAGTGG-
128 GG-ATGAACTTTGA-TTTTAAGAAAAATAG-GGC
* * * * * * * *
2350115 GAAG-AAAGCTTTTGTTCCGAAACCAAAGCACCAATATCGTGTATCCTAATG-AGAAGACTATGT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGT
* * * * * ** * * * *
2350178 TTAAGGTGCCTAATCTTGAAAAGTAGGGGGAATAG-TACAAGTATTCATGTTTGCCTTATTTAAG
65 TTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTATGAGAATCCATGCTTGTCTTATTTAAG
** * * * *
2350242 AGACAAACTTCGATTCTATA-AAAAA-CGGTGA
129 -GATGAACTTTGATTTTA-AGAAAAATAGG-GC
* * *
2350273 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * ** *
2350338 TTTGGAT-CCCAATCTTGAAAAGAATGGAGATGGGCACT-AGAATCGATGCTTGTCTTATTTAAG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTTAA-
* *
2350401 GGATAAACTTTGATTTTAAGGAAAATAGGGC
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
* * ** * * * ** * *
2350432 AAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCGATATCAT-CATTGTTAATGAGGAGATTGTG
1 AAAGAAAAGCTTTTC-TTGCAAAACCAAAGCATCAATATCATGTA-TCCTAATGAAGAGAATGTG
* * ** *** *** * * ** *
2350495 TTTATAGTACCTAATC-ACAAAATGAAACAAGATCAATACT-AGAATCCACGTTTGTCTCGTTTG
64 TTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTTA
* * * * * *
2350558 GGGCACGAACTTAGACTTTTCA-AAAATTTGTAGG-
127 AGG-ATGAACTTTGA-TTTTAAGAAAAATAG--GGC
* ** * * ***
2350592 -AAG-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATG-AGAGGACTACAT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGT
* * * * * * * * *
2350654 TTATGGTGCCTAATCCTGAAAGGAATGGGGAATAG-TAAGAGTATTCATGTTTATCTTATTTAAG
65 TTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTATGAGAATCCATGCTTGTCTTATTTAAG
* ** *
2350718 AGATGAACTTTGATTCTATCAAAAAT-GGTGG
129 -GATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * * * * *
2350749 AAAGAAAAGCTTTTCTCGCAACACCAAGGCATTAATGTCATGTATCCTAATGAACAGAGTGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * ** *
2350814 TTTGGAT-CC-AATTCTTGAAAATG-ATGGAGATTGTTACGAGAATAGATGCTTGCCTTATTTGA
66 TATGG-TGCCTAA-TCTTGAAAA-GAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTT-A
* * *
2350876 AGGATGACCTTTGAATTTAAGGAAAATAGGGC
127 AGGATGAACTTTGATTTTAAGAAAAATAGGGC
* * ** * ** ** * * * *
2350908 AAAGAAAAGATTTCCACGCAATAGAAAATTATCAATATC-TTTAATCTTAATGAGGAGAATATGT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGT
* * ** * *** *** * * *
2350972 TTATAGTGCTTAAT-TACAAAATGAATGAAGATCAATACT-AGAATCCACATTTGCCTCATTTGA
65 TTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTTAA
* * * * * * * *
2351035 GGTACGAACCTAGACTCT-ATAAAAATTGGTAGG
128 GG-ATGAACTTTGATTTTAAGAAAAATAGG--GC
* * * ** * * *
2351068 AAA-AAAAGCCTTTCTTGCGAAACTAAAGCATCAATATTGTGTATCCTTATG-AGAAGACTATGT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGT
* * * * * * * *
2351131 TTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAG-AATGAGTATTCATGTTTGTCTTATTTTAG
65 TTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTATGAGAATCCATGCTTGTCTTATTTAAG
** * ** *
2351195 AGACAAACTTTGATTCTATCAAAAAT-GGTGG
129 -GATGAACTTTGATTTTAAGAAAAATAGG-GC
*** * * * *
2351226 AAAGAAAAGCTTTTCTTGCGGCACGAAAGCATCATTGTCATGTATCATAATGAAGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * * * * * * *
2351291 TTTGGAT-CCCAATCTTCAAAGGATTGGAGATAGTTACGAGAATCGATGCTTATCTTATTTAAGG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA-G
*
2351355 GATGAACTTTGATTTTAAGGAAAATAGGGC
129 GATGAACTTTGATTTTAAGAAAAATAGGGC
* * ** * * *
2351385 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* ** * **** * * * *
2351450 TATAGTGCCTAAT-TACAAAATGAATGAAGATCAAAACT-AGAATCCACGTTTAG-CTCATTTGA
66 TATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCCATGCTT-GTCTTATTTAA
* * * * *
2351512 GGCACGAA-TTTAGACTTT-ACAAAAATTGGTGG
128 GG-ATGAACTTT-GATTTTAAGAAAAATAGG-GC
* * * *** * * * ***
2351544 GAA-AAATGCCTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTACAT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGT
* ** * * *
2351607 TTAT-GTGCCTAATCTTGAAAAGAATGGGGATTAG-TATGACTATTCAGGTTTGTCTTATTTAAG
65 TTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCCATGCTTGTCTTATTTAAG
** * ** * *
2351670 AGACAAACTTTGATTCTATCAAAAACGATGG-
129 -GATGAACTTTGATTTTAAGAAAAA-TAGGGC
** * * * * * *
2351701 AAA-AAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* ** * * * * *
2351765 TTTGGAT-CCCGATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCTTTTTTCAGG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTT-AAG
*
2351829 GATGAACTTTGATTTTAA-AGAAAATATGGC
129 GATGAACTTTGATTTTAAGA-AAAATAGGGC
* * * * * * * * * *
2351859 AAA-AATAAGATTTCCATGCAAAA-AAAATCATCCACATCACT-AATCTTAATGAGGAGAATGTG
1 AAAGAA-AAGCTTTTCTTGCAAAACCAAAGCATCAATATCA-TGTATCCTAATGAAGAGAATGTG
** * ** * * *** ** * ** **
2351921 TTTATAATACCTAATC-ACAAAATGAATGAAAATCAATACAAGAATCTATTTTTGTCTTATTCGA
64 TTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA
* * * *
2351985 GGCTCAAACTTAG-TCTTTACA-AAAAAT-GGCGG
128 GGAT-GAACTTTGAT-TTTA-AGAAAAATAGG-GC
* * ** ** * * * *
2352017 GAA-AAAAGCATTTCTTGTGAAGTCAAAGCACCAATATCGTGTATCCTAATG-AGAAGACTATGT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGT
* * * ** * * *
2352080 TTAAGGTGCCTAATCTTGAAAAGAATGCGAAATAG-TATGACTATTCATGTTTGTCTTATTTATG
65 TTATGGTGCCTAATCTTGAAAAGAATG-GAGATTGTTATGAGAATCCATGCTTGTCTTATTTA-A
** * ** ** ** *
2352144 GGACAAACTTTAATCCTATTAAAAACGGGGG
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
** * * *
2352175 AAA-AAAAG-TATTT-TTGTGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGAGAATGTGT
1 AAAGAAAAGCT-TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGT
* * * * * * ** * * *
2352237 TTTTGGAT-CCCAATCTTGAAATGAATTGATATTATTACAAGAATCGATGCTTTTTTTATTTAAG
65 TTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA-
*
2352301 GGATGAACTTTGATTTTAAGGAAAATAGGGC
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
* * ** * * * *
2352332 AAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATATAAT-TAATCTTAATGAGGAGAATGTG
1 AAAGAAAAGCTTTTC-TTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTG
** * ** *** * * * * *
2352395 TTTATAATGCCTAATCAT-AAAATGAATAAAGATCAATACT-AGAATCCACGTTTGTCTCAATTG
64 TTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTTA
* * * * *
2352458 AGGCATGAACTTAGACTTT-ACAAAAATTGGTGG
127 AGG-ATGAACTTTGATTTTAAGAAAAATAGG-GC
* * ** * * * * ****
2352491 GAAG-AAAGCCTTTCTTGTGAAACCAAAGGATCAATATCATGTATCTTTATG-AGAAGACTACAA
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGT
** * * ** * * *
2352554 TTATGGTGCCTAATCCCGAAAACAATGGGGATTAG-TATGACTATTCATGTTTATCTTATTTAAG
65 TTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCCATGCTTGTCTTATTTAAG
** *
2352618 AGAAAAACTTTGATTCTATA-AAAAAT-GGTG-
129 -GATGAACTTTGATTTTA-AGAAAAATAGG-GC
* * * * * *
2352648 GAA-AAAAGCATTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAAGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * ** * *
2352712 TTTGGAT-CCTAATCTTGAAAAGAATTGAGATTGCTACAAGAATCTATGCTTATCTTATTTAAGG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA-G
* * *
2352776 GATGAACGTAGATTTTAAGGAAAATAGGGC
129 GATGAACTTTGATTTTAAGAAAAATAGGGC
* ** * * * * *
2352806 AAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCGT-TAAGCTTAATGAGGAGAATGTG
1 AAAGAAAAGCTTTT-CTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTG
* ** * ** * * * *
2352869 TTTATAGTGCCTAATC-ACAAAATGAATGAAGA-T-CAATGCTAGAATCCATGTTTGGCTCACTT
64 TTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTATG--AGAATCCATGCTTGTCTTATTT
* * * * *
2352931 GAGGCATGAACTTAGACTTTACG-AAAATTGGTG-
126 AAGG-ATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * *
2352964 AGAAG-AAAGAC-TTTCTTGCGAAACCAAAGCATTAATAT-AGTGTTTCCTTAA-G-AGATGACT
1 A-AAGAAAAG-CTTTTCTTGCAAAACCAAAGCATCAATATCA-TGTATCC-TAATGAAGA-GAAT
*** * * * * * * * *
2353024 ACATTTATGGTGCCTAATCTCGAAAAGAATGGGGAATAG-TAAGAGTATTCATGTTTCTCTTATT
61 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTATGAGAATCCATGCTTGTCTTATT
* * * * **
2353088 TGAGAGATAAACTTTGGTTCTATCAAAAAT-GGTG-
125 TAAG-GATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * ** ** * * *
2353122 AAA-AAAAGCATTTCCTGCGACGCCAAAGTGTCAATGTCATGTATCCTAAGGAAGAAAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * * *
2353186 TTTGGAT-CCTAATCTTGAAAAGAATTGATATTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
66 TATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA-G
* * *
2353250 GATGAACTTAGATTTTAAGGAAAATAAGGC
129 GATGAACTTTGATTTTAAGAAAAATAGGGC
* * * *
2353280 AAAGAAAAG---AT-TT------------CATCAATATCAT-TAAGCTTAATGAGGAGAATGTGT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGT
* ** * * ** * * * * *
2353328 TTATAGTGCCTAATC-ACAAAATGAACGAAGATCATTACT-AGAATCTATGTTTCTCTCATTTGA
65 TTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTTAA
** * * * *
2353391 GGCACAAACATAGACTTTACA-AAAATTGCAGGG-
128 GG-ATGAACTTTGATTTTA-AGAAAAAT--AGGGC
* * * * * *
2353424 -AA-AAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCTTGTATCCTAATGAAAAGACTATGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * ** ** *
2353487 TAAGGTACCTAATCTTGAAAAGAATATGGA-ATAG-TATGACTATTTATGTTTGTCTTATTTAAG
66 TATGGTGCCTAATCTTGAAAAG-A-ATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAAG
** * ** *
2353550 AGACAAACTTTGATTCTATCAAAAA-AGGTGG
129 -GATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * * * * *
2353581 GAA-AAAAGCATTTCTTTCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGAGAATGTGTT
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
* * * * *
2353645 TTTGGAT--CTCAATCTTGAAAAGAATTGAGATTGTTACGAGAATCGATGCTTGTCTTAGTTAAG
66 TATGG-TGCCT-AATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA-
* *
2353708 GGATGAACTTTGATTTTAAGGAAAATATGGC
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
* * ** * * * *
2353739 AAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATATCAT-TAAGCTTAATGAGGAGAATGTG
1 AAAGAAAAGCTTTTC-TTGCAAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTG
* ** * *** * * * *
2353802 TTTATAGTGCCTAATC-ACAAAATGAATGAAGATCAATACT-AGAATCCATGTTTGGCTCATTTG
64 TTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCCATGCTTGTCTTATTTA
** * * * * *
2353865 AGGTATGGCCTTAGACTTT-ACAAAAATTGGCGG
127 AGG-ATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * * *
2353898 GAAG-AAAGCCTTTCTTGCGAAACCAAAGCGTCAATAT-AGTGTATCCT--T-AAGAGAAGAGTA
1 AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA-TGTATCCTAATGAAGAGAA-TGT-
* ** * * * * * *
2353958 CATTTATGGTGCCTAATCCCGAAAAGAATGGGGAATAG-TATGAGTATTCATGTTTCTCTTATTT
63 -GTTTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTATGAGAATCCATGCTTGTCTTATTT
* * ** *
2354022 AAGAGATAAAC-TTGATTCTATCAAAAAT-GGTGG
126 AAG-GATGAACTTTGATTTTAAGAAAAATAGG-GC
* * * ** ** *
2354055 GAA-AAAAGCATTTT-TTGCGACACCAAAGTGTCAATGCCATGTATCCTAATGAAGAGAATCTGT
1 AAAGAAAAGC-TTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGT
* * * * * *
2354118 TTTTGGAT-CCCAATCTTGAAAAGAATTGAGATTGTTACGAGAATCGATGTTTGTCTTATTTAAG
65 TTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAA-
* *
2354182 GGATGAACTTAGATTTTAAGGAAAATAGGGC
128 GGATGAACTTTGATTTTAAGAAAAATAGGGC
* * * * * *
2354213 AAAGAAAAG-ATTTCGATGCAATAA-AAAATCATCAATATCAT-TAAGCTTAATGAAGAGAATGT
1 AAAGAAAAGCTTTTC-TTGCAA-AACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGT
* *
2354275 GTTTATAGTGCCGAATC
63 GTTTATGGTGCCTAATC
2354292 ACAAAATGAA
Statistics
Matches: 3759, Mismatches: 1224, Indels: 610
0.67 0.22 0.11
Matches are distributed among these distances:
142 13 0.00
143 82 0.02
144 1 0.00
145 4 0.00
146 2 0.00
155 11 0.00
156 34 0.01
157 591 0.16
158 1300 0.35
159 1584 0.42
160 124 0.03
161 11 0.00
162 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTT
TATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCCATGCTTGTCTTATTTAAGGA
TGAACTTTGATTTTAAGAAAAATAGGGC
Found at i:2349933 original size:159 final size:158
Alignment explanation
Indices: 2347732--2354182 Score: 1432
Period size: 159 Copynumber: 40.9 Consensus size: 158
2347722 TAGACTTTAT
* * * * *
2347732 AAAAATTGGTGGGAAGAAAAGCTTTTCTTGTGAAACCAATGCATCAATATCATGTATCCTTAT-T
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* *** * * * * * * * * *
2347796 AGAAGACTACATTTATGG-TCCTTAATCCTGAAAGGAGTGGGGAGTAGTA-TGGATATTCATGTT
65 AG-AGAATGTGTTTATGGATCC-TAATCATAAAAAGAATGGAGATTAGTACTAGA-ATCCATGCT
* * *
2347859 TGTCTTATTTAACAGACAAACTTTTATTCTATC
127 TGCCTTATTTAA-GGACAAACTTTGATTCTATC
* * * *
2347892 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
** * * * * * * **
2347957 GAGGGTGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATT-GTTACGAGAATGGATGCTTGC
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTGC
* ** * * **
2348021 TTTATTTAAGGGATGAGCTTTGATTTTAAG
130 CTTATTTAA-GGACAAACTTTGATTCTATC
** * * * ** * * *
2348051 AAAAATAGG-GGAAAGAAAAAATTTCCATGCAAAAGAAAATCATCAATATC-TTTAATCTTAATG
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATG
* * * * * * * * * ** * * *
2348114 AGGAGAATTTATTTATAG-TGCCTAATCACAAAATGAATGAAGGTCAACAGC-AGAATTCACGTT
64 AAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTA-CTAGAATCCATGCT
* * * *
2348177 TGGCTCATTTAAGGTACGAACTTCGACTT-TA-C
127 TGCCTTATTTAAGG-ACAAACTTTGA-TTCTATC
* * * * * * * * *
2348209 AAAAATTAGCGGCAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAACATCGTGTATCTTAAAG-
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
** * * * * * * *
2348272 AGAAGGCTATGTTTAAGG-TGACTAATCTTGAAAAGAATGCG-GAATAGTA-T-GACTATTCATG
65 AG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATG-GAGATTAGTACTAGA--ATCCATG
* * * *
2348333 TTTGTCTTATTTATGGGGCAAA-TTTGATTCTATC
125 CTTGCCTTATTTA-AGGACAAACTTTGATTCTATC
* * * * * * ** * * * *
2348367 CAAAACGGTAGAAAGAAAAGCTTTTGTTACGACATGAAAGCATGAATGTCATATATCCTAAAGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * * * *
2348432 GAGAATGAGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGT
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTGC
** **
2348496 CTTATTTAAGGGATGAACTTTGATAT-TAAG
130 CTTATTTAA-GGACAAACTTTGAT-TCTATC
* * * * * * * ** * * * *
2348526 TAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAAC-TTTAATCTTAATG
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATG
* * ** * * * * * * * * *
2348589 ATGAGAATGTGTTTATAGCGCCTAATCACAATATGAATGAAGATCATTACTAAAATCCACGTTTG
64 AAGAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTTG
* * * * *
2348654 GCTCATTTGAGGTACGAACTTGGACTT-TA-C
129 CCTTATTTAAGG-ACAAACTTTGA-TTCTATC
* * * * * ** *
2348684 AAAAATTGGT-GAGAA-AAAATCTTTTCTCGTGAAGCCAAAGCACCAATATTGTGTATCCTAAAG
1 AAAAA-TGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * * * * * * *
2348747 -AGAAGACTATGTTTA-AGTTGCCTAATCTTGAAATGAATGGGGAATAGTA-TGAGTATTCTTGT
64 AAG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACT-AGAATCCATGC
*
2348809 TTGTCTTATTTAAGAGAC--AC----A---TATC
126 TTGCCTTATTTAAG-GACAAACTTTGATTCTATC
* ** * * * *
2348834 AAAAAGGGCAGAAAGAAAAGCTTTTCTTGCGACACGAAAGCATAAATGTCATGTATCCTAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * *
2348899 GAGAATGTGTTTTTGGATCCCAATCTTAAAAAGAATGTAGATT-GTTA-TGAGAATCGATAGC-T
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACT-AGAATCCAT-GCTT
* ** * * **
2348961 GTCTTATTTAAGGGATGAGCTTTGATTTTAAG
128 GCCTTATTTAA-GGACAAACTTTGATTCTATC
* * * * * * * ** * * *
2348993 AAAAATAGCGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-AAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * * * * *
2349057 GGAGAATGTGTTTATAG-TGCCTAATCACAAAATGTATGAAGATCATTACAAGAATCCATG-TTT
66 -GAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTTG
* * * *
2349120 CTCTCATTTAAGGCACAAACTTAGACT-TAAC
129 C-CTTATTTAAGG-ACAAACTTTGATTCTATC
* * * * * *
2349151 AAAAGTTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCA-CTAATATCGTGTATCCTTATG
1 AAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC-AATATCATGTATCCTAATG
* * *** * * * * *
2349214 -AGAAGACTACT-TTTATGG-TGCCTAATCCCGAAAAGAATGGGGATTAGTA-TGTGTATTCTTG
64 AAG-AGAAT-GTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACT-AGAATCCATG
* * * * * *
2349275 TTTGTCTTATTTATGAGAGAAACTTTGGTTTTATC
125 CTTGCCTTATTTAAG-GACAAACTTTGATTCTATC
** * * * *
2349310 AAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGGA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * **
2349375 GAGAATGTGTTT-TGGCTCCAAATCTTGAAAAGAATGGAGATT-GTTA-TGAGAATTGATGCTTG
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACT-AGAATCCATGCTTG
* ** * **
2349437 TCTTATTTAAAGGATGAGCTTTGATAT-TAAG
129 CCTTATTT-AAGGACAAACTTTGAT-TCTATC
* * * * * ** * * *
2349468 TAAAATAGG-GCAAAGAAAAGGTTTCCATGC-AAAAGAAATCATCAATAACAT-TAAT-CTTATG
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAAT-
* * * * ** *
2349529 GAGGAGAATGTGTTTAT--ACTGCCTAATCACATAATGAATCAAAGATTAATACTAGAATCCATG
63 GAAGAGAATGTGTTTATGGA-T-CCTAATCATAAAAAGAAT-GGAGATTAGTACTAGAATCCATG
* * * * * *
2349592 TTTGGCTCATTTGAGGCACGAACTTAGACTT-TA-C
125 CTTGCCTTATTTAAGG-ACAAACTTTGA-TTCTATC
* * * * * * *
2349626 GAAAATTGGTGGGAAG-AAAGAC-TTTCTTGTGAAACTAAAGCATCAATGTCGTGTATCCTTATG
1 -AAAAATGGTGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* *** * * ** * * * ** * * *
2349689 -AGAAGACTACATTTATGG-TGCATGATCCCAAAAAGAATGGGGAATAGTA-TGGGTGTTCTTGT
64 AAG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACT-AGAATCCATGC
* ** *
2349751 TTGTCTTATTTGTGAAACAAACTTTGATTCTATC
126 TTGCCTTATTTAAG-GACAAACTTTGATTCTATC
* * * *
2349785 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCATAGCATCAATGTCATGTATACTAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * ** *
2349850 GAGAATGCGTTTTTGGATCCTAATCATAAAAAGGATGGAGATTATTTCTAGAATTGATGCTTGTC
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTTGCC
** * **
2349915 TTATTTAGAGGATGAACTTTGATTTTAAG
131 TTATTTA-AGGACAAACTTTGATTCTATC
* * * * * * ** * * * *
2349944 GAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAACATTTATCCTAAAGA
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * *
2350008 GGAGAATGTGTTTATAGTTCCTAATGGCA-AAATAA-AATGAAGATCATTTCTGGAATCCATGTT
65 AGAGAATGTGTTTATGGATCCTAAT--CATAAA-AAGAATGGAGATTAGTACTAGAATCCATGCT
* * *
2350071 TGCCTCATTTAAGGCACGAACTTAGACTT-T-TC
127 TGCCTTATTTAAGG-ACAAACTTTGA-TTCTATC
* * * * * *
2350103 AAAAATTAGTGGGAAG-AAAGCTTTTGTTCCGAAACCAAAGCACCAATATCGTGTATCCTAATG-
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * * * * * *
2350166 AGAAGACTATGTTTAAGG-TGCCTAATCTTGAAAAGTAGGGGGAATAGTACAAGTATTCATGTTT
65 AG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTT
* *
2350230 GCCTTATTTAAGAGACAAACTTCGATTCTATA
128 GCCTTATTTAAG-GACAAACTTTGATTCTATC
* * *
2350262 AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * ** * * *
2350327 GGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATGGGCACTAGAATCGATGCTTGTC
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTTGCC
* * **
2350392 TTATTTAAGGGATAAACTTTGATTTTAAG
131 TTATTTAA-GGACAAACTTTGATTCTATC
* * * * * ** * * * **
2350421 GAAAATAGG-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCGATATCAT-CATTGTTAAT
1 AAAAAT-GGTGGAAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAATATCATGTA-TCCTAAT
* * * * * *** * * * *
2350483 GAGGAGATTGTGTTTATAG-TACCTAATCACAAAATGAAACAAGATCAATACTAGAATCCACGTT
63 GAAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCT
* ** ** * *
2350547 TGTCTCGTTTGGGGCACGAACTTAGACTT-T-TC
127 TGCCTTATTTAAGG-ACAAACTTTGA-TTCTATC
* * * *
2350579 AAAAATTTGTAGG-AAG-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATG
1 AAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* *** * * * * * ** * * *
2350642 -AGAGGACTACATTTATGG-TGCCTAATCCTGAAAGGAATGGGGAATAGTAAGAGTATTCATGTT
64 AAGA-GAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCT
** **
2350705 TATCTTATTTAAGAGATGAACTTTGATTCTATC
127 TGCCTTATTTAAG-GACAAACTTTGATTCTATC
* * * *
2350738 AAAAATGGTGGAAAGAAAAGCTTTTCTCGC-AACACCAAGGCATTAATGTCATGTATCCTAATGA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * **
2350802 ACAGAGTGTGTTTTTGGATCC-AATTCTTGAAAATG-ATGGAGATT-GTTACGAGAATAGATGCT
65 AGAGAATGTGTTTATGGATCCTAA-TCAT-AAAAAGAATGGAGATTAG-TACTAGAATCCATGCT
** * **
2350864 TGCCTTATTTGAAGGATGACCTTTGAATT-TAAG
127 TGCCTTATTT-AAGGACAAACTTTG-ATTCTATC
* * * * ** ** ** * *
2350897 GAAAATAGG-GCAAAGAAAAGATTTCCACGC-AATAGAAAATTATCAATATC-TTTAATCTTAAT
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGT-ATCCTAAT
* * * * * * * * * * ***
2350959 GAGGAGAATATGTTTATAG-TGCTTAATTACAAAATGAATGAAGATCAATACTAGAATCCACATT
63 GAAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCT
* * * * * *
2351023 TGCCTCATTTGAGGTACGAACCTAGACTCTAT-
127 TGCCTTATTTAAGG-ACAAACTTTGATTCTATC
* * ** *
2351055 AAAAATTGGTAGGAAA-AAAAGCCTTTCTTGCGAAACTAAAGCATCAATATTGTGTATCCTTATG
1 AAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * * * * *
2351119 -AGAAGACTATGTTTAAGG-TGCCTAATCTTGAAAAGAATGGGGAATAG-AATGAGTATTCATGT
64 AAG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACT-AGAATCCATGC
* *
2351181 TTGTCTTATTTTAGAGACAAACTTTGATTCTATC
126 TTGCCTTATTTAAG-GACAAACTTTGATTCTATC
** * * * *
2351215 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGGCACGAAAGCATCATTGTCATGTATCATAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * * * * **
2351280 GAGAATGTGTTTTTGGATCCCAATCTTCAAAGGATTGGAGA-TAGTTACGAGAATCGATGCTTAT
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTGC
** * **
2351344 CTTATTTAAGGGATGAACTTTGATTTTAAG
130 CTTATTTAA-GGACAAACTTTGATTCTATC
* * * * * ** * *
2351374 GAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * ** * *
2351438 GGAGAATGTGTTTATAG-TGCCTAATTACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTA
65 AGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTT-
* * *
2351502 G-CTCATTTGAGGCACGAA-TTTAGACTT-TA-C
128 GCCTTATTTAAGG-ACAAACTTT-GA-TTCTATC
* * * ** * *
2351532 AAAAATTGGTGGGAA-AAATGCCTTTCTTATGAAACCAAAGCATCAATATCGTGTATCCTTATG-
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* *** * * * * * *
2351595 AGAAGACTACATTTAT-G-TGCCTAATCTTGAAAAGAATGGGGATTAGTA-T-GACTATTCAGGT
65 AG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGA--ATCCATGC
*
2351656 TTGTCTTATTTAAGAGACAAACTTTGATTCTATC
126 TTGCCTTATTTAAG-GACAAACTTTGATTCTATC
* * * * * * * *
2351690 AAAAACGATGGAAA-AAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATGTATCCTATTAAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * ** * * * * **
2351754 GGGAATGTGTTTTTGGATCCCGATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTAT
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTGC
* * ** * *
2351818 CTTTTTTCAGGGATGAACTTTGATTTTA-A
130 CTTATTT-AAGGACAAACTTTGATTCTATC
* * * * ** * * * * *
2351847 AGAAAAT-ATGGCAAA-AATAAGATTTCCATGC-AAAAAAAATCATCCACATCACT-AATCTTAA
1 A-AAAATGGTGG-AAAGAA-AAGCTTTTCTTGCGAAACCAAAGCATCAATATCA-TGTATCCTAA
* * * * * * * * * * **
2351908 TGAGGAGAATGTGTTTAT-AATACCTAATCACAAAATGAATGAAAATCAATACAAGAATCTATTT
62 TGAAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGC
* ** * * *
2351972 TTGTCTTATTCGAGGCTCAAAC-TT-AGTCTTTAC
126 TTGCCTTATTTAAGG-ACAAACTTTGATTCTAT-C
* * * * ** * *
2352005 AAAAAATGGCGGGAA-AAAAGCATTTCTTGTGAAGTCAAAGCACCAATATCGTGTATCCTAATG-
1 -AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * *
2352068 AGAAGACTATGTTTAAGG-TGCCTAATCTTGAAAAGAATGCGA-AATAGTA-T-GACTATTCATG
65 AG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATG-GAGATTAGTACTAGA--ATCCATG
* * * * * *
2352129 TTTGTCTTATTTATGGGACAAACTTTAATCCTATT
125 CTTGCCTTATTTA-AGGACAAACTTTGATTCTATC
* * * * * *
2352164 AAAAACGGGGGAAA-AAAAG-TATTT-TTGTGACACCAAAGCATCAATGTCTTGTATCCTAATGA
1 AAAAATGGTGGAAAGAAAAGCT-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * * * **
2352226 AGAGAATGTGTTTTTGGATCCCAATCTTGAAATGAATTGATATTATTACAAGAATCGATGCTTTT
65 AGAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTTGC
* ** * **
2352291 TTTATTTAAGGGATGAACTTTGATTTTAAG
130 CTTATTTAA-GGACAAACTTTGATTCTATC
* * * * * ** * * *
2352321 GAAAATAGG-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATATAAT-TAATCTTAAT
1 AAAAAT-GGTGGAAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAATATCATGT-ATCCTAAT
* * * ** * * * *
2352383 GAGGAGAATGTGTTTAT-AATGCCTAATCATAAAATGAATAAAGATCAATACTAGAATCCACGTT
63 GAAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCT
* * * * *
2352447 TGTCTCAATTGAGG-CATGAACTTAGACTT-TA-C
127 TGCCTTATTTAAGGACA--AACTTTGA-TTCTATC
* * * * * *
2352479 AAAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAAACCAAAGGATCAATATCATGTATCTTTATG-
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* **** *** * * * *
2352542 AGAAGACTACAATTATGG-TGCCTAATCCCGAAAACAATGGGGATTAGTA-T-GACTATTCATGT
65 AG-AGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGA--ATCCATGC
** * *
2352604 TTATCTTATTTAAGAGAAAAACTTTGATTCTATA
126 TTGCCTTATTTAAG-GACAAACTTTGATTCTATC
* * * *
2352638 AAAAATGGTGG-AA-AAAAGCATTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * * **
2352701 GAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATTGAGATT-GCTACAAGAATCTATGCTTAT
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTGC
** * * * **
2352765 CTTATTTAAGGGATGAACGTAGATTTTAAG
130 CTTATTTAA-GGACAAACTTTGATTCTATC
* * * * ** * * * *
2352795 GAAAATAGG-GCAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCGT-TAAGCTTAAT
1 AAAAAT-GGTGGAAAGAAAAGCTTTT-CTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAAT
* * * * * * * * *
2352857 GAGGAGAATGTGTTTATAG-TGCCTAATCACAAAATGAATGAAGATCAATGCTAGAATCCATGTT
63 GAAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCT
* * * * *
2352921 TGGCTCACTTGAGG-CATGAACTTAGACTT-TA-C
127 TGCCTTATTTAAGGACA--AACTTTGA-TTCTATC
* * *
2352953 GAAAATTGGT-GAGAAG-AAAGAC-TTTCTTGCGAAACCAAAGCATTAATAT-AGTGTTTCCTTA
1 -AAAAATGGTGGA-AAGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCA-TGTATCC-TA
* *** * * * ** * *
2353014 A-G-AGATGACTACATTTATGG-TGCCTAATC-TCGAAAAGAATGGGGAATAGTAAGAGTATTCA
61 ATGAAGA-GAATGTGTTTATGGAT-CCTAATCAT-AAAAAGAATGGAGATTAGTACTAGAATCCA
* * * *
2353075 TG-TTTCTCTTATTTGAGAGATAAACTTTGGTTCTATC
123 TGCTTGC-CTTATTTAAG-GACAAACTTTGATTCTATC
* * ** ** * *
2353112 AAAAATGGT-GAAA-AAAAGCATTTCCTGCGACGCCAAAGTGTCAATGTCATGTATCCTAAGGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * * * * *
2353175 GAAAATGTGTTTTTGGATCCTAATCTTGAAAAGAATTGATATT-GTTACGAGAATCGATGCTTGT
66 GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTGC
** * * **
2353239 CTTATTTAAGGGATGAACTTAGATTTTAAG
130 CTTATTTAA-GGACAAACTTTGATTCTATC
* * * * * *
2353269 GAAAATAAG-GCAAAGAAAAG---AT-TT------------CATCAATATCAT-TAAGCTTAATG
1 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATG
* * * * * * * * *
2353316 AGGAGAATGTGTTTATAG-TGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCTATG-TT
64 AAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTT
* * * * *
2353379 TCTCTCATTTGAGGCACAAACATAGACTT-TA-C
128 GC-CTTATTTAAGG-ACAAACTTTGA-TTCTATC
** * * *
2353411 AAAAATTGCAGGGAA-AAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCTTGTATCCTAATGA
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * **
2353475 AAAGACTATGTTTAAGG-TACCTAATCTTGAAAAGAATATGGA-A-TAGTA-T-GACTATTTATG
65 AGAGAATGTGTTTATGGAT-CCTAATCATAAAAAG-A-ATGGAGATTAGTACTAGA--ATCCATG
* *
2353535 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
125 CTTGCCTTATTTAAG-GACAAACTTTGATTCTATC
* * * * * * *
2353570 AAAAAAGGTGGGAA-AAAAGCATTTCTTTCGACACCAAAGCATCAATGTCACGTATCCTAATGAA
1 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
* * * * * *
2353634 GAGAATGTGTTTTTGGAT-CTCAATCTTGAAAAGAATTGAGATT-GTTACGAGAATCGATGCTTG
66 GAGAATGTGTTTATGGATCCT-AATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTG
* * ** * **
2353697 TCTTAGTTAAGGGATGAACTTTGATTTTAAG
129 CCTTATTTAA-GGACAAACTTTGATTCTATC
* * * * * ** * * *
2353728 GAAAAT-ATGGCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAATATCAT-TAAGCTTAAT
1 AAAAATGGTGG-AAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAATATCATGT-ATCCTAAT
* * * * * * * *
2353790 GAGGAGAATGTGTTTATAG-TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTT
63 GAAGAGAATGTGTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCT
* * * **** *
2353854 TGGCTCATTTGAGGTATGGCCTTAGACTT-TA-C
127 TGCCTTATTTAAGG-ACAAACTTTGA-TTCTATC
* * * *
2353886 AAAAATTGGCGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCGTCAATAT-AGTGTATCCT--T-
1 AAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCA-TGTATCCTAATG
* * *** * * * *
2353946 AAGAGAAGAGTACATTTATGG-TGCCTAATCCCGAAAAGAATGGGGAATAGTA-TGAGTATTCAT
64 AAGAGAA-TGT--GTTTATGGAT-CCTAATCATAAAAAGAATGGAGATTAGTACT-AGAATCCAT
* *
2354009 G-TTTCTCTTATTTAAGAGATAAAC-TTGATTCTATC
124 GCTTGC-CTTATTTAAG-GACAAACTTTGATTCTATC
* * ** **
2354044 AAAAATGGTGGGAA-AAAAGCATTTT-TTGCGACACCAAAGTGTCAATGCCATGTATCCTAATGA
1 AAAAATGGTGGAAAGAAAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * *
2354107 AGAGAATCTGTTTTTGGATCCCAATCTTGAAAAGAATTGAGATT-GTTACGAGAATCGATGTTTG
65 AGAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAG-TACTAGAATCCATGCTTG
*
2354171 TCTTATTTAAGG
129 CCTTATTTAAGG
2354183 GATGAACTTA
Statistics
Matches: 4441, Mismatches: 1476, Indels: 752
0.67 0.22 0.11
Matches are distributed among these distances:
142 15 0.00
143 78 0.02
144 2 0.00
145 1 0.00
146 2 0.00
149 7 0.00
150 95 0.02
151 6 0.00
152 2 0.00
155 9 0.00
156 45 0.01
157 605 0.14
158 1528 0.34
159 1872 0.42
160 168 0.04
161 6 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA
GAGAATGTGTTTATGGATCCTAATCATAAAAAGAATGGAGATTAGTACTAGAATCCATGCTTGCC
TTATTTAAGGACAAACTTTGATTCTATC
Found at i:2355141 original size:159 final size:160
Alignment explanation
Indices: 2354506--2355143 Score: 475
Period size: 159 Copynumber: 4.0 Consensus size: 160
2354496 TGGTAAAAAA
* ** *
2354506 AAAAGCATTTCTTGCGACACCAAAGTGTCAATGACATGTATCCTAATGA-AGAGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGA-AGAATGTGTTTTT
* *
2354570 GGAT-CCCAATCTTGAAAAGAATTGCAA-AT-ATTATGAGAATCAATGCTTATCTTATTTAAGGG
65 AGATGCCCAATCTTGAAAAGAA-TG-AAGATAATTACGAGAATCAATGCTTATCTTATTTAAGGG
*
2354632 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
128 ATAAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * ** * * * *
2354665 AAAAGGTTTCCATGCAATAGAAAATCATCAATAG-CAT-TAAGCTTAATGAGAAGAATGTGTTTA
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAAT-GTCATGT-ATCCTAATGAGAAGAATGTGTTTT
* * * * * * * * * * *
2354728 TAG-TGCCTAATCAT-AAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATATGAGGC
64 TAGATGCCCAATCTTGAAAA-GAATGAAGATAATTACGAGAATCAATGCTTATCTTATTTAAGGG
* * * **
2354791 ATAAACTTAGACTTTACA--AAAATTGGTGGGAA-
128 ATAAACTTTGATTTTA-AGGAAAATAGG-GCAAAG
* * * * * * *
2354823 AAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATG-TTTAA
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATGTGTTTTTA
* * * * * * * *
2354887 GATGCCTAATCTTGAAAAGAATGTGAA-AT-AGTATGAGTATTAATGTTTGA-CTTATTTCAGAG
66 GATGCCCAATCTTGAAAAGAA--TGAAGATAATTACGAGAATCAATGCTT-ATCTTATTTAAGGG
* * *** * * *
2354949 ACAAACTTTGATTCTATCAAAAACAGTGAAAAG
128 ATAAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
2354982 AAAAGCTTTTCTGGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGAGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGA-AGAATGTGTTTTT
* *
2355046 GGAT-CCCAATCTTGAAAAGAAT-AGAGGTAATTACGAGAATCAATGCTTATCTTATTTAAGGGA
65 AGATGCCCAATCTTGAAAAGAATGA-AGATAATTACGAGAATCAATGCTTATCTTATTTAAGGGA
* *
2355109 TGAACTTTGATTTTAAGGAAAGTAGGGCAAAG
129 TAAACTTTGATTTTAAGGAAAATAGGGCAAAG
2355141 AAA
1 AAA
2355144 GATTTCCAAG
Statistics
Matches: 354, Mismatches: 100, Indels: 50
0.70 0.20 0.10
Matches are distributed among these distances:
156 1 0.00
157 8 0.02
158 109 0.31
159 223 0.63
160 13 0.04
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (160 bp):
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATGTGTTTTTA
GATGCCCAATCTTGAAAAGAATGAAGATAATTACGAGAATCAATGCTTATCTTATTTAAGGGATA
AACTTTGATTTTAAGGAAAATAGGGCAAAG
Found at i:2360097 original size:12 final size:11
Alignment explanation
Indices: 2360075--2360150 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2360065 AGAGAAAGAA
*
2360075 GAGAGAGGAGG
1 GAGATAGGAGG
2360086 GATGATAGGAGG
1 GA-GATAGGAGG
*
2360098 AGAGACAGGA--
1 -GAGATAGGAGG
*
2360108 GAGATAGTA--
1 GAGATAGGAGG
2360117 GAGATAGGAGG
1 GAGATAGGAGG
2360128 GATGATAGGAGG
1 GA-GATAGGAGG
*
2360140 AGAGACAGGAG
1 -GAGATAGGAG
2360151 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2360107 original size:24 final size:24
Alignment explanation
Indices: 2360074--2360159 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2360064 AAGAGAAAGA
*
2360074 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2360098 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2360116 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2360140 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2360160 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2360126 original size:42 final size:42
Alignment explanation
Indices: 2360065--2360183 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2360055 TAGCCCTCAA
* *
2360065 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2360107 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2360149 AGAGATAATAGAGAGAGGAGGGATGAAAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2360184 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2360167 original size:18 final size:18
Alignment explanation
Indices: 2360140--2360189 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
2360130 TGATAGGAGG
*
2360140 AGAGACAGGAGAGAT-AA
1 AGAGAGAGGAGAGATGAA
*
2360157 TAGAGAGAGGAGGGATGAA
1 -AGAGAGAGGAGAGATGAA
2360176 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
2360190 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.46, C:0.02, G:0.46, T:0.06
Consensus pattern (18 bp):
AGAGAGAGGAGAGATGAA
Found at i:2370119 original size:42 final size:42
Alignment explanation
Indices: 2370064--2370182 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2370054 TTCTTCTCTC
* * *
2370064 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCTTCCTCTCTCTACTATCTCTCCTGTCT
*
2370106 CTCCTCCTATCATCCTTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCTTCCTCTCTCTACTATCTCTCCTGTCT
* *
2370148 CTCCTCCTATCATCCTTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCTTCCTCTCTCTACTATCTCT
2370183 TTGAGGGCCA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCTTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2370125 original size:24 final size:24
Alignment explanation
Indices: 2370098--2370173 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 24
2370088 CTATTATCTC
2370098 TCCTGTCTCTCCTCCTATCATCCT
1 TCCTGTCTCTCCTCCTATCATCCT
* *
2370122 TCC--TATCT-CTACTATC-T-C-
1 TCCTGTCTCTCCTCCTATCATCCT
2370140 TCCTGTCTCTCCTCCTATCATCCT
1 TCCTGTCTCTCCTCCTATCATCCT
*
2370164 TCCTCTCTCT
1 TCCTGTCTCT
2370174 TCTTTCTCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
18 3 0.07
19 1 0.02
20 5 0.12
21 14 0.34
22 5 0.12
23 1 0.02
24 12 0.29
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (24 bp):
TCCTGTCTCTCCTCCTATCATCCT
Found at i:2370148 original size:18 final size:18
Alignment explanation
Indices: 2370079--2370149 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2370069 CCTGTCATCC
* *
2370079 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2370097 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2370119 CCTTCCTATCTCTACTATCT
1 -C-TCCTGTCTCTACTATCT
2370139 CTCCTGTCTCT
1 CTCCTGTCTCT
2370150 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 14 0.34
19 1 0.02
20 4 0.10
21 13 0.32
22 4 0.10
23 1 0.02
24 4 0.10
ACGTcount: A:0.10, C:0.42, G:0.03, T:0.45
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2372764 original size:18 final size:18
Alignment explanation
Indices: 2372721--2372849 Score: 57
Period size: 18 Copynumber: 6.5 Consensus size: 18
2372711 TCCATCTTCT
*
2372721 TCTCTCCTCT-TCCTATCA
1 TCTCTCCTCTCT-CTATTA
2372739 TC-CATCCTCTCTCTATTA
1 TCTC-TCCTCTCTCTATTA
2372757 TCTCTCCTATCTCTCCT-TCTA
1 TCTCTCC--TCTCT-CTAT-TA
*
2372778 TCATCCCTCCTATCTCTATTA
1 TC-T--CTCCTCTCTCTATTA
*
2372799 TCTCTTCTATCTCTCCTTCTATCA
1 TCTC-TC---CTCT-C-TCTATTA
* *
2372823 TCCCTCCTATCTCTATTA
1 TCTCTCCTCTCTCTATTA
2372841 TCTCTCCTC
1 TCTCTCCTC
2372850 CTATCTCTTC
Statistics
Matches: 85, Mismatches: 9, Indels: 34
0.66 0.07 0.27
Matches are distributed among these distances:
17 1 0.01
18 32 0.38
19 5 0.06
20 10 0.12
21 12 0.14
22 9 0.11
23 3 0.04
24 13 0.15
ACGTcount: A:0.13, C:0.41, G:0.00, T:0.46
Consensus pattern (18 bp):
TCTCTCCTCTCTCTATTA
Found at i:2372767 original size:9 final size:9
Alignment explanation
Indices: 2372755--2372848 Score: 65
Period size: 9 Copynumber: 11.1 Consensus size: 9
2372745 CTCTCTCTAT
2372755 TATCTCTCC
1 TATCTCTCC
2372764 TATCTCTCC
1 TATCTCTCC
*
2372773 T-TCTAT-C
1 TATCTCTCC
*
2372780 -ATCCCTCC
1 TATCTCTCC
**
2372788 TATCTCTAT
1 TATCTCTCC
*
2372797 TATCTCTTC
1 TATCTCTCC
2372806 TATCTCTCC
1 TATCTCTCC
*
2372815 T-TCTAT-C
1 TATCTCTCC
*
2372822 -ATCCCTCC
1 TATCTCTCC
**
2372830 TATCTCTAT
1 TATCTCTCC
2372839 TATCTCTCC
1 TATCTCTCC
2372848 T
1 T
2372849 CCTATCTCTT
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
7 8 0.13
8 10 0.16
9 44 0.71
ACGTcount: A:0.14, C:0.39, G:0.00, T:0.47
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2372778 original size:12 final size:12
Alignment explanation
Indices: 2372763--2372857 Score: 50
Period size: 12 Copynumber: 8.7 Consensus size: 12
2372753 ATTATCTCTC
2372763 CTATCTCTCCTT
1 CTATCTCTCCTT
*
2372775 CTATCATC-CCTC
1 CTATC-TCTCCTT
*
2372787 CTATCTCT--AT
1 CTATCTCTCCTT
2372797 -TA--TCT-CTT
1 CTATCTCTCCTT
2372805 CTATCTCTCCTT
1 CTATCTCTCCTT
*
2372817 CTATCATC-CCTC
1 CTATC-TCTCCTT
*
2372829 CTATCTCT--AT
1 CTATCTCTCCTT
*
2372839 -TATCTCTCCTC
1 CTATCTCTCCTT
2372850 CTATCTCT
1 CTATCTCT
2372858 TCTTTCTCTT
Statistics
Matches: 62, Mismatches: 9, Indels: 24
0.65 0.09 0.25
Matches are distributed among these distances:
7 3 0.05
8 1 0.02
9 11 0.18
11 7 0.11
12 36 0.58
13 4 0.06
ACGTcount: A:0.14, C:0.40, G:0.00, T:0.46
Consensus pattern (12 bp):
CTATCTCTCCTT
Found at i:2372787 original size:24 final size:24
Alignment explanation
Indices: 2372750--2372836 Score: 96
Period size: 24 Copynumber: 3.9 Consensus size: 24
2372740 CCATCCTCTC
* *
2372750 TCTATTATCTCTCCTATCTCTCCT
1 TCTATCATCCCTCCTATCTCTCCT
*
2372774 TCTATCATCCCTCCTATCTCT--A
1 TCTATCATCCCTCCTATCTCTCCT
*
2372796 T-TATC-T--CTTCTATCTCTCCT
1 TCTATCATCCCTCCTATCTCTCCT
2372816 TCTATCATCCCTCCTATCTCT
1 TCTATCATCCCTCCTATCTCT
2372837 ATTATCTCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
18 10 0.20
20 2 0.04
21 8 0.16
22 2 0.04
24 29 0.57
ACGTcount: A:0.14, C:0.39, G:0.00, T:0.47
Consensus pattern (24 bp):
TCTATCATCCCTCCTATCTCTCCT
Found at i:2372860 original size:42 final size:42
Alignment explanation
Indices: 2372733--2372848 Score: 205
Period size: 42 Copynumber: 2.8 Consensus size: 42
2372723 TCTCCTCTTC
* *
2372733 CTATCATCCATCCTCTCTCTATTATCTCTCCTATCTCTCCTT
1 CTATCATCCCTCCTATCTCTATTATCTCTCCTATCTCTCCTT
*
2372775 CTATCATCCCTCCTATCTCTATTATCTCTTCTATCTCTCCTT
1 CTATCATCCCTCCTATCTCTATTATCTCTCCTATCTCTCCTT
2372817 CTATCATCCCTCCTATCTCTATTATCTCTCCT
1 CTATCATCCCTCCTATCTCTATTATCTCTCCT
2372849 CCTATCTCTT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.15, C:0.40, G:0.00, T:0.46
Consensus pattern (42 bp):
CTATCATCCCTCCTATCTCTATTATCTCTCCTATCTCTCCTT
Found at i:2372866 original size:21 final size:21
Alignment explanation
Indices: 2372743--2372857 Score: 82
Period size: 21 Copynumber: 5.5 Consensus size: 21
2372733 CTATCATCCA
*
2372743 TCCTCTCTCTATTATCTCTCC
1 TCCTATCTCTATTATCTCTCC
* *
2372764 T-ATCTCTCCT-TCTATCATC-CC
1 TCCTATCT-CTAT-TATC-TCTCC
2372785 TCCTATCTCTATTATCTCT--
1 TCCTATCTCTATTATCTCTCC
*
2372804 T-CTATCTCTCCTTCTATCATC-CC
1 TCCTATCTCT--AT-TATC-TCTCC
2372827 TCCTATCTCTATTATCTCTCC
1 TCCTATCTCTATTATCTCTCC
2372848 TCCTATCTCT
1 TCCTATCTCT
2372858 TCTTTCTCTT
Statistics
Matches: 75, Mismatches: 5, Indels: 28
0.69 0.05 0.26
Matches are distributed among these distances:
18 8 0.11
19 1 0.01
20 11 0.15
21 36 0.48
22 10 0.13
23 1 0.01
24 8 0.11
ACGTcount: A:0.13, C:0.40, G:0.00, T:0.47
Consensus pattern (21 bp):
TCCTATCTCTATTATCTCTCC
Found at i:2377336 original size:24 final size:24
Alignment explanation
Indices: 2377308--2377378 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
2377298 GAGATAGTAA
2377308 AGATAGAAGGGATAATAGAAGGAG
1 AGATAGAAGGGATAATAGAAGGAG
* *
2377332 AGATAGGAGAGATAAT------AG
1 AGATAGAAGGGATAATAGAAGGAG
*
2377350 AGATAGAAGGGATGATAGAAGGAG
1 AGATAGAAGGGATAATAGAAGGAG
2377374 AGATA
1 AGATA
2377379 ATAGAGAGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 12
0.68 0.09 0.23
Matches are distributed among these distances:
18 15 0.42
24 21 0.58
ACGTcount: A:0.49, C:0.00, G:0.37, T:0.14
Consensus pattern (24 bp):
AGATAGAAGGGATAATAGAAGGAG
Found at i:2377353 original size:18 final size:18
Alignment explanation
Indices: 2377330--2377391 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
2377320 TAATAGAAGG
2377330 AGAGATAGGAGAGATAAT
1 AGAGATAGGAGAGATAAT
* * *
2377348 AGAGATAGAAGGGATGAT
1 AGAGATAGGAGAGATAAT
2377366 --AGA-AGGAGAGATAAT
1 AGAGATAGGAGAGATAAT
*
2377381 AGAGAGAGGAG
1 AGAGATAGGAG
2377392 GGATGATAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 9 0.26
16 3 0.09
17 3 0.09
18 20 0.57
ACGTcount: A:0.48, C:0.00, G:0.39, T:0.13
Consensus pattern (18 bp):
AGAGATAGGAGAGATAAT
Found at i:2377373 original size:33 final size:33
Alignment explanation
Indices: 2377336--2377406 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
2377326 AAGGAGAGAT
*
2377336 AGGAGAGATAATAGAGATAGAAGGGATGATAGA
1 AGGAGAGATAATAGAGAGAGAAGGGATGATAGA
* *
2377369 AGGAGAGATAATAGAGAGAGGAGGGATGATAGG
1 AGGAGAGATAATAGAGAGAGAAGGGATGATAGA
2377402 AGGAG
1 AGGAG
2377407 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.45, C:0.00, G:0.42, T:0.13
Consensus pattern (33 bp):
AGGAGAGATAATAGAGAGAGAAGGGATGATAGA
Found at i:2377385 original size:42 final size:42
Alignment explanation
Indices: 2377264--2377378 Score: 169
Period size: 42 Copynumber: 2.7 Consensus size: 42
2377254 AAGGGAAAGA
* * *
2377264 AGAGATAGGAGGGATGATATG-AGGATAGATAGGAGAGATAGT
1 AGAGATAGAAGGGATGATA-GAAGGAGAGATAGGAGAGATAAT
* *
2377306 AAAGATAGAAGGGATAATAGAAGGAGAGATAGGAGAGATAAT
1 AGAGATAGAAGGGATGATAGAAGGAGAGATAGGAGAGATAAT
2377348 AGAGATAGAAGGGATGATAGAAGGAGAGATA
1 AGAGATAGAAGGGATGATAGAAGGAGAGATA
2377379 ATAGAGAGAG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 1 0.02
42 64 0.98
ACGTcount: A:0.47, C:0.00, G:0.37, T:0.16
Consensus pattern (42 bp):
AGAGATAGAAGGGATGATAGAAGGAGAGATAGGAGAGATAAT
Found at i:2377400 original size:18 final size:18
Alignment explanation
Indices: 2377330--2377412 Score: 66
Period size: 18 Copynumber: 4.8 Consensus size: 18
2377320 TAATAGAAGG
*
2377330 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* * * *
2377348 AGAGATAGAAGGGATGAT
1 AGAGAGAGGAGAGATAAT
2377366 --AGA-AGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
2377381 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
2377399 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
2377413 AGAAGATGGA
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
15 9 0.17
16 3 0.06
17 5 0.10
18 35 0.67
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:2379501 original size:17 final size:17
Alignment explanation
Indices: 2379475--2379511 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
2379465 GATGAATGGA
2379475 AAACAACCTTCAAGACT
1 AAACAACCTTCAAGACT
*
2379492 AAACAGCCTTCAAGACT
1 AAACAACCTTCAAGACT
2379509 AAA
1 AAA
2379512 TATGGGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.27, G:0.08, T:0.16
Consensus pattern (17 bp):
AAACAACCTTCAAGACT
Found at i:2383420 original size:474 final size:475
Alignment explanation
Indices: 2382402--2389231 Score: 8350
Period size: 476 Copynumber: 14.6 Consensus size: 475
2382392 GAATGCTACA
* * *
2382402 TTTATGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGAGTTTTCATGTTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2382467 AGACAAACTTTGATTCTATCAAAAGTGGTAGAAAAAAAAGCTTTTCGTGCGACACGAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
2382532 ATGTCATGTATCCTAATGAAGAAAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGT
130 ATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* *
2382597 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
2382662 AAAGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAA-AAAGAGGAATGTGTTTATA
260 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATA
* * * * * * *
2382726 GTGCCTAATCAAAAAATGAATGAAGATCATTATTAGAATCTATGTTTGCCTCATTCGAGGCATGA
324 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGA
* * * * * *
2382791 GCTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAGTATCGT
389 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAT
*
2382856 GTATCCTAATAAGAAGACTATG
454 GTATCCTAATGAGAAGACTATG
* * * * * *
2382878 TTTAAGGTGCTTATTCTTGAAAAGAATTGGGAGTAGTATGAGTATTCATTTTTGTCTTATTCAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * *
2382943 AGATAAACTTTGATTCTACCAAAAATGGTGGAGAAAAAGCTTTCCTTGCGACACC-AAGAATCAA
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * *
2383007 TGTCCTATATCCTAATGAAGAGAATATGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTT
131 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * *
2383072 ACGAGAATGGATTCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAA
196 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * *
2383137 AAGATTTTCATGCAAAAGAAAATCATCGATATCCTTAATCCAAATGAGGAGAATGTGTTTATAGT
261 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
** * * *
2383202 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACATTTGGCTCATTTGTGGTACGGAC
326 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
* * *
2383267 TTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTGTTGTGAAACCAAAGCACCAATATCATGT
391 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATGT
* * *
2383332 ATCCTAAAGAGAAGGCTCTG
456 ATCCTAATGAGAAGACTATG
* ** *
2383352 TTTAAGATGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTGCTCATGTTTGTCTTAATTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * * *
2383417 AGATAAATTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTCTCTTACTACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * * * *
2383482 TTGTTAGGTATCCTAATGAAGAGATTGTGTTTTAGGATCCAAATCTTGAAAAGAATGGAGATTGT
130 ATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * * ** *
2383547 TACTAGAATCGACGTTTAACTTATCTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * *
2383612 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGATAATGTATTTGTAG
260 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * *
2383677 TGCCTAATCACAAAATAAAAGAATATCAATTA-TGGAATCCACGTTTGGCTCATTTGAGGCACGA
325 TGCCTAATCACAAAATGAATGAAGATCAA-TACTAGAATCCATGTTTGGCTCATTTGAGGCACGA
* * *
2383741 ACTTAGACTTTACGAAAATTAGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCCACAT-T-
389 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-CCA-ATATC
* * * **
2383804 GTGTATCCTTATGAGAAGGCTACA
452 ATGTATCCTAATGAGAAGACTATG
* * *
2383828 TTTATGGTGCCTAATCCTGAAAAGAAT-GGG-A-A--AT-AG---T-ATG--AG---T-TTT---
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2383874 ---CAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGTGACACGAAAGCATCAA
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * *
2383936 TGCCATGTATCCTAATGCAGGGAATGTGTTTTTGAATCCTAATCTTGAAAAGAATGGAGATTGTT
131 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * *
2384001 ACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAA
196 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
*
2384066 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAGAGT
261 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * * *
2384131 GCCTAATCAAAAAATGAATGAAGATCATTATTAGAATCTATGTTT-ACATCATTTGGGGCACGAA
326 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGC-TCATTTGAGGCACGAA
* * * * *
2384195 TTTAGACTTTACAAAAATTAGTGGGAAGTAAGCCTTTCTTGCGAAACAAAAGCACCAATACCATG
390 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATG
* *
2384260 TATCATAATGAGAAGACAATG
455 TATCCTAATGAGAAGACTATG
* * **
2384281 TTTAAGGCT-CCCAATCTTGAAACGAATGCAGAATAGTATGAGTATTCATGTTTGTCTTATTTAA
1 TTTAAGG-TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAA
* * *
2384345 GAGACAAACCTTCATTCTATCAAAAATGGTGG-AAAAAAGCTTTTCTTGCGACCCCAAAGCATCA
65 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
2384409 ACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGAATCCTAATCTTGAAAAGAATGGAGATTGT
130 ATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* ** *
2384474 TACTAGAATCGATGCTTGTCTTATTTAAGATATGAACTTTGATTTTAAGGAAAATTGGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
2384539 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGATAATGTATTTATAG
260 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * * * *
2384604 TGTCTAATCACAAAATAAAAGAATATCAATACTGGAATCCAAGTTTGGCTCATTTGAGGCATGAA
325 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAA
* * * * * *
2384669 CTTAGACTTTACAAAAATTAGTGGGAAGAAAACCCTTCTTGTGAAACAAAAGCACCAACATCATG
390 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATG
*
2384734 TATCTTAATGAGAAGACTATG
455 TATCCTAATGAGAAGACTATG
** *
2384755 TTTAAGGTGCCTAATCTTGAAAAGAATGCAGAATAGTATGAGTATTCATGTTTGTTTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * *
2384820 AGGCAAAATTTGATTCTATCAAAAACGGTGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAATGGTG-GAAAAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
2384885 TTGTCATGTATCCCAATGAAGAGAATGTGTTTTTGGATCTCAATCTTGAAAAGAATGGAGATTGT
130 ATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
*
2384950 TATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT----------
195 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * *
2385005 -AAG--------GC-AAAGAAAATCATCAATAACATTAATCTTAATGCGGAGAATGTGTTTATAG
260 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * *
2385060 TGCCTAATCACAAAATGAATGAAGATTAATTCTAGAATCCACGTTTGGCTCATTTGAGGCACGAA
325 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAA
* * * * ** *
2385125 CTTAGACTTTGCGAAAATTGGTAGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATTAATATCGTG
390 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATG
* * * **
2385190 TACCCTTATGAGAAGCCTACA
455 TATCCTAATGAGAAGACTATG
* * * *
2385211 TTTATGGTGCCTAATCCTGAAAAGAATGGGGAATAGTGTGAGTTTTCATGTTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2385276 AGACAAACTTTGATTCTATCAAAAAAGGTAGAAAGAAAAGCTTTTCTTGC-AGCACGAAAGCATC
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGA-CACCAAAGCATC
* * * *
2385340 AATGTCATGTATCCTAATGAAGGGAATGTGTTTCTGAATCCCAATCTTGAAAAGAATGGAGATTA
129 AATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * *
2385405 TTATGAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG
194 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* *
2385470 AAAAGATTTCTATGCAAAA-AGAAATCATCAATATCATTTATCCTAA-AAGAGAGAAATGTGTTT
259 AAAAGATTTCCATGCAAAAGA-AAATCATCAATATCATTTATCCTAATGAG-GAG-AATGTGTTT
* * * * *
2385533 CTAGTGCCTAATCAAAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGCCTCATTTGAGGCA
321 ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCA
* * * * *
2385598 TGAACCTAGACTTAACAAAAATTGGT-GGAATGAAAGCCTTTCTTGCGAAGCCACAGCACCAATA
386 CGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTGCGAAACCAAAGCACCAATA
** * *
2385662 TTGTGTATCTTAATGAGAAGACCA--
450 TCATGTATCCTAATGAGAAGACTATG
* * * *
2385686 TTTAAGGTGCTTATTCTTG-AAACAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
** * *
2385750 AGACAAACTTTGATTCTGCCAAAAATGGTGGAAAAAAAGATTTTCTTGTGACACC-AAGCATCAA
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * *
2385814 TGTCATGTATCCTAATCAAGAGAATGTGTTTTTGGGTCCCAATCTTGAAAAGGATGGAGATTGTT
131 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * *
2385879 ACGAGAATGGATGCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
196 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * * *
2385944 AAGGTTTCCATGCAAAAGAAAATCATCGATATCATTAATCCTATTGACGAGAATGTGTTTACAGT
261 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
2386009 GCCTAATCACAAAATGAGTGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGTGGTACAAAC
326 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
* * * *
2386074 TTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGTGAAACCAAAGCACCAATACCATGT
391 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATGT
* * *
2386139 ATCTTGAA-GAAAAGGCTATG
456 ATCCT-AATGAGAAGACTATG
* * * *
2386159 TTTAAGGTGCCTAATCTTGGAAAGAGTGGAGAATAGTATGAGTGTTCATGTTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * *
2386224 AGACAAACTTTGATTCTATTAAAAATGATAGAAAGAAAAGATTTTCTTGCTACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * * * * *
2386289 ATATTAGGTATCCTAACGAAAAGAATGTGTTTTAGGATCCAAATCTTGAAAAGAATGGAGATTGT
130 ATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* * * * * *
2386354 TACAAGAATTGACGCTTGTCTTATTTAAGGGATGAACTTTGACTTTGAGGAAAATAAGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * * *
2386419 AAAGATTTCCACGCAAAAGAAAATCACCAATATCATTTATCCTAATAAGGATAATGTATTTATAG
260 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
** * * * * *
2386484 TGCCTAATCATGAAATAAAAGAATATCAATACTGGAATCCATGTTTGGCTCATTTGAGGCACAAA
325 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAA
* * *
2386549 CTTCGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAACCAAAGCATCCACAT-T-G
390 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-CCA-ATATCA
2386612 TGTATCC---T--------TA--
453 TGTATCCTAATGAGAAGACTATG
* * * *
2386622 --T-A-GTGCCTAATCTTAAAAAAAATAGGGAATAG--T--G------TG--AG---T-TTT---
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
** * * * *
2386664 ---CAAACTTTGATTCTATCAAAAGCGGT-GAAAAAAAGTTTTTCTTGCAACACCAAAGCGTCAT
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * *
2386725 TGTCATGTATCCTAATGAAGAGAATATGTTTTAGGATCCAAATCTTGAAAAGAATGGAGATTGTT
131 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * * * *
2386790 ACTAGAATTGACGCTTGTCTTATTTAAGGGATGAACTTCGATTTTAAGGAAAATAAGGCAACGAA
196 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * *
2386855 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACT-AGGATAATATATTTATAG
261 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAG
* * * * * * * *
2386919 CGCCTAATCCCAAAAT-AATAGAATATTAATACTGGAATCTATGTTTGCCTCATTTGAGGTACGA
325 TGCCTAATCACAAAATGAAT-GAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGA
* * *
2386983 ACTTAGACTTTACATAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACAAAAGCACCAATACCAT
389 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAT
2387048 GTATCCTAATGAGAAGACTATG
454 GTATCCTAATGAGAAGACTATG
* * * *
2387070 TTTAAGGTGCCTAATCTTGAAAAGAATGCGAAATATTATGAGTATTCATGTTTATCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * **
2387135 AGACAAACTTT-ATTCTATCAAAAACGGTGG-AAAAAAGCTTTTCCTGTGACACCAAAGTGTCAA
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
2387198 TGTCATGTATCCTATTGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTT
131 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * * *
2387263 ACTAGAATCTATGCTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGGAAAATAAGGCAAAAAA
196 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
** * * *
2387328 AAGATTTCCATATAAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATCTATTTATAGT
261 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * ** *
2387393 GCCTAATCACAAAATGAATGAATATCTATACTGGAATCCATGTTTGGCTCATTTGAGTAACAAAC
326 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
* ** * *
2387458 TTAGACTCTATGAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCACGT
391 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATGT
*
2387523 ATCCTAATAAGAAGACTATG
456 ATCCTAATGAGAAGACTATG
* * * *
2387543 TTTAAGGTGCCCAATCTGGAAAAGAATGCGGAATAGTATGAGTATTCATATTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2387608 AGTCAAACTTTGATTCTATCAATAATGGTAGAAAGAAAAGCTTTTCTTGCGACA-CAAATGCATC
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAA-GCATC
* *
2387672 AATGTCATGTATCCTGATGAAGAGAATGTGTTTTTGGA-CCCTAATCTTTAAAAGAATGGAGATT
129 AATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCC-AATCTTGAAAAGAATGGAGATT
* * * * *
2387736 ATTACGGGAGTCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAATATATGGCAAA
193 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* * ** *
2387801 GAAAAGATTTCTATTG-AAAAGAAAATCATCAATAACATGAATCTTAATGAGGAGAATGTGTTTA
258 GAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*
2387865 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGCA-
322 TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCAC
* * * *
2387929 GAACTTAAACTTTACAAAAGTTGGTGGG-AGAAAAGCCTTCCTCGCGAAACCAAAGCACCAATAT
387 GAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCACCAATAT
*
2387993 CATGTATCCTAATGAAAAGACTATG
451 CATGTATCCTAATGAGAAGACTATG
* ** * * * * *
2388018 CTTGGGGGGCCCAATCTTGAAAAGAATGTGGAATAGCATGAGCATTCATGTTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
* *** *
2388083 AGATAGTTTTTGATTCTATCAAAAGTGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAATGGTGG-AAAAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
2388148 ATGTCATGTATCCTAATGAAGGGAAGGTGCTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
130 ATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
* *
2388213 TACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTAATTTTAA-GAAAATAGGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * * * * *
2388277 AAAGATTTCAATGCAAAAGAAAATCATCAACATCATTTATTCTACTGAGGATAATGTATTTATTG
260 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
2388342 TGCCTAACCACAAAATGAATGAATATCAATACTAGAATACATGTTTGGCTCATTTGAGGCACAAA
325 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAA
* * *
2388407 CTTAGACTTTACGAAAATTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCACCAATATCATG
390 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATG
* *
2388472 TATCCTAATGAGAAGAATATC
455 TATCCTAATGAGAAGACTATG
* * *
2388493 TTTAAGGTGCCTAATCTTGAAAAGAATTGGGAATAGTATTAGTATTCATCTTTGTCTTATTTAAG
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
** **
2388558 AGACAAACTTTGATTCTATCAAAAACAGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCGT
66 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
2388623 TGTCATGTATCCTAATGAAGAGAATGTGTTTCTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
131 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * *
2388688 ACGGGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAA
196 ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * *
2388753 AAGATTTTCATGCAAAAGAAAATCATCAATAACATTAATCTTAATGAGGAGAATGTGTTTATAGC
261 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* **
2388818 GCCTAATCACAAAATGATTGAAGATCAATACTAGAATCCACATTTGGCTCATTTGAGGCACGAAC
326 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
* * * * *
2388883 TTAGACTTTACGAAAATTGGTGAGTAGAAAGCCTTTCTTGAGAAACCAAAGCATCC-ATATCGTG
391 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCATG
* ***
2388947 TATCCTTAA-GAGAAGGCTGCA
455 TATCC-TAATGAGAAGACTATG
* * * * * * *
2388968 TTTATGGTGCCTAATCCTGAAAAGAA-CGGGACATGGTGTGATTTTTCATGTTTGTCTTATTTAA
1 TTTAAGGTGCCTAATCTTGAAAAGAATGGGGA-ATAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * *
2389032 GAGATAAACTTTGATTCTTTCAAAAACT-GTGGAAAGAAAAGCTTTT-TGTACAACACCAAAGCA
65 GAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAA-AAAAGCTTTTCT-TGCGACACCAAAGCA
* * * *
2389095 ACAATGTCTTGTATCCTAATGAAGAGAATGTGTATTTGGATCCCAATCTTGAAAAGGATGGAGAT
127 TCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
** * * * *
2389160 TGTTGTGAGAATCGATGCTTGCCTTATTTAAGAGATGGACTTTGATTTTAAGTAAAATAGGGC-A
192 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
2389224 AGAAAAGA
257 AGAAAAGA
2389232 GTGAAAATGG
Statistics
Matches: 5458, Mismatches: 754, Indels: 285
0.84 0.12 0.04
Matches are distributed among these distances:
433 2 0.00
434 5 0.00
435 314 0.06
436 5 0.00
437 22 0.00
438 1 0.00
443 3 0.00
444 1 0.00
446 2 0.00
447 1 0.00
449 2 0.00
450 1 0.00
451 3 0.00
452 30 0.01
453 334 0.06
454 30 0.01
455 6 0.00
456 391 0.07
457 3 0.00
458 2 0.00
459 26 0.00
460 3 0.00
461 2 0.00
462 3 0.00
463 3 0.00
464 1 0.00
465 6 0.00
466 3 0.00
467 5 0.00
468 4 0.00
469 3 0.00
470 2 0.00
471 132 0.02
472 171 0.03
473 457 0.08
474 1248 0.23
475 832 0.15
476 1252 0.23
477 143 0.03
478 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (475 bp):
TTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATGT
ATCCTAATGAGAAGACTATG
Found at i:2384991 original size:159 final size:157
Alignment explanation
Indices: 2383876--2384994 Score: 556
Period size: 159 Copynumber: 7.1 Consensus size: 157
2383866 TGAGTTTTCA
* * * * * **
2383876 AACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGTGACACGAAAGCATCAATGCCA
1 AACTTTGATT-TATCAAAAATGGTGAAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCA
* * * **
2383941 TGTATCCTAATGCAGGGAATGTGTTTTTGAATCCTAATCTTGAAAAGAATGGAGATTGTTACAAG
65 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATTGTTATGAG
2384006 AATCGATGCTTGTCTTATTTAAGGGATG
130 AATCGATGCTTGTCTTATTTAAGGGATG
*** * * * * * * *
2384034 AACTTTGATATTAAGTAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
1 AACTTTGAT-TTATCAAAAAT-GGTG-AAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * * ** * **
2384098 CATTTATCCTAATGAGGAGAATGTG--TTTAGAGTGCCTAATC-AAAAAATGAATGAAGATCATT
63 CATGTATCCTAATGAAGAGAATGTGTTTTTGGA-T-CCTAATCTTGAAAA-GAATGGAGATTGTT
* * * * *
2384160 ATTAGAATCTATG-TT-TACATCATTT-GGGGCACG
125 ATGAGAATCGATGCTTGT-C-TTATTTAAGGG-ATG
* ** ** * * *
2384193 AA-TTTAGACTTTA-CAAAAATTAGTGGGAAGTAAGCCTTTCTTGCGAAACAAAAGCACCAATAC
1 AACTTT-GA-TTTATCAAAAA-TGGTGAAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * ** * * * * *
2384256 CATGTATCATAATG-AGAAGACA-ATGTTTAAGGCTCCCAATCTTGAAACGAATGCAGAATAG-T
63 CATGTATCCTAATGAAG-AGA-ATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAG-ATTGTT
* * * **
2384318 ATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA
125 ATGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * **
2384351 AACCTTCATTCTATCAAAAATGGTG-GAAAAAAGCTTTTCTTGCGACCCCAAAGCATCAACGTCA
1 AACTTTGATT-TATCAAAAATGGTGAAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCA
* *
2384415 TGTATCCTAATGAAGGGAATGTGTTTTTGAATCCTAATCTTGAAAAGAATGGAGATTGTTACT-A
65 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATTGTTA-TGA
**
2384479 GAATCGATGCTTGTCTTATTTAAGATATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2384508 AACTTTGATTT-TAAGGAAAATTGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
1 AACTTTGATTTATCA--AAAA-TGGTG-AAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATA
* * * * ** * **
2384571 TCATTTATCCTAAT-AAGGATAATGTATTTATAGTG-T-CTAATC-ACAAAATAAAAGA-ATATC
62 TCATGTATCCTAATGAA-GAGAATGTGTTT-TTG-GATCCTAATCTTGAAAAGAATGGAGAT-T-
** * * * * * * *
2384631 AATACTG-GAATCCAAGTTTGGCTCATTTGAGGCATG
122 GTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * ** * * *
2384667 AACTTAGACTTTA-CAAAAATTAGTGGGAAGAAAA-CCCTTCTTGTGAAACAAAAGCACCAACAT
1 AACTTTGA-TTTATCAAAAA-TGGT-GAAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATAT
* * * ** * *
2384730 CATGTATCTTAATG-AGAAGACTATGTTTAAGG-TGCCTAATCTTGAAAAGAATGCAGAATAG-T
63 CATGTATCCTAATGAAG-AGAATGTGTTTTTGGAT-CCTAATCTTGAAAAGAATGGAG-ATTGTT
* * *
2384792 ATGAGTATTC-ATGTTTGTTTTATTTAAGAGGCA--
125 ATGAG-AATCGATGCTTGTCTTATTTAAG-GG-ATG
* * * * * *
2384825 AAATTTGATTCTATCAAAAACGGTGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCATTGTC
1 AACTTTGATT-TATCAAAAATGGTG-AAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATC
*
2384890 ATGTATCCCAATGAAGAGAATGTGTTTTTGGAT-CTCAATCTTGAAAAGAATGGAGATTGTTATG
64 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCT-AATCTTGAAAAGAATGGAGATTGTTATG
2384954 AGAATCGATGCTTGTCTTATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
2384984 AACTTTGATTT
1 AACTTTGATTT
2384995 TAAGGAAAAT
Statistics
Matches: 691, Mismatches: 202, Indels: 136
0.67 0.20 0.13
Matches are distributed among these distances:
155 2 0.00
156 10 0.01
157 123 0.18
158 223 0.32
159 315 0.46
160 16 0.02
161 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
AACTTTGATTTATCAAAAATGGTGAAAAAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
GTATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATTGTTATGAGA
ATCGATGCTTGTCTTATTTAAGGGATG
Found at i:2387776 original size:159 final size:157
Alignment explanation
Indices: 2386666--2401420 Score: 2566
Period size: 159 Copynumber: 93.1 Consensus size: 157
2386656 TGAGTTTTCA
* * * * *
2386666 AACTTTGATTCTATCAAAAGCGGTGAAA-AAAAGTTTTTCTTGC-AACACCAAAGCGTCATTGTC
1 AACTTTGATTCTATCAAAAGTGGTGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATC
* * * * *
2386729 ATGTATCCTAATGAAGAGAATATGTTTTAGGATCCAAATCTTGAAAAGAATGGAGATTGTTACTA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
* *
2386794 GAATTGACGCTTGTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * * * * * ** *
2386823 AACTTCGATTTTAAGGAAAA-TAAGG-CAACGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
1 AACTTTGATTCT-ATCAAAAGT--GGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * * ** * * * *
2386886 TCATTTATCCTAACT-AGGATAATATATTTATAGCG-CCTAATC-CCAAAATAATAGAATATTAA
63 TCATGTATCCTAA-TGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAAGAAT-GGAGATTAT
* * * * * * *
2386948 TACTG-GAATCTATGTTTGCCTCATTTGAGGTACG
124 TAC-GAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
2386982 AACTTAGACTT-TA-CATAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACAAAAGCACCAATA
1 AACTTTGA-TTCTATCA-AAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * ** * * *
2387044 CCATGTATCCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGCGA-AATATT
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATG-GAGATTATT
* * * * * **
2387107 ATGAGTATTC-ATGTTTATCTTATTTAAGAGACA
125 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
** * * * * ** *
2387140 AACTTT-ATTCTATCAAAAACGGTGGAA-AAAAGCTTTTCCTGTGACACCAAAGTGTCAATGTCA
1 AACTTTGATTCTATCAAAAGTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCA
* * * *
2387203 TGTATCCTATTGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACTAG
66 TGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGAG
* *
2387268 AATCTATGCTTGTCTTATTTAAGGGACG
130 AATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * * * *** ** *
2387296 AACTTTGATTTTAAGGAAAA-TAAGG-CAAAAAAAAGATTTCCATATAAAAGAAAATCATCAATA
1 AACTTTGATTCT-ATCAAAAGT--GGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * * ** * *
2387359 TCATTTATCCTAATGAGGATAATCTATTTATAGTG-CCTAATC-ACAAAATGAATGAATATCTA-
63 TCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGAT-TAT
* * * * * ** **
2387421 TACTG-GAATCCATGTTTGGCTCATTTGAGTAACA
124 TAC-GAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2387455 AACTTAGACTCTATGAAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCACCAATATC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * ** * * * * *
2387519 ACGTATCCTAAT-AAGAAGACTATGTTTAAGGTGCCCAATCTGGAAAAGAATGCG-GAATAGTAT
65 ATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATG-GAGATTATTAC
* ** * *
2387582 GAGTATTC-ATATTTGTCTTATTTAAGAG-TCA
127 GAG-AATCGATGCTTGTCTTATTTAAGGGAT-G
* *
2387613 AACTTTGATTCTATCAATAA-TGGTAGAAAGAAAAGCTTTTCTTGCGACA-CAAATGCATCAATG
1 AACTTTGATTCTATCAA-AAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAA-GCATCAATA
* *
2387676 TCATGTATCCTGATGAAGAGAATGTGTTTTTGGACCCTAATCTTTAAAAGAATGGAGATTATTAC
63 TCATGTATCCTAATGAAGAGAATGTGTTTTTGGACCC-AATCTTGAAAAGAATGGAGATTATTAC
* *
2387741 GGGAGTCGATGCTTGTCTTATTTAAGGGATG
127 GAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * * ** *
2387772 AACTTTGATTTTAAGGAATATA-TGG-CAAAGAAAAGATTTCTATTG-AAAAGAAAATCATCAAT
1 AACTTTGATTCT-ATCAA-A-AGTGGTGAAAGAAAAGCTTT-TCTTGCGAAACCAAAGCATCAAT
* * * * * * ** * * *
2387834 AACATGAATCTTAATGAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCAA
62 ATCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTAT
* * * * * * * *
2387897 TACTAGAATCCACGTTTGGCTCATTTGAGGCA-G
124 TACGAGAATCGATGCTTGTCTTATTTAAGGGATG
** ** * * * *
2387930 AACTTAAACTT-TA-CAAAAGTTGGTGGGAGAAAAGCCTTCCTCGCGAAACCAAAGCACCAATAT
1 AACTTTGA-TTCTATCAAAAG-TGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * *** * * ** *
2387993 CATGTATCCTAATGAAAAGACTATGCTTGGGGGGCCCAATCTTGAAAAGAATGTG-GAATAGCAT
64 CATGTATCCTAATGAAGAGAATGTG-TTTTTGGACCCAATCTTGAAAAGAATG-GAGATTATTAC
* * *
2388057 GAGCATTC-ATGTTTGTCTTATTTAAGAGAT-
127 GAG-AATCGATGCTTGTCTTATTTAAGGGATG
** * * *
2388087 AGTTTTTGATTCTATCAAAAGTGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
1 A-ACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * *
2388152 CATGTATCCTAATGAAGGGAAGGTGCTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACT
64 CATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACG
2388217 AGAATCGATGCTTGTCTTATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * * ** * *
2388247 AACTTTAATTTTAAGAAAA-TAGG-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAACA
1 AACTTTGATTCTATCAAAAGT-GGTG-AAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAATA
* * * * * * * *** * * * *
2388309 TCATTTATTCTACTGAGGATAATGTATTTATTGTG-CCTAA-CCACAAAATGAATGAATATCAAT
63 TCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTATT
* * * * * * **
2388372 ACTAGAATAC-ATGTTTGGCTCATTTGAGGCACA
125 ACGAGAAT-CGATGCTTGTCTTATTTAAGGGATG
* * * ** * *
2388405 AACTTAGACTT-TA-CGAAAATTGGTGGGAAG-AAAGCCATTCTTGCAAAACCAAAGCACCAATA
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * ** * * * *
2388467 TCATGTATCCTAATG-AGAAGAATATCTTTAAGGTGCCTAATCTTGAAAAGAATTGG-GAATAGT
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAA-TGGAGATTATT
** * * **
2388530 ATTAGTATTC-AT-CTTTGTCTTATTTAAGAGACA
125 ACGAG-AATCGATGC-TTGTCTTATTTAAGGGATG
*** * ** *
2388563 AACTTTGATTCTATCAAAAACAGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCGTTGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * *
2388627 ATGTATCCTAATGAAGAGAATGTGTTTCTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGG
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2388692 GAATCGATTCTTGTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * * * ** * *
2388721 AACTTTGATTTTAAGGAAAA-TAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAA
1 AACTTTGATTCT-ATCAAAAGTGGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * ** * * * *
2388785 CAT-TAATCTTAATGAGGAGAATGTGTTTATAGCG-CCTAATC-ACAAAATGATTGAAGATCAAT
64 CATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTATT
* * *** * * * * *
2388847 ACTAGAATCCACATTTGGCTCATTTGAGGCACG
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
2388880 AACTTAGACTT-TA-CGAAAATTGGTGAGTAG-AAAGCCTTTCTTGAGAAACCAAAGCATCCATA
1 AACTTTGA-TTCTATC-AAAAGTGGTGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * * *
2388942 TCGTGTATCCT--T-AAGAGAAGGCTGCATTTATGGTGCCTAATCCTGAAAAGAACGG-GA-CAT
63 TCATGTATCCTAATGAAGAGAATG-TG--TTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTAT
** *** * * *
2389002 GGTGTGATTTTTC-ATGTTTGTCTTATTTAAGAGATA
124 --TACGA-GAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
2389038 AACTTTGATTCTTTCAAAAACT-GTGGAAAGAAAAGCTTTT-TGTAC-AACACCAAAGCAACAAT
1 AACTTTGATTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCT-TGCGAA-ACCAAAGCATCAAT
* * * * * *
2389100 GTCTTGTATCCTAATGAAGAGAATGTGTATTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTG
62 ATCATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTA
* * *
2389165 TGAGAATCGATGCTTGCCTTATTTAAGAGATG
126 CGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * *
2389197 GACTTTGATTTTAAGTAAAATAGGGCAAGAAAAGAGTGAAAATGGTGAAAGCCTTTCTTGAGAAA
1 AACTTTGA--TT--CT---AT----CAA-AAGTG-GTG-AAA--G-AAAAGCTTTTCTTGCGAAA
* * * ** ** * * * *
2389262 CCAAAGCATCCATATCGTGTATCCTTATG-AGAAGGCTACGTTTATGCTACCTAATCCTGAAAAG
49 CCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTTG-GACCCAATCTTGAAAAG
* * ** * ** ** * * * * **
2389326 AAAGGGGAAGAGTGTGAGTTTTC-ACGTTTGTCTTATTTTAGAGACA
112 AATGGAGATTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* ** * * ** *
2389372 AACTTTTATTCTATCAAAAAAGGTGGAGAGAAAAGCTTTTCTTGCGACATGAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
2389437 ATGTATCCTAATAAAGAGAATGTTTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
2389502 GAATCGATGCTTGTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
** * * * * ** *
2389531 AACTTTGATAT-TAAGT-AAAA-TAAGG-CCAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
1 AACTTTGAT-TCT-A-TCAAAAGT--GGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * ** * * * *
2389592 TATC-TTTAATCTTAATG-AGTAGAATGTGTTTATTATG-CCTAATC-ACAAATTGACTGAATAT
61 TATCATGT-ATCCTAATGAAG-AGAATGTGTTT-TT-GGACCCAATCTTGAAA-AGAATGGAGAT
* * * * * * * * * *
2389653 CAATT-CTAGAATCCACGTTTGGCTCATTTGAGGCACG
121 -TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * * *
2389690 AACTTAGACTT-TAAAAAAATTTGTTGGAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT
1 AACTTTGA-TTCTATCAAAA-GTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * ** * * *
2389753 CGTGTATCATAATG-AGAAGACTATG-TTTAAGATGCCTAATCTTGAAAAGAATGTG-GAATAGT
64 CATGTATCCTAATGAAG-AGAATGTGTTTTTGGA--CCCAATCTTGAAAAGAATG-GAGATTATT
* * * * * **
2389815 ATGAGTATTC-ATGTTTGTGTTATTTAAGTGACA
125 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * *
2389848 AACTTTGATTCTATCAAACACGAT-G-GAAAGAAAAGCTTTTCTTGCGACACGAAAGCATCAATG
1 AACTTTGATTCTATCAAA-A-G-TGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * *
2389911 TCATGTATCCTAATGAAGAGAATGTGTTTTTGGGTCCCAATCTTGAAATGCATGGAGATTGTTAC
63 TCATGTATCCTAATGAAGAGAATGTGTTTTT-GGACCCAATCTTGAAAAGAATGGAGATTATTAC
* ** *
2389976 GAGAATCGATGTTTCCCTTATTTAGGGGATG
127 GAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * ** *
2390007 AACCTTGATAT-TAAGT-AAAA-TAGG-GCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAA
1 AACTTTGAT-TCT-A-TCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * * *** * * *
2390068 TATCATTTATCCTAATGAGGA-AATTTTGTTTATAGTG-CCTAAT-AAAAAAATGAACGAAGATC
61 TATCATGTATCCTAATGAAGAGAA-TGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATT
** * * * * * * *
2390130 ATTATTAGAATCCATGTTTGCCTCATTTGAGGCACG
122 ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * *
2390166 AGCTTAGACTT-TA-CAAAACTTGGTGGGAAG-AAAGCCTTTCTTGTGAAACCAAAGCACCAATA
1 AACTTTGA-TTCTATCAAAA-GTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * ** * ** * * *
2390228 ACGTGTATCCTAAT-AAGAAGACTATGTTTAAGGTGCTTATTCTTGAAAA-AATTGG-GAGTAGT
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAA-TGGAGATTATT
* * ** ** **
2390290 ATGAGTATTC-ATTTTTGTCTTATTTAATAGACA
125 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
** * * *
2390323 AACTTTGATTCTATCAAAAACGATAGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
2390387 ATGTATCCTAATGAAGGGAAGGTGCTTTT-GATTCCCAATCTTGAAAAGAATGGAGATTGTTACT
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA--CCCAATCTTGAAAAGAATGGAGATTATTACG
2390451 AGAATCGATGCTTGTCTTATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * ** * *
2390481 AACTTTGATTTTAGGAAAA-TAGG-GCAAAGAAAAG-ATTTCAATGC-AAAAGAAATTCATCAAC
1 AACTTTGATTCTATCAAAAGT-GGTG-AAAGAAAAGCTTTTC-TTGCGAAACCAAA-GCATCAAT
* * * * * * * * * * *
2390542 ATCATTTGTCCTAATGAGGATAATGTATTTATTGTG-CCTAATC-AGAAAATGAATGAATATCAA
62 ATCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTAT
* * * * * * * * * **
2390605 TACTATAATCCACGTTTGGCTCATTTGAGGCACA
124 TACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * ** * * *
2390639 AACTTAGACTT-TAAAAAAATTTATTTG-AA-AAAAGTCTTAT-TTGCCAAACCAAAGCACCAAT
1 AACTTTGA-TTCTATCAAAA-GT-GGTGAAAGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAAT
* * * * ** * *
2390700 ATCGTGTATACTAATG-AGAAGACTATG-TTTAAGATGCCTAATCTTGAAAAGAATGCG-GAATA
62 ATCATGTATCCTAATGAAG-AGAATGTGTTTTTGGA--CCCAATCTTGAAAAGAATG-GAGATTA
* * * * * **
2390762 GTATGAGCATTC-ATGTTTGTCTTATTTAAGAGACA
123 TTACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * *
2390797 AACTTTGATTCTATCGAAAA-CGGTGGAAAAAAAAGCTTTTCTTGGGACACTAAAGCATCATTGT
1 AACTTTGATTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* ** * * *
2390861 CATGTATCCTAATGAAGGGAATGTGTTTTTAAATCCTAATCTTGAAAAGAATGGCGATTGTTA-G
64 CATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACG
* * *
2390925 TAGAGTTGATGCTTGTCTTATTTAAAGGATG
128 -AGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * ** * * *
2390956 AACTTTAATT-TCAAGAAAA-TAGG-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCAGCAAC
1 AACTTTGATTCT-ATCAAAAGT-GGTG-AAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAAT
* * * * * * * *** * * * *
2391017 ATC-TTTGATTCTATTGAGGATAATGTATTTATTGTG-CCTAA-CCACAATATGAATGAATATCA
62 ATCATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAA-AAGAATGGAGATTA
* * * * * * * *
2391079 ATACTAGAATAC-ATGTTTGGCTCATTTGAGGCACG
123 TTACGAGAAT-CGATGCTTGTCTTATTTAAGGGATG
* * * * * *
2391114 AACTTAGACTT-TA-CGAAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCACCAATA
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
** ** ** * * * * *
2391176 TCATGTATCCTAATG-AGAAGAATACGTTTAAGGTGCTAATCTTGAAAAGAATGGGGAATAGTAT
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGGACCCAATCTTGAAAAGAATGGAGATTATTAC
* * * **
2391240 TAGTATTC-AT-CTTTGTCTTATTTAAGAGACA
127 GAG-AATCGATGC-TTGTCTTATTTAAGGGATG
* ** * * * *
2391271 AACTTTAATTCTATCAAAAACGGTAGAAAGACAAGCTTTTCTTGCGACACAAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
2391336 TTGTATCCTAATGAAGAAAATGTGTTTTTGGATCCCAATCTTGTAAAGAATGGAGATTGTTAGGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2391401 GAATCGATGCTTGTCTTATTTAAGGGACG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * ** *
2391430 AACTTTGATTTTAAGGAAAA-TAGG-GAAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATA
1 AACTTTGATTCT-ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * * ** * * *
2391493 ACTTGAATCTTAATGAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCAAT
63 TCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTATT
* * * * * * * *
2391556 ACTAGAATCCACGTTTGGCTCATTTAAGGCACG
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * * *
2391589 AACTTAGACTT-TA-CGAAAATTAGTG-GGGTGAAAG-TCTTTCTTGAGAAACCAAAGCATCCAT
1 AACTTTGA-TTCTATC-AAAAGTGGTGAAAG-AAAAGCT-TTTCTTGCGAAACCAAAGCATCAAT
** ** * * * * * * *
2391650 ATCATGTATCC-ATAT-AAGAAGGCTACGTTTATGGTGCCTAATCCTAAAAAGAAAGG-GAAATA
62 ATCATGTATCCTA-ATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAG-ATTA
* * ** * * ** **
2391712 GTATGAGTTTTC-AAGTTTGTCTTATTTAAGAAACA
123 TTACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
** * * * * *
2391747 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACGAAAGCCTCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * *
2391812 ATGTGT-C--ATTAAAAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAAATTGTTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
2391874 GAATCGATGCTTGTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * ** *
2391903 AACTTTGATAT-TAAGT-AAAA-TAGG-CAAAGACAAGATTTCCCTGCAAAAAAAAAAAACATCA
1 AACTTTGAT-TCT-A-TCAAAAGT-GGTGAAAGAAAAGCTTTTCTTGC--GAAACCAAAGCATCA
* * * * ** * *
2391964 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATC
60 ATATCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATT
** * * * * * * *
2392027 AACACTAGAATCAATGTTTGGCTCATTTAAGGCACG
122 ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * **
2392063 AACTTAGA--CTTTCGAAAATTGGTGGGATG-GAAGCTTTTCTTGAGAAACCAAAGCATCCGTAT
1 AACTTTGATTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * *
2392125 CATGCATCCT--T-AAGAGAAGGCTACGTTTATGGTGCCTAATCTCGAAAAGAAAGG-GA-AATG
64 CATGTATCCTAATGAAGAGAATG-T--GTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTAT-
** ** * ** **
2392185 GTGTGAGTTTTC-ATGTTTGTCTTATTTAAGAAACA
124 -TACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2392220 AATTTTGATTTTATCAAAAATGGTGGAAAAAAAAACTTTTCTTACGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
2392285 TTGTATCCTAATGAAAAGAATGTGTTTTTGGATCCCAATCTTGAAAATG-ATGGAGATTGTTGCG
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAA-GAATGGAGATTATTACG
* *
2392349 AGAATCGATGCTTGCCTGATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
* * ** ** ** * * ** * ** *
2392379 AACTTTAATTTTAAGGAAAAAAGG-CCAGGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATC
1 AACTTTGATTCT-ATCAAAAGTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * *** * * * * *
2392443 AT-TAATCTTAATGAAGAGAACGCGTTTATAGTG-CCTAATCACAAAAAGAATGAACATCAATAT
65 ATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAAGAATGGAGATTATTAC
* * * * * * * * **
2392506 TAGAATCCACGTTTGGCTCATTTGAGGCACA
127 GAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * ** * *
2392537 AACTTAGACTT-TA-CGAAAATTAGT-AGGGTGAAAGCCGTTCTTGAGAAACCAAAGCATCCATA
1 AACTTTGA-TTCTATC-AAAAGTGGTGAAAG-AAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* ** ** * * * * * * *
2392599 TCATGTATCCTTATG-AGAAGGCTACGTTTATGCTG-TCTAATCCTGAAAAGAAAAGG-GAATAG
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTG--GACCCAATCTTGAAAAG-AATGGAGATTAT
** ** * * **
2392661 TGTGAGTTTTC-A-ACTTTGTCTTATTTAAGAGACA
124 TACGAG-AATCGATGC-TTGTCTTATTTAAGGGATG
* * *** * * *
2392695 AACGTTAATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGC-AACACGAAGGCATCAATGT
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATAT
* * *
2392759 CATGTATCCTAATGAAGGGAATGCGTTATTT-AACCCCAATCTTGAAAAGAATGGAGATTGA-TA
64 CATGTATCCTAATGAAGAGAATGTGTT-TTTGGA-CCCAATCTTGAAAAGAATGGAGATT-ATTA
* *
2392822 CGAGAATCGATGCATGCCTTATTTAAGGGATG
126 CGAGAATCGATGCTTGTCTTATTTAAGGGATG
** * * * * * ** *
2392854 AACTTTGAATT-TAAGAAAAATAGG-GCAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATA
1 AACTTTG-ATTCTATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * ** * * ** * * *
2392917 ACAT-TAATCTTAATGGGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCAA
63 TCATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTAT
* * * * * * * *
2392979 TACTAGAATCCACGTTTGGCTCATTTGAGGTATG
124 TACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * * * * *
2393013 AACTTAGA--CTTTCAAAAATTGGTGGGATAAAAGCCTTTCCTGAGAAACCAAAGCATCCATATC
1 AACTTTGATTCTATC-AAAAGTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * *
2393076 ATGTATCCT--T-AAGAGAAGGCTGCATTTATGGAGCCTAATCCTGAAAAGAAAGG-GA-AATGG
65 ATGTATCCTAATGAAGAGAATG-TG--TTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTAT--
** ** * * *
2393136 TGTGAGTTTTC-ATGTTTGCCTTATTTAAGAGA-G
124 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
** * ** ** * *
2393169 AAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCAATTCTTATGACACCAAAGCATCAATGT
1 -AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * *
2393234 CTTGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAATG-ATGGAGATTGTTGC
64 CATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAA-GAATGGAGATTATTAC
* *
2393298 GAGAATCGATGCTTGCCTGATTT-----ATG
127 GAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** ** * * ** * ** *
2393324 AACTTTGATTTTAAAGAAAAAAGGTG-AGGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATC
1 AACTTTGATTCT-ATCAAAAGTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * * ** * * *
2393388 AT-TAATCTTAATCAGGAGAACGTGTTTATAGTG-CCTAATC-ACAAAATAAGTGAAG-TTCAAT
65 ATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAAGAA-TGGAGATT-ATT
* * * * * * * * *
2393449 ACTAGAATCCACGTTTGGCTCATTTGAGGCACG
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * *
2393482 AACTTAGACTT-TA-CGAAAATTGGTG-AGGTGAAAGCCTTTCTTGAGAAACCAAAGCATCCATA
1 AACTTTGA-TTCTATC-AAAAGTGGTGAAAG-AAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * ** * * * * * * * * * *
2393544 TCATGTAGCCTTATG-AGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGAATAGTG
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATTA
* ** * * * * **
2393608 TGAGTTTTC-AAGTTTGTCTTATCTAAGAGACA
126 CGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2393640 AACTTTGATTTTATTAAAAATGGTGGGAAGAAAAGCTTTTCTTGTGACACAAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
2393705 ATGTATCCTAATGAAGGGATTGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTTTTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
* *
2393770 GAATCGATGCTTATCTTTTTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * **
2393799 AACTTTGA-T-AAGT-AAAA-TAGG-GCAAA-AAATAGATTTCCATAC-AAAAGAAA--ATCAAT
1 AACTTTGATTCTA-TCAAAAGT-GGTG-AAAGAAA-AGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * * * * ** * * * *
2393855 ATCATTTATCCTAATTAGGAGAATATGTTTATAGTG-CCAAATC-AAAAAATGAATGAATATCAA
62 ATCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTAT
* * * * * * *
2393918 TACTAGAATCCATGTTTGGCTTATTTGAGGCACG
124 TACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * ** *
2393952 AACTTAGACTT-TA-CGAAAATTGAAG-GGAA-AAAAGCCTTTCTTGAAAAACCAATGCATCAAT
1 AACTTTGA-TTCTATC-AAAAGTG--GTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * ** * * * * * *
2394013 CTCATGTATCCCT-ATG-AGAAAACTATGTTTACGGTGCCTACTCCTGAAAAGAATGGAGAATAA
62 ATCATGTAT-CCTAATGAAGAGAA-TGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTAT
* * * * * * **
2394076 TACAAGTATTC-TTGTTTGTCTGATTTAAGAGACA
124 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * *
2394110 AACTTTGATTCTATCAAAACTGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATTTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * *
2394175 AAGTATCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
* * * *
2394240 GAATCAAAGTTTTTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * *
2394269 AACTTTGATAT-TAAGT-AAAA-TAGG-GCAAAGAAAAGATTTTCATGCAAAAAAAAATCGTCAA
1 AACTTTGAT-TCT-A-TCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * * * ** * * * *
2394330 TATCAT-TAATCTTTATGAGGAGAATGTGTTTATAGTACCTAATC-ACAAATTGAGTGAAAGATC
61 TATCATGT-ATCCTAATGAAGAGAATGTGTTT-TTGGACCCAATCTTGAAA-AGAATG-GAGATT
* * * * * * * *
2394393 AATACCAGAATCCATGTTTGGCTTATTTGAGGTACG
122 ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * * *
2394429 AACTTAGACTT-TA-CAAAAATTGGTTGGAA-AAAAGCCTTTCCTACTAAACCAAAGCACCAAAA
1 AACTTTGA-TTCTATC-AAAAGTGG-TGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * ** * * * *
2394491 TCATGTATCCTAATG-AGAAGACTATG-TTTAAGATGCCTAATCTTAAAAAGAATGCGA-AATAG
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGGA--CCCAATCTTGAAAAGAATG-GAGATTAT
* * * * * **
2394553 TATGAGTATTC-ATG-TTCGCCTTTTTTAAGAGACA
124 TACGAG-AATCGATGCTT-GTCTTATTTAAGGGATG
* * * * * *
2394587 AACTCTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * *
2394652 ATGTATTCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2394717 GAATCGATACTTGTCTCT-TTTAAGGGATG
129 GAATCGATGCTTGTCT-TATTTAAGGGATG
* * * *** * ** *
2394746 CACTTTGATAT-TAAGT-AAAA-TAGG-GCAAAGAAAAGATTTCCACACAAAATAAAATCATCAA
1 AACTTTGAT-TCT-A-TCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * ** * * *
2394807 TATCATTTATCCTAAT-AAGGGAAATGTGTTTATAGTG-CCTAATC-AAAAAATGAGTGAAGATC
61 TATCATGTATCCTAATGAAGAG-AATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATT
** * ** * * * *
2394869 ATTATTAGAGTCCTTGTTTGCCTTATTTGAA-GCACG
122 ATTACGAGAATCGATGCTTGTCTTATTT-AAGGGATG
* * * * * * *
2394905 AACTTAGACTT-TA-CAAAAATTGGAGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCACCAATA
1 AACTTTGA-TTCTATC-AAAAGTGG-TGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
** * * * ** ** * * * *
2394967 TTGTGTATCTTAGTG-AGAAGACTACGTTTAAGGTGCCTAATCTTGAAAAGAATAGG-GAATAGT
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAAT-GGAGATTATT
* * ** * ** **
2395030 ATGAGTATTTATGTTTGTCTTATTTAAGAAACA
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
2395063 AACTTTGATTCTATAAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * ** * * * *
2395127 ACGCATCCTAATGAAGAGGATGTGTTTTTGGATCCCAATCTTGAAAAGGTTGTAGATTGTTTCTA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2395192 GAATCGGTGCTTGTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * * * ** *
2395221 AATTTTGATTTTAAGGAAAA-TAGG-GTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
1 AACTTTGATTCT-ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * ** ** * **
2395284 TCAAT-TATCCTAAAGAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAAATAAACATCG
63 TC-ATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-G-AATGGAGATTA
* * * * * ** *
2395346 TTTCTG-GAATCCATGTTTATCTCATTTAAGACACG
123 TTAC-GAGAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * *
2395381 AACTTAGACTT-TA-CAAAAGTTAGTGGGTAG-AAAGCCTTTCTTGCGAAAGCAAAGCAGT-AAT
1 AACTTTGA-TTCTATCAAAAG-TGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA-TCAAT
* * * * ** * * * * *
2395442 ATCGTGTATCTTAATG-AGAAGACTTTGTTAATGGTGCCTAATCTTGAAAAGAATGGGGAATAGT
62 ATCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATT
* ** * * **
2395506 ATGAGTGTTC-ATGTTTGTCTTATTTAAGAGACA
125 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * *
2395539 AACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
2395604 ATGTATCCTAATGAAGGGAATGTGTTTTTAGATCCCAATCTTGAAAAGAACGGAGATTGTTACTA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2395669 GAATCGATGCTTGTCTTATTTAGGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * * * ** * *
2395698 AACGTTGATTTTAAGGAAAA-TAAGG-AAAAGAAAAG-ATTTCAATGCAAAATAAAATCATTAAT
1 AACTTTGATTCT-ATCAAAAGT--GGTGAAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAAT
** * * ** *
2395760 ATCAT-TAATGTTAATGAGGAG-AT-TGTTCTTATAGTG-CCTAATC-ACAAAATGAATGAAGAT
62 ATCATGT-ATCCTAATGAAGAGAATGTGTT-TT-T-G-GACCCAATCTTGAAAA-GAATGGAGAT
* * * * * * * * * * *
2395820 CAATACTAGAATCCAGGTTTGGCTCATTTGAGGCACG
121 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * *
2395857 AACTTAGACTT-T-TCAAAAATTAATGGGAAG-AAAGCTTTTCTTGAGAAACCAAAGCGTCAATA
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * * * * * * * *
2395919 CCGTGTATCCTTATG-AGAAGACTATATTTATGGTGCCTAAT-ATGAAAAAGAATGGGGAATACT
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTG-AAAAGAATGGAGATTATT
* * * * *
2395982 AAGAGTATTC-ATGTTTGTCTTATTTAAGAGATA
125 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * *
2396015 AACTTTGATTCTGTCAAAGACGGTGGT--AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
1 AACTTTGATTCTATCAAA-A--GTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * *
2396078 TCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTAAAAAGGATGGAGTTTGTTAT
63 TCATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTAC
* *
2396143 GAGAATGGACGCTTG-CATTATTTAAGGGATG
127 GAGAATCGATGCTTGTC-TTATTTAAGGGATG
* * ** * * * * * ** ** *
2396174 AACATTGATTTTAAGAAAAATAGAGCAAAGAAAAGATTTCCAAGC-AAAGAAAATCATCAATATC
1 AACTTTGATTCTATCAAAAGTGGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * ** * ** ** *
2396238 GT-TAATCTTAATGAAGAGAATGTGTTTACAGTG-CCTAATC-ACAAAATGAATAAAGATCAATT
65 ATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGAT-TATT
* * * ** * ** * *
2396300 -CTAGAA-CCATGTTTCACTCATTGGAGGTACG
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2396331 AACTTAGA-CCT-TACAAAAATAGGTGGGAA-AATAGCCTTTCTTGCGAAACCAAAGTACCAATA
1 AACTTTGATTCTAT-CAAAAGT-GGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * *** * * * * * *
2396393 TCGTGTATCCTAAAG-AGAAAACTATGTTCAAGGTGCCTAATCTTGAAAGGAATGGGGAATAGTA
63 TCATGTATCCTAATGAAGAGAA-TGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATTA
* * * * * **
2396457 TGCGTATTC-ATGTTTGTCTTATTTAAGAGACA
126 CGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * ** * *
2396489 AATTTTGATTCAATCAAAAACGGTAGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
*
2396553 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
* *
2396618 GAATCGATGCTTATCTTATTTAAGAGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * ** *
2396647 AACTTTGGTATT-AAGT-AAAA-TAGG-GCAAA-AAAATGATTTCCATGCAAAAGAAAATCATCA
1 AACTTT-G-ATTCTA-TCAAAAGT-GGTG-AAAGAAAA-GCTTTTCTTGCGAAACCAAAGCATCA
* * * * * ** * *
2396707 ATATCATTTATCCTAATGAGGAGAATGTGTTCGTAGTG-CCTAATC-ACAAAATGAATGAAGGTT
60 ATATCATGTATCCTAATGAAGAGAATGTGTT-TTTG-GACCCAATCTTGAAAA-GAATGGAGATT
* * * * * * *
2396770 AATACTAGAATTCG-TG-TGTGGCTCATTTGAGGCACG
122 ATTACGAGAA-TCGATGCT-TGTCTTATTTAAGGGATG
* * * * *
2396806 AACTTTAACTT-TA-CAAAAATTGGTGAGAAG-AAAGCCTTTCTTGTGAAACTAAAGCATCAATA
1 AACTTTGA-TTCTATC-AAAAGTGGTGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* ** * *** * * * * * *
2396868 TCGTGTATCCTTTTG-AGAAGACTACATTTATGGTGCCTAATCCT-AAAAGGAATGG-GAAATAG
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAA-GAATGGAG-ATTAT
* * * * * **
2396930 TATGGGTATTC-ATGTTTGTCTT-TTTAAGAGACA
124 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * *
2396963 AACTTTGATTTTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGC-AACCCCAAAGCGTCAATGT
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATAT
* * * * * * ** *
2397027 CTTGTATCCTAATGCAGAGAATGTGTTTTTGGATCCAGTCTTTACAAGCTTGGAGATTGTTACGA
64 CATGTATCCTAATGAAGAGAATGTGTTTTTGGACCCAATCTTGAAAAGAATGGAGATTATTACGA
** * *
2397092 GAATCGATTTTTGCCTTATTTAAAGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * ** *
2397121 AACTTTGATAT-TAAGT-AAAA-TAAGGT-AGAGAATAGATTTCCATACAAAAGAAAATCATCAA
1 AACTTTGAT-TCT-A-TCAAAAGT--GGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * * * ** * *
2397182 TATCATTTATCCTAATGAGGGGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCA
61 TATCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTA
* * * * ** *
2397245 --ACGCTAGAATTC-ATGTTTGGCTCATTTGAGTTACG
123 TTACG--AGAA-TCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * * *
2397280 AACTTAGACTT-T-GCAAAAACTGGTGGGAA-AAATGCCTTTCCTGCGAAACCAAAGTACCAATA
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * ** * * * * * *
2397342 TCGTGTATCCTAATG-AGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAAGGGGGAATAGTA
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATTA
* * * * * **
2397406 TGACTATTC-ATGTTTGTCTTATTTAAGAGACA
126 CGA-GAATCGATGCTTGTCTTATTTAAGGGATG
** * * * * * *
2397438 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG-ATCGAGAGAATAAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
2397502 ATGCATCCCAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
**
2397567 GAATCGATGCTTGTCCAATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * ** *
2397596 AACTTTGATTTTAAGGAAAA-TAGG-GCAAAGAAAAGATTTTCATG-GAAAAGAAAATCATCAAT
1 AACTTTGATTCT-ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCG-AAACCAAAGCATCAAT
* * ** * * ** * *
2397658 ATCATTTATCCTAAAGTGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGTATGAAGATCT-
62 ATCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGAT-TA
* ** * * **
2397720 TTACTAGAATCCG-TTTTTGTCTCATTTAAGGTACA
123 TTACGAGAAT-CGATGCTTGTCTTATTTAAGGGATG
* * * * *
2397755 AACTTAGACTT-TA-CAAAAGTTCGTGGGAAG-AAAGCCTTTCTTGCGAAAGCAAAGC-TCTAAT
1 AACTTTGA-TTCTATCAAAAG-TGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC-AAT
* * * ** * * * * *
2397816 ATCGTGTATCCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGT
62 ATCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATT
* * * * * **
2397880 ATGGGTATTC-ATGTTTGTCTTATTTAAGAGACA
125 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
2397913 AACTTTGATTCTATCAAAAATGGTGGAAA-AAAAACATTTCTTGTGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
2397977 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAATAATTGAGATTGTTACAA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2398042 GAATTGATGCTTGTCTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * ** **
2398071 AACTTTGATTTTAAAT-AAAA-TAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAAT
1 AACTTTGATTCT--ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * * * ** * *
2398133 ATCATATATCTTAACG-AGAAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCA
62 ATCATGTATCCTAATGAAG-AGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTA
* * * *** * * * * *
2398195 ATACTAGAATCCACATTTGGCTCATTTGAGGTACG
123 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2398230 AAGTTAGACTT-TA-CAAAAATTGTTAGGAA-AAAAGCTTTTCTTGTGAAACCAAAGCACCAATT
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * ** * * * * *
2398292 TCATGTATCCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAATAGTA
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATTA
* * * * * **
2398356 TGGGTATTC-ATGTTTGTCTTATTTAAGAGACA
126 CGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * ** * *
2398388 AACTTTGTTTCTATCAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCCACCCCAAAGAATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
2398452 ATGTATCCTAAAGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
2398517 GAATCGATGCTTGTCCTT-TTTAAGGGATG
129 GAATCGATGCTTGT-CTTATTTAAGGGATG
* ** * * * * ** **
2398546 AACTTTGATTTTAAGGAAAA-TAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAATA
1 AACTTTGATTCT-ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * ** * * *
2398609 TCATATATCTTAACGAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCAAT
63 TCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTATT
* * *** * * * * *
2398672 ACTAGAATCCACATTTGGCTCATTTGAGGTACG
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * * *
2398705 AAGTTAGACTT-TA-CAAAAATTGTTGGGAA-AAAAGCTTTTCTTGTGAAACCAAAACACCAATT
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * *
2398767 TCATGTATCCTAATG-AGAAGACTATGTTTAAGTTGG--CTAATCATGAAAAGAATGGGGAATAG
63 TCATGTATCCTAATGAAG-AGAATGTGTTT---TTGGACCCAATCTTGAAAAGAATGGAGATTAT
* * * * **
2398829 TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA
124 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * * * *
2398863 AACTTTGTTTCTATCAAAA-CGGTGGAAAGAAAAGCTTTTCTTGC-AACCCCAAAGAATCAATGT
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATAT
* * * *
2398926 CATGTATCCTAAAGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATG
64 CATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACG
2398991 AGAATCGATGCTTGTCTTATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * * ** **
2399021 AACTTTGATTTTAAGGAAAA-TAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAATA
1 AACTTTGATTCT-ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * ** * *
2399084 TCATATATCTTAACGAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATTAAT
63 TCATGTATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAAA-GAATGGAGATTATT
* * *** * * * * *
2399147 ACTAGAATCCACATTTGGCTCATTTGAGGTACG
125 ACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2399180 AAGTTAGACTT-TA-CAAAAATTGTTGGGAA-AAAAGCTTTTCTTGTGAAACCAAAGCACCAATT
1 AACTTTGA-TTCTATC-AAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * *
2399242 TCATGTATCCTAATG-AGAAGACTATGTTTAAGTTGG--CTAATCATGAAAAGAATGGGGAATAG
63 TCATGTATCCTAATGAAG-AGAATGTGTTT---TTGGACCCAATCTTGAAAAGAATGGAGATTAT
* * * * * **
2399304 CATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA
124 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* ** * *
2399338 AACTTT-ATTTCTATCAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGAATCAATGT
1 AACTTTGA-TTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * *
2399401 CATGTATCCTAAAGAAGAGAATGTGATTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATG
64 CATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACG
2399466 AGAATCGATGCTTGTCTTATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * ** * *
2399496 AACTTTGATTTTAAAT-AAAA-TAGG-GCAAAAAAAAGATTTCCATGCAAAAGAAAATCATTAAT
1 AACTTTGATTCT--ATCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT
* * * * * * ** * * *
2399558 ATCATTTATCTTAATGAGGAGAATGTATTTATATTG-CCTAATC-AAAAAATGAATGAAGATCAA
62 ATCATGTATCCTAATGAAGAGAATGTGTTT-T-TGGACCCAATCTTGAAAA-GAATGGAGATTAT
* * * * * * * * * *
2399621 CACTAGAATCCACGTTTGGCTCATTTGAGGTACG
124 TACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * * *
2399655 AACTTAGTTTTTA-CAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * ** * * * * *
2399718 ATGCATCCTAATG-AGAAGACTTTGTTTAAGGTTCCTAATCTTGAAAAGAATGGGGAATAGTT-T
65 ATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTA-TTAC
* * **
2399781 GAGTATTCG-TGTTTGTCTTATTT-AGGAGACA
127 GAG-AATCGATGCTTGTCTTATTTAAGG-GATG
* * * * * * * *
2399812 AACTTTGATTCTATAAAAAATGGTAGAAAGAAAAACATTTCTTGTGACACAAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * * **
2399877 TTGTATCCTAATTAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGGAGATTGCTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
*
2399942 GAATCGATGCTTGTTTTATTTAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
** * * * ** * * **
2399971 AACTTTGATAT-TAAGT-AAAA-TAGG-GCAAAGAAAAGAATTCCATGCAAAAGAAAATCACCGG
1 AACTTTGAT-TCT-A-TCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* * * **
2400032 TATCATTTATCCTAATGAATGATCATTTATCCTAAGAATGTGTTTATAGTG-CCTAAT-TAAAAA
61 TATCATGTATCCTAATGAA-G-------------AGAATGTGTTT-TTG-GACCCAATCT-TGAA
* * * ** * * * *
2400095 AATAAATGAAGATCATTATTAGAATCCATGTTTG-CTTCATTT-GGGGCACG
109 AA-GAATGGAGATTATTACGAGAATCGATGCTTGTCTT-ATTTAAGGG-ATG
* * * * * ** *
2400145 GACTTAGCCTT-TA-CAAAAAT-TTGAGGGATGAAAGCTTTTCTTGCGAAACCAAAGCACCAATA
1 AACTTTG-ATTCTATCAAAAGTGGTGAAAGA--AAAGCTTTTCTTGCGAAACCAAAGCATCAATA
* * * * ** * ** * * *
2400207 TCGTGTATCCTAAAG-AGAAGACTATGTTTAAGGTGCATAATCTTGAAAAGAATGGGGAATAGTA
63 TCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTATTA
* * ** * *** **
2400271 TGGGTGTTC-ATGTTTGTCTTATTTAAAATACA
126 CGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * *
2400303 AACTTTGCTTCTATAAAAAACGGTGCAAA-AAAA-CTTTTCTTGCGACACTAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* ** * *
2400366 ATGTATCCTAATGATGAGAATGTGTTTTTTTATCCCAATCTTGAAAAGGATGGAGATTGTTACGA
65 ATGTATCCTAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACGA
* *
2400431 GAATCGATGCTTGCCTTATTCAAGGGATG
129 GAATCGATGCTTGTCTTATTTAAGGGATG
** * ** * * * * * ** ** * *
2400460 AACAGTGATTTTAAGGAAAA-TAAGG-CAGAGAAAAGATCTCCACGC-AAAAGAGAATCATCCAT
1 AACTTTGATTCT-ATCAAAAGT--GGTGAAAGAAAAGCTTTTCTTGCGAAACCA-AAGCATCAAT
* * * ** *** * *
2400522 ATCACT-AATCGTAATGAGGAGAATGTGTTTATAAT-G-CGTAATCACAAAAAG-ATGAAGATCA
62 ATCA-TGTATCCTAATGAAGAGAATGTGTTT-T--TGGACCCAATCTTGAAAAGAATGGAGATTA
* * * * * * * * **
2400583 TTGCTAGAGTCTATGTTTGTCTCATTTGAGGCACA
123 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * ** * * *
2400618 AACTTAGACAT-TA-CAAAAATTAGTGGCAAA-AAACCCTTTCTTGTTGCAAAACCAAAGCACCA
1 AACTTTGA-TTCTATC-AAAAGTGGT-G-AAAGAAAAGC-TT-TTCTTGCGAAACCAAAGCATCA
* * * ** * * * *
2400680 ATATCGTGTATCCTAATG-AGAAGACTTTGTTTACGGTGCCTAATCTTGAAAAGAATGGGGAATA
60 ATATCATGTATCCTAATGAAG-AGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGATTA
* * * * * * **
2400744 GTATGAGTATTC-ATGTTTGTCTTTTTTAAGAGACA
123 TTACGAG-AATCGATGCTTGTCTTATTTAAGGGATG
* * *
2400779 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGT-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
* * **
2400844 ATGTA-CCGTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGTAAAGAATGGAGATTGTTGTG
65 ATGTATCC-TAATGAAGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACG
2400908 AGAATCGATGCTTGTCTTATTTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
* * * ** *** *
2400938 AACTTTGATAT-TAAGT-AAAA-TAGG-GCAAAGAAAAGATTTCCATGC-AAAAGAAAATTTCAC
1 AACTTTGAT-TCT-A-TCAAAAGT-GGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAA
* ** * * ** ** * * * *
2400998 TATCAT-TAATCTTTTTGAGGAAAATGTGTTTATTGTG-CTTAATC-ACAAATTGAGTGAAGACT
61 TATCATGT-ATCCTAATGAAGAGAATGTGTTT-TTG-GACCCAATCTTGAAA-AGAATGGAGATT
* ** * * * * * **
2401060 AGTATTAGAATCCATGTTTGGCTCATTTAAGGTACA
122 ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
2401096 AACTTAGACTT-TA-CAAAAGTTGGTTG--GGAAGAAGCTTTTTTTTGCGAAACCAAAGCACCAA
1 AACTTTGA-TTCTATCAAAAG-TGG-TGAAAGAA-AAGC-TTTTCTTGCGAAACCAAAGCATCAA
* * * ** * * *
2401157 TATC-TGCATCCTAATG-AGAAGACTATG-TTTAAGATGTCTAATCTTAAAAAGAATATGGA-A-
61 TATCATGTATCCTAATGAAG-AGAATGTGTTTTTGGA--CCCAATCTTGAAAAG-A-ATGGAGAT
* * * ** * * * **
2401217 TAGTATGAGTATTAAAGTTTGTCTTATTTAAGAGACA
121 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
*** * * * *
2401254 AACTTTGATTCTATCAAAAACCGTGAAAAGAAAAGCTTTTCTTACGACACCAAATCATCAATGTC
1 AACTTTGATTCTATCAAAAGTGGTG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC
**
2401319 ATGTATCCTAAT-ATAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGGTACG
65 ATGTATCCTAATGA-AGAGAATGTGTTTTTGGA-CCCAATCTTGAAAAGAATGGAGATTATTACG
* *
2401383 AGAATCAATACTTGTCTTA-TTAAGGGATG
128 AGAATCGATGCTTGTCTTATTTAAGGGATG
2401412 AACTTTGAT
1 AACTTTGAT
2401421 ATTATGTAAA
Statistics
Matches: 10200, Mismatches: 3434, Indels: 1927
0.66 0.22 0.12
Matches are distributed among these distances:
152 12 0.00
153 147 0.01
154 31 0.00
155 86 0.01
156 278 0.03
157 1004 0.10
158 3833 0.38
159 3942 0.39
160 490 0.05
161 108 0.01
162 32 0.00
163 7 0.00
164 3 0.00
166 1 0.00
168 2 0.00
169 2 0.00
170 3 0.00
171 6 0.00
172 12 0.00
173 63 0.01
174 41 0.00
175 91 0.01
176 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (157 bp):
AACTTTGATTCTATCAAAAGTGGTGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCA
TGTATCCTAATGAAGAGAATGTGTTTTTGGACCCAATCTTGAAAAGAATGGAGATTATTACGAGA
ATCGATGCTTGTCTTATTTAAGGGATG
Found at i:2389522 original size:334 final size:335
Alignment explanation
Indices: 2388909--2389566 Score: 982
Period size: 334 Copynumber: 2.0 Consensus size: 335
2388899 TTGGTGAGTA
*
2388909 GAAAGCCTTTCTTGAGAAACCAAAGCATCCATATCGTGTATCCTTAAGAGAAGGCTGCATTTATG
1 GAAAGCCTTTCTTGAGAAACCAAAGCATCCATATCGTGTATCCTTAAGAGAAGGCTACATTTATG
* * * * *
2388974 GTGCCTAATCCTGAAAAGAACGGGACATGGTGTGATTTTTCATGTTTGTCTTATTTAAGAGATAA
66 CTACCTAATCCTGAAAAGAACGGGACATGGTGTGAGTTTTCACGTTTGTCTTATTTAAGAGACAA
* ** *
2389039 ACTTTGATTCTTTCAAAAACTGTGGAAAGAAAAGCTTTTTGTACAACACCAAAGCAACAATGTCT
131 ACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTTGTACAACACCAAAGCAACAATGTCA
* * *
2389104 TGTATCCTAATGAAGAGAATGTGTATTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTGTGAG
196 TGTATCCTAATAAAGAGAATGTGTATTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAG
* * *
2389169 AATCGATGCTTGCCTTATTTAAGAGATGGACTTTGATTTTAAGTAAAAT-AGGGCAAGAAAAGAG
261 AATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATATTAAGTAAAATAAGGCCAAGAAAAGAG
2389233 TGAAAATGGT
326 TGAAAATGGT
* *
2389243 GAAAGCCTTTCTTGAGAAACCAAAGCATCCATATCGTGTATCCTTATGAGAAGGCTACGTTTATG
1 GAAAGCCTTTCTTGAGAAACCAAAGCATCCATATCGTGTATCCTTAAGAGAAGGCTACATTTATG
* *
2389308 CTACCTAATCCTGAAAAGAAAGGGGA-A-GAGTGTGAGTTTTCACGTTTGTCTTATTTTAGAGAC
66 CTACCTAATCCTGAAAAG-AACGGGACATG-GTGTGAGTTTTCACGTTTGTCTTATTTAAGAGAC
* * * * ** *
2389371 AAACTTTTATTCTATCAAAAAAGGTGGAGAGAAAAGCTTTTCT-TGCGACATGAAAGCATCAATG
129 AAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTT-TGTACAACACCAAAGCAACAATG
* *
2389435 TCATGTATCCTAATAAAGAGAATGTTTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAT
193 TCATGTATCCTAATAAAGAGAATGTGTATTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAT
* *
2389500 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAAGGCCAAGAAAA
258 GAGAATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATATTAAGTAAAATAAGGCCAAGAAAA
2389565 GA
323 GA
2389567 TTTCCATGCA
Statistics
Matches: 289, Mismatches: 31, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
333 1 0.00
334 268 0.93
335 20 0.07
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (335 bp):
GAAAGCCTTTCTTGAGAAACCAAAGCATCCATATCGTGTATCCTTAAGAGAAGGCTACATTTATG
CTACCTAATCCTGAAAAGAACGGGACATGGTGTGAGTTTTCACGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTTGTACAACACCAAAGCAACAATGTCA
TGTATCCTAATAAAGAGAATGTGTATTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAG
AATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATATTAAGTAAAATAAGGCCAAGAAAAGAG
TGAAAATGGT
Found at i:2390993 original size:475 final size:474
Alignment explanation
Indices: 2389244--2401485 Score: 15299
Period size: 475 Copynumber: 25.8 Consensus size: 474
2389234 GAAAATGGTG
* * * * *
2389244 AAAGCCTTTCTTGAGAAACCAAAGCATCC-ATATCGTGTATCCTTATGAGAAGGCTACGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
* * * * * * * * *
2389308 CTACCTAATCCTGAAAAGAAAGGGGAAGAGTGTGAGTTTTCACGTTTGTCTTATTTTAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * **
2389373 ACTTTTATTCTATCAAAAAAGGTGGAGAGAAAAGCTTTTCTTGCGACATGAAAGCATCAATGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* *
2389438 TGTATCCTAATAAAGAGAATGTTTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
* *
2389503 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAAGGCCAAGAAAAGAT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGAT
* *
2389568 TTCCATGCAAAAGAAAATCATCAATATC-TTTAATCTTAATGAGTAGAATGTGTTTATTA-TGCC
323 TTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTTTA-TAGTGCC
* * * * *
2389631 TAATCACAAATTGACTGAATATCAATTCTAGAATCCACGTTTGGCTCATTTGAGGCACGAACTTA
386 TAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTA
* * *
2389696 GACTTTAAAAAAATTTGTTGGAAA
451 GACTTTACAAAAATTGGTGGGAAA
* *
2389720 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCATAATGAGAAGACTATGTTTAAGA
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * *
2389785 TGCCTAATCTTGAAAAGAATGTGGAATAGTATGAGTATTCATGTTTGTGTTATTTAAGTGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
2389850 CTTTGATTCTATCAAACACGATGGAAAGAAAAGCTTTTCTTGCGACACGAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * *
2389915 GTATCCTAATGAAGAGAATGTGTTTTTGGGTCCCAATCTTGAAATGCATGGAGATTGTTACGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* ** * *
2389980 ATCGATGTTTCCCTTATTTAGGGGATGAACCTTGATATTAAGTAAAATAGGGCAAAGAAAAGATT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGATT
* *
2390045 TCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-AATTTTGTTTATAGTGCCTA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTA
* * * * * * *
2390109 ATAAAAAAATGAACGAAGATCATTATTAGAATCCATGTTTGCCTCATTTGAGGCACGAGCTTAGA
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
* *
2390174 CTTTACAAAACTTGGTGGGAAG
453 CTTTACAAAAATTGGTGGGAAA
* * *
2390196 AAAGCCTTTCTTGTGAAACCAAAGCACCAATAACGTGTATCCTAATAAGAAGACTATGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * * * * *
2390261 TGCTTATTCTTGAAAA-AATTGGGAGTAGTATGAGTATTCATTTTTGTCTTATTTAATAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* *
2390325 CTTTGATTCTATCAAAAACGATAGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * *
2390389 GTATCCTAATGAAGGGAAGGTGCTTTT-GATTCCCAATCTTGAAAAGAATGGAGATTGTTACTAG
196 GTATCCTAATGAAGAGAATGTGTTTTTGGA-TCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
* *
2390453 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGAAAATAGGGCAAAGAAAAGATT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAGTAAAATAGGGCAAAGAAAAGATT
* * * * * * *
2390518 TCAATGCAAAAGAAATTCATCAACATCATTTGTCCTAATGAGGATAATGTATTTATTGTGCCTAA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * *
2390583 TCAGAAAATGAATGAATATCAATACTATAATCCACGTTTGGCTCATTTGAGGCACAAACTTAGAC
389 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGAC
* ** **
2390648 TTTAAAAAAATTTATTTGAAA
454 TTTACAAAAATTGGTGGGAAA
* * *
2390669 AAAGTCTTAT-TTGCCAAACCAAAGCACCAATATCGTGTATACTAATGAGAAGACTATGTTTAAG
1 AAAGCCTT-TCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
* * *
2390733 ATGCCTAATCTTGAAAAGAATGCGGAATAGTATGAGCATTCATGTTTGTCTTATTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
2390798 ACTTTGATTCTATCGAAAACGGTGGAAAAAAAAGCTTTTCTTGGGACACTAAAGCATCATTGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* ** * *
2390863 TGTATCCTAATGAAGGGAATGTGTTTTTAAATCCTAATCTTGAAAAGAATGGCGATTGTTAGTAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAG-AG
* * * *
2390928 AGTTGATGCTTGTCTTATTTAAAGGATGAACTTTAATTTCAAG-AAAATAGGGCAAAGAAAAGAT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT-AAGTAAAATAGGGCAAAGAAAAGAT
* * * * * * * *
2390992 TTCAATGCAAAAGAAAATCAGCAACATC-TTTGATTCTATTGAGGATAATGTATTTATTGTGCCT
323 TTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * *
2391056 AACCACAATATGAATGAATATCAATACTAGAATACATGTTTGGCTCATTTGAGGCACGAACTTAG
387 AATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAG
* *
2391121 ACTTTACGAAAATTGGTGGGAAG
452 ACTTTACAAAAATTGGTGGGAAA
* * * *
2391144 AAAGCCTTTCTTGCAAAACCAAAGCACCAATATCATGTATCCTAATGAGAAGAATACGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* *
2391209 TG-CTAATCTTGAAAAGAATGGGGAATAGTATTAGTATTCATCTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
2391273 CTTTAATTCTATCAAAAACGGTAGAAAGACAAGCTTTTCTTGCGACACAAAAGCATCAATGTCTT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* *
2391338 GTATCCTAATGAAGAAAATGTGTTTTTGGATCCCAATCTTGTAAAGAATGGAGATTGTTAGGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* * *
2391403 ATCGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGATT
* * * * *
2391468 TTCATGCAAAAAAAAATCATCAATAAC-TTGAATCTTAATGAGGAGAATGTGTTTATAGTGCCTA
324 TCCATGCAAAAGAAAATCATCAATATCATT-TATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* *
2391532 ATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTAAGGCACGAACTTAGA
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
* * ***
2391597 CTTTACGAAAATTAGTGGGGTG
453 CTTTACAAAAATTGGTGGGAAA
* * * * * * *
2391619 AAAGTCTTTCTTGAGAAACCAAAGCATCC-ATATCATGTATCC-ATATAAGAAGGCTACGTTTAT
1 AAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCGTGTATCCTA-ATGAGAAGACTATGTTTAA
* * * * * * *
2391682 GGTGCCTAATCCTAAAAAGAAAGGGAAATAGTATGAGTTTTCAAGTTTGTCTTATTTAAGAAACA
64 GGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
2391747 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACGAAAGCCTCAATGTC
129 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * *
2391812 ATGTGT-C--ATTAAAAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAAATTGTTACGA
194 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GA
*
2391874 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATA-GGCAAAGACAAGA
258 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGA
* * *
2391938 TTTCCCTGCAAAAAAAAAAAACATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
322 TTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
2392003 CTAATCACAAAATGAATGAAGATCAACACTAGAATCAATGTTTGGCTCATTTAAGGCACGAACTT
385 CTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTT
* **
2392068 AGACTTT-CGAAAATTGGTGGGATG
450 AGACTTTACAAAAATTGGTGGGAAA
* * * * * * * * *
2392092 GAAGCTTTTCTTGAGAAACCAAAGCATCC-GTATCATGCATCCTTAA-GAGAAGGCTACGTTTAT
1 AAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCGTGTATCC-TAATGAGAAGACTATGTTTAA
* * * * * * *
2392155 GGTGCCTAATCTCGAAAAGAAAGGGAAATGGTGTGAGTTTTCATGTTTGTCTTATTTAAGAAACA
64 GGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * * *
2392220 AATTTTGATTTTATCAAAAATGGTGGAAAAAAAAACTTTTCTTACGACACCAAAGCATCAATGTC
129 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * *
2392285 TTGTATCCTAATGAAAAGAATGTGTTTTTGGATCCCAATCTTGAAAATG-ATGGAGATTGTTGCG
194 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAA-GAATGGAGATTGTT-AG
* * * * * * *
2392349 AGAATCGATGCTTGCCTGATTTAAGGGATGAACTTTAATTTTAAGGAAAA-AAGGCCAGGAAAAG
257 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAG
* * * * * * *
2392413 ATTTTCAAGCAAAAGAAAATCATCAATATCATTAATCTTAATGAAGAGAACGCGTTTATAGTGCC
321 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * *
2392478 TAATCACAAAAAGAATGAACATCAATATTAGAATCCACGTTTGGCTCATTTGAGGCACAAACTTA
386 TAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTA
* * **
2392543 GACTTTACGAAAATTAGTAGGG-TG
451 GACTTTACAAAAATTGGT-GGGAAA
* * * * * * *
2392567 AAAGCCGTTCTTGAGAAACCAAAGCATCC-ATATCATGTATCCTTATGAGAAGGCTACGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
* * * ** * * **
2392631 CTGTCTAATCCTGAAAAGAAAAGGGAATAGTGTGAGTTTTCAACTTTGTCTTATTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
2392696 ACGTTAATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACACGAAGGCATCAATGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * *
2392761 TGTATCCTAATGAAGGGAATGCGTTATTT-AACCCCAATCTTGAAAAGAATGGAGATTGATACGA
195 TGTATCCTAATGAAGAGAATGTGTT-TTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GA
* * *
2392825 GAATCGATGCATGCCTTATTTAAGGGATGAACTTTGAATTTAAGAAAAATAGGGCAAAGAAAAGA
258 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG-ATTTAAGTAAAATAGGGCAAAGAAAAGA
* * * * * *
2392890 TTTTCATACAAAAGAAAATCATCAATAACATTAATCTTAATGGGGAGAATGTGTTTATAGTGCCT
322 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2392955 AATCACAAAATGAATGAAGATCAATACTAGAATCCACGTTTGGCTCATTTGAGGTATGAACTTAG
387 AATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAG
*
2393020 ACTTT-CAAAAATTGGTGGGATA
452 ACTTTACAAAAATTGGTGGGAAA
* * * * *** *
2393042 AAAGCCTTTCCTGAGAAACCAAAGCATCC-ATATCATGTATCCTTAA-GAGAAGGCTGCATTTAT
1 AAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCGTGTATCC-TAATGAGAAGACTATGTTTAA
* * * * * * * * *
2393105 GGAGCCTAATCCTGAAAAGAAAGGGAAATGGTGTGAGTTTTCATGTTTGCCTTATTTAAGAGAGA
64 GGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* ** **
2393170 AACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCAATTCTTATGACACCAAAGCATCAATGTC
129 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* *
2393235 TTGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAATG-ATGGAGATTGTTGCG
194 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAA-GAATGGAGATTGTT-AG
* * * *
2393299 AGAATCGATGCTTGCCTGATTT-----ATGAACTTTGATTTTAAAG-AAAAAAGGTG--AGGAAA
257 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTT-AAGTAAAATAGG-GCAAAGAAA
* * * * * *
2393356 AGATTTTCAAGCAAAAGAAAATCATCAATATCATTAATCTTAATCAGGAGAACGTGTTTATAGTG
319 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
2393421 CCTAATCACAAAAT-AAGTGAAGTTCAATACTAGAATCCACGTTTGGCTCATTTGAGGCACGAAC
384 CCTAATCACAAAATGAA-TGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
* **
2393485 TTAGACTTTACGAAAATTGGTGAGG-TG
448 TTAGACTTTACAAAAATTGGTG-GGAAA
* * * * * *
2393512 AAAGCCTTTCTTGAGAAACCAAAGCATCC-ATATCATGTAGCCTTATGAGAAGGCTATGTTTATG
1 AAAGCCTTTCTTGCGAAACCAAAGCA-CCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
* * * * * *
2393576 GTGCCTAATCCTGAAAAGAAAGGGGAATAGTGTGAGTTTTCAAGTTTGTCTTATCTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
2393641 ACTTTGATTTTATTAAAAATGGTGGGAAGAAAAGCTTTTCTTGTGACACAAAAGCATCAATGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * *
2393706 TGTATCCTAATGAAGGGATTGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTTTTACGAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
* *
2393771 AATCGATGCTTATCTTTTTTAAGGGATGAACTTTGA--TAAGTAAAATAGGGCAAA-AAATAGAT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAGTAAAATAGGGCAAAGAAA-AGAT
* * * *
2393833 TTCCATACAAAAG-AAA--ATCAATATCATTTATCCTAATTAGGAGAATATGTTTATAGTGCCAA
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
2393895 ATCAAAAAATGAATGAATATCAATACTAGAATCCATGTTTGGCTTATTTGAGGCACGAACTTAGA
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
* **
2393960 CTTTACGAAAATTGAAGGGAAA
453 CTTTACAAAAATTGGTGGGAAA
** * * * * * *
2393982 AAAGCCTTTCTTGAAAAACCAATGCATCAATCTCATGTATCCCT-ATGAGAAAACTATGTTTACG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTAT-CCTAATGAGAAGACTATGTTTAAG
* * * * ** * *
2394046 GTGCCTACTCCTGAAAAGAATGGAGAATAATACAAGTATTCTTGTTTGTCTGATTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
2394111 ACTTTGATTCTATC-AAAACTGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATTTC
130 ACTTTGATTCTATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* *
2394175 AAGTATCCTAATGAAGAGAATGTGTTTTTGAATCCCAATCTTGAAAAGAATGGAGATTGTTACGA
194 ATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GA
* * * *
2394240 GAATCAAAGTTTTTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGA
258 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGA
* * * * * * *
2394305 TTTTCATGCAAAAAAAAATCGTCAATATCATTAATCTTTATGAGGAGAATGTGTTTATAGTACCT
322 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * *
2394370 AATCACAAATTGAGTGAAAGATCAATACCAGAATCCATGTTTGGCTTATTTGAGGTACGAACTTA
387 AATCACAAAATGAATG-AAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTA
*
2394435 GACTTTACAAAAATTGGTTGGAAA
451 GACTTTACAAAAATTGGTGGGAAA
* * * * * *
2394459 AAAGCCTTTCCTACTAAACCAAAGCACCAAAATCATGTATCCTAATGAGAAGACTATGTTTAAGA
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * * * * *
2394524 TGCCTAATCTTAAAAAGAATGCGAAATAGTATGAGTATTCATGTTCGCCTTTTTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
2394589 CTCTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* *
2394654 GTATTCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* *
2394719 ATCGATACTTGTCTCT-TTTAAGGGATGCACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAT
260 ATCGATGCTTGTCT-TATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGAT
** * *
2394783 TTCCACACAAAATAAAATCATCAATATCATTTATCCTAATAAGG-GAAATGTGTTTATAGTGCCT
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG-AATGTGTTTATAGTGCCT
* * * * * * * * *
2394847 AATCAAAAAATGAGTGAAGATCATTATTAGAGTCCTTGTTTGCCTTATTTGAAGCACGAACTTAG
387 AATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAG
* *
2394912 ACTTTACAAAAATTGGAGGGAAG
452 ACTTTACAAAAATTGGTGGGAAA
* * * * *
2394935 AAAGCCTTTCTTGCAAAACCAAAGCACCAATATTGTGTATCTTAGTGAGAAGACTACGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * *
2395000 TGCCTAATCTTGAAAAGAATAGGGAATAGTATGAGTATTTATGTTTGTCTTATTTAAGAAACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
2395065 CTTTGATTCTATAAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAC
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * ** * **
2395129 GCATCCTAATGAAGAGGATGTGTTTTTGGATCCCAATCTTGAAAAGGTTGTAGATTGTTTCTAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG-TTAGAGA
* * * *
2395194 ATCGGTGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGATT
* *
2395259 TCCATGCAAAAGAAAATCATCAATATCAATTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * ** * * ** * *
2395324 TCACAAAATGAAATAAACATCGTTTCTGGAATCCATGTTTATCTCATTTAAGACACGAACTTAGA
389 TCACAAAATG-AATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
* * * *
2395389 CTTTACAAAAGTTAGTGGGTAG
453 CTTTACAAAAATTGGTGGGAAA
* ** * *
2395411 AAAGCCTTTCTTGCGAAAGCAAAGCAGTAATATCGTGTATCTTAATGAGAAGACTTTG-TTAATG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAA-G
*
2395475 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTGTTCATGTTTGTCTTATTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
2395540 ACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * *
2395605 TGTATCCTAATGAAGGGAATGTGTTTTTAGATCCCAATCTTGAAAAGAACGGAGATTGTTACTAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
* * * * *
2395670 AATCGATGCTTGTCTTATTTAGGGGATGAACGTTGATTTTAAGGAAAATAAGGAAAAGAAAAGAT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGAT
* * * * ** *
2395735 TTCAATGCAAAATAAAATCATTAATATCATTAATGTTAATGAGGAGATTGT-TCTTATAGTGCCT
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT-TTATAGTGCCT
*
2395799 AATCACAAAATGAATGAAGATCAATACTAGAATCCAGGTTTGGCTCATTTGAGGCACGAACTTAG
387 AATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAG
* ** *
2395864 ACTTTTCAAAAATTAATGGGAAG
452 ACTTTACAAAAATTGGTGGGAAA
* * ** * * * *
2395887 AAAGCTTTTCTTGAGAAACCAAAGCGTCAATACCGTGTATCCTTATGAGAAGACTATATTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * * *
2395952 TGCCTAAT-ATGAAAAAGAATGGGGAATACTAAGAGTATTCATGTTTGTCTTATTTAAGAGATAA
66 TGCCTAATCTTG-AAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
2396016 ACTTTGATTCTGTCAAAGACGGTGGTAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
2396081 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTAAAAAGGATGGAGTTTGTTATGAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
* * * * *
2396146 AATGGACGCTTG-CATTATTTAAGGGATGAACATTGATTTTAAGAAAAATAGAGCAAAGAAAAGA
259 AATCGATGCTTGTC-TTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGA
* * * * * *
2396210 TTTCCAAGC-AAAGAAAATCATCAATATCGTTAATCTTAATGAAGAGAATGTGTTTACAGTGCCT
322 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * ** * *
2396274 AATCACAAAATGAATAAAGATCAATTCTAGAA-CCATGTTTCACTCATTGGAGGTACGAACTTAG
387 AATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAG
* *
2396338 ACCTTACAAAAATAGGTGGGAAA
452 ACTTTACAAAAATTGGTGGGAAA
* * * * *
2396361 ATAGCCTTTCTTGCGAAACCAAAGTACCAATATCGTGTATCCTAAAGAGAAAACTATGTTCAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* *
2396426 TGCCTAATCTTGAAAGGAATGGGGAATAGTATGCGTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
2396491 TTTTGATTCAATCAAAAACGGTAGAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
2396555 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* * *
2396620 ATCGATGCTTATCTTATTTAAGAGATGAACTTTGGTATTAAGTAAAATAGGGCAAA-AAAATGAT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAA-GAT
**
2396684 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCGTAGTGCCTA
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
2396749 ATCACAAAATGAATGAAGGTTAATACTAGAATTCGTGTGTGGCTCATTTGAGGCACGAACTTTA-
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC-TTAG
* *
2396813 ACTTTACAAAAATTGGTGAGAAG
452 ACTTTACAAAAATTGGTGGGAAA
* * * ** ** *
2396836 AAAGCCTTTCTTGTGAAACTAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTACATTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * *
2396901 TGCCTAATCCT-AAAAGGAATGGGAAATAGTATGGGTATTCATGTTTGTCTT-TTTAAGAGACAA
66 TGCCTAATCTTGAAAA-GAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
2396964 ACTTTGATTTTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCGTCAATGTCT
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * **
2397029 TGTATCCTAATGCAGAGAATGTGTTTTTGGAT-CCAGTCTTTACAAGCTTGGAGATTGTTACGAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
** * * * * * *
2397093 AATCGATTTTTGCCTTATTTAAAGGATGAACTTTGATATTAAGTAAAATAAGGTAGAGAATAGAT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGAT
* *
2397158 TTCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTA
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
** * **
2397223 ATCACAAAATGAATGAAGATCAACGCTAGAATTCATGTTTGGCTCATTTGAGTTACGAACTTAGA
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
* *
2397288 CTTTGCAAAAACTGGTGGGAAA
453 CTTTACAAAAATTGGTGGGAAA
* * * *
2397310 AATGCCTTTCCTGCGAAACCAAAGTACCAATATCGTGTATCCTAATGAGAAGACTATGTTTACGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* *
2397375 TGCCTAATCTTGAAAAGAAGGGGGAATAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
2397440 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-TCGAGAGAATAAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * *
2397504 GCATCCCAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
** *
2397569 ATCGATGCTTGTCCAATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGATT
* * * *
2397634 TTCATGGAAAAGAAAATCATCAATATCATTTATCCTAAAGTGGAGAATGTGTTTATAGTGCCTAA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* ** * * * * * *
2397699 TCACAAAATGTATGAAGATCTTTACTAGAATCCGTTTTTGTCTCATTTAAGGTACAAACTTAGAC
389 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGAC
* * *
2397764 TTTACAAAAGTTCGTGGGAAG
454 TTTACAAAAATTGGTGGGAAA
* * *
2397785 AAAGCCTTTCTTGCGAAAGCAAAGCTCTAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
*
2397850 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
2397915 CTTTGATTCTATCAAAAATGGTGGAAA-AAAAACATTTCTTGTGACACCAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * *
2397979 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAATAATTGAGATTGTTACAAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* *
2398044 ATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAATAAAATAGGGCAAAGAAAAGATT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGATT
* * * * *
2398109 TCCATGCAAAAGAAAATTATCAATATCATATATCTTAACGAGAAGAATGTGTTTATAGTGCCTAA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
** * *
2398174 TCACAAAATGAATGAAGATCAATACTAGAATCCACATTTGGCTCATTTGAGGTACGAAGTTAGAC
389 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGAC
* *
2398239 TTTACAAAAATTGTTAGGAAA
454 TTTACAAAAATTGGTGGGAAA
* * * *
2398260 AAAGCTTTTCTTGTGAAACCAAAGCACCAATTTCATGTATCCTAATGAGAAGACTATGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
*
2398325 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
2398390 CTTTGTTTCTATC-AAAACGGTGGAAAGAAAAGCTTTTCTTGCCACCCCAAAGAATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* *
2398454 GTATCCTAAAGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
*
2398519 ATCGATGCTTGTCCTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
260 ATCGATGCTTGT-CTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGAT
* * * *
2398583 TTCCATGCAAAAGAAAATTATCAATATCATATATCTTAACGAGGAGAATGTGTTTATAGTGCCTA
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
** * *
2398648 ATCACAAAATGAATGAAGATCAATACTAGAATCCACATTTGGCTCATTTGAGGTACGAAGTTAGA
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
*
2398713 CTTTACAAAAATTGTTGGGAAA
453 CTTTACAAAAATTGGTGGGAAA
* * * * * *
2398735 AAAGCTTTTCTTGTGAAACCAAAACACCAATTTCATGTATCCTAATGAGAAGACTATGTTTAAGT
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* *
2398800 TGGCTAATCATGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
2398865 CTTTGTTTCTATC-AAAACGGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGAATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* *
2398929 GTATCCTAAAGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
*
2398994 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGATT
* * * *
2399059 TCCATGCAAAAGAAAATTATCAATATCATATATCTTAACGAGGAGAATGTGTTTATAGTGCCTAA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* ** * *
2399124 TCACAAAATGAATGAAGATTAATACTAGAATCCACATTTGGCTCATTTGAGGTACGAAGTTAGAC
389 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGAC
*
2399189 TTTACAAAAATTGTTGGGAAA
454 TTTACAAAAATTGGTGGGAAA
* * * * *
2399210 AAAGCTTTTCTTGTGAAACCAAAGCACCAATTTCATGTATCCTAATGAGAAGACTATGTTTAAGT
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * *
2399275 TGGCTAATCATGAAAAGAATGGGGAATAGCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* *
2399340 CTTT-ATTTCTATC-AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGAATCAATGTCA
131 CTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
2399403 TGTATCCTAAAGAAGAGAATGTGATTTTGGATCCCAATCTTGAAAAGGATGGAGATTGTTATGAG
195 TGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAG
* *
2399468 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAATAAAATAGGGCAAAAAAAAGAT
259 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGAT
* * * *
2399533 TTCCATGCAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTATTTATATTGCCTA
323 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
2399598 ATCAAAAAATGAATGAAGATCAACACTAGAATCCACGTTTGGCTCATTTGAGGTACGAACTTAGT
388 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGA
*
2399663 TTTTAC-AAAATTGGTGGGAAA
453 CTTTACAAAAATTGGTGGGAAA
* * * *
2399684 AAAGCCTTTCTTGCGAAACCAAAGCACCAATGTCATGCATCCTAATGAGAAGACTTTGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * * *
2399749 TTCCTAATCTTGAAAAGAATGGGGAATAGTTTGAGTATTCGTGTTTGTCTTATTTAGGAGACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * * * * *
2399814 CTTTGATTCTATAAAAAATGGTAGAAAGAAAAACATTTCTTGTGACACAAAAGCATCAATGTCTT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * *
2399879 GTATCCTAATTAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGGAGATTGCTACGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* *
2399944 ATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAAT
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGATT
* ** *
2400009 TCCATGCAAAAGAAAATCACCGGTATCATTTATCCTAATGAATGATCATTTATCCTAAGAATGTG
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-A-G------------GAGAATGTG
* * * * *
2400074 TTTATAGTGCCTAATTAAAAAAATAAATGAAGATCATTATTAGAATCCATGTTT-GCTTCATTTG
375 TTTATAGTGCCTAA-TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGC-TCATTTG
* * * * * **
2400138 GGGCACGGACTTAGCCTTTACAAAAATTTGAGGGATG
438 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* *
2400175 AAAGCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAAAGAGAAGACTATGTTTAAGG
1 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
* * * * *
2400240 TGCATAATCTTGAAAAGAATGGGGAATAGTATGGGTGTTCATGTTTGTCTTATTTAAAATACAAA
66 TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
2400305 CTTTGCTTCTATAAAAAACGGTGCAAA-AAAA-CTTTTCTTGCGACACTAAAGCATCAATGTCAT
131 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* ** *
2400368 GTATCCTAATGATGAGAATGTGTTTTTTTATCCCAATCTTGAAAAGGATGGAGATTGTTACGAGA
196 GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GAGA
* * ** * * * *
2400433 ATCGATGCTTGCCTTATTCAAGGGATGAACAGTGATTTTAAGGAAAATAAGGCAGAGAAAAGATC
260 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGTAAAATAGGGCAAAGAAAAGATT
* * * * * * * *
2400498 TCCACGCAAAAGAGAATCATCCATATCACTAATCGTAATGAGGAGAATGTGTTTATAATGCGTAA
324 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * * * *
2400563 TCACAAAAAG-ATGAAGATCATTGCTAGAGTCTATGTTTGTCTCATTTGAGGCACAAACTTAGAC
389 TCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGAC
* * *
2400627 ATTACAAAAATTAGTGGCAAA
454 TTTACAAAAATTGGTGGGAAA
* * *
2400648 AAACCCTTTCTTGTTGCAAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTTTGTTTA
1 AAAGCCTTTC---TTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTA
* *
2400713 CGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGAC
63 AGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
*
2400778 AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
128 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* *
2400843 CATGTA-CCGTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGTAAAGAATGGAGATTGTTGT
193 CATGTATCC-TAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT-A
2400907 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAA
256 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAA
* * * * ** * *
2400972 GATTTCCATGCAAAAGAAAAT-TTCACTATCATTAATCTTTTTGAGGAAAATGTGTTTATTGTGC
320 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * * *
2401036 TTAATCACAAATTGAGTGAAGA-CTAGTATTAGAATCCATGTTTGGCTCATTTAAGGTACAAACT
385 CTAATCACAAAATGAATGAAGATC-AATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACT
*
2401100 TAGACTTTACAAAAGTTGGTTGGG-AA
449 TAGACTTTACAAAAATTGG-TGGGAAA
* * * *
2401126 GAAGCTTTTTTTTGCGAAACCAAAGCACCAATATC-TGCATCCTAATGAGAAGACTATGTTTAAG
1 AAAGC-CTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
* * * ** * *
2401190 ATGTCTAATCTTAAAAAGAATATGGAATAGTATGAGTATTAAAGTTTGTCTTATTTAAGAGACAA
65 GTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
2401255 ACTTTGATTCTATCAAAAACCGTGAAAAGAAAAGCTTTTCTTACGACACCAAATCATCAATGTCA
130 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
*
2401320 TGTATCCTAAT-ATAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGGTACGA
195 TGTATCCTAATGA-AGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-GA
* * *
2401384 GAATCAATACTTGTCTTA-TTAAGGGATGAACTTTGATATTATGTAAAATAGGGCAAAGAAAAGA
258 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGTAAAATAGGGCAAAGAAAAGA
* * *
2401448 GTTCCATGCAAAATAAAATCATCACTATCATTTATCCT
322 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
2401486 TGTCGCGACG
Statistics
Matches: 10318, Mismatches: 1295, Indels: 307
0.87 0.11 0.03
Matches are distributed among these distances:
468 2 0.00
469 142 0.01
470 632 0.06
471 15 0.00
472 38 0.00
473 769 0.07
474 1518 0.15
475 4083 0.40
476 1812 0.18
477 676 0.07
478 220 0.02
479 6 0.00
487 1 0.00
488 1 0.00
489 193 0.02
490 61 0.01
491 149 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGG
TGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
GTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAGAGAA
TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAGTAAAATAGGGCAAAGAAAAGATTTC
CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
ACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTT
TACAAAAATTGGTGGGAAA
Found at i:2396677 original size:158 final size:155
Alignment explanation
Indices: 2389351--2401446 Score: 3263
Period size: 158 Copynumber: 76.3 Consensus size: 155
2389341 GAGTTTTCAC
* * * * *
2389351 GTTTGTCTTATTTTAGAGACAAACTTTTATTCT-ATCAAAAAAGGTGGAGAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAATA-G-GGA-AAAAAAGCTTTTCTT
* ** * * * * *
2389415 GCGACATGAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTTTTTTTGGAT-CCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTT
*
2389479 GAAAAGAATGGAGATTGTTATGAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * *
2389510 GCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAAGGCCAAGAAAAGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAAT-AGG-GAAAAAAAGCTTTTCTTG
* ** * * * ** *
2389575 CAAAAGAAAATCATCAATATC-TTTAATCTTAATG-AGTAGAATGTGTTTATTATGCCTAATC-A
62 CGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * * * * ** * * *
2389637 CAAATTGACTGAATATCAATT-CTAGAATCCAC
125 GAAA-AGAATGGAGAT-TGTTACGAGAATCGAT
* * * * * * *
2389669 GTTTGGCTCATTTGAG-GCACGAACTTAGACTTTAAAAAAATTTGTTGG-AAAAAAGCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAA-TAG--GGAAAAAAAGCTTTTCTT
* * * * * * *
2389732 GCGAAACCAAAGCACCAATATCGTGTATCATAATG-AGAAGACTATGTTTAAGATGCCTAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * *
2389796 GAAAAGAATGTG-GAATAG-TATGAGTATTC-AT
125 GAAAAGAATG-GAG-ATTGTTACGAG-AATCGAT
* * * * *
2389827 GTTTGTGTTATTTAAGTGACAAACTTTGATTCT-ATCAAACACGATGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAA-A-TAGGGAAA-AAAAGCTTTTCTT
* * * * *
2389891 GCGACACGAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG-GTCCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTG-CCTAATCTT
* *
2389955 GAAATGCATGGAGATTGTTACGAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
** * * * * * * **
2389986 GTTTCCCTTATTTAGGGGATGAACCTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCACG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** * * * * * ***
2390051 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-AATTTTGTTTATAGTGCCTAAT-AAA
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAA-TGTGTTTATGGTGCCTAATCTTG
* * ** ** *
2390114 AAAATGAACGAAGATCATTATTAGAATCCAT
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * * *
2390145 GTTTGCCTCATTTGAG-GCACGAGCTTAGACTTTACA-AAACTTGGTGGGAAGAAAGCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAA-ATAG-GGAAAAAAAGCTTTTCTT
* * * * * * * * *
2390208 GTGAAACCAAAGCACCAATAACGTGTATCCTAAT-AAGAAGACTATGTTTAAGGTGCTTATTCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * *
2390272 GAAAA-AATTGG-GAGTAG-TATGAGTATTC-AT
125 GAAAAGAA-TGGAGA-TTGTTACGAG-AATCGAT
* * * *
2390302 TTTTGTCTTATTTAATAGACAAACTTTGATTCT-ATCAAAA-ACGATAGAAAAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAATA-G--GGAAAAAAAGCTTTTCTT
* * * * * * *
2390365 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAGGTGCTTT-TGATTCCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTG-TTTATGGTGCCTAATCTT
*
2390429 GAAAAGAATGGAGATTGTTACTAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * ** * *
2390460 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGAAAATAGGGCAAAGAAAAG-ATTTCAATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAATAAAATAGGG-AAA-AAAAGCTTTTC-TTG
** * * * * * * * * *
2390524 C-AAAAGAAATTCATCAACATCATTTGTCCTAATGAGGATAATGTATTTATTGTGCCTAATC-AG
62 CGAAACCAAA-GCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* * *** * * * *
2390587 AAAATGAATGAATATCAATACTATAATCCAC
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * ** *
2390618 GTTTGGCTCATTTGAG-GCACAAACTTAGACTTTAAAAAAATTTATTTG-AAAAAAGTCTTAT-T
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAA--TA-GGGAAAAAAAG-CTTTTCT
* * * * * * * *
2390680 TGCCAAACCAAAGCACCAATATCGTGTATACTAATG-AGAAGACTATGTTTAAGATGCCTAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * *
2390744 TGAAAAGAATGCG-GAATAG-TATGAGCATTC-AT
124 TGAAAAGAATG-GAG-ATTGTTACGAG-AATCGAT
* **
2390776 GTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCGAAAACGGTGGAAAAAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT--AAAATAG-GG-AAAAAAAGCTTTTCTT
* * * * * * * **
2390840 GGGACACTAAAGCATCATTGTCATGTATCCTAATGAAGGGAATGTGTTTTTAAAT-CCTAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTAT-GGTGCCTAATCTT
* * *
2390904 GAAAAGAATGGCGATTGTTA-GTAGAGTTGAT
125 GAAAAGAATGGAGATTGTTACG-AGAATCGAT
* * * * * *
2390935 GCTTGTCTTATTTAA-AGGATGAACTTTAATTTCAAGAAAATAGGGCAAAGAAAAG-ATTTCAAT
1 GTTTGTCTTATTTAAGA-GACGAACTTTGATTT-AATAAAATAGGG-AAA-AAAAGCTTTTC-TT
* ** * * * * * * * * * * **
2390998 GCAAAAGAAAATCAGCAACATC-TTTGATTCTATTGAGGATAATGTATTTATTGTGCCTAA-CCA
61 GCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTT
* * * * *** *
2391061 CAATATGAATGAATATCAATACTAGAATAC-AT
125 GAA-AAGAATGGAGATTGTTACGAGAAT-CGAT
* * * * ** * * * *
2391093 GTTTGGCTCATTTGAG-GCACGAACTTAGACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCTTG
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAA-TAG-GGAAAAAAAGCTTTTCTTG
* * ** *
2391157 CAAAACCAAAGCACCAATATCATGTATCCTAATG-AGAAGAATACGTTTAAGGTG-CTAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTG
* * ** *
2391220 AAAAGAATGGGGAATAG-TATTAGTATTC-AT
126 AAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * * *
2391250 CTTTGTCTTATTTAAGAGACAAACTTTAATTCT-ATCAAAA-ACGGTAGAAAGACAAGCTTTTCT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAATA-GG--GAAA-AAAAGCTTTTCT
* * * * * * *
2391313 TGCGACACAAAAGCATCAATGTCTTGTATCCTAATGAAGAAAATGTGTTTTTGGAT-CCCAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCT
* *
2391377 TGTAAAGAATGGAGATTGTTAGGAGAATCGAT
124 TGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * *
2391409 GCTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTTCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** * * * * * * * **
2391474 CAAAAAAAAATCATCAATAACTTGAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACA
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGA
* *** * * *
2391538 AAATGAATGAAGATCAATACTAGAATCCAC
127 AAA-GAATGGAGATTGTTACGAGAATCGAT
* * * ** ****
2391568 GTTTGGCTCATTTAAG-GCACGAACTTAGACTTTACGAAAATTAGTGGGGTGAAAG-TCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAA-TAG-GGAAAAAAAGCT-TTTCTT
* * ** ** *
2391631 GAGAAACCAAAGCATCCATATCATGTATCC-ATAT-AAGAAGGCTACGTTTATGGTGCCTAATCC
61 GCGAAACCAAAGCATCAATATCATGTATCCTA-ATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * * * * ** *
2391694 TAAAAAGAAAGGGAAATAG-TATGAGTTTTC-AA
124 TGAAAAG-AATGGAGATTGTTACGAG-AATCGAT
* * *
2391726 GTTTGTCTTATTTAAGAAACAAACTTTGATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCC
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAATA--G-GGAAA-AAAAGCTTTTCT
* * * * * * * * * *
2391789 TGCGACACGAAAGCCTCAATGTCATGTGT-C--ATTAAAAGAATGTGTTTTTGAAT-CCCAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATG-GTGCCTAATCT
*
2391850 TGAAAAGAATGGAAATTGTTACGAGAATCGAT
124 TGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * *
2391882 GCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGCAAAGACAAGATTTCCCTGC
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGGAAA-AAAAGCTTTTCTTGC
* ** * * * * **
2391947 AAAAAAAAAAAACATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-AC
63 --GAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* **** * *
2392011 AAAATGAATGAAGATCAACACTAGAATCAAT
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * ***
2392042 GTTTGGCTCATTTAAG-GCACGAACTTAGACTTTCGA-AAATTGGTGGGATGGAAGCTTTTCTTG
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTT-AATAAAATAG-GGAAAAAAAGCTTTTCTTG
* ** * *
2392105 AGAAACCAAAGCATCCGTATCATGCATCCT--T-AAGAGAAGGCTACGTTTATGGTGCCTAATCT
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATG-T--GTTTATGGTGCCTAATCT
* * * * **
2392167 CGAAAAGAAAGGGAAATGGTGT--GAGTTTTC-AT
124 TGAAAAG-AATGGAGATTGT-TACGAG-AATCGAT
* * * * * * *
2392199 GTTTGTCTTATTTAAGAAACAAATTTTGATTTTATCAAAAATGGTGGAAAAAAAAACTTTTCTTA
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTTAAT--AAAATAG-GG-AAAAAAAGCTTTTCTTG
* * * * * *
2392264 CGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAAGAATGTGTTTTTGGAT-CCCAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTG
*
2392328 AAAATG-ATGGAGATTGTTGCGAGAATCGAT
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * * ** * **
2392358 GCTTGCCTGATTTAAGGGATGAACTTTAATTTTAAGGAAAAAAGGCCAGGAAAAGATTTTCAAGC
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAGG-GAAAAAAAGCTTTTCTTGC
* ** * * * * * ***
2392423 AAAAGAAAATCATCAATATCAT-TAATCTTAATGAAGAGAACGCGTTTATAGTGCCTAATCACAA
63 GAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGA
* * *** ** * *
2392487 AAAGAATGAACATCAATATTAGAATCCAC
127 AAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * ** *** **
2392516 GTTTGGCTCATTTGAG-GCACAAACTTAGACTTTACGAAAATTAGTAGG-GTGAAAGCCGTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAA-TAG--GGAAAAAAAGCTTTTCTT
* * * ** ** * * *
2392579 GAGAAACCAAAGCATCCATATCATGTATCCTTATG-AGAAGGCTACGTTTATGCTGTCTAATCCT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * ** *
2392643 GAAAAGAAAAGG-GAATAGTGT--GAGTTTTC-AA
125 GAAAAG-AATGGAG-ATTGT-TACGAG-AATCGAT
* * * * *
2392674 CTTTGTCTTATTTAAGAGACAAACGTTAATTCT-ATCAAAAACAGTGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT--AAAATAG-GGAAA-AAAAGCTTTTCTT
* * * * * * * *
2392738 GC-AACACGAAGGCATCAATGTCATGTATCCTAATGAAGGGAATGCG-TTAT-TTAACCCCAATC
61 GCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGT--GCCTAATC
*
2392800 TTGAAAAGAATGGAGATTGATACGAGAATCGAT
123 TTGAAAAGAATGGAGATTGTTACGAGAATCGAT
** * * * * * * *
2392833 GCATGCCTTATTTAAGGGATGAACTTTGAATTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATA
1 GTTTGTCTTATTTAAGAGACGAACTTTG-ATTTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** * * * ** * **
2392898 CAAAAGAAAATCATCAATAACAT-TAATCTTAATGGGGAGAATGTGTTTATAGTGCCTAATC-AC
62 CGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* *** * * *
2392961 AAAATGAATGAAGATCAATACTAGAATCCAC
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * * * *
2392992 GTTTGGCTCATTTGAG-GTATGAACTTAGACTTTCAA-AAATTGGTGGGATAAAAGCCTTTCCTG
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTT-AATAAAATAG-GGAAAAAAAGCTTTTCTTG
* * * * *
2393055 AGAAACCAAAGCATCCATATCATGTATCCT--T-AAGAGAAGGCTGCATTTATGGAGCCTAATCC
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATG-TG--TTTATGGTGCCTAATCT
* * * **
2393117 TGAAAAGAAAGGGAAATGGTGT--GAGTTTTC-AT
124 TGAAAAG-AATGGAGATTGT-TACGAG-AATCGAT
* **
2393149 GTTTGCCTTATTTAAGAGA-GAAACTTTGATTCT-ATCAAAA-ACGGTGGAAAAAAAAGCAATTC
1 GTTTGTCTTATTTAAGAGACG-AACTTTGATT-TAAT-AAAATA--G-GG-AAAAAAAGCTTTTC
** * * * * *
2393211 TTATGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATC
59 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATC
*
2393275 TTGAAAATG-ATGGAGATTGTTGCGAGAATCGAT
123 TTGAAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * ** * **
2393308 GCTTGCCTGATTT-----ATGAACTTTGATTTTAAAGAAAAAAGGTGAGGAAAAGATTTTCAAGC
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTT-AATAAAATAGG-GAAAAAAAGCTTTTCTTGC
* ** * * * * * * **
2393368 AAAAGAAAATCATCAATATCAT-TAATCTTAATCAGGAGAACGTGTTTATAGTGCCTAATC-ACA
63 GAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGA
* * ** * * *
2393431 AAATAAGTGAAG-TTCAATACTAGAATCCAC
127 AAAGAA-TGGAGATT-GTTACGAGAATCGAT
* * * * ** * *** *
2393461 GTTTGGCTCATTTGAG-GCACGAACTTAGACTTTACGAAAATTGGTGAGGTGAAAGCCTTTCTTG
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAATAGG-GA-AAAAAAGCTTTTCTTG
* * * * ** * *
2393525 AGAAACCAAAGCATCCATATCATGTAGCCTTATG-AGAAGGCTATGTTTATGGTGCCTAATCCTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTG
* * * ** *
2393589 AAAAGAAAGGGGAATAGTGT--GAGTTTTC-AA
126 AAAAGAATGGAG-ATTGT-TACGAG-AATCGAT
* * * * *
2393619 GTTTGTCTTATCTAAGAGACAAACTTTGATTTTATTAAAAATGGTGGGAAGAAAAGCTTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAAT-AAAAT--AGGGAAAAAAAGCTTTTCTTG
* * * * * * * * *
2393684 TGACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTTTTGAAT-CCCAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATG-GTGCCTAATCTTG
*
2393748 AAAAGAATGGAGATTTTTACGAGAATCGAT
126 AAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * *
2393778 GCTTATCTTTTTTAAGGGATGAACTTTGA--TAAGTAAAATAGGGCAAAAAATAGATTTCCATAC
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTTAA-TAAAATAGGG-AAAAAA-AGCTTTTCTTGC
** * * * * * * **
2393841 -AAAAGAAA--ATCAATATCATTTATCCTAATTAGGAGAATATGTTTATAGTGCCAAATC-AAAA
63 GAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGAA
* * *** * *
2393902 AATGAATGAATATCAATACTAGAATCCAT
128 AA-GAATGGAGATTGTTACGAGAATCGAT
* * * ** *
2393931 GTTTGGCTTATTTGAG-GCACGAACTTAGACTTTACGAAAATTGAAGGG-AAAAAAGCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTAATAAAA-T--AGGGAAAAAAAGCTTTTCTT
** * * * * * * *
2393994 GAAAAACCAATGCATCAATCTCATGTATCCCT-ATG-AGAAAACTATGTTTACGGTGCCTACTCC
61 GCGAAACCAAAGCATCAATATCATGTAT-CCTAATGAAGAGAA-TGTGTTTATGGTGCCTAATCT
* ** * * *
2394057 TGAAAAGAATGGAGAATAATACAAGTATTC-TT
124 TGAAAAGAATGGAGATTGTTACGAG-AATCGAT
* * *
2394089 GTTTGTCTGATTTAAGAGACAAACTTTGATTCT-ATCAAAACTGGTGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAA-TAG-GGAAA-AAAAGCTTTTCTT
* * * * * * *
2394153 GCGACACCAAAGCTTCAATTTCAAGTATCCTAATGAAGAGAATGTGTTTTTGAAT-CCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATG-GTGCCTAATCTT
* *
2394217 GAAAAGAATGGAGATTGTTACGAGAATCAAA
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * *
2394248 GTTTTTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTTCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** * * * * * * * **
2394313 CAAAAAAAAATCGTCAATATCAT-TAATCTTTATGAGGAGAATGTGTTTATAGTACCTAATC-AC
62 CGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* * * *** * *
2394376 AAATTGAGTGAAAGATCAATACCAGAATCCAT
126 AAA-AGAATG-GAGATTGTTACGAGAATCGAT
* * * * * * *
2394408 GTTTGGCTTATTTGAG-GTACGAACTTAGACTTTACA-AAAATTGGTTGGAAAAAAGCCTTTCCT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATAGG--GAAAAAAAGCTTTTCTT
* * * * * * * *
2394471 ACTAAACCAAAGCACCAAAATCATGTATCCTAATG-AGAAGACTATGTTTAAGATGCCTAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * * * *
2394535 AAAAAGAATGCGAAATAG-TATGAGTATTC-AT
125 GAAAAGAATG-GAGATTGTTACGAG-AATCGAT
* * * * * *
2394566 GTTCGCCTTTTTTAAGAGACAAACTCTGATTCT-ATCAAAAATGATGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT--AAAAT-AGGGAAA-AAAAGCTTTTCTT
* * * * * *
2394630 GCGACACCAAATCATCAATGTCATGTATTCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTT
*
2394694 GAAAAGAATAGAGATTGTTACGAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
** * * * * * **
2394725 ACTTGTCTCT-TTTAAGGGATGCACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCAC
1 GTTTGTCT-TATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTT
* * ** * * * * *
2394789 ACAAAATAAAATCATCAATATCATTTATCCTAAT-AAGGGAAATGTGTTTATAGTGCCTAATC-A
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAG-AATGTGTTTATGGTGCCTAATCTT
* * * ** ** * **
2394852 AAAAATGAGTGAAGATCATTATTAGAGTCCTT
125 GAAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * *
2394884 GTTTGCCTTATTTGAAG-CACGAACTTAGACTTTACA-AAAATTGGAGGG-AAGAAAGCCTTTCT
1 GTTTGTCTTATTT-AAGAGACGAACTTTGA-TTTA-ATAAAA-T--AGGGAAAAAAAGCTTTTCT
* * ** * * * ** *
2394946 TGCAAAACCAAAGCACCAATATTGTGTATCTTAGTG-AGAAGACTACGTTTAAGGTGCCTAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * * **
2395010 TGAAAAGAATAGG-GAATAG-TATGAGTATTTAT
124 TGAAAAGAAT-GGAG-ATTGTTACGAGAATCGAT
* * * *
2395042 GTTTGTCTTATTTAAGAAACAAACTTTGATTCTATAAAAAATGGTGGAAAAAAAGCTTTTCTTGC
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TA-ATAAAATAG-GGAAAAAAAGCTTTTCTTGC
* * * * * * *
2395107 GACACCAAAGCATCAATGTCACGCATCCTAATGAAGAGGATGTGTTTTTGGAT-CCCAATCTTGA
63 GAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTGA
** * * * *
2395171 AAAGGTTGTAGATTGTTTCTAGAATCGGT
127 AAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * *
2395200 GCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** * * * * **
2395265 CAAAAGAAAATCATCAATATCAAT-TATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATC-AC
62 CGAAACCAAAGCATCAATATC-ATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
** * * * *
2395328 AAAATGAAATAAACATCGTTTCTG-GAATCCAT
126 AAAA-G-AATGGAGATTGTTAC-GAGAATCGAT
* * * * * ** * *
2395360 GTTTATCTCATTTAAGACACGAACTTAGACTTTACA-AAAGTTAGTGGGTAGAAAGCCTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTA-ATAAA-ATAG-GGAAAAAAAGCTTTTCTTG
* * * * * *
2395424 CGAAAGCAAAGCAGT-AATATCGTGTATCTTAATG-AGAAGACTTTGTTAATGGTGCCTAATCTT
62 CGAAACCAAAGCA-TCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * * **
2395487 GAAAAGAATGGGGAATAG-TATGAGTGTTC-AT
125 GAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * *
2395518 GTTTGTCTTATTTAAGAGACAAACTTTGACTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAAT--AAAATAG-GGAAA-AAAAGCTTTTCTT
* * * * * *
2395582 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTAGAT-CCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTAT-GGTGCCTAATCTT
* *
2395646 GAAAAGAACGGAGATTGTTACTAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * *
2395677 GCTTGTCTTATTTAGGGGATGAACGTTGATTTTAAGGAAAATAAGGAAAAGAAAAG-ATTTCAAT
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAAT-AGGGAAA-AAAAGCTTTTC-TT
* ** * * ** * * *
2395741 GCAAAATAAAATCATTAATATCAT-TAATGTTAATGAGGAGATTGT-TCTTATAGTGCCTAATC-
61 GCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGT-TTATGGTGCCTAATCT
** * *** * * *
2395803 ACAAAATGAATGAAGATCAATACTAGAATCCAG
124 TGAAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * *
2395836 GTTTGGCTCATTTGAG-GCACGAACTTAGACTTTTCAA-AAATTAATGGG-AAGAAAGCTTTTCT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA--TTT-AATAAAAT-A-GGGAAAAAAAGCTTTTCT
* * * * * * * * *
2395898 TGAGAAACCAAAGCGTCAATACCGTGTATCCTTATG-AGAAGACTATATTTATGGTGCCTAAT-A
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * ** * *
2395961 TGAAAAAGAATGGGGAATACTAAGAGTATTC-AT
124 TG-AAAAGAATGGAGATTGTTACGAG-AATCGAT
** * ** *
2395994 GTTTGTCTTATTTAAGAGATAAACTTTGATTCT-GTCAAAGACGGTGGTAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAA-ATAG-GG-AAAAAAAGCTTTTCTT
* * * *
2396058 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTT
* * * * * *
2396122 AAAAAGGATGGAGTTTGTTATGAGAATGGAC
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * **
2396153 GCTTG-CATTATTTAAGGGATGAACATTGATTTTAAGAAAAATAGAGCAAAGAAAAGATTTCCAA
1 GTTTGTC-TTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAG-GGAAA-AAAAGCTTTTCTT
** * * * ** *
2396217 GC-AAAGAAAATCATCAATATCGT-TAATCTTAATGAAGAGAATGTGTTTACAGTGCCTAATC-A
61 GCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTT
* ** ** * *
2396279 CAAAATGAATAAAGATCAATT-CTAGAA-CCAT
125 GAAAA-GAATGGAGAT-TGTTACGAGAATCGAT
** * ** * * * * *
2396310 GTTTCACTCATTGGAG-GTACGAACTTAGACCTTACA-AAAATAGGTGGGAAAATAGCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATA-G-GGAAAAAAAGCTTTTCTT
* * * * * * * *
2396373 GCGAAACCAAAGTACCAATATCGTGTATCCTAAAG-AGAAAACTATGTTCAAGGTGCCTAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAA-TGTGTTTATGGTGCCTAATCTT
* * * * * *
2396437 GAAAGGAATGGGGAATAGTATGCG-TATTC-AT
125 GAAAAGAATGGAG-ATTGT-TACGAGAATCGAT
* * *
2396468 GTTTGTCTTATTTAAGAGACAAATTTTGATTCAATCAAAA-ACGGTAGAAAAAAAGCTTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTTAAT-AAAATA-GG--GAAAAAAAGCTTTTCTTG
* * * *
2396532 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTG
2396596 AAAAGAATGGAGATTGTTACGAGAATCGAT
126 AAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * *
2396626 GCTTATCTTATTTAAGAGATGAACTTTGGTATTAAGTAAAATAGGGCAAAAAAATGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGG-AAAAAAA-GCTTTTCTTG
* ** * * * ** * **
2396691 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCGTAGTGCCTAATC-ACA
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGA
* * ** *
2396755 AAATGAATGAAGGTTAATACTAGAATTCG-T
127 AAA-GAATGGAGATTGTTACGAGAA-TCGAT
* * * * * * * *
2396785 GTGTGGCTCATTTGAG-GCACGAACTTTAACTTTACA-AAAATTGGTGAGAAGAAAGCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATAGG-GA-AAAAAAGCTTTTCTT
* * * ** * *** *
2396848 GTGAAACTAAAGCATCAATATCGTGTATCCTTTTG-AGAAGACTACATTTATGGTGCCTAATCCT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * * * *
2396912 -AAAAGGAATGGGAAATAG-TATGGGTATTC-AT
125 GAAAA-GAAT-GGAGATTGTTACGAG-AATCGAT
* *
2396943 GTTTGTCTT-TTTAAGAGACAAACTTTGATTTTATCAAAA-ACGATGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTTAAT-AAAATA-G--GGAAA-AAAAGCTTTTCTT
* * * * * * *
2397006 GC-AACCCCAAAGCGTCAATGTCTTGTATCCTAATGCAGAGAATGTGTTTTTGGAT-CC-AGTCT
61 GCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCT
* * **
2397068 TTACAAGCTTGGAGATTGTTACGAGAATCGAT
124 TGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * *
2397100 TTTTGCCTTATTTAA-AGGATGAACTTTGATATTAAGTAAAATAAGGTAGAGAATAGATTTCCAT
1 GTTTGTCTTATTTAAGA-GACGAACTTTGAT-TTAA-TAAAAT-AGGGA-AAAAAAGCTTTTCTT
* * ** * * * * * **
2397164 ACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATC-AC
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* **
2397228 AAAATGAATGAAGA-T-CAACGCTAGAATTC-AT
126 AAAA-GAATGGAGATTGTTACG--AGAA-TCGAT
* * * ** * * * * * * *
2397259 GTTTGGCTCATTTGAGTTACGAACTTAGACTTTGCAA-AAACTGGTGGGAAAAATGCCTTTCCTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTT--AATAAAATAG-GGAAAAAAAGCTTTTCTTG
* * * * * *
2397323 CGAAACCAAAGTACCAATATCGTGTATCCTAATG-AGAAGACTATGTTTACGGTGCCTAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTG
* * * * * *
2397387 AAAAGAAGGGGGAATAG-TATGACTATTC-AT
126 AAAAGAATGGAG-ATTGTTACGA-GAATCGAT
*
2397417 GTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAATA--G-GGAAA-AAAAGCTTTTCT
* * * * * * * * * *
2397480 TGCG-ATCGAGAGAATAAATGTCATGCATCCCAATGAAGAGAATGTGTTTTTGGAT-CCCAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCT
* *
2397543 TGAAAAGGATGGAGATTGTTATGAGAATCGAT
124 TGAAAAGAATGGAGATTGTTACGAGAATCGAT
* ** * * * * *
2397575 GCTTGTCCAATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
** * * * ** * **
2397640 -GAAAAGAAAATCATCAATATCATTTATCCTAAAGTGGAGAATGTGTTTATAGTGCCTAATC-AC
62 CG-AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* * *
2397703 AAAATGTATGAAGATCT-TTACTAGAATCCG-T
126 AAAA-GAATGGAGAT-TGTTACGAGAAT-CGAT
* * * * * * * * *
2397734 TTTTGTCTCATTTAAG-GTACAAACTTAGACTTTACA-AAAGTTCGTGGGAAGAAAGCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAA-ATAG-GGAAAAAAAGCTTTTCTT
* * * * *
2397797 GCGAAAGCAAAGC-TCTAATATCGTGTATCCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCT
61 GCGAAACCAAAGCATC-AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * * * *
2397860 TGAAAAGAATGGGGAATAG-TATGGGTATTC-AT
124 TGAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * * *
2397892 GTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAAAAAACATTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT--AAAATAG-GGAAAAAAAGCTTTTCTTG
* * * * *
2397956 TGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTG
* * * *
2398020 AAAATAATTGAGATTGTTACAAGAATTGAT
126 AAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * *
2398050 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAATAAAATAGGGCAAAGAAAAGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTT-AATAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** ** * * * * **
2398115 CAAAAGAAAATTATCAATATCATATATCTTAACG-AGAAGAATGTGTTTATAGTGCCTAATC-AC
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTG
* *** * * *
2398178 AAAATGAATGAAGATCAATACTAGAATCCAC
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * *
2398209 ATTTGGCTCATTTGAG-GTACGAAGTTAGACTTTACA-AAAATTGTTAGG-AAAAAAGCTTTTCT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATAG---GGAAAAAAAGCTTTTCT
* * * * * *
2398271 TGTGAAACCAAAGCACCAATTTCATGTATCCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * * * *
2398335 TGAAAAGAATGGGGAATAG-TATGGGTATTC-AT
124 TGAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * **
2398367 GTTTGTCTTATTTAAGAGACAAACTTTG-TTTCTATCAAAACGGTGGAAAGAAAAGCTTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTT-AAT-AAAATAG-GGAAA-AAAAGCTTTTCTTG
* ** * * * * *
2398431 CCACCCCAAAGAATCAATGTCATGTATCCTAAAGAAGAGAATGTGTTTTTGGAT-CCCAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTG
* *
2398495 AAAAGGATGGAGATTGTTATGAGAATCGAT
126 AAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * *
2398525 GCTTGTCCTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
1 GTTTGT-CTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTT
* ** ** * * * * * **
2398589 GCAAAAGAAAATTATCAATATCATATATCTTAACGAGGAGAATGTGTTTATAGTGCCTAATC-AC
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* *** * * *
2398653 AAAATGAATGAAGATCAATACTAGAATCCAC
126 AAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * *
2398684 ATTTGGCTCATTTGAG-GTACGAAGTTAGACTTTACA-AAAATTGTTGGGAAAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATAG--GGAAAAAAAGCTTTTCTT
* * * * * * * * * *
2398747 GTGAAACCAAAACACCAATTTCATGTATCCTAATG-AGAAGACTATGTTTAAGTTGGCTAATCAT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * * *
2398811 GAAAAGAATGGGGAATAG-TATGAGTATTC-AT
125 GAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * **
2398842 GTTTGTCTTATTTAAGAGACAAACTTTG-TTTCTATCAAAACGGTGGAAAGAAAAGCTTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTT-AAT-AAAATAG-GGAAA-AAAAGCTTTTCTTG
* * * * * *
2398906 C-AACCCCAAAGAATCAATGTCATGTATCCTAAAGAAGAGAATGTGTTTTTGGAT-CCCAATCTT
62 CGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTT
* *
2398969 GAAAAGGATGGAGATTGTTATGAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * * *
2399000 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** ** * * * * * **
2399065 CAAAAGAAAATTATCAATATCATATATCTTAACGAGGAGAATGTGTTTATAGTGCCTAATC-ACA
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGA
* ** * * *
2399129 AAATGAATGAAGATTAATACTAGAATCCAC
127 AAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * *
2399159 ATTTGGCTCATTTGAG-GTACGAAGTTAGACTTTACA-AAAATTGTTGGGAAAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATAG--GGAAAAAAAGCTTTTCTT
* * * * * * * * *
2399222 GTGAAACCAAAGCACCAATTTCATGTATCCTAATG-AGAAGACTATGTTTAAGTTGGCTAATCAT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTT
* * * * *
2399286 GAAAAGAATGGGGAATAG-CATGAGTATTC-AT
125 GAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * **
2399317 GTTTGTCTTATTTAAGAGACAAACTTT-ATTTCTATCAAAACGGTGGAAAGAAAAGCTTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGATTT-AAT-AAAATAG-GGAAA-AAAAGCTTTTCTTG
** * * * *
2399381 CGACCCCAAAGAATCAATGTCATGTATCCTAAAGAAGAGAATGTGATTT-TGGAT-CCCAATCTT
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTG-TTTATGG-TGCCTAATCTT
* *
2399444 GAAAAGGATGGAGATTGTTATGAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * *
2399475 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAATAAAATAGGGCAAAAAAAAGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTT-AATAAAATAGGG--AAAAAAAGCTTTTCTTG
* ** * * * * * * ** **
2399540 CAAAAGAAAATCATTAATATCATTTATCTTAATGAGGAGAATGTATTTATATTGCCTAATC-AAA
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGA
* **** * * *
2399604 AAATGAATGAAGATCAACACTAGAATCCAC
127 AAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * * * * * *
2399634 GTTTGGCTCATTTGAG-GTACGAACTTAGTTTTTACAAAATTGGTGGGAAAAAAGCCTTTCTTGC
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGATTTAATAAAA-TAG-GGAAAAAAAGCTTTTCTTGC
* * * * * * *
2399698 GAAACCAAAGCACCAATGTCATGCATCCTAATG-AGAAGACTTTGTTTAAGGTTCCTAATCTTGA
63 GAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTGA
* * * *
2399762 AAAGAATGGGGAATAGTT-TGAGTATTCG-T
127 AAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * * * *
2399791 GTTTGTCTTATTTAGGAGACAAACTTTGATTCT-ATAAAAAATGGTAGAAAGAAAAACATTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAATAAAATA-GG--GAAA-AAAAGCTTTTCTT
* * * * * * * *
2399855 GTGACACAAAAGCATCAATGTCTTGTATCCTAATTAAGAGAATGTGTTTTTGGAT-CCCAATCTT
61 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTT
* *
2399919 GAAAAAAATGGAGATTGCTACGAGAATCGAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * ** * *
2399950 GCTTGTTTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAATTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
* ** * * ** * *
2400015 CAAAAGAAAATCACCGGTATCATTTATCCTAATGAATGATCATTTATCCTAAGAATGTGTTTATA
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAA-G-------------AGAATGTGTTTATG
** * * ** ** *
2400080 GTGCCTAAT-TAAAAAAATAAATGAAGATCATTATTAGAATCCAT
113 GTGCCTAATCT-TGAAAA-GAATGGAGATTGTTACGAGAATCGAT
* * * * * **
2400124 GTTTG-CTTCATTT-GGGGCACGGACTTAGCCTTTACA-AAAATTTGAGGG-ATGAAAGCTTTTC
1 GTTTGTCTT-ATTTAAGAG-ACGAACTTTG-ATTTA-ATAAAA--T-AGGGAAAAAAAGCTTTTC
* * * * * * *
2400185 TTGCGAAACCAAAGCACCAATATCGTGTATCCTAAAG-AGAAGACTATGTTTAAGGTGCATAATC
59 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATC
* * * * **
2400249 TTGAAAAGAATGGGGAATAG-TATGGGTGTTC-AT
123 TTGAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * * * *
2400282 GTTTGTCTTATTTAAAATACAAACTTTGCTTCT-ATAAAAAACGGTGCAAAAAAA-CTTTTCTTG
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAATAAAATA-GG-G-AAAAAAAGCTTTTCTTG
* * * * ** * *
2400345 CGACACTAAAGCATCAATGTCATGTATCCTAATGATGAGAATGTGTTT-TTTTATCCCAATCTTG
62 CGAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGT-GCCTAATCTTG
*
2400409 AAAAGGATGGAGATTGTTACGAGAATCGAT
126 AAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * ** * * * * * * **
2400439 GCTTGCCTTATTCAAGGGATGAACAGTGATTTTAAGGAAAATAAGGCAGAGAAAAGATCTCCACG
1 GTTTGTCTTATTTAAGAGACGAACTTTGA-TTTAA-TAAAAT-AGGGA-AAAAAAGCTTTTCTTG
** * * * * * ** * **
2400504 C-AAAAGAGAATCATCCATATCACT-AATCGTAATGAGGAGAATGTGTTTATAATGCGTAATCAC
62 CGAAACCA-AAGCATCAATATCA-TGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTT
* * ** * * * *
2400567 AAAAAG-ATGAAGATCATTGCTAGAGTCTAT
125 GAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * **
2400597 GTTTGTCTCATTTGAG-GCACAAACTTAGACATTACA-AAAATTAGTGGCAAAAAACCCTTTCTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAA-TAG-GG-AAAAAAAGC-TT-TT
* * * * * * *
2400660 GTTGCAAAACCAAAGCACCAATATCGTGTATCCTAATG-AGAAGACTTTGTTTACGGTGCCTAAT
58 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAAT
* * * *
2400724 CTTGAAAAGAATGGGGAATAG-TATGAGTATTC-AT
122 CTTGAAAAGAATGGAG-ATTGTTACGAG-AATCGAT
* * *
2400758 GTTTGTCTTTTTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT--AAAATAG-GGAAA-AAAAGCTTTTCTT
* * * *
2400822 GCGACACCAAAGCATCAATGTCATGTA-CCGTAATGAAGAGAATGTGTTTTTGGAT-CCCAATCT
61 GCGAAACCAAAGCATCAATATCATGTATCC-TAATGAAGAGAATGTGTTTATGG-TGCCTAATCT
* **
2400885 TGTAAAGAATGGAGATTGTTGTGAGAATCGAT
124 TGAAAAGAATGGAGATTGTTACGAGAATCGAT
* * * * * *
2400917 GCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTAA-TAAAATAGGG-AAA-AAAAGCTTTTCTTG
** *** * * ** * * * * **
2400982 C-AAAAGAAAATTTCACTATCAT-TAATCTTTTTGAGGAAAATGTGTTTATTGTGCTTAATC-AC
62 CGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTG
* * * * ** *
2401044 AAATTGAGTGAAGACTAG-TATTAGAATCCAT
126 AAA-AGAATGGAGA-TTGTTACGAGAATCGAT
* * * * * * ** * *
2401075 GTTTGGCTCATTTAAG-GTACAAACTTAGACTTTACA-AAAGTTGGTTGGGAAGAAGCTTTTTTT
1 GTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTTA-ATAAAATAGG--GAAAAAAAGC-TTTTCT
* * * * * * *
2401138 TGCGAAACCAAAGCACCAATATC-TGCATCCTAATG-AGAAGACTATGTTTAAGATGTCTAATCT
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCT
* * * * ** *
2401201 TAAAAAGAATATGGA-ATAG-TATGAGTATTAAA
124 TGAAAAG-A-ATGGAGATTGTTACGAGAATCGAT
* *
2401233 GTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACCGTGAAAAGAAAAGCTTTTCT
1 GTTTGTCTTATTTAAGAGACGAACTTTGATT-TAAT-AAAATA--G-GGAAA-AAAAGCTTTTCT
* * * * * *
2401296 TACGACACCAAATCATCAATGTCATGTATCCTAAT-ATAGAGAATGTGTTTTTGGAT-CCCAATC
60 TGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AGAGAATGTGTTTATGG-TGCCTAATC
* *
2401359 TTGAAAAGAATGGAGATTGGTACGAGAATCAAT
123 TTGAAAAGAATGGAGATTGTTACGAGAATCGAT
** * * *
2401392 ACTTGTCTTA-TTAAGGGATGAACTTTGATATTATGTAAAATAGGGCAAAGAAAAG
1 GTTTGTCTTATTTAAGAGACGAACTTTGAT-TTA-ATAAAATAGGG-AAA-AAAAG
2401447 AGTTCCATGC
Statistics
Matches: 8409, Mismatches: 2745, Indels: 1567
0.66 0.22 0.12
Matches are distributed among these distances:
152 15 0.00
153 150 0.02
154 29 0.00
155 68 0.01
156 170 0.02
157 854 0.10
158 3275 0.39
159 3217 0.38
160 404 0.05
161 88 0.01
162 25 0.00
171 1 0.00
172 3 0.00
173 65 0.01
174 38 0.00
175 3 0.00
176 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (155 bp):
GTTTGTCTTATTTAAGAGACGAACTTTGATTTAATAAAATAGGGAAAAAAAGCTTTTCTTGCGAA
ACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
AATGGAGATTGTTACGAGAATCGAT
Found at i:2400058 original size:20 final size:19
Alignment explanation
Indices: 2400033--2400071 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
2400023 AATCACCGGT
2400033 ATCATTTATCCTAATGAATG
1 ATCATTTATCCTAA-GAATG
2400053 ATCATTTATCCTAAGAATG
1 ATCATTTATCCTAAGAATG
2400072 TGTTTATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATTTATCCTAAGAATG
Found at i:2402656 original size:601 final size:600
Alignment explanation
Indices: 2401506--2402685 Score: 2046
Period size: 601 Copynumber: 2.0 Consensus size: 600
2401496 TGTGCTCGGC
*
2401506 CTTTTTTACGAGTACTTCAGACAATCCGAAGAGCCAAAGCTCACTCGACTTAAAATAAAAGGGGA
1 CTTTTTAACGAGTACTTCAGACAATCCGAAGAGCCAAAGCTCACTCGACTTAAAATAAAAGGGGA
*
2401571 TAGTCAATATGCGGGGATGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGTGGTCA
66 TAGTCAATATGCGGGGATGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGAGGTCA
* *
2401636 TTACGAAATGACCATGAACTTAGAGTCGCCACCGATCATTCCGGGCTAGGCATGATCGGAAGCCT
131 TTACGAAATGACCATGAACTTAGAGTCACCACCGATCATTCCGAGCTAGGCATGATCGGAAGCCT
2401701 ATTGAAACCTATGTCTTGAGTCACGAAACTCAAAACATCAATTTCGCGATCTACGTAATTCAGAG
196 ATTGAAACCTATGTCTTGAGTCACGAAACTCAAAACATCAATTTCGCGATCTACGTAATTCAGAG
* * * *
2401766 ATTCGTGTTTGGGCTCGGGAGTTGGTTACGCGTGGGGAAGGATTAGCAGCCCCACAATGCCCGAA
261 ATTCGTGTTTGGGCTCGGGAGTTGGTTACGCATGGGGAAGAATTAGCACCCCCACAACGCCCGAA
* *
2401831 ATCAGTACCTTCTAACTATGTCTTACTAAAGTCTTGATTTTCTCGGTTCCATTTTTATCATTACT
326 ATCAGTACCTTCTAACTACGTCTTACTAAAATCTTGATTTTCTCGGTTCCATTTTTATCATTACT
*
2401896 TAGATGTGATTCCCTCTAATGCATGAAGTTTTGTGAAAACTACAAATCCGAGTTTAAGATGAAAA
391 TAGATGTAATTCCCTCTAATGCATGAAGTTTTGTGAAAACTACAAATCCGAGTTTAAGATGAAAA
2401961 CTTATATCACCTATACACCTCAGAGAAGTGAGGGACACGATGATTTTTTTATAGAAAAGGTTTCC
456 CTTATATCACCTATACACCTCAGAGAAGTGAGGGACACGATGATTTTTTTATAGAAAAGGTTTCC
*
2402026 GGATTGGGTTTGAAAAAAATCAGATATTTCGTGTCAAGTACTGGAGAGATACCGACACAGAGCTG
521 GGATTGGGTTTGAAAAAAATCAAATATTTCGTGTCAAGTACT--AGAGATACCGACACAGAGCTG
2402091 TCGCAAAGTGCGCTCAG
584 TCGCAAAGTGCGCTCAG
*
2402108 CTTTTTAACGAGTACTTC-GAACGATCCGAAGAGCCAAAGCTCACTCGACTTAAAATAAAAGGGG
1 CTTTTTAACGAGTACTTCAG-ACAATCCGAAGAGCCAAAGCTCACTCGACTTAAAATAAAAGGGG
2402172 ATAGTCAATATGCGAGGG-TGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGAGGT
65 ATAGTCAATATGCG-GGGATGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGAGGT
* * *
2402236 CATTAC-AAATGACCATGAACTTGGAGTCACCACCGATCATTTCGAGCTAGGCATGATCGGATGC
129 CATTACGAAATGACCATGAACTTAGAGTCACCACCGATCATTCCGAGCTAGGCATGATCGGAAGC
* * *
2402300 CTATTGAAACCTATGTCTTGAGTCACGAAACTCGAAACAT-AGATTTTGCGGTCTACGTAATTCA
194 CTATTGAAACCTATGTCTTGAGTCACGAAACTCAAAACATCA-ATTTCGCGATCTACGTAATTCA
*
2402364 GAGATTCGTGTTTGGGCTCGGGAGTTGGTTACGCATGGGGAAGAATTAGCACCCCCACGACGCCC
258 GAGATTCGTGTTTGGGCTCGGGAGTTGGTTACGCATGGGGAAGAATTAGCACCCCCACAACGCCC
*
2402429 GAAATCGGTACCTTCTAACTACGTCTTACTAAAATCTTGATTTTCTCGGTTCCATTTTTATCATT
323 GAAATCAGTACCTTCTAACTACGTCTTACTAAAATCTTGATTTTCTCGGTTCCATTTTTATCATT
*
2402494 ACTTAGATGTAATTCCCTCTAATGCATGAAGTTTTGTGAAAACTACAAATCCGGGTTTAAGATGA
388 ACTTAGATGTAATTCCCTCTAATGCATGAAGTTTTGTGAAAACTACAAATCCGAGTTTAAGATGA
* *
2402559 AAACTTATATCACCTATGCACCTCGGAGAAGTGAGGGACACGATGA-TTTTTTATAGAAAAGGTT
453 AAACTTATATCACCTATACACCTCAGAGAAGTGAGGGACACGATGATTTTTTTATAGAAAAGGTT
*
2402623 TTCGGATTGGGTTTGGAAAAAAATCAAATATTTCGTGTCAAGTACTAGAGATACCGACACAGA
518 TCCGGATTGGGTTT-GAAAAAAATCAAATATTTCGTGTCAAGTACTAGAGATACCGACACAGA
2402686 ACATCGTTTT
Statistics
Matches: 549, Mismatches: 25, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
599 17 0.03
600 32 0.06
601 372 0.68
602 125 0.23
603 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (600 bp):
CTTTTTAACGAGTACTTCAGACAATCCGAAGAGCCAAAGCTCACTCGACTTAAAATAAAAGGGGA
TAGTCAATATGCGGGGATGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGAGGTCA
TTACGAAATGACCATGAACTTAGAGTCACCACCGATCATTCCGAGCTAGGCATGATCGGAAGCCT
ATTGAAACCTATGTCTTGAGTCACGAAACTCAAAACATCAATTTCGCGATCTACGTAATTCAGAG
ATTCGTGTTTGGGCTCGGGAGTTGGTTACGCATGGGGAAGAATTAGCACCCCCACAACGCCCGAA
ATCAGTACCTTCTAACTACGTCTTACTAAAATCTTGATTTTCTCGGTTCCATTTTTATCATTACT
TAGATGTAATTCCCTCTAATGCATGAAGTTTTGTGAAAACTACAAATCCGAGTTTAAGATGAAAA
CTTATATCACCTATACACCTCAGAGAAGTGAGGGACACGATGATTTTTTTATAGAAAAGGTTTCC
GGATTGGGTTTGAAAAAAATCAAATATTTCGTGTCAAGTACTAGAGATACCGACACAGAGCTGTC
GCAAAGTGCGCTCAG
Found at i:2403215 original size:78 final size:79
Alignment explanation
Indices: 2403102--2403251 Score: 216
Period size: 78 Copynumber: 1.9 Consensus size: 79
2403092 GGGGGTTGTG
*
2403102 AAAAATCGATGATTTGGAAATAAAATCGGGATTGGAGCATCCCCTCGGAAATAACAGGG-TGAAG
1 AAAAATCGATGATTTAGAAATAAAATCGGGATTGGAGCATCCCCTCGGAAATAACAGGGTTGAAG
2403166 TATCCCCGACTATA
66 TATCCCCGACTATA
* * * *
2403180 AAAAATTGATGTTTTAGAAATAAAA-CTGAGG-TTGGAGTATCCCCTCGGAAATAACAGGGTTGG
1 AAAAATCGATGATTTAGAAATAAAATC-G-GGATTGGAGCATCCCCTCGGAAATAACAGGGTTGA
2403243 AGTATCCCC
64 AGTATCCCC
2403252 TCGAAAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
77 1 0.02
78 50 0.78
79 13 0.20
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (79 bp):
AAAAATCGATGATTTAGAAATAAAATCGGGATTGGAGCATCCCCTCGGAAATAACAGGGTTGAAG
TATCCCCGACTATA
Found at i:2403243 original size:28 final size:28
Alignment explanation
Indices: 2403209--2403279 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
2403199 ATAAAACTGA
*
2403209 GGTTGGAGTATCCCCTCGGAAATAACAG
1 GGTTGGAGTATCCCCTCGAAAATAACAG
**
2403237 GGTTGGAGTATCCCCTCGAAAATAATGG
1 GGTTGGAGTATCCCCTCGAAAATAACAG
2403265 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
2403280 GATGAAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTCGAAAATAACAG
Found at i:2403304 original size:104 final size:104
Alignment explanation
Indices: 2403133--2403355 Score: 304
Period size: 104 Copynumber: 2.1 Consensus size: 104
2403123 AAAATCGGGA
* *
2403133 TTGGAGCATCCCCTCGGAAATAACAGGGTGAAGTATCCCCGACTATAAAAAATTGATGTTTTAGA
1 TTGGAGTATCCCCTCGAAAATAACAGGGTGAAGTATCCCCGA--ATAAAAAATTGATGTTTTAGA
* *
2403198 AATAAAACTGAGGTTGGAGTATCCCCTCGGAAATAACAGGG
64 AATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACAGGG
** * *
2403239 TTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCCCG-ATGAAAAATTGATGTTTTAGAA
1 TTGGAGTATCCCCTCGAAAATAACAGGG-TGAAGTATCCCCGAATAAAAAATTGATGTTTTAGAA
* * * *
2403303 ATAAAACCGGGGTTGGAGTGTCCCTTCGAAAATAACGGGG
65 ATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACAGGG
2403343 TTGGAGTATCCCC
1 TTGGAGTATCCCC
2403356 GATTATGAAA
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
104 68 0.65
106 24 0.23
107 12 0.12
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (104 bp):
TTGGAGTATCCCCTCGAAAATAACAGGGTGAAGTATCCCCGAATAAAAAATTGATGTTTTAGAAA
TAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACAGGG
Found at i:2403320 original size:76 final size:77
Alignment explanation
Indices: 2403236--2403400 Score: 251
Period size: 76 Copynumber: 2.1 Consensus size: 77
2403226 GGAAATAACA
*
2403236 GGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCCCG-ATGAAAAATTGATGTTTTA
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGTATGAAAAATTGATGTTTTA
*
2403300 GAAATAAAACCG
66 GAAACAAAACCG
* *
2403312 GGGTTGGAGTGTCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCG--TATGAAAAATTGATGTTT
*
2403377 TAGAAACGAAACCG
64 TAGAAACAAAACCG
*
2403391 GGATTGGAGT
1 GGGTTGGAGT
2403401 GTTCCCGAGA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
76 42 0.52
79 38 0.47
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (77 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGTATGAAAAATTGATGTTTTA
GAAACAAAACCG
Found at i:2403398 original size:79 final size:76
Alignment explanation
Indices: 2403239--2403402 Score: 247
Period size: 79 Copynumber: 2.1 Consensus size: 76
2403229 AATAACAGGG
* *
2403239 TTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAA
1 TTGGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAA
* *
2403304 TAAAACCGGGG
66 CAAAACCGGGA
*
2403315 TTGGAGTGTCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG
1 TTGGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCCG---ATGAAAAATTGATGTTTTAG
*
2403380 AAACGAAACCGGGA
63 AAACAAAACCGGGA
2403394 TTGGAGTGT
1 TTGGAGTGT
2403403 TCCCGAGATG
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
76 39 0.49
79 40 0.51
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (76 bp):
TTGGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAA
CAAAACCGGGA
Found at i:2405721 original size:20 final size:21
Alignment explanation
Indices: 2405696--2405738 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
2405686 AAAATGCCTA
2405696 AATGTATCGATACAT-TGGGT
1 AATGTATCGATACATCTGGGT
2405716 AATGTATCGATACATCTGGGT
1 AATGTATCGATACATCTGGGT
2405737 AA
1 AA
2405739 AATTTTAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATCTGGGT
Found at i:2405792 original size:21 final size:21
Alignment explanation
Indices: 2405768--2405809 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2405758 ACAAAAGATC
2405768 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
2405789 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
2405810 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:2405858 original size:19 final size:19
Alignment explanation
Indices: 2405834--2405906 Score: 101
Period size: 19 Copynumber: 3.7 Consensus size: 19
2405824 AGCAATACAT
2405834 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
2405853 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
* *
2405872 TGTATCGATACATATACTGTT
1 TGTATCGATACA-AAACT-TA
2405893 TGTATCGATACAAA
1 TGTATCGATACAAA
2405907 TTGTTTGGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
19 30 0.62
20 5 0.10
21 13 0.27
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:2406713 original size:119 final size:116
Alignment explanation
Indices: 2406514--2406729 Score: 260
Period size: 119 Copynumber: 1.8 Consensus size: 116
2406504 GGTGTCCCAC
* * * * *
2406514 TTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCTTTGAGGACAAAGGGAGAGAAGA
1 TTTTTGAAGACAAAGGAAAAGAGAACGAAATACGTCCTGCTCTTTGAGGACAAA-GGAAAGAAGA
2406579 AAAGGAAAGTGTCCTGCT-TCTTGAGGA-TAAAGTGAAAAAGGGTACGTCTCG
65 AAAGGAAAGTGTCCTGCTCT-TTGAGGACTAAAGTGAAAAAGGGTACGTCTCG
*
2406630 TTTTTCGAAGACAAAGGAAAAAGGGAAACGAAATACGTCCTGCTCTTTGAGGACGAAA-GAAAGA
1 TTTTT-GAAGACAAAGG-AAAAGAG-AACGAAATACGTCCTGCTCTTTGAGGAC-AAAGGAAAGA
* *
2406694 GGAAAA-TAAAGTGCATCCTGCTCTTTGAGGACTAAA
62 AGAAAAGGAAAGTG--TCCTGCTCTTTGAGGACTAAA
2406730 AAGTGCCACC
Statistics
Matches: 84, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
116 5 0.06
117 16 0.19
118 16 0.19
119 39 0.46
120 8 0.10
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.22
Consensus pattern (116 bp):
TTTTTGAAGACAAAGGAAAAGAGAACGAAATACGTCCTGCTCTTTGAGGACAAAGGAAAGAAGAA
AAGGAAAGTGTCCTGCTCTTTGAGGACTAAAGTGAAAAAGGGTACGTCTCG
Found at i:2406760 original size:28 final size:28
Alignment explanation
Indices: 2406729--2406814 Score: 70
Period size: 26 Copynumber: 3.1 Consensus size: 28
2406719 TGAGGACTAA
2406729 AAAGTGCCACCAACTCGTGTGAGCTTTG
1 AAAGTGCCACCAACTCGTGTGAGCTTTG
** * ***
2406757 AAAG-G-CATCCTGCTC-TTTGAGGACTG
1 AAAGTGCCA-CCAACTCGTGTGAGCTTTG
*
2406783 AAAGGTGCCACCAACTCGTGTGGGCTTTG
1 AAA-GTGCCACCAACTCGTGTGAGCTTTG
2406812 AAA
1 AAA
2406815 AGAAAAGACG
Statistics
Matches: 40, Mismatches: 13, Indels: 9
0.65 0.21 0.15
Matches are distributed among these distances:
26 12 0.30
27 7 0.17
28 10 0.25
29 11 0.28
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (28 bp):
AAAGTGCCACCAACTCGTGTGAGCTTTG
Found at i:2406859 original size:61 final size:57
Alignment explanation
Indices: 2406709--2407356 Score: 754
Period size: 55 Copynumber: 11.3 Consensus size: 57
2406699 ATAAAGTGCA
* * * *
2406709 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGAGCTTTG-AAAG-GCA
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
* *
2406764 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGACG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAG---AG-CG
* *
2406825 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAACA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAG----AGCG
2406886 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAG-GCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
* * **
2406941 TTCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTCTGCAAAGAGAAAGTA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AGCG
* ** * *
2407002 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTCTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AA--AAGA-GCG
* *
2407063 TCATGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
* *
2407119 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAG-GTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
* *
2407174 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG-GCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
* *
2407229 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAG-GTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
*
2407284 TCCTGCTCTTTGAGGACTAGG-AAATGCCACCAACTTGTGTGGGCTTT-AAAAG-GCA
1 TCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
*
2407339 CCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
2407357 AAAGGGCGAA
Statistics
Matches: 528, Mismatches: 43, Indels: 44
0.86 0.07 0.07
Matches are distributed among these distances:
55 285 0.54
56 31 0.06
57 3 0.01
58 4 0.01
60 9 0.02
61 164 0.31
62 31 0.06
63 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (57 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAGCG
Found at i:2407008 original size:177 final size:175
Alignment explanation
Indices: 2406706--2407329 Score: 848
Period size: 177 Copynumber: 3.6 Consensus size: 175
2406696 AAAATAAAGT
* * * * *
2406706 GCATCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGAGCTTTGAAAGGCATCCTGC
1 GCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGC
* *
2406770 TCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA-AGAAAAG-ACGTCCTGCT
66 TCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGC-TTGAAAGAG-AAAGTA--TCCTGCT
2406832 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAA
126 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAG-AAAA
* *
2406883 ACATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTTCTGC
1 GCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGC
2406947 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTCTGCAAAGAGAAAGTATCCTGCTCTT
66 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCT-TG-AAAGAGAAAGTATCCTGCTCTT
* ** * *
2407012 TGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTCTGAAAGGAAAA
129 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAA
* * *
2407059 GGCGTCATGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTG
1 -GCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTG
* *
2407124 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTT-TAAGAG---GTGTCCTGCTCTTT
65 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTGAAAGAGAAAGTATCCTGCTCTTT
*
2407185 GAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG----
130 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAA
* *
2407226 GCATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGC
1 GCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGC
2407290 TCTTTGAGGACTAGG-AAATGCCACCAACTTGTGTGGGCTT
66 TCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTT
2407330 TAAAAGGCAC
Statistics
Matches: 406, Mismatches: 32, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
165 72 0.18
166 26 0.06
171 3 0.01
172 45 0.11
175 5 0.01
176 5 0.01
177 157 0.39
178 90 0.22
179 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (175 bp):
GCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGC
TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTGAAAGAGAAAGTATCCTGCTCTTTG
AGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAA
Found at i:2407114 original size:28 final size:28
Alignment explanation
Indices: 2407083--2407167 Score: 66
Period size: 28 Copynumber: 3.1 Consensus size: 28
2407073 TGAGGACTAG
2407083 AAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGTGCCACCAACTTGTGTGGGCTTT
** ** * * * **
2407111 AAAAG-GCGTCCTGCTCTTTGAGGACTGG
1 AAAAGTGCCACCAACT-TGTGTGGGCTTT
2407139 AAAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGTGCCACCAACTTGTGTGGGCTTT
2407166 AA
1 AA
2407168 GAGGTGTCCT
Statistics
Matches: 37, Mismatches: 18, Indels: 5
0.62 0.30 0.08
Matches are distributed among these distances:
27 15 0.41
28 22 0.59
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (28 bp):
AAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:2407545 original size:61 final size:61
Alignment explanation
Indices: 2407375--2407666 Score: 357
Period size: 60 Copynumber: 4.9 Consensus size: 61
2407365 AAAGGAGGGA
* * * *
2407375 GCGTCCTGCTCTTTGAGGATTGGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAAACG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
** * * * * *
2407436 GTATCCTACTCTTTGAGGACT-GAAGGTGCCACCAACTTATGTGGGCTTTAAGAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* *
2407496 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTT------AAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * *
2407551 GCGTCATGCTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
**
2407612 GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCGGCTTGTGTGGGCTTTAAAAGG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
2407667 CATCCTGCTC
Statistics
Matches: 197, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
55 50 0.25
60 81 0.41
61 66 0.34
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:2407992 original size:60 final size:60
Alignment explanation
Indices: 2407705--2408445 Score: 918
Period size: 61 Copynumber: 12.3 Consensus size: 60
2407695 AAAGGAGAGA
2407705 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTA--AAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * *
2407766 GCATCCTGCTCTTTGAGGATTGAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGGAAAAAG
1 GCGTCCTGCTCTTTGAGGACT-A-AAGGTGCCACCAACTTGTGTGGGCTTTAAAA-AG-AAAAG
* *
2407829 GTGTGCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT------AAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
*
2407884 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * * *
2407945 GCGCCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * * *
2408005 GTGTCTTGCTCTTTGAGGACTAAAGATGCCACCAACTCGTGTGGGCTTT------AAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
*
2408059 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAATTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * *
2408120 GCG-CCTTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAG
1 GCGTCC-TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* *
2408180 GTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAG
* ** * * *
2408241 GCGTCCTGCTTTTTGAGGACTGGAGGTGCCACAAACTTGTGTGGGCTTTGAAAAGAAAAAAA
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAA-AGAAAAG
** * * *
2408303 ATGTCTTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAG
* * * *
2408364 GCGTCCCGCTCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAG
*
2408425 GCATCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
2408446 GGAAGGGCTA
Statistics
Matches: 594, Mismatches: 63, Indels: 46
0.84 0.09 0.07
Matches are distributed among these distances:
54 23 0.04
55 78 0.13
60 167 0.28
61 225 0.38
62 53 0.09
63 48 0.08
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
Found at i:2408083 original size:175 final size:176
Alignment explanation
Indices: 2407705--2408451 Score: 991
Period size: 175 Copynumber: 4.2 Consensus size: 176
2407695 AAAGGAGAGA
* *
2407705 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
1 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
* *
2407769 TCCTGCTCTTTGAGGATTGAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGGAAAAAGGTGT
65 CCCTGCTCTTTGAGGACT-A-AAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GG-AAAAGGTGT
* *
2407833 GCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG
126 CCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAG
*
2407884 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGC
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGC
* * *
2407949 CCTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAGGTGTCTTGC
66 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGC
*
2408014 TCTTTGAGGACTAAAGATGCCACCAACTCGTGTGGGCTTT-AAAAG
131 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAG
*
2408059 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAATTGTGTGGGCTTTAAAAAGAAAAGGCGC
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGC
* * *
2408124 CTTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAGGTGTCCTGC
66 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGC
2408189 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAG
131 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT------AAAAAG
* * * * ***
2408241 GCGTCCTGCTTTTTGAGGACTG-GAGGTGCCACAAACTTGTGTGGGCTTTGAAAAGAAAAAAAAT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAA-AGAAAAGGC
* * * * *
2408305 GTCTTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
64 GCCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGTGTCC
* *
2408370 CGCTCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
128 TGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT------AAAAAG
* *
2408425 GCATCCTGCTCTTTGAGGACTGGAAGG
1 GCGTCCTGCTCTTTGAGGACTGAAAGG
2408452 GCTAAAAGAG
Statistics
Matches: 519, Mismatches: 36, Indels: 20
0.90 0.06 0.03
Matches are distributed among these distances:
175 196 0.38
176 23 0.04
177 4 0.01
178 32 0.06
179 72 0.14
181 24 0.05
182 30 0.06
183 49 0.09
184 86 0.17
185 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (176 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGC
CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGC
TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAG
Found at i:2408357 original size:123 final size:123
Alignment explanation
Indices: 2408061--2408445 Score: 548
Period size: 123 Copynumber: 3.2 Consensus size: 123
2408051 TTTAAAAGGC
* *
2408061 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAATTGTGTGGGCTTTAAAAAG-AAAAGGCG-C
1 GTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTC
* * **
2408124 CTTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAGAGGT
65 C-TGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAAAT
2408182 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCC
** *
2408247 TGCTTTTTGAGGACTGGAGGTGCCACAAACTTGTGTGGGCTTTGAAAAGAAAAAAAAT
66 TGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAAAT
* *
2408305 GTCTTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCC
* * * * **
2408370 CGCTCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA-
66 TGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAA-AAAT
2408428 -TCCTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
2408446 GGAAGGGCTA
Statistics
Matches: 238, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
120 32 0.13
121 67 0.28
122 24 0.10
123 114 0.48
124 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (123 bp):
GTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCC
TGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAAAT
Found at i:2414849 original size:106 final size:106
Alignment explanation
Indices: 2414658--2414860 Score: 237
Period size: 106 Copynumber: 1.9 Consensus size: 106
2414648 AAAATAAAAT
** * * *
2414658 CGGGGTTGGAGTATCCCCGTGAAAATAATGGGGTTGGAGTATCCTCGATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCGTG-AAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATTAATAT
**
2414723 TTTAGAAATAAGGCCAGGGTTGAAGTATCCCCTCGGAAGTGA
65 TTTAGAAATAAAACCAGGGTTGAAGTATCCCCTCGGAAGTGA
* * ** *
2414765 CGGGGTTGGAGTATCCCCGATG-ATTAACAGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGT
1 CGGGGTTGGAGTATCCCCG-TGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATTAATAT
* * * *
2414829 TTTAGATATAAAATCGGGGTTGGAGTATCCCC
65 TTTAGAAATAAAACCAGGGTTGAAGTATCCCC
2414861 GAGATGAAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
106 58 0.73
107 19 0.24
108 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (106 bp):
CGGGGTTGGAGTATCCCCGTGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATTAATATT
TTAGAAATAAAACCAGGGTTGAAGTATCCCCTCGGAAGTGA
Found at i:2417187 original size:13 final size:13
Alignment explanation
Indices: 2417169--2417194 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2417159 ACAAAGATTG
2417169 ATGTATCGATACA
1 ATGTATCGATACA
2417182 ATGTATCGATACA
1 ATGTATCGATACA
2417195 CTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2417207 original size:21 final size:21
Alignment explanation
Indices: 2417181--2417222 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2417171 GTATCGATAC
2417181 AATGTATCGATACACTTCCTT
1 AATGTATCGATACACTTCCTT
*
2417202 AATGTATCGATACATTTCCTT
1 AATGTATCGATACACTTCCTT
2417223 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACACTTCCTT
Found at i:2417257 original size:13 final size:13
Alignment explanation
Indices: 2417239--2417290 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
2417229 AGCTTCGTAG
2417239 CGATACATTGTAT
1 CGATACATTGTAT
2417252 CGATACAACACTTATGTAT
1 CGAT---ACA-TT--GTAT
2417271 CGATACATTGTAT
1 CGATACATTGTAT
2417284 CGATACA
1 CGATACA
2417291 CCACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 15 0.45
15 2 0.06
16 6 0.18
17 2 0.06
19 8 0.24
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:2417271 original size:19 final size:19
Alignment explanation
Indices: 2417247--2417309 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
2417237 AGCGATACAT
2417247 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2417266 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
2417279 TGTATCGATACACCACTTA
1 TGTATCGATACAACACTTA
2417298 TGTATCGATACA
1 TGTATCGATACA
2417310 TTTATTGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
16 5 0.14
18 1 0.03
19 21 0.57
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:2417280 original size:32 final size:32
Alignment explanation
Indices: 2417239--2417311 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
2417229 AGCTTCGTAG
2417239 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
2417271 CGATACATTGTATCGATACACCACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
2417303 CGATACATT
1 CGATACATT
2417312 TATTGTTTGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:2418532 original size:477 final size:476
Alignment explanation
Indices: 2417608--2418759 Score: 1431
Period size: 477 Copynumber: 2.4 Consensus size: 476
2417598 CCTAATGAGT
* * * *
2417608 AGAATGCGTTTATAGTGCCTAATCAAAAAATGAATGAAGGTCATTAT-TAGAACCCATGTTTGCC
1 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT-TCTAGAATCCATGTTTGCC
* *
2417672 TCATTTGAA-GTACGAACTTTAGACTTTACAAAAATTGGAGAGAAGAAAGCCTTTCTTGCGAAAC
65 TCATTT-AAGGCACGAAC-TTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAAC
** * * * * *
2417736 CAATTCACCAATATCGTGTATTCTGAA-AAGAAGACTATGTTTAA-GCTGCCTAATCGTAAAAAG
128 CAAAGCACCAATATCGTGTA-TCTTAATGAGAAGACTATG-TTAATGGTGCCTAATCCTGAAAAG
* * * * *
2417799 AATAGGGAATAGTATGTGTATTCATGTTTGACTTCTTTAAAAAAACAAACTTTGATTTTATCAAA
191 AATGGGGAATAGTATGAGTATTCATGTTTGACTTATTTAAAAAAACAAACTTTGACTCTATCAAA
*
2417864 AACGGTGGAAAAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGCATCCGAATGAAGAGA
256 AACGGTGGAAAAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGCATCCGAATAAAGAGA
* * * * ** *
2417929 ATGTGTTTTTGGATCCTAATCTTGAAAAGGATATAGATTGTTTTTAGAATCGGTGCTTGTCTTAT
321 ATCTATTTTTGGATCCCAATCTTGAAAAGGATAGAGATTGTTACTAGAATCGATGCTTGTCTTAT
* * *
2417994 TTAAGGGATGAACTTTGATTTTAAGGAAAATTGGGCAAAAAAAAGATTTCCATGTAAAAGAAAAT
386 TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAAT
* *
2418059 CAACAATATCATTTATCCTGAA-GAGG
451 CAACAATATCATTAAT-CTGAATCAGG
* * *
2418085 AGAATGTGTTTATAGTGCCTAATCACAAAACGAAATGAAGATCATTTCTAGAATCTATGTTTGTC
1 AGAATGTGTTTATAGTGCCTAATCACAAAATG-AATGAAGATCATTTCTAGAATCCATGTTTGCC
* * * * * * *
2418150 TCATTTAAGGCATGAACTTAGACTTCACATAAGTTAGTGGGAAGAAAGCCTTTCTTCCGAAACCA
65 TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCA
* *
2418215 AAGCACCAATATCGTGTATCTTAATGAGAAGACTATGTTAATGGTGCGTAATCTTGAAAAGAATG
130 AAGCACCAATATCGTGTATCTTAATGAGAAGACTATGTTAATGGTGCCTAATCCTGAAAAGAATG
* * * *
2418280 GGGAATAGTTTGAGTGTTCATGTTTGTCTTATTT-AAAAGACAAACTTTGACTCTATCAAAAACG
195 GGGAATAGTATGAGTATTCATGTTTGACTTATTTAAAAAAACAAACTTTGACTCTATCAAAAACG
* * * * *
2418344 GTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATC
260 GTGGAAA-AAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGCATCCGAATAAAGAGAATC
2418409 TATTTTTGGATCCCAATCTTGAAAA-GAGTAGAGATTGTTACTAGAATCGATGCTTGTCTTATTT
324 TATTTTTGGATCCCAATCTTGAAAAGGA-TAGAGATTGTTACTAGAATCGATGCTTGTCTTATTT
* * * *
2418473 AGGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGGTTTCAATGCAAAAGAAAATCA
388 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAATCA
** * *
2418538 TTAATATCATTAATGTTAATCAGG
453 ACAATATCATTAATCTGAATCAGG
* * * * * * *
2418562 AGACTATGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCAATCCTAGAATCCA-GGTTGGCT
1 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGCCT
** * * **
2418626 CATTCGAGGCACGAACTTAGACTTTTCAAAAATTGGAGGGAAGAAAGCTTTTCTTGTAAAACCAA
66 CATTTAAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAA
* * * ** * *
2418691 AGCATCAATATCGTGTATCCTT-ATGAGAAGGCCACATTGATGGTGCCTAATCCCGAAAAGAATG
131 AGCACCAATATCGTGTAT-CTTAATGAGAAGACTATGTTAATGGTGCCTAATCCTGAAAAGAATG
2418755 GGGAA
195 GGGAA
2418760 AGAAAAGCTT
Statistics
Matches: 576, Mismatches: 90, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
475 114 0.20
476 71 0.12
477 353 0.61
478 38 0.07
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (476 bp):
AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGCCT
CATTTAAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACCAA
AGCACCAATATCGTGTATCTTAATGAGAAGACTATGTTAATGGTGCCTAATCCTGAAAAGAATGG
GGAATAGTATGAGTATTCATGTTTGACTTATTTAAAAAAACAAACTTTGACTCTATCAAAAACGG
TGGAAAAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGCATCCGAATAAAGAGAATCTA
TTTTTGGATCCCAATCTTGAAAAGGATAGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAG
GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCAATGCAAAAGAAAATCAACA
ATATCATTAATCTGAATCAGG
Found at i:2419387 original size:159 final size:158
Alignment explanation
Indices: 2418751--2419401 Score: 452
Period size: 159 Copynumber: 4.1 Consensus size: 158
2418741 TCCCGAAAAG
* * *
2418751 AATGG-GGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGGT-ATGTATCCTAATGAAGA
1 AATGGTGGAAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAAT-ATCATGTATCCTAATGAAGA
*
2418814 GAATATGTTT-TCGGATCCCAATCTTGAAAAGAATGGAAATTGTTAC-AGAATCGATGCTTGTCT
64 GAATATGTTTAT-GGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
*
2418877 TATTTAAGGGATGAACTTTGATTTTAAGGAA
128 TATTTAAGGGATAAACTTTGATTTTAAGGAA
** * * * * * ** ** * *
2418908 AA-CATGACAAAGAAATGATTTCCATGCAAAAGGAACTCATCAATATCAT-TAATCTTAATGAGG
1 AATGGTG-GAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGT-ATCCTAATGAAG
* * ** * ** * * * * *
2418971 AGAATATGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGATTAATACTAGAATCTACGTTTGG
63 AGAATATGTTTATGGAT-CCCAATCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGT
* * * * *
2419034 CTCATTTGAGGCATAAACTTAGACTTTACA--AA
126 CTTATTTAAGGGATAAACTTTGATTTTA-AGGAA
* * * *
2419066 AATTGGTGGGAAA-AAAAGCCTTTCTTGCGAAACTAAAGCACCAATATCGTGTATCCTAAT-AAG
1 AA-TGGT-GGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATGAAG
* * * * * * * *
2419129 AAGACTATGTTTAAGGAGCCTAATCTTGAAAAGAATAGG-GAATAG-TATGAGTATTC-ATGTTT
63 -AGAATATGTTTATGGATCCCAATCTTGAAAAGAAT-GGAG-ATTGTTACGAG-AATCGATGCTT
* * * ***
2419191 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
124 GTCTTATTTAAGGGATAAACTTTGATTTTAAGGAA
* * * * *
2419226 AATGGTGGAAAGAAAAGCTTTTCTTTCAGCACCAAAGTATCAATGTCATGTACCCTAATGAAGAG
1 AATGGTGGAAAGAAAAGCTTTTCTTGCA-AACCAAAGCATCAATATCATGTATCCTAATGAAGAG
* * * *
2419291 AATGTGTTTTTGGATCCCAATCTTGGAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTTTTA
65 AATATGTTTATGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTA
*
2419356 TTTAAGGGATGAACTTTGATTTTAAGGAA
130 TTTAAGGGATAAACTTTGATTTTAAGGAA
*
2419385 AATAGG-GCAAAGAAAAG
1 AAT-GGTGGAAAGAAAAG
2419402 ATTTCCACGC
Statistics
Matches: 362, Mismatches: 103, Indels: 56
0.69 0.20 0.11
Matches are distributed among these distances:
157 10 0.03
158 87 0.24
159 239 0.66
160 25 0.07
161 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (158 bp):
AATGGTGGAAAGAAAAGCTTTTCTTGCAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGA
ATATGTTTATGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
TTAAGGGATAAACTTTGATTTTAAGGAA
Found at i:2424661 original size:24 final size:24
Alignment explanation
Indices: 2424628--2424718 Score: 70
Period size: 24 Copynumber: 4.1 Consensus size: 24
2424618 GTCATCCCTC
* * * *
2424628 CTCTTTCTATTATCTCTCCTGTCT
1 CTCTTCCTATCATCCCTCCTATCT
2424652 CTCTTCCTATCATCCCTCCTA--T
1 CTCTTCCTATCATCCCTCCTATCT
* *
2424674 CTC-TACTATC-T--CTCCTGTCT
1 CTCTTCCTATCATCCCTCCTATCT
*
2424694 CTC-TCCTATCATCCCTCCTCTCT
1 CTCTTCCTATCATCCCTCCTATCT
2424717 CT
1 CT
2424719 TCTTTCTCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
18 5 0.09
20 11 0.20
21 7 0.13
22 4 0.07
23 10 0.19
24 17 0.31
ACGTcount: A:0.10, C:0.43, G:0.02, T:0.45
Consensus pattern (24 bp):
CTCTTCCTATCATCCCTCCTATCT
Found at i:2424666 original size:42 final size:41
Alignment explanation
Indices: 2424613--2424727 Score: 167
Period size: 42 Copynumber: 2.8 Consensus size: 41
2424603 TTCTCTCCTC
* * *
2424613 CTCCTGTCATCCCTCCTCTTTCTATTATCTCTCCTGTCTCT
1 CTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCT
*
2424654 CTTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCTCT
1 C-TCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCT
* *
2424696 CTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTATCATCCCTCCTCTCTCTACTATCTCT
2424728 TTGAGGGCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 29 0.44
42 37 0.56
ACGTcount: A:0.09, C:0.43, G:0.03, T:0.45
Consensus pattern (41 bp):
CTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCT
Found at i:2425493 original size:17 final size:18
Alignment explanation
Indices: 2425467--2425504 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
2425457 CTAGTTTTTT
2425467 TTTC-TCTTTTTGTATTC
1 TTTCTTCTTTTTGTATTC
*
2425484 TTTCTTTTTTTTTGTATTC
1 TTTC-TTCTTTTTGTATTC
2425503 TT
1 TT
2425505 GAAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.05, C:0.13, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTCTTCTTTTTGTATTC
Found at i:2427247 original size:13 final size:14
Alignment explanation
Indices: 2427220--2427247 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2427210 ATTTTTTTTC
2427220 AAGAATACAAAAAA
1 AAGAATACAAAAAA
2427234 AAGAATACAAAAAA
1 AAGAATACAAAAAA
2427248 GAGAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.07, G:0.07, T:0.07
Consensus pattern (14 bp):
AAGAATACAAAAAA
Found at i:2427879 original size:42 final size:43
Alignment explanation
Indices: 2427814--2427933 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 43
2427804 ACTTGCCCTC
* * *
2427814 AAAGAGAAAG-AGAGACAGGAGGGATAATAGGAGGAGAGATA-
1 AAAGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAGAGATAG
* * *
2427855 AAAGAGATAGTAGAGATAGAAGGGATGATAGAAGGAGAGATAG
1 AAAGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAGAGATAG
*
2427898 GAA-AGATAGTAGAGAAAGGAGGGATGATAGGAGGAG
1 AAAGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAG
2427934 GAGCGAAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 9 0.13
42 57 0.84
43 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.40, T:0.11
Consensus pattern (43 bp):
AAAGAGATAGTAGAGAAAGGAGGGATGATAGGAGGAGAGATAG
Found at i:2428485 original size:13 final size:13
Alignment explanation
Indices: 2428467--2428493 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2428457 CTATCAAAGT
2428467 AGAAGCACAACTC
1 AGAAGCACAACTC
2428480 AGAAGCACAACTC
1 AGAAGCACAACTC
2428493 A
1 A
2428494 AAAGAAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (13 bp):
AGAAGCACAACTC
Found at i:2431637 original size:12 final size:12
Alignment explanation
Indices: 2431620--2431652 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
2431610 CATGTCACCC
2431620 ACAAACAGATGG
1 ACAAACAGATGG
2431632 ACAAACAGATGG
1 ACAAACAGATGG
2431644 ACAAACAGA
1 ACAAACAGA
2431653 GGTTGTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.55, C:0.18, G:0.21, T:0.06
Consensus pattern (12 bp):
ACAAACAGATGG
Found at i:2433423 original size:159 final size:158
Alignment explanation
Indices: 2432788--2435068 Score: 524
Period size: 158 Copynumber: 14.4 Consensus size: 158
2432778 TATGGAAATA
* * * *
2432788 TTTTCTTTGCC-CTATATTCTTTAAAATCAAAGTTCA-CCCCTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTTCCACCATATT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * *
2432851 CACAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTTATTCGGATACATG
65 CGCAACAATCTCCATTCTTTTCAAGATTGGCA-CCAAAAACACATTCCCTTCATTAGGATACATG
** *
2432916 ACATTGATCCTTTGGTGTCGCAAGAACAGC
129 ACATTGATGTTTTGGTGTCGCAAGAAAAGC
* ** * *
2432946 TTTTC-TTTCCACCGT-TTTTGATAGAAA-CAAAGTTTGTCTCTTAAATAAGACAAATAT-GAAT
1 TTTTCTTTTCCACCATATTTT--TA-AAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-AT
* * * * * * * *
2433007 ACT--CATACTATTCCCCATTTTTTTCAAGATTAGGCACCATAAACATAGT-CTTCTCATTAGGA
62 TCTCGCA-AC-AATCTCCATTCTTTTCAAGATT-GGCACCAAAAACACATTCCCT-TCATTAGGA
** * * *
2433069 TACCCGATATT-A-GTGTTTGGTTTCGCAAGAAATGC
123 TACATGACATTGATGT-TTTGGTGTCGCAAGAAAAGC
* * * * * * * * * * *
2433104 -TAT-TTTCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCT
1 TTTTCTTTTCCACCATATTTT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* ***** * * * * * * *
2433167 AGTTTTGATAAT-CATTCTTTTTC-TGATTAGCACTATAAACACATTCTCC-TCCTTAAGATTA-
65 CGCAACAAT-CTCCATTC-TTTTCAAGATTGGCACCAAAAACACATTC-CCTTCATTAGGA-TAC
* * * * * *
2433228 ATGATATTGATGATTTT-CTTTTGCATGAAAATC
126 ATGACATTGATG-TTTTGGTGTCGCAAGAAAAGC
* *
2433261 TTTTCTTTTCC-CTATATTCTTCAAAATCAAAGTTCATCCCTTAAATAAGACAAGA-ATCGATTC
1 TTTTCTTTTCCACCATATT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-ACATCGATTC
*
2433324 TCGCAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAT
64 TCGCAACAATCTCCATTCTTTTCAAGATTGGCA-CCAAAAACACATTCCCTTCATTAGGATACAT
*
2433389 GACATTGATGTTTTGGTGTCACAAGAAAAGC
128 GACATTGATGTTTTGGTGTCGCAAGAAAAGC
* * * * *** * * *
2433420 TTTTC-TTTCTACCGTTTTTGTTAGAATCAAAGTTTGGCTCTTAAATAAGACCAACAT-GAATAC
1 TTTTCTTTTCCACCATATTT-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * ** * * *
2433483 T--CATACTATTCCCCATTCTTTTTAAGATTAAGCACCTTAAACATAAT-CTTCTCATTAGGATA
64 TCGCA-AC-AATCTCCATTCTTTTCAAGATT-GGCACCAAAAACACATTCCCT-TCATTAGGATA
** ** * * * *
2433545 CGCGTTATTGGTGCTTTGGTTTCGCAAGAAAGGC
125 CATGACATTGATGTTTTGGTGTCGCAAGAAAAGC
* * * * * * * * * * ** *
2433579 -TTT-TTTCCCACCAAATTATGTAAAGTCAGAGTTCGTGCCTCAAATGAGGCAAATGTGGATTCT
1 TTTTCTTTTCCACCATATT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * ** * ** * * * *
2433642 AGTATTAATCTTCATTCATTTT-GTGATTAGGCACTATAAACATATTGTCCTT-ATTCA-GATTA
65 CGCAACAATCTCCATTC-TTTTCAAGATT-GGCACCAAAAACACATT-CCCTTCATT-AGGA-TA
* * * * * * *
2433704 -ATGATATTGATAATTTT-TTTTTGCATGAAAATC
125 CATGACATTGAT-GTTTTGGTGTCGCAAGAAAAGC
** * * * * * * *
2433737 TTCGCTTTGCC-CTATTTTTCTTAAAATCAAAGTTTATCCCATAAATAAGATAAGCATCGATTCT
1 TTTTCTTTTCCACCATATTT-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * **
2433801 CGTAACAATCTCCATTCTTTACAAGATTGGGATCTAAAAACACATTGTCTTCATTAGGATACATG
65 CGCAACAATCTCCATTCTTTTCAAGATTGGCA-CCAAAAACACATTCCCTTCATTAGGATACATG
* * * *
2433866 GCATTGATGCTATGGTGTCGCAAAAAAAGC
129 ACATTGATGTTTTGGTGTCGCAAGAAAAGC
* * ** * * *
2433896 TTTTC-TTTCCATCAT-TTTTAATAGAATCAAAGTTTGTCTCTTTAATAAGTCAAACA-CGATTA
1 TTTTCTTTTCCACCATATTTT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATT-
* * * * * * *** * * *
2433958 CT--CATACTATTCCCCACTCTTTTTATGATTAGGCACCATAAATGTAGT-CTTCTCATAAGGAT
63 CTCGCA-AC-AATCTCCATTCTTTTCAAGATT-GGCACCAAAAACACATTCCCT-TCATTAGGAT
* * * * * * *
2434020 GCACGA-ATTTGATGCTCTAGCT-TCACAAGAAAGGC
124 ACATGACA-TTGATG-TTTTGGTGTCGCAAGAAAAGC
* * * * * * * * *
2434055 -TTTC-TTCCCACCA-ATTTTCATAAAGTCTAAGTTCGTGCCTCAAATAAGGCAAACGTGGATTC
1 TTTTCTTTTCCACCATATTTT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * ** * ** ** * *
2434117 TAGTATTAATCTTCATTCATTTT-GTGATTAGGCATTATAAACACATTCTCC-TCATTAAGATTA
64 TCGCAACAATCTCCATTC-TTTTCAAGATT-GGCACCAAAAACACATTC-CCTTCATTAGGA-TA
* * * ** * * *
2434180 -ATGATATTGATAATTTT--TTTTACATGGAAATC
125 CATGACATTGAT-GTTTTGGTGTCGCAAGAAAAGC
** * * * *
2434212 TTCCCTTTGCC-CTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTTCCACCATATT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT
* * * * * *
2434276 CGTAACAATCTTCATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATGCAAG
65 CGCAACAATCTCCATTCTTTTCAAGATTGGCA-CCAAAAACACATTCCCTTCATTAGGATACATG
* * *
2434341 GCATTTTGATGCTATGGTGTCGCAAGAAAAGC
129 ACA--TTGATGTTTTGGTGTCGCAAGAAAAGC
* * * ** * * *
2434373 TTTTCTTTT-CACCGT-TTTTGATAGATCAAAGTTTGTCTCTTAAAGAAGACAAACAT-GAATAC
1 TTTTCTTTTCCACCATATTTTTA-AAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC
* * * * * *** * * * *
2434435 T--CATACTATTCCCCATTCTTTTTAGGATTAGGCACCATAAATGTAGT-CTTCTCATAAGGATG
64 TCGCA-AC-AATCTCCATTCTTTTCAAGATT-GGCACCAAAAACACATTCCCT-TCATTAGGATA
* * * * * *
2434497 CACGATATTGATGCTTTGGTTTCACAAGAAAGGC
125 CATGACATTGATGTTTTGGTGTCGCAAGAAAAGC
** * * * * * * * * * *
2434531 -TTTC-TACCCATCA-ATTTTCGTAAAGTCTAAGTTCATGCCTCAAGTGAGCCAAACGTGGATTC
1 TTTTCTTTTCCACCATATTTT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* *** * * ** * * *
2434593 -CAGTATGGATTTTCATTCATTTT-GTGATTAGGCACTACAAACACATTCTCC-TCATTAAGATT
64 TC-GCAACAATCTCCATTC-TTTTCAAGATT-GGCACCAAAAACACATTC-CCTTCATTAGGA-T
* * * * * *
2434655 A-ATGATATTGATGATTTT-GTTTTGCATTG-ATATC
124 ACATGACATTGATG-TTTTGGTGTCGCA-AGAAAAGC
* * * * **
2434689 TTTTCTTTGCC-CTAT-TTTACTTAATATCCAAGTTCATCCCTTAAATAAGACATGCATCGATTC
1 TTTTCTTTTCCACCATATTT--TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
* * * *
2434752 TAGTAACAATCTCCATTCGTTTCAGGATTGAG-ATCCAAAAACACATTCCCTTCATTAGGATACA
64 TCGCAACAATCTCCATTCTTTTCAAGATTG-GCA-CCAAAAACACATTCCCTTCATTAGGATACA
*
2434816 TGACATTGATGCTTTGGTGTCGCAAGAAAAGC
127 TGACATTGATGTTTTGGTGTCGCAAGAAAAGC
* * * * * * *
2434848 -TTTC-TTTCCTCTAT-TTTTGATAAAATCAAAGTTTATCTCTTAAGTAGGACAAACAT-GAATA
1 TTTTCTTTTCCACCATATTTT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATT
* * *** * * *
2434909 CT--CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAATGTAAT-CTTCTCATAAGGAT
63 CTCGCA-AC-AATCTCCATTCTTTTCAAGATT-GGCACCAAAAACACATTCCCT-TCATTAGGAT
** * * * *
2434971 ACACAATATTGAAGCTTTGGTTTCGCAAGAAAAGC
124 ACATGACATTGATGTTTTGGTGTCGCAAGAAAAGC
* * * * * * * *
2435006 -TTTC-TTCCCACCA-ATTTTTATAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACCTAGATTC
1 TTTTCTTTTCCACCATATTTTTA-AAA-TCAAAGTTCATCCCTTAAATAAGACAAACATCGATTC
2435068 T
64 T
2435069 AGTATTGATC
Statistics
Matches: 1480, Mismatches: 500, Indels: 286
0.65 0.22 0.13
Matches are distributed among these distances:
156 36 0.02
157 116 0.08
158 663 0.45
159 538 0.36
160 106 0.07
161 21 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (158 bp):
TTTTCTTTTCCACCATATTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC
GCAACAATCTCCATTCTTTTCAAGATTGGCACCAAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGTTTTGGTGTCGCAAGAAAAGC
Found at i:2433857 original size:476 final size:475
Alignment explanation
Indices: 2432736--2435426 Score: 3567
Period size: 476 Copynumber: 5.7 Consensus size: 475
2432726 TTGTCATTAG
* * *
2432736 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTAGTATGGAAATATTTTCTTTGCCCT
1 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
* * **
2432801 ATATTCTTTAAAATCAAAGTTCA-CCCCTAAATAAGACAAGCATCGATTCTCACAACAATCTCCA
66 ATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* * *
2432865 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTTATTCGGATACATGACATTGATCCTTTG
130 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTG
* *
2432930 GTGTCGCAAGAACAGCTTTTCTTTCCACCGTTTTTGATAGAAACAAAGTTTGTCTCTTAAATAAG
195 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* *
2432995 ACAAATATGAATACTCATACTATTCCCCATT-TTTTTCAAGATTAGGCACCATAAACATAGTCTT
260 ACAAACATGAATACTCATACTATTCCCCATTCTTTTT-AAGATTAGGCACCATAAACGTAGTCTT
* * *
2433059 CTCATTAGGATACCCGATATT-AGTG-TTTGGTTTCGCAAGAAATGCTATT-TTCCCACCAAATT
324 CTCATAAGGATACACGATATTGA-TGCTTTGGTTTCGCAAGAAAGGCT-TTCTTCCCACCAAATT
* ** *
2433121 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTTTTGATAATCATTCTT
387 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTATTGATCTTCATTCAT
*
2433186 TTTCTGATTA-GCACTATAAACAC
452 TTTGTGATTAGGCACTATAAACAC
* * * *
2433209 ATTCTCCTCCTTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTCCCT
1 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
* * *
2433274 ATATTCTTCAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGATTCTCGCAACAATCTCCA
66 ATTTTCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* *
2433339 TTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTG
130 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTG
* * * *
2433404 GTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGTTAGAATCAAAGTTTGGCTCTTAAATAAG
195 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
2433469 ACCAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAAGCACCTTAAACATAATCTTC
260 ACAAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAGGCACCATAAACGTAGTCTTC
* * * * * *
2433534 TCATTAGGATACGCGTTATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAAATTATG
325 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAATTTTG
* * *
2433599 TAAAGTC-AGAGTTCGTGCCTCAAATGAGGCAAATGTGGATTCTAGTATTAATCTTCATTCATTT
390 TAAAGTCTA-AGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTATTGATCTTCATTCATTT
*
2433663 TGTGATTAGGCACTATAAACAT
454 TGTGATTAGGCACTATAAACAC
* * * * * **
2433685 ATTGTCCTTATTCAGATTAATGATATTGATAATTTTTTTTTGCATGAAAATCTTCGCTTTGCCCT
1 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
* * *
2433750 ATTTTTCTTAAAATCAAAGTTTATCCCATAAATAAGATAAGCATCGATTCTCGTAACAATCTCCA
66 A-TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* * * * *
2433815 TTCTTTACAAGATTGGGATCTAAAAACACATTGTCTTCATTAGGATACATGGCATTGATGCTATG
130 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTG
* * * * *
2433880 GTGTCGCAAAAAAAGCTTTTCTTTCCATCATTTTTAATAGAATCAAAGTTTGTCTCTTTAATAAG
195 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * *
2433945 TCAAACACGATTACTCATACTATTCCCCACTCTTTTTATGATTAGGCACCATAAATGTAGTCTTC
260 ACAAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAGGCACCATAAACGTAGTCTTC
* * * * *
2434010 TCATAAGGATGCACGA-ATTTGATGCTCTAGCTTCACAAGAAAGGCTTTCTTCCCACC-AATTTT
325 TCATAAGGATACACGATA-TTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAATTTT
* * * *
2434073 CATAAAGTCTAAGTTCGTGCCTCAAATAAGGCAAACGTGGATTCTAGTATTAATCTTCATTCATT
389 -GTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTATTGATCTTCATTCATT
*
2434138 TTGTGATTAGGCATTATAAACAC
453 TTGTGATTAGGCACTATAAACAC
* * **
2434161 ATTCTCCTCATTAAGATTAATGATATTGAT-AATTTTTTTTACATGGAAATCTTCCCTTTGCCCT
1 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
*
2434225 ATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTTCA
66 ATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* * * *
2434290 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATGCAAGGCATTTTGATGCTA
130 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACA--TTGATGCTT
* *
2434355 TGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAG-ATCAAAGTTTGTCTCTTAAAGA
193 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
2434419 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTTAGGATTAGGCACCATAAATGTAGTCT
258 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAGGCACCATAAACGTAGTCT
* * * *
2434484 TCTCATAAGGATGCACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTACCCATC-AATTT
323 TCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAATTT
* * * * *
2434548 TCGTAAAGTCTAAGTTCATGCCTCAAGTGAGCCAAACGTGGATTCCAGTATGGATTTTCATTCAT
388 T-GTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTATTGATCTTCATTCAT
*
2434613 TTTGTGATTAGGCACTACAAACAC
452 TTTGTGATTAGGCACTATAAACAC
* * *
2434637 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTGTTTTGCATTGATATCTTTTCTTTGCCCT
1 ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * *
2434702 ATTTTACTTAATATCCAAGTTCATCCCTTAAATAAGACATGCATCGATTCTAGTAACAATCTCCA
66 ATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* * * *
2434767 TTCGTTTCAGGATTGAGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
130 TTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTG
* ** * * * *
2434832 GTGTCGCAAGAAAAGC-TTTCTTTCCTCTATTTTTGATAAAATCAAAGTTTATCTCTTAAGTAGG
195 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
2434896 ACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAATGTAATCTTC
260 ACAAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAGGCACCATAAACGTAGTCTTC
* * * * *
2434961 TCATAAGGATACACAATATTGAAGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTA
325 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAATTTTG
* * * *
2435026 TAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACCTAGATTCTAGTATTGATCTTCATGCATTTT
390 TAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTATTGATCTTCATTCATTTT
2435091 GTGATTAGGCACTATAAACAC
455 GTGATTAGGCACTATAAACAC
* * * * *
2435112 ATTCTCCTTATTAAAGATTAATGATATTGATGACTTTCTTTTGCATGGAAATCTTTTCTTAGCCT
1 ATTCTCCTCATT-AAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * *
2435177 TATTTTCCTTAAAAACAAAGTTCATCCCTTTAATAAGACGAGCATAGATTCTCATAACAATCTCC
65 TATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC
* * *
2435242 ATTCTATTCAAGATTGGGAACC-AAAA-A-A------T-ATTAGGATACATGACATTAATGCTTT
129 ATTCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTT
* * * ** * * *
2435297 GGTGTTGCAAGAAAAGCTTTTTTTTCCACCGATTTCAAT-GAAATTAAAGTTTTTCTTTTAAATA
194 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAATA
* * * **
2435361 AGACAAACATGAATAGTCATACTAATCCCCATTATTTTCGAGATTAGGCACCATAAACGTAGTCT
258 AGACAAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAGGCACCATAAACGTAGTCT
2435426 T
323 T
2435427 GTCAGCAGGA
Statistics
Matches: 1961, Mismatches: 234, Indels: 52
0.87 0.10 0.02
Matches are distributed among these distances:
466 41 0.02
467 94 0.05
472 2 0.00
473 79 0.04
474 258 0.13
475 492 0.25
476 808 0.41
477 186 0.09
478 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (475 bp):
ATTCTCCTCATTAAGATTAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
ATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
TCTTTTCAAGATTGGGATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGG
TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
CAAACATGAATACTCATACTATTCCCCATTCTTTTTAAGATTAGGCACCATAAACGTAGTCTTCT
CATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAATTTTGT
AAAGTCTAAGTTCATGCCTCAAATGAGGCAAACGTGGATTCTAGTATTGATCTTCATTCATTTTG
TGATTAGGCACTATAAACAC
Found at i:2435656 original size:43 final size:44
Alignment explanation
Indices: 2435502--2435730 Score: 136
Period size: 42 Copynumber: 5.2 Consensus size: 44
2435492 GCAGGACACC
* * * * *
2435502 TTTTCCTTTTCCCCCTTGTCCACAAA-GAGTAGGACGCACTTC-
1 TTTTCCTTTTCTCCTTTATCCTCAAACGAGTAGGACGCATTTCG
* * * * * ** **
2435544 ATTTCCTTCTTTTCCCTTTTGTCCTCAAA-GAGCAAGACATATTTTA
1 TTTTCCTT-TTCT-CC-TTTATCCTCAAACGAGTAGGACGCATTTCG
*
2435590 TTTTCCTCTTTCT--TTTGTCCTCAAACG-GTAGGACGCATTTCG
1 TTTTCCT-TTTCTCCTTTATCCTCAAACGAGTAGGACGCATTTCG
2435632 TTTTCCTTTTCTCCTTTATCCTCAAA-GAGTAGGACGC-TCTTC-
1 TTTTCCTTTTCTCCTTTATCCTCAAACGAGTAGGACGCAT-TTCG
* * * *
2435674 ATTTCCTTCTTTTCCCTTCTAGTCCTC-AACGAGCAGGACACATTTCG
1 TTTTCCTT-TTCT-CCTT-TA-TCCTCAAACGAGTAGGACGCATTTCG
2435721 TTTTCCTTTT
1 TTTTCCTTTT
2435731 TTTCTTTGTC
Statistics
Matches: 145, Mismatches: 25, Indels: 30
0.73 0.12 0.15
Matches are distributed among these distances:
41 5 0.03
42 44 0.30
43 29 0.20
44 6 0.04
45 24 0.17
46 28 0.19
47 9 0.06
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.41
Consensus pattern (44 bp):
TTTTCCTTTTCTCCTTTATCCTCAAACGAGTAGGACGCATTTCG
Found at i:2436421 original size:61 final size:60
Alignment explanation
Indices: 2436245--2436472 Score: 230
Period size: 61 Copynumber: 3.8 Consensus size: 60
2436235 AGGTATGGGG
* * * *
2436245 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCAAAGCCCAC
* * * * *
2436306 ATGAGTTGGCT-GCACCTT-AGTGCTCAAAGAGCAGGACGTCTTTTTCTTTT-AAAGCCCAC
1 ACGAGTTGG-TGGCACTTTCAGTCCTCAAAGAGCAGGAC-ACCTTTTCTTTTCAAAGCCCAC
* * *
2436365 GCAAGTTGGTAGCAACTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGC-ACTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
* * * *
2436426 ACGAGTTGGTGGCACTTTTTACTTCTCAAAGAGCAGGACGCCTTTTC
1 ACGAGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGGACACCTTTTC
2436473 CTCTTCCCCC
Statistics
Matches: 136, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
58 1 0.01
59 34 0.25
60 25 0.18
61 75 0.55
62 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (60 bp):
ACGAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
Found at i:2436532 original size:45 final size:45
Alignment explanation
Indices: 2436483--2436722 Score: 187
Period size: 43 Copynumber: 5.5 Consensus size: 45
2436473 CTCTTCCCCC
* *
2436483 TTGTCCTCAAAGAGTAGGGCGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * *
2436528 TTGTCCTCAAAGAGCAAGACGCATTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * * *
2436570 TTGTCCTCAAAGGGCAGGAAGCATTTCGTTT--TCCTTTTCTCC-T
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * *
2436613 TTATCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * * *
2436658 CTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTT-TTTT-TC-T
1 -TTGTCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTCTTTTCCCTT
2436702 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2436723 TACTCTTTTT
Statistics
Matches: 154, Mismatches: 29, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.01
41 6 0.04
42 26 0.17
43 40 0.26
44 9 0.06
45 35 0.23
46 30 0.19
47 7 0.05
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2436720 original size:43 final size:43
Alignment explanation
Indices: 2436483--2436721 Score: 175
Period size: 42 Copynumber: 5.5 Consensus size: 43
2436473 CTCTTCCCCC
* * * * * *
2436483 TTGTCCTCAAAGAGTAGGGCGCACTTC-ATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTT-TTTT-TC-T
* * ** * *
2436528 TTGTCCTCAAAGAGCAAGACGCATTTTATTTTCCTCTTTCT-T
1 TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCT
* * *
2436570 TTGTCCTCAAAGGGCAGGA-AGCATTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACA-CATTTCGTTTTCCTTTTTTTCT
* * * *
2436613 TTATCCTCAAAGAGTAGGACGC-TCTTC-ATTTCCTTCTTTTCTCT
1 TTGTCCTCAAAGAGCAGGACACAT-TTCGTTTTCCTT-TTTT-TCT
2436657 TCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCT
1 T-T-GTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCT
2436702 TTGTCCTCGAAA-AGCAGGAC
1 TTGTCCTC-AAAGAGCAGGAC
2436722 GTACTCTTTT
Statistics
Matches: 153, Mismatches: 29, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
42 40 0.26
43 38 0.25
44 7 0.05
45 30 0.20
46 30 0.20
47 8 0.05
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCT
Found at i:2437306 original size:61 final size:59
Alignment explanation
Indices: 2437235--2437431 Score: 196
Period size: 61 Copynumber: 3.2 Consensus size: 59
2437225 CACCTTCCAA
* *
2437235 TCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAG
1 TCCTCAAAGAGCAGGACA-CTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCA-CTTTTAG
* * * * * * * *
2437296 TCCTTAAAGAGCAGGGCGCCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAG
1 TCCTCAAAGAGCAGGAC-ACTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCA-CTTTTAG
* * ** *
2437357 TCCTCAAAGACCAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGTACTTTTTAG
1 TCCTCAAAGAGCAGGACACTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCAC-TTTTAG
*
2437418 TCCTCAAATAGCAG
1 TCCTCAAAGAGCAG
2437432 CACGTCTTTT
Statistics
Matches: 108, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
60 7 0.06
61 101 0.94
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (59 bp):
TCCTCAAAGAGCAGGACACTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTAG
Found at i:2437441 original size:122 final size:122
Alignment explanation
Indices: 2437221--2437441 Score: 284
Period size: 122 Copynumber: 1.8 Consensus size: 122
2437211 GGACGAATTG
** * *
2437221 GTGGCACCTTCCAATCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAATCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* **
2437286 CAGCTTTTAGTCCTTAAAGAGCAGGGCGCCTTTTTCTTTTAAAGCCCACGCAAGTTA
66 CAGCTTTTAGTCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCACGCAAGTTA
* * **
2437343 GTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAATCCTCAAAGACCAGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGTG
* * *
2437407 GTA-CTTTTTAGTCCTCAAATAGCAGCACGTCTTTT
65 GCAGC-TTTTAGTCCTCAAAGAGCAGCACGCCTTTT
2437442 CCTCTTCCCC
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
121 7 0.08
122 76 0.92
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (122 bp):
GTGGCACCTTCCAATCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CAGCTTTTAGTCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCACGCAAGTTA
Done.