Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 14 of 16
Found at i:2437554 original size:42 final size:42
Alignment explanation
Indices: 2437453--2437692 Score: 150
Period size: 42 Copynumber: 5.5 Consensus size: 42
2437443 CTCTTCCCCC
* *
2437453 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTGTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-T-TTTT--CTT
2437498 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTT
1 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTT
* * * **
2437540 TTGTCCTCAAAGAGCGGGACGCA-TTTCGTTTTCCTTTTCTCCA
1 TTGTCCTCAAAGAGCAGGATGCACTTT-ATTTTCCTTTT-TCTT
* * * * * *
2437583 GTGTCTTTAAAGAGCAGGATGCTCTTCA-TTCCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC--TTTTT--CTT
* * * *
2437628 CTAGTCCTCAAAAAGCAGGA--CACGTTTTGTTTTCCTTTTTTTCT
1 -TTGTCCTCAAAGAGCAGGATGCAC--TTTATTTTCCTTTTTCT-T
2437672 TTGTCCTCGAAA-AGCAGGATG
1 TTGTCCTC-AAAGAGCAGGATG
2437693 TACTCTTTTT
Statistics
Matches: 150, Mismatches: 29, Indels: 32
0.71 0.14 0.15
Matches are distributed among these distances:
41 3 0.02
42 38 0.25
43 35 0.23
44 16 0.11
45 33 0.22
46 21 0.14
47 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTT
Found at i:2437793 original size:40 final size:40
Alignment explanation
Indices: 2437696--2437797 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 40
2437686 CAGGATGTAC
*
2437696 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATTT
*
2437737 TCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTT
2437779 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2437798 AAAGTGGGAC
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
40 19 0.35
41 21 0.38
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.45
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATTT
Found at i:2437820 original size:42 final size:42
Alignment explanation
Indices: 2437696--2437820 Score: 125
Period size: 40 Copynumber: 3.0 Consensus size: 42
2437686 CAGGATGTAC
*
2437696 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACA-CTTTCC-TTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCGGGACACCTTTCCATTT
* * *
2437737 TCTTTTTTCCTTTGTCCTCAAGGAGC--GAGACCTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCGGGACACCT-TTCCATTT
* *
2437779 TC-TTTTCCTTTGTCCTCAAAAAGTGGGACACCCTTTCCATTT
1 TCTTTTTCCTTTGTCCTCAAGAAGCGGGACA-CCTTTCCATTT
2437821 ATTTCCCTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
39 3 0.04
40 21 0.30
41 21 0.30
42 21 0.30
43 3 0.04
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.42
Consensus pattern (42 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCGGGACACCTTTCCATTT
Found at i:2438290 original size:61 final size:60
Alignment explanation
Indices: 2438190--2438405 Score: 261
Period size: 61 Copynumber: 3.5 Consensus size: 60
2438180 TGAGGAAGAA
* *
2438190 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * * * *
2438251 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * * **
2438312 TTAGTGGCACCTTTCAGTCCTCAAAGACCAGGACACATTTTCTTTTGGAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2438373 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2438406 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 5 0.04
61 125 0.96
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (60 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2438413 original size:122 final size:122
Alignment explanation
Indices: 2438193--2438413 Score: 336
Period size: 122 Copynumber: 1.8 Consensus size: 122
2438183 GGAAGAATTG
* * *
2438193 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2438258 CACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTTAAAGCCCACGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTTAAAGCCCACGCAAGTTA
* **
2438315 GTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2438379 GCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2438414 CCTCTTCCCC
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
121 6 0.07
122 82 0.93
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTTAAAGCCCACGCAAGTTA
Found at i:2438440 original size:38 final size:40
Alignment explanation
Indices: 2438389--2438496 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 40
2438379 GCACTTTTTA
2438389 GTCCTCAAAGAGCAGGATGCCTTTTCC-TC-TTCCCCCTT
1 GTCCTCAAAGAGCAGGATGCCTTTTCCTTCTTTCCCCCTT
* **
2438427 GTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGATG-CC-T--TTTCCTTC-TTTCCCCCTT
2438472 GTCCTCAAAGAGCAGGATGCACTTT
1 GTCCTCAAAGAGCAGGATGC-CTTT
2438497 ATTTTCCTCT
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
38 18 0.31
39 2 0.03
40 1 0.02
42 7 0.12
43 2 0.03
44 2 0.03
45 26 0.45
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (40 bp):
GTCCTCAAAGAGCAGGATGCCTTTTCCTTCTTTCCCCCTT
Found at i:2438526 original size:42 final size:40
Alignment explanation
Indices: 2438384--2438530 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 40
2438374 TGGTGGCACT
*
2438384 TTTTAGTCCTCAAAGAGCAGGATGCC---TTTTCCTCTTCCC
1 TTTT-GTCCTCAAAGAGCAGGATGCCTTATTTTCCTCTT-TC
** *
2438423 CCTTGTCCTCAAAGAGCAGGACGCCCTTCA-TTTCCTTCTTTTCCC
1 TTTTGTCCTCAAAGAGCAGGATG-CCTT-ATTTTCC-TC-TTT--C
2438468 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTC
1 TTTTGTCCTCAAAGAGCAGGATGC-C-TTATTTTCCTCTTTC
2438510 TTTTGTCCTCAAAGAGCAGGA
1 TTTTGTCCTCAAAGAGCAGGA
2438531 CGCATTTCGT
Statistics
Matches: 89, Mismatches: 7, Indels: 21
0.76 0.06 0.18
Matches are distributed among these distances:
38 18 0.20
39 4 0.04
42 27 0.30
43 2 0.02
44 6 0.07
45 25 0.28
46 7 0.08
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (40 bp):
TTTTGTCCTCAAAGAGCAGGATGCCTTATTTTCCTCTTTC
Found at i:2438544 original size:42 final size:42
Alignment explanation
Indices: 2438425--2438664 Score: 166
Period size: 43 Copynumber: 5.5 Consensus size: 42
2438415 CTCTTCCCCC
** *
2438425 TTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCTTTTCCTTC-TTT--CTT
* *
2438470 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCA-TTTCTTTTCCTTCTTTCTT
* **
2438512 TTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT-TAATCCA
1 TTGTCCTCAAAGAGCAGGACGCATTTC-TTTTCCTTCT-TTCTT
* * * * *
2438555 TTGTCCTTAACGAGCAGGATGC-TCTTCATTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCTTTTCC-TTCTTT--CTT
* * * *
2438600 CTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTT
1 -TTGTCCTCAAAGAGCAGGACGCATTTC-TTTTCC-TTCTTTCTT
2438645 TT-TCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2438665 TACTCATTTT
Statistics
Matches: 155, Mismatches: 27, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
41 3 0.02
42 38 0.25
43 40 0.26
44 8 0.05
45 27 0.17
46 26 0.17
47 13 0.08
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.39
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCTTTTCCTTCTTTCTT
Found at i:2438639 original size:46 final size:43
Alignment explanation
Indices: 2438429--2438640 Score: 128
Period size: 42 Copynumber: 4.8 Consensus size: 43
2438419 TCCCCCTTGT
** * * *
2438429 CCTCAAAGAGCAGGACGCCCTTC-ATTTCCTTCTTTTCCCTTTTGT
1 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTT-TTTT-CC-ATTGA
* * * ** *
2438474 CCTCAAAGAGCAGGATGCACTTT-ATTTTCC-TCTTTCTTTTGT
1 CCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTTTCCATTGA
** *
2438516 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTAATCCATTGT
1 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTTTCCATTGA
* * * * *
2438559 CCTTAACGAGCAGGATGC-TCTTC-ATTTCCTTTTTTTCCCTTCTAGA
1 CCTCAAAGAGCAGGACGCAT-TTCGTTTTCC-TTTTTT-CCAT-T-GA
*
2438605 CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTT
1 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTTT
2438641 TCTTTTTCCT
Statistics
Matches: 130, Mismatches: 26, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
41 3 0.02
42 35 0.27
43 30 0.23
44 6 0.05
45 19 0.15
46 31 0.24
47 6 0.05
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.39
Consensus pattern (43 bp):
CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTTTCCATTGA
Found at i:2439243 original size:61 final size:61
Alignment explanation
Indices: 2439162--2439375 Score: 281
Period size: 61 Copynumber: 3.5 Consensus size: 61
2439152 TGGGGACGAA
*
2439162 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
* * * * *
2439223 TTGGTGGCAGCTTTTAGTCCTCAAAGAGCAGGGCGTCTTTTTCTTTTAAAGCCCAGGCA--AG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCA--CATGAG
* * *
2439284 TTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA-CCTTTTCTTTTCCAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACATGAG
* *
2439345 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAG
2439376 CATGCCTTTT
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
59 2 0.02
60 6 0.05
61 121 0.92
63 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
Found at i:2439385 original size:122 final size:122
Alignment explanation
Indices: 2439165--2439385 Score: 347
Period size: 122 Copynumber: 1.8 Consensus size: 122
2439155 GGACGAATTG
*
2439165 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
** *
2439230 CAGCTTTTAGTCCTCAAAGAGCAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTA
66 CAGCTTTTAGTCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
* *
2439287 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCCAAGCCCACATGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTC-TTTCAAAGCCCACATGAGTTGGTG
*
2439351 GCA-CTTTTTAGTCCTCAAAGAGCAGCATGCCTTTT
65 GCAGC-TTTTAGTCCTCAAAGAGCAGCACGCCTTTT
2439386 CTTCTTCCCC
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
121 6 0.07
122 84 0.93
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
CAGCTTTTAGTCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
Found at i:2439498 original size:42 final size:42
Alignment explanation
Indices: 2439397--2439523 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
2439387 TTCTTCCCCC
*
2439397 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
*
2439442 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
*
2439484 TTGTCCTCAAAGAGCAGGACGTA-TTTCATTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2439524 CCATTGTCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
41 8 0.11
42 32 0.42
44 3 0.04
45 28 0.37
46 5 0.07
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2439555 original size:43 final size:41
Alignment explanation
Indices: 2439397--2439563 Score: 142
Period size: 42 Copynumber: 3.9 Consensus size: 41
2439387 TTCTTCCCCC
* * * *
2439397 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGATGCTCTTCATTT--TCCTTTT--CTA
* * *
2439442 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGATGCTCTTCATTTTCCT-TTTCTA
* *
2439484 TTGTCCTCAAAGAGCAGGACG-TATTTCATTTTCCTTTTCTCCA
1 TTGTCCTCAAAGAGCAGGATGCT-CTTCATTTTCCTTTTCT--A
*
2439527 TTGTCAGT-AAAGAGCAGGATGCTCTTCA-TTTCCTTTT
1 TTGTC-CTCAAAGAGCAGGATGCTCTTCATTTTCCTTTT
2439564 TTTCCCTTCT
Statistics
Matches: 105, Mismatches: 11, Indels: 15
0.80 0.08 0.11
Matches are distributed among these distances:
41 5 0.05
42 42 0.40
43 24 0.23
44 5 0.05
45 29 0.28
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (41 bp):
TTGTCCTCAAAGAGCAGGATGCTCTTCATTTTCCTTTTCTA
Found at i:2439559 original size:42 final size:43
Alignment explanation
Indices: 2439397--2439636 Score: 204
Period size: 43 Copynumber: 5.5 Consensus size: 43
2439387 TTCTTCCCCC
*
2439397 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTT-TTCT-CC-T
* *
2439442 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCT--T
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCT-TTTCTCCT
* * *
2439484 TTGTCCTCAAAGAGCAGGACGTATTTCATTTTCCTTTTCTCCA
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCCT
* * * *
2439527 TTGTCAGT-AAAGAGCAGGATGCTCTTCA-TTTCCTTTTTTTCCCT
1 TTGTC-CTCAAAGAGCAGGACGCACTTCATTTTCC-TTTTCT-CCT
* * * * * *
2439571 TCTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCT
1 T-T-GTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCCT
2439616 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2439637 TACTCTTTTT
Statistics
Matches: 158, Mismatches: 25, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
41 5 0.03
42 37 0.23
43 39 0.25
44 8 0.05
45 31 0.20
46 32 0.20
47 6 0.04
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCCT
Found at i:2440352 original size:122 final size:122
Alignment explanation
Indices: 2440135--2440355 Score: 329
Period size: 122 Copynumber: 1.8 Consensus size: 122
2440125 GGACAAATTG
* * * *
2440135 GTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAAAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
* **
2440200 CAGCTTTTAGCCCTTAAAGAGCAGGGCGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
66 CAGCTTTTAGCCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
*
2440257 GTGGCACCTTTCAGTCCTCAAAAAGCAGGACACC-TTTTCTTTTCAAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAAAGCAGGACACCTTTTTC-TTTCAAAGCCCACACGAGTTGGTG
*
2440321 GCA-CTTTTTAGTCCTCAAAGAGCAGCACGCCTTTT
65 GCAGC-TTTTAGCCCTCAAAGAGCAGCACGCCTTTT
2440356 CCTCTTCCCC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
121 6 0.07
122 82 0.93
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAAAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
CAGCTTTTAGCCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
Found at i:2440354 original size:61 final size:61
Alignment explanation
Indices: 2440132--2440356 Score: 249
Period size: 61 Copynumber: 3.7 Consensus size: 61
2440122 TGGGGACAAA
* * * *
2440132 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCAAAGCCCACACGAG
* * * * * * *
2440193 TTGGTGGCAGCTTTTAGCCCTTAAAGAGCAGGGCGCCTTTTTCTTTT-AAAGCCCA-AGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCACA-CGAG
* *
2440254 TTAGTGGCACCTTTCAGTCCTCAAAAAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAG
* * * *
2440315 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGCACGCCTTTTC
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTC
2440357 CTCTTCCCCC
Statistics
Matches: 133, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
60 10 0.08
61 114 0.86
62 8 0.06
63 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2440468 original size:42 final size:42
Alignment explanation
Indices: 2440367--2440606 Score: 159
Period size: 42 Copynumber: 5.5 Consensus size: 42
2440357 CTCTTCCCCC
* *
2440367 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-T-TTTT--CTT
2440412 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTT
1 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTT
* * * **
2440454 TTGTCCTCAAAGAGCGGGACGCA-TTTCGTTTTCCTTTTCTCCA
1 TTGTCCTCAAAGAGCAGGATGCACTTT-ATTTTCCTTTT-TCTT
* * * * * *
2440497 GTGTCTTTAAAGAGCAGGATGCTCTTCA-TTCCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC--TTTTT--CTT
* * *
2440542 CTAGTCCTCAAAGAGCAGGA--CACGTTTTGTTTTCCTTTTTTTCT
1 -TTGTCCTCAAAGAGCAGGATGCAC--TTTATTTTCCTTTTTCT-T
2440586 TTGTCCTCGAAA-AGCAGGATG
1 TTGTCCTC-AAAGAGCAGGATG
2440607 TACTCTTTTT
Statistics
Matches: 151, Mismatches: 28, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
41 3 0.02
42 38 0.25
43 35 0.23
44 16 0.11
45 33 0.22
46 22 0.15
47 4 0.03
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTT
Found at i:2440707 original size:40 final size:40
Alignment explanation
Indices: 2440610--2440711 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 40
2440600 CAGGATGTAC
*
2440610 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATTT
*
2440651 TCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTT
2440693 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2440712 AAAGTGGGAC
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
40 19 0.35
41 21 0.38
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.45
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATTT
Found at i:2440734 original size:42 final size:42
Alignment explanation
Indices: 2440610--2440734 Score: 125
Period size: 40 Copynumber: 3.0 Consensus size: 42
2440600 CAGGATGTAC
*
2440610 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACA-CTTTCC-TTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCGGGACACCTTTCCATTT
* * *
2440651 TCTTTTTTCCTTTGTCCTCAAGGAGC--GAGACCTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCGGGACACCT-TTCCATTT
* *
2440693 TC-TTTTCCTTTGTCCTCAAAAAGTGGGACACCCTTTCCATTT
1 TCTTTTTCCTTTGTCCTCAAGAAGCGGGACA-CCTTTCCATTT
2440735 ATTTCCCTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
39 3 0.04
40 21 0.30
41 21 0.30
42 21 0.30
43 3 0.04
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.42
Consensus pattern (42 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCGGGACACCTTTCCATTT
Found at i:2441204 original size:61 final size:60
Alignment explanation
Indices: 2441104--2441318 Score: 254
Period size: 61 Copynumber: 3.5 Consensus size: 60
2441094 TGAGGAAGAA
* *
2441104 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
2441165 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * **
2441225 TTAGTGGCACCTTTCAGTCCTCAAAGA-CGAGGACACATTTTCTTTTGGAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGC-AGGACTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2441286 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2441319 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
59 6 0.05
60 43 0.33
61 80 0.62
62 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (60 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2441326 original size:121 final size:121
Alignment explanation
Indices: 2441107--2441326 Score: 327
Period size: 121 Copynumber: 1.8 Consensus size: 121
2441097 GGAAGAATTG
* *
2441107 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2441172 CACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTAAAGCCCACGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
* **
2441228 GTGGCACCTTTCAGTCCTCAAAGA-CGAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGT
1 GTGGCACCTTCCAGTCCTCAAAGAGC-AGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGT
* *
2441291 GGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
64 GGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2441327 CCTCTTCCCC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
120 7 0.08
121 81 0.92
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (121 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
Found at i:2441353 original size:38 final size:40
Alignment explanation
Indices: 2441302--2441409 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 40
2441292 GCACTTTTTA
2441302 GTCCTCAAAGAGCAGGATGCCTTTTCC-TC-TTCCCCCTT
1 GTCCTCAAAGAGCAGGATGCCTTTTCCTTCTTTCCCCCTT
* **
2441340 GTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGATG-CC-T--TTTCCTTC-TTTCCCCCTT
2441385 GTCCTCAAAGAGCAGGATGCACTTT
1 GTCCTCAAAGAGCAGGATGC-CTTT
2441410 ATTTTCCTCT
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
38 18 0.31
39 2 0.03
40 1 0.02
42 7 0.12
43 2 0.03
44 2 0.03
45 26 0.45
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (40 bp):
GTCCTCAAAGAGCAGGATGCCTTTTCCTTCTTTCCCCCTT
Found at i:2441387 original size:45 final size:45
Alignment explanation
Indices: 2441338--2441586 Score: 182
Period size: 43 Copynumber: 5.7 Consensus size: 45
2441328 CTCTTCCCCC
*
2441338 TTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2441383 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * * *
2441425 TTGTCCTCAAAGAGCCGGACGCATTTCGTTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * * *
2441468 TTGTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * * *
2441513 CTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCCTT-TTTT--CTT
1 -TTGTCCTCAAAGAGCAGGACGCACTTC-ATTT-CCTTCTTTTCCCTT
*
2441558 TT-TCCTCGAAA-AGCAGGACGTAC-TCATTT
1 TTGTCCTC-AAAGAGCAGGACGCACTTCATTT
2441587 TCACTTTGTC
Statistics
Matches: 156, Mismatches: 35, Indels: 30
0.71 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 9 0.06
42 28 0.18
43 37 0.24
44 10 0.06
45 36 0.23
46 24 0.15
47 7 0.04
48 4 0.03
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.39
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2441500 original size:42 final size:42
Alignment explanation
Indices: 2441302--2441533 Score: 163
Period size: 42 Copynumber: 5.4 Consensus size: 42
2441292 GCACTTTTTA
* * * *
2441302 GTCCTCAAAGAGCAGGATGC-C-T--TTTCCTCTTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTTTCTCCTTT
* *
2441340 GTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTT-TTCT-CC-TTT
* * *
2441385 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCT--TTT
1 GTCCTCAAAGAGCAGGACGCTCTTCA-TTTCCT-TTTCTCCTTT
* * *
2441427 GTCCTCAAAGAGCCGGACGCAT-TTCGTTTTCCTTTTCTCCATT
1 GTCCTCAAAGAGCAGGACGC-TCTTC-ATTTCCTTTTCTCCTTT
* * * *
2441470 GTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTTCT
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCC-TTTTCT-CCTT-T
*
2441515 AGACCTCAAAGAGCAGGAC
1 -GTCCTCAAAGAGCAGGAC
2441534 ACATTTCGTT
Statistics
Matches: 150, Mismatches: 26, Indels: 28
0.74 0.13 0.14
Matches are distributed among these distances:
38 19 0.13
39 1 0.01
40 1 0.01
41 5 0.03
42 41 0.27
43 28 0.19
44 5 0.03
45 26 0.17
46 23 0.15
47 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTTTCTCCTTT
Found at i:2441717 original size:971 final size:971
Alignment explanation
Indices: 2435430--2455068 Score: 28289
Period size: 970 Copynumber: 20.1 Consensus size: 971
2435420 TAGTCTTGTC
*
2435430 AGCAGGACACCTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
** * * *
2435495 GGACACCTTTTCCTTTTCCCCCTTGTCCACAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* *** * *
2435560 TTTTGTCCTCAAAGAGCAAGACATATTTTATTTTCCTCTTTCTTTTGTCCTCAAACG-GTAGGAC
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAA-GAGCAGGAC
* * * * * *
2435624 GCATTTCGTTTTCCTTTTCTCCTTTATCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCC
195 GCATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCC
* *
2435689 CTTCTAGTCCTCAACGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGAAGG
260 CTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGG
2435754 ACGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCT
325 ACGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCT
*
2435819 CAAGGAGCGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATT
390 CAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATT
* * * *
2435884 TATTTGCCC-TCCTAAAATCTGCATAAGTTGGAAGCACCCAAAAAGCCGACACAAGTTGGTGG-T
455 TATTT-CCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCA
* *
2435947 AAGCTTT-CAAAGCCTACAGTAACCAATACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAA
519 AACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAA
* *
2436011 ACCTAGTAGGGAAAACCATAAAA-CCAAAAAAAAAATTGAATGTCACCATTTTACATGCATTTAG
584 ACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
* *
2436075 CTAAGCATTCTTTTGTTGCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
* * * *
2436140 CTCAAAAACAGCCGAAGAGGGGCAGCTGTAGACACCTCATTTTGTTCAGGCTAATTTTTCGGTAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
* *
2436205 CCCAAAGCATTGCCAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
* *
2436270 TCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGCT-GCACC--TTAGTGCTCA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGG-TGGCACCTTTTAGTCCTCA
* * * *
2436332 AAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGGTAGCAACTTTCAGTCCTCAAAG
908 AAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* *
2436396 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTTCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* * *
2436461 GGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGGCGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* * * * *
2436526 TTTTGTCCTCAAAGAGCAAGACGCATTTTATTTTCCTCTTTCTTTTGTCCTCAAAGGGCAGGAAG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * * * * * *
2436591 CATTTCGTTTTCCTTTTCTCCTTTATCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCTC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
2436656 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2436721 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACAGTTTCCTTTTTCTTTTTTCCTTTGTCCT
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCC-TTTTCTTTTTTCCTTTGTCCT
* * *
2436786 CAAGGAGTGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCATCCATT
390 CAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATT
* *
2436851 TATTTGCCC-TCCTAAAATCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGTA
455 TATTT-CCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCA
* *
2436915 AACCTTT-CAAAGCCTACAGTAACCAATACCTATC-AAAGAGGTCAAGCTTTAGAAAATCTCAAA
519 AACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAA
* *
2436978 ACCTAGTAGGGAAAGCCATAAAACCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
584 ACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
* *
2437043 CTAATCATTCTTTTGTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
* *
2437108 CTCAAAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGAGCTAATTTTTCGGTAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
* *
2437173 CCCAAAGCAATACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAATCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
* * *
2437238 TCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGTCCTTAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
* * *
2437303 AGAGCAGGGCGCCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * ** * *
2437366 ACCAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGTACTTTTTAGTCCTCAAATAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* * * *
2437431 GCACGTCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTGTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* *
2437496 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTTTTGTCCTCAAAGAGCGGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * *
2437561 CATTTCGTTTTCCTTTTCTCCAGTGTCTTTAAAGAGCAGGATGCTCTTCATTCCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2437626 TTCTAGTCCTCAAAAAGCAGGACACGTTTTGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2437691 TGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
*
2437756 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCTTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * *
2437821 ATTTCCCTTCCTAAAGTCTGCATAACTTGGCAACACCCAAAAAGCCCACTCAAGTTGGTGGCAAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
**
2437886 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGACATCAAGCTTTAGAAAATCTCAAAAC
521 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
** *
2437951 CTAGTAGGGAAAACCATAAAATCAAGAAAAAAATTTTGAATGTCATCCTTTTACATGCATTTAGC
586 CTAGTAGGGAAAACCATAAAATCAA-AAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
* *
2438016 TAAGCATTCTTTTTTTTCCTTCACGAACAAAATGCTGTCTTTTGTCTTTGCCCTATTCCTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
*
2438081 TCAGAAACAGCCAAAAAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
* *
2438146 CCAAAGCATTACTAGATTA-AGGGGTTGAAAGGTATGAGGAAGAATTGGTGGCACCTTCCAGTCC
780 CCAAAGCATTACTAGA-TAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
*
2438210 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTGCTCAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
* *
2438275 AGAGCAGGACGTCTTTTTTTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * **
2438338 ACCAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2438403 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
2438468 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
** *
2438533 CATTTCGTTTTCCTTTAATCCATTGTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* *
2438598 TTCTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTTTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2438663 CGTACTCATTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* *
2438728 AAGGAGCGAGACCTAGTTCATATTCTTTTCCTTTGTCCT-AAAAATGTGGGACACCCCTTCCATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAA-GTGGGACACCCCTTCCATT
* *
2438792 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCGAAAAGCCCACACAAGTTGTTGGCAA
455 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
*
2438857 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTGGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
*
2438922 CCTAGTAGGGAAAACCATAAAATCAAAAAAGAAAAATTGAATGTCACCCTTTTACATGCATTGAG
585 CCTAGTAGGGAAAACCATAAAATCAAAAAA-AAAAATTGAATGTCACCCTTTTACATGCATTTAG
* * * *
2438987 CTAAGCATTCTTTTTCTTCCATCATGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCTTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
2439052 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
2439117 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
*
2439182 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGTCCTCAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
* *
2439247 AGAGCAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* *
2439310 AGCAGGACACCTTTTCTTTTCCAAGCCCACATGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* *
2439375 GCATGCCTTTTCTTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
2439440 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * **
2439505 TATTTCATTTTCCTTTTCTCCATTGTCAGTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
*
2439570 TTCTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2439635 CGTACTCTTTTTCACTTTGTCCTCAATAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* * * *
2439700 AAGGAGTGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCATCCAATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * * * *
2439765 ATTTGCCC-TCATAAAATCTGCATAAGTTGACAGCACCCAAAAAGCCCATACAAGTTGGTGGTAA
456 ATTT-CCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
* *
2439829 ACCTTT-TAAAGCCTACAGTAACCAATACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
* *
2439893 CCTAGTAGGGAAAGCCATAAAACCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
585 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
*
2439958 TAAGCATTCTTTTGTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* *
2440023 TCAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCATTTTGTCCGAGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
*
2440088 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACAAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * * *
2440153 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGCCCTTAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
* * *
2440218 GAGCAGGGCGCCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAA
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
2440280 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* *
2440345 GCACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* *
2440410 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTTTTGTCCTCAAAGAGCGGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * *
2440475 CATTTCGTTTTCCTTTTCTCCAGTGTCTTTAAAGAGCAGGATGCTCTTCATTCCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* *
2440540 TTCTAGTCCTCAAAGAGCAGGACACGTTTTGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2440605 TGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
*
2440670 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCTTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * *
2440735 ATTTCCCTTCCTAAAGTCTGCATAACTTGGCAACACCCAAAAAGCCCACCCAAGTTGGTGGCAAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
**
2440800 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGACATCAAGCTTTAGAAAATCTCAAAAC
521 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
** *
2440865 CTAGTAGGGAAAACCATAAAATCAAGAAAAAAATTTTGAATGTCATCCTTTTACATGCATTTAGC
586 CTAGTAGGGAAAACCATAAAATCAA-AAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
* *
2440930 TAAGCATTCTTTTTTTTCCATCACGGACAAAATGATGTCTTTTGTCTTTGCCCTATTCCTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* *
2440995 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGAAACCTCATTTTGTCCGGGCTAATTTTTCGGTAAT
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
* * *
2441060 CCAAAGCATTACTAGATTGAGGGGTTGAAAGGTATGAGGAAGAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
*
2441125 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTGCTCAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
*
2441190 GAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* **
2441251 A-CGAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGC
1 AGC-AGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGC
*
2441315 AGGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCC
65 AGGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCC
*
2441380 CTTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCCGGAC
130 CTTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGAC
*
2441445 GCATTTCGTTTTCCTTTTCTCCATTGTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCC
195 GCATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCC
* * *
2441510 CTTCTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCCTTTTTTCTTTTTCCTCGAAAAGCAGG
260 CTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGG
*
2441575 ACGTACTCATTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCT
325 ACGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCT
* *
2441640 CAAGGAGCGAGACCTAGTTCATATTCTTTTCCTTTGTCCT-AAAAATGTGGGACACCCCTTCCAT
390 CAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAA-GTGGGACACCCCTTCCAT
* * *
2441704 TTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCGAAAAGCCCATACAAGTTGTTGGCA
454 TTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCA
*
2441769 AACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTGGAAAATCTCAAA
519 AACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAA
*
2441834 ACCTAGTAGGGAAAACCATAAAATC-AAAAAAAAAATTGAATGTCACCCTTTTACATGCATTGAG
584 ACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
* * *
2441898 CTAAGCATTCTTTTTCTTCCATCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCTTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
* *
2441963 CTCAGAAATAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGAAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
2442028 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
* *
2442093 TCAAAGAGCAGGACATTTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGTCCTCAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
* * *
2442158 AGAGAAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* *
2442221 AGCAGGACACCTTTTCTTTTCCAAGCCCACATGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2442286 GCATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
2442351 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * **
2442416 TATTTCATTTTCCTTTTCTCCATTGTCAGTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* *
2442481 TTCTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGTAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* *
2442546 TGTACTCTTTTTCACTTTGTCCTCAATAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* * * *
2442611 AAGGAGTGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCATCCAATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * * *
2442676 ATTTGCCC-TCATAAAATCTGCATAAGTTGGCAGCACCCAAAAAGCCCATACAAGTTGGTGGTAA
456 ATTT-CCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
*
2442740 ACCTTT-CAAAGCCTACAGTAACCAATACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
* *
2442804 CCTAGTAGGGAAAGCCATAAAACCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
585 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
*
2442869 TAAGCATTCTTTTGTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* * *
2442934 TTAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCATTTTGTCCGAGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
2442999 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * * *
2443064 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGCCCTTAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
* *
2443129 GAGCAGGAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
2443191 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* * *
2443256 GCACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
*
2443321 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCGGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * * *
2443386 CATTTCGTTTTCCTTTTCTCCAGTGTCTTTAAAGTGCAGGATGCTCTTCATTCCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2443451 TTCTAGTCCTCAAAGAGCAGGACACGTTTTGTTTTCCTTTTTTTCGTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* * *
2443516 TGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACATTTTCCTTTTCTTTTTTCCTTTATCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* **
2443581 AAGGAGCGAGGCCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCTTTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* *
2443646 ATTTCCCTTCCTAAAGTCTGCATAACTTGGCAACACCCAAAAAGCCCAC-CAAAGTTGGTGGCAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACAC-AAGTTGGTGGCAA
* **
2443710 ACCTTTCCAAAACCTACAGTAACCAACACCTATCTAAGGACATCAAGCTTTAGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
** *
2443775 CCTAGTAGGGAAAACCATAAAATCAAGAAAAAAATTTTGAATGTCATCCTTTTACATGCATTTAG
585 CCTAGTAGGGAAAACCATAAAATCAA-AAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
* *
2443840 CGAAGCATTCTTTTTTTTCCTTCACGGACAAAATGATGTCTTTTGTCTTTGCCCTATTCCTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
* *
2443905 CTTAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCGGGGCTAATTTTTCGGTAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
* * * *
2443970 CCCAAAGCATTACTAGATTGAGGGGTTGAAAGGTATGAGGAAGAATTGGTGGCTCCTTCCAGTCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
*
2444035 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTGCTCAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
*
2444100 AGAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * **
2444162 ACCAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2444227 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* * *
2444292 TTTTGTCCTTAAAGAGAAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCCGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
*
2444357 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* *
2444422 TTCTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTTTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2444487 CGTACTCATTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* * *
2444552 AAGGAGCGAGACCTAGTTCATATTCTTTTCCTTTGTCCTAAAAAAGTGGGACACCCCTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * *
2444617 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCGAAAAGCCCATACAAGTTGTTGGCAAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
*
2444682 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTGGAAAATCTCAAAAC
521 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
*
2444747 CTAGTAGGGAAAACCATAAAATC-AAAAAAAAAATTGAATGTCACCCTTTTACATGCATTGAGCT
586 CTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGCT
* * *
2444811 AAGCATTCTTTTTCTTCCATCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCTTGATACT
651 AAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATACT
* *
2444876 CAGAAATAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGAAACC
716 CAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAACC
2444941 CAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTC
781 CAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTC
* *
2445006 AAAGAGCAGGACATTTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGTCCTCAAAG
846 AAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAG
* * *
2445071 AGAAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
911 AGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* *
2445132 AGCAGGACACCTTTTCTTTTCCAAGCCCACATGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2445197 GCATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
2445262 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * **
2445327 TATTTCATTTTCCTTTTCTCCATTGTCAGTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* *
2445392 TTCTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGTAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* *
2445457 TGTACTCTTTTTCACTTTGTCCTCAATAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* * * *
2445522 AAGGAGTGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCATCCAATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * * *
2445587 ATTTGCCC-TCATAAAATCTGCATAAGTTGGCAGCACCCAAAAAGCCCATACAAGTTGGTGGTAA
456 ATTT-CCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
*
2445651 ACCTTT-CAAAGCCTACAGTAACCAATACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
* *
2445715 CCTAGTAGGGAAAGCCATAAAACCAAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
585 CCTAGTAGGGAAAACCATAAAATC-AAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
*
2445780 CTAAGCATTCTTTTGTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
* * *
2445845 CTTAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCATTTTGTCCGAGCTAATTTTTCGGTAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
2445910 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
* * * *
2445975 TCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGCCCTTAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
* *
2446040 AGAGCAGGAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
2446103 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* * * *
2446168 GCACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTAATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
*
2446233 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCGGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * * *
2446298 CATTTCGTTTTCCTTTTCTCCAGTGTCTTTAAAGTGCAGGATGCTCTTCATTCCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2446363 TTCTAGTCCTCAAAGAGCAGGACACGTTTTGTTTTCCTTTTTTTCGTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* * *
2446428 TGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACATTTTCCTTTTCTTTTTTCCTTTATCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* **
2446493 AAGGAGCGAGGCCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCTTTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* *
2446558 ATTTCCCTTCCTAAAGTCTGCATAACTTGGCAACACCCAAAAAGCCCAC-CAAAGTTGGTGGCAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACAC-AAGTTGGTGGCAA
* **
2446622 ACCTTTCCAAAACCTACAGTAACCAACACCTATCTAAGGACATCAAGCTTTAGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
** *
2446687 CCTAGTAGGGAAAACCATAAAATCAAGAAAAAAATTTTGAATGTCATCCTTTTACATGCATTTAG
585 CCTAGTAGGGAAAACCATAAAATCAA-AAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAG
* *
2446752 CGAAGCATTC-TTTTTTTCCTTCACGGACAAAATGATGTCTTTTGTCTTTGCCCTATTCCTGATA
649 CTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATA
* *
2446816 CTTAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCGGGGCTAATTTTTCGGTAA
714 CTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAA
* * * *
2446881 CCCAAAGCATTACTAGATTGAGGGGTTGAAAGGTATGAGGAAGAATTGGTGGCTCCTTCCAGTCC
779 CCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCC
*
2446946 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTGCTCAA
844 TCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAA
*
2447011 AGAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
909 AGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * **
2447073 ACCAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2447138 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* *
2447203 TTTTGTCCTTAAAGAGAAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * *
2447268 CATTTCGTTTTCCTTTTCTCCATTGTCATTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCTC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2447333 TTCTAGACCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTTTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2447398 CGTACTCATTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* *
2447463 AAGGAGCGAGACCTAGTTCATATTCTTTTCCTTTGTCCT-AAAAATGTGGGACACCCCTTCCATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAA-GTGGGACACCCCTTCCATT
* *
2447527 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCGAAAAGCCCACACAAGTTGTTGGCAA
455 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
*
2447592 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTGGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
* * *
2447657 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTGAATGTCACCCTTTTACTTGCATTGAGC
585 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
* * *
2447722 TAAGCATTCTTTTTCTTCCATCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCTTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
2447787 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
*
2447852 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGATGAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * *
2447917 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCCCCTTTTAGTCCTCAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
2447982 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * * *
2448044 AGCAAGACACATTTTCTTTTCAATGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* *
2448109 GGATGCCTTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
** * **
2448174 TTTTGTCCTCAAAGAGCAGGACACACTTTATTTTCCACTTTCTTTTGTCCTCAAAGAGTTGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * * * *
2448239 TATTTCATTTTCCTTTTCTCCATTGTTCTTAAAGAGCAAGACGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2448304 TTCTAGACCTCAAAGAGCAGGACACATTTTGTTTTCCTGTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2448369 CGTACTCTTTTTCACTTTGTCCTCATGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
2448434 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* *
2448499 ATTTCCCTTTCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGGCCACACAAGTTGGTGGCAAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
* *
2448564 CATTTCCAAAGCCTACAGTAGCCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
521 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
* * **
2448629 CTAGTAGGGAAAACCATAAAATCAACAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCT
586 CTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGCT
* *
2448694 AAGCATTCTTTTTTTCTCCTTCACGGACAAAATGGTGTCTTTTGCCTTTGCCCTATTCGTGATAC
651 AAGCATTCTTTTTTT-TCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* * ** *
2448759 ACAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGAGCTAATTTTTCGAAAAT
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
* * *
2448824 CGAAAGCATTACTAGATGGAGGGGTCGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * * * *
2448889 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACGTGTTGGTGGCACCATTTAGTGCTCAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
* * * * * *
2448954 GAGCAGGACGTCTTTTTCTTTTAACGCGCAAGCAAGTTGGTGGCAGCTTTCAGTCCTAAAAA
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * * *
2449016 AGCCA-GACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCATAGAGC
1 AG-CAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGC
* * * * * *
2449080 TA-GACGGCTTTTTCTTTCAAACCCATGCAAGTTGGTGGCACCTTTCAGTCCTCAAAGTGCAAGA
65 -AGGA-TGC-----CTTT----TCC-T-C----T--T--CCCCCTT--GTCCTCAAAGAGCAGGA
* ** * *
2449144 CGC-CTTTTCTTTTCAAAGCCCACACTAGTTGGTGGCACATTTTAGTCCTTAAAGAGCAGG--GC
107 CGCAC--TTCATTT------CC-TTCT--TT--T--C-CCTTTT-GTCCTCAAAGAGCAGGATGC
* * * ** * * * *
2449206 GC---CTTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTC-ATTTCCTTCTTTTCCC
155 ACTTTATTTTCCTCTT-TCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT-TTCT-CC
* * * * * * * *
2449267 TTTTGCCCTCAAAGAGCAAGACGCACTTTATTTTCC--TTTTT--CTT-TTGTCCTCAAAGAGCA
217 -ATTGTCCTTAAAGAGCAGGATGCTCTTCA-TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCA
* * * *
2449327 GGACGCATTTCGTTTTCC-TTTTCTCTTTTGTCCTC-AAAGAGTAGGACGCTCTTTATTTCCTTC
280 GGACACATTTCGTTTTCCTTTTTTTC-TTTGTCCTCGAAA-AGCAGGACG-----TA-CT-C-T-
* ** * *
2449390 TTTTCCCTTCTAGTCCTCAA-AGAGCTA-GACGTTCTTCATTTCCTTCTTTTCCGTTCTAGTCCT
334 TTTTCACTT-T-GTCCTCAAGA-AGC-AGGACACT-TTCCTTTTCTT-TTTTCC-TT-T-GTCCT
* ** * ** **
2449453 CAAAGAGC-AGGACAC-ATTTCATTTTCCTTTTTTTTTGTCCTCGAAAAGCAGGACGTACTCTTT
390 CAAGGAGCGA-GAC-CTATTTCATTTT-CTTTTCCTTTGTCCTCAAAAAGTGGGAC--AC-CCCT
* * * ** * * * *** * * * ***
2449516 TTCACTT-TGT-CC-TCAAGAAACAGGACACTTTCCTTTTCTTTTTTGCTTTGTC-CTCACGGAG
449 TCCATTTATTTCCCTTC--CTAA-A-G----TCTGC--AT-AAGTTGGC--AG-CACCCAAAAAG
* * * ** * *** * * * *
2449577 -CGAGACCTA-TT--T--CATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGA-C-ACCCCT-TCCA
500 CCCACA-CAAGTTGGTGGCA--AACCTTTCCAAAG-CCT---ACAGT--AACCAACACCTATCTA
*** ** ** * * * * * * * * * ** *
2449633 TTTATTTC-CCCTCCT--AAAGTTTGC-ATA---AGTTGGCAGCACCCA-AAAAGC--CCAAACA
556 AGGAGGTCAAGCT-TTAGAAAATCT-CAAAACCTAGTAGGGA-AAACCATAAAATCAAAAAAAAA
* * ** * * * ** * * *** * * **** *
2449688 AATTG-GTGGCAAAGC-TTTCCAAAGCGTACAG-TAACCA-ACACCTATCT-AAGGA-GGTCAAG
618 AATTGAATGTC-ACCCTTTTAC-ATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAA-
** ** ***** * *** ** * * * ***
2449747 CTTTGGAAAATCTCAAAACCTAGTAG-GGAAAACCAT-AAAATCA-AAAAAAAAAAATTGAATTT
680 -AATGG--TGTCT-TTTGTCT--TTGCCCTATTCC-TGATACTCAGAAACAGCCAAA--G-A---
*** ** ** * * *
2449809 CGTCCTTTTACATGCATTTAGCTAAGA-ATTTTTTTTTCCTTCACGGACGAAATGGTGTCTTTTC
732 -G-----GGGCA-GC---T-G-T-AGACACCTCATTTT--GTC-CGGGC-TAA-----T-TTTTC
** ** * ** * * * ***** ** * ** * *
2449873 TTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACGCCTCATTTTGT
774 -GGTAACCCAAAGCAT--TACT-AGATAGAGGGGTTGAAAGGTA--TGGGGACG----AATTGGT
* ** ** * ** ** ***** * ** * *
2449938 CCGGGTTAATTTTTTGGTAACC-C-AA-AGCATTACTAGATTGAGGGGTTGAAAG-GTATGAGGA
829 ---GG-CACCTTCC-AGT--CCTCAAAGAGCAGGAC-ATCTT-TTTCTTTCAAAGCCCA-CATG-
** * *
2449999 AGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCC-A-CATG
883 AG--TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCA--
* * *
2450062 AGTTGGTGGCACCTTTTAGTGCTCAAAG
944 AGTTAGTGGCACCTTTCAGTCCTCAAAG
** * * * * * * *
2450090 AGCAGGACGTCTTTT-TTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAGACCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
** * *
2450154 GGACACATTTT-CTTTTGGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
66 GGATGCCTTTTCCTCTT-------C-C-C----------C-C---TT-GTCCTCAAAGAGCAGGA
* *
2450218 TGC-CTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
107 CGCAC--TTCAT-TT---CC---T--T----------------C-T--TTTCC--C---T---TT
*
2450282 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCCGGACGCA
134 T-GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCA
* * *
2450347 TTTCGTTTTCCTTTTCTCCATTGTCCTTAACGAGTAGGA---TGC-TC--TTCATTTCCTTTT--
198 TTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCT-CTTCATTTCCTTT--TTTTCC
* ** * * *
2450404 TTTC-CCTTCT-AGACCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTTTCCTCGAA
260 CTTCTAGTCCTCA-A---A---GAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAA
* *
2450467 AAGTAGGACGTACTCATTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCT
318 AAGCAGGACGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCT
* *
2450532 TTGTCCTCAAGGAGCGAGACCTAGTTCATATTCTTTTCCTTTGTCCT-AAAAATGTGGGACACCC
383 TTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAA-GTGGGACACCC
* *
2450596 CTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCGAAAAGCCCATACAAGTT
447 CTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTT
* *
2450661 GTTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTGGAAAA
512 GGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAA
2450726 TCTCAAAACCTAGTAGGGAAAACCATAAAATC-AAAAAAAAAATTGAATGTCACCCTTTTACATG
577 TCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATG
* * *
2450790 CATTGAGCTAAGCATTCTTTTTCTTCCATCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATT
642 CATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATT
*
2450855 CTTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTT
707 CCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTT
2450920 TCGGTAACCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTT
772 TCGGTAACCCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTT
*
2450985 CCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAG
837 CCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAG
* *
2451050 TCCTCAAAGAGCAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTAGTGGCACCTTTCAGTCCT
902 TCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCT
2451115 CAAAG
967 CAAAG
* *
2451120 AGCAGGACACCTTTTCTTTTCCAAGCCCACATGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2451185 GCATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
*
2451250 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAACAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * **
2451315 TATTTCATTTTCCTTTTCTCCATTGTCAGTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
*
2451380 TTCTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* *
2451445 TGTACTCTTTTTCACTTTGTCCTCAATAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* * * * *
2451510 AAGGAGTGAGACCTATTTCATTCTCTTTTCCTTTGTCCTCAAAAGGTGGGACACCCCATCCAATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * * * *
2451575 ATTTGCCC-TCATAAAATCTGCATAAGTTGGCATCACCCAAAAAGCCCATACAAGTTGGTGGTAA
456 ATTT-CCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
*
2451639 ACCTTT-CAAAGCCTACAGTAACCAATACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
* *
2451703 CCTAGTAGGGAAAGCCATAAAACCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
585 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
*
2451768 TAAGCATTCTTTTGTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* * *
2451833 TTAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCATTTTGTCCGAGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
2451898 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * * *
2451963 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCAGCTTTTAGCCCTTAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
* *
2452028 GAGCAGGGCGCCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
2452090 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* * *
2452155 GCACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
*
2452220 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCGGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * * *
2452285 CATTTCGTTTTCCTTTTCTCCAGTGTCTTTAAAGTGCAGGATGCTCTTCATTCCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * * *
2452350 TTCCAGTCCTCAAAGAGCAGGACACGTTTTGTTTTCCTTTTTTTCGTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* *
2452415 TGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTATCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
**
2452480 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCTTTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* * * *
2452545 ATTTCCCTTCCTAAAGTCTGCATAACTTGGCAACACCTAAAAAGCCCACCCAAGTTGGTGGCAAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
* **
2452610 CCTTTCCAAAACCTACAGTAACCAACACCTATCTAAGGACATCAAGCTTTAGAAAATCTCAAAAC
521 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
** *
2452675 CTAGTAGGGAAAACCATAAAATCAAGAAAAAAATTTTGAATGTCATCCTTTTACATGCATTTAGC
586 CTAGTAGGGAAAACCATAAAATCAA-AAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
*
2452740 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGATGTCTTTTGTCTTTGCCCTATTCCTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* *
2452805 TTAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCGGGGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
* * * *
2452870 CCAAAGCATTACTAGATTGAGGGGTTGAAAGGTATGAGGAAGAATTGGTGGCTCCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
*
2452935 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTGCTCAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
* *
2453000 GAGCAGGACGTCTTTTTTTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * **
2453062 ACCAGGACACATTTTCTTTTGGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
*
2453127 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
* *
2453192 TTTTGTCCTTAAAGAGAAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * *
2453257 CATTTCGTTTTCCTTTTCTCCATTGTCATTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCTC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2453322 TTCTAGACCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTTTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
* **
2453387 CGTACTCATTTTCACTTTGTCCTCAAGAAATAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
* *
2453452 AAGGAGCGAGACCTAGTTCATATTCTTTTCCTTTGTCCT-AAAAATGTGGGACACCCCTTCCATT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAA-GTGGGACACCCCTTCCATT
* *
2453516 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCGAAAAGCCCACACAAGTTGTTGGCAA
455 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAA
*
2453581 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTGGAAAATCTCAAAA
520 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
* * *
2453646 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTGAATGTCACCCTTTTACTTGCATTGAGC
585 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGC
* * *
2453711 TAAGCATTCTTTTTCTTCCATCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCTTGATAC
650 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
2453776 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
*
2453841 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGATGAATTGGTGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * *
2453906 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCCCCTTTTAGTCCTCAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
2453971 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * * *
2454033 AGCAAGACACATTTTCTTTTCAATGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTA
1 AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
* *
2454098 GGATGCCTTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTTCCC
66 GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
** * **
2454163 TTTTGTCCTCAAAGAGCAGGACACACTTTATTTTCCACTTTCTTTTGTCCTCAAAGAGTTGGACG
131 TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
* * * * *
2454228 TATTTCATTTTCCTTTTCTCCATTGTTCTTAAAGAGCAAGACGCTCTTCATTTCCTTTTTTTCCC
196 CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
* * *
2454293 TTCTAGACCTCAAAGAGCAGGACACATTTTGTTTTCCTGTTTTTCTTTGTCCTCGAAAAGCAGGA
261 TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
*
2454358 CGTACTCTTTTTCACTTTGTCCTCATGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
326 CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
*
2454423 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGTGACACCCCTTCCATTT
391 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
* *
2454488 ATTTCCCTTTCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGGCCACACAAGTTGGTGGCAAA
456 ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
* *
2454553 CATTTCCAAAGCCTACAGTAGCCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
521 CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
* * **
2454618 CTAGTAGGGAAAACCATAAAATCAACAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCT
586 CTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGCT
* * *
2454683 ATGCATTCTTTTTTTCTCCTTCACGGACAAAATGGTGTCTTTTGCCTTTGCCCTATTCGTGATAC
651 AAGCATTCTTTTTTT-TCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATAC
* * * ** *
2454748 ACAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGAGCTAATTTTTTGAAAAT
715 TCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAAC
* * * * *
2454813 CGAAAGCATTACTAGATGGAGGGGTCGAAAGGTGTGGGGACGAATTGGGGGCACCTTCCAGTCCT
780 CCAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* * * * *
2454878 CAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACGTGTTGGTGGCACCATTTAGTGCTCAAA
845 CAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
* * * * * * * *
2454943 TAGCAGGATGTCTTTTTCTTTTAACGCGCAAGCAAGTTGGTGGCAGCTTTCAGTCCTAAAAA
910 GAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
* * * *
2455005 AGCCA-GACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCATAGAGC
1 AG-CAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGC
2455069 TAGACGGCTT
Statistics
Matches: 16836, Mismatches: 1489, Indels: 690
0.89 0.08 0.04
Matches are distributed among these distances:
965 1 0.00
966 351 0.02
967 195 0.01
968 309 0.02
969 1027 0.06
970 5164 0.31
971 4316 0.26
972 4019 0.24
973 24 0.00
974 1 0.00
975 9 0.00
976 4 0.00
977 2 0.00
978 4 0.00
979 5 0.00
981 1 0.00
982 3 0.00
983 1 0.00
984 1 0.00
990 1 0.00
992 5 0.00
993 1 0.00
994 18 0.00
995 6 0.00
998 1 0.00
1000 1 0.00
1001 2 0.00
1002 1 0.00
1003 10 0.00
1004 49 0.00
1005 19 0.00
1006 31 0.00
1007 11 0.00
1008 45 0.00
1009 15 0.00
1010 16 0.00
1011 1 0.00
1012 2 0.00
1013 9 0.00
1014 2 0.00
1015 14 0.00
1016 10 0.00
1017 6 0.00
1018 2 0.00
1019 2 0.00
1020 25 0.00
1021 25 0.00
1022 7 0.00
1023 8 0.00
1024 392 0.02
1025 198 0.01
1026 53 0.00
1027 80 0.00
1028 18 0.00
1029 60 0.00
1030 274 0.02
1031 161 0.01
1032 73 0.00
1033 53 0.00
1034 67 0.00
1035 53 0.00
1036 9 0.00
1039 21 0.00
1040 6 0.00
1043 21 0.00
1044 3 0.00
1045 54 0.00
1046 21 0.00
1047 6 0.00
1048 30 0.00
1049 21 0.00
1050 3 0.00
1054 5 0.00
1055 21 0.00
1056 26 0.00
1057 6 0.00
1058 21 0.00
1059 53 0.00
1060 3 0.00
1061 25 0.00
1062 2 0.00
1064 6 0.00
1065 21 0.00
1067 6 0.00
1068 6 0.00
1069 22 0.00
1070 25 0.00
1071 65 0.00
1072 82 0.00
1073 155 0.01
1074 371 0.02
1075 53 0.00
1076 34 0.00
1077 76 0.00
1078 60 0.00
1079 36 0.00
1080 16 0.00
1081 8 0.00
1082 38 0.00
1083 19 0.00
1084 19 0.00
1085 67 0.00
1086 69 0.00
1087 6 0.00
1088 9 0.00
1089 21 0.00
1090 30 0.00
1091 48 0.00
1092 18 0.00
1093 36 0.00
1094 3 0.00
1095 9 0.00
1096 90 0.01
1097 6 0.00
1098 51 0.00
1099 6 0.00
1100 84 0.00
1101 51 0.00
1102 117 0.01
1103 27 0.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (971 bp):
AGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
GGATGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCC
TTTTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACG
CATTTCGTTTTCCTTTTCTCCATTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCC
TTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGA
CGTACTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTC
AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTT
ATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAGCCCACACAAGTTGGTGGCAAA
CCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAAC
CTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTGAATGTCACCCTTTTACATGCATTTAGCT
AAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATACT
CAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGCTAATTTTTCGGTAACC
CAAAGCATTACTAGATAGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTC
AAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAG
AGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTAGTGGCACCTTTCAGTCCTCAAAG
Found at i:2442154 original size:61 final size:61
Alignment explanation
Indices: 2442073--2442286 Score: 263
Period size: 61 Copynumber: 3.5 Consensus size: 61
2442063 TGGGGACGAA
* *
2442073 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATTTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
* * * * * *
2442134 TTGGTGGCAGCTTTTAGTCCTCAAAGAGAAGGGCGTCTTTTTCTTTTAAAGCCCAGGCA--AG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCA--CATGAG
* * *
2442195 TTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA-CCTTTTCTTTTCCAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACATGAG
* *
2442256 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAG
2442287 CATGCCTTTT
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
59 2 0.02
60 6 0.05
61 118 0.92
63 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
Found at i:2442296 original size:122 final size:122
Alignment explanation
Indices: 2442076--2442296 Score: 329
Period size: 122 Copynumber: 1.8 Consensus size: 122
2442066 GGACGAATTG
* *
2442076 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATTTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACTTTTCTCTTTCAAAGCCCACATGAGTTGGTGG
** *
2442141 CAGCTTTTAGTCCTCAAAGAGAAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTA
66 CAGCTTTTAGTCCTCAAAGAGAAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
* *
2442198 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCCAAGCCCACATGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACA-CTTTTCTCTTTCAAAGCCCACATGAGTTGGTG
* *
2442262 GCA-CTTTTTAGTCCTCAAAGAGCAGCATGCCTTTT
65 GCAGC-TTTTAGTCCTCAAAGAGAAGCACGCCTTTT
2442297 CCTCTTCCCC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
121 1 0.01
122 82 0.93
123 5 0.06
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACTTTTCTCTTTCAAAGCCCACATGAGTTGGTGG
CAGCTTTTAGTCCTCAAAGAGAAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
Found at i:2442357 original size:45 final size:45
Alignment explanation
Indices: 2442308--2442503 Score: 192
Period size: 45 Copynumber: 4.4 Consensus size: 45
2442298 CTCTTCCCCC
2442308 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2442353 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * *
2442395 TTGTCCTCAAAGAGCAGGACGTATTTCATTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * *
2442438 TTGTCAGT-AAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTT
1 TTGTC-CTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2442483 CTAGTCCTCAAAGAGTAGGAC
1 -TTGTCCTCAAAGAGCAGGAC
2442504 ACATTTCGTT
Statistics
Matches: 119, Mismatches: 20, Indels: 23
0.73 0.12 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 27 0.23
43 24 0.20
44 7 0.06
45 35 0.29
46 19 0.16
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2442470 original size:42 final size:43
Alignment explanation
Indices: 2442293--2442534 Score: 197
Period size: 42 Copynumber: 5.5 Consensus size: 43
2442283 GCAGCATGCC
* * *
2442293 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTCA
* * *
2442336 -TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGATGCACTTTA
1 TTTTCCTT-TTCT-CC-TTTGTCCTCAAAGAGCAGGACGCACTTCA
* *
2442381 TTTTCCTCTTTCT--TTTGTCCTCAAAGAGCAGGACGTATTTCA
1 TTTTCCT-TTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTCA
* * * *
2442423 TTTTCCTTTTCTCCATTGTCAGT-AAAGAGCAGGATGCTCTTCA
1 TTTTCCTTTTCTCCTTTGTC-CTCAAAGAGCAGGACGCACTTCA
* * * * *
2442466 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGTAGGACACATTTCG
1 TTTTCC-TTTTCT-CCTT-T-GTCCTCAAAGAGCAGGACGCACTTCA
* *
2442512 TTTTCCTTTTTTTCTTTGTCCTC
1 TTTTCCTTTTCTCCTTTGTCCTC
2442535 GAAAAGTAGG
Statistics
Matches: 158, Mismatches: 27, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
41 5 0.03
42 43 0.27
43 34 0.22
44 7 0.04
45 31 0.20
46 32 0.20
47 6 0.04
ACGTcount: A:0.17, C:0.27, G:0.13, T:0.42
Consensus pattern (43 bp):
TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTCA
Found at i:2443264 original size:122 final size:122
Alignment explanation
Indices: 2443046--2443266 Score: 338
Period size: 122 Copynumber: 1.8 Consensus size: 122
2443036 GGACGAATTG
* * *
2443046 GTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2443111 CAGCTTTTAGCCCTTAAAGAGCAGGAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
66 CAGCTTTTAGCCCTCAAAGAGCAGCAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
*
2443168 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2443232 GCA-CTTTTTAGTCCTCAAAGAGCAGCACGCCTTTT
65 GCAGC-TTTTAGCCCTCAAAGAGCAGCAAGCCTTTT
2443267 CCTCTTCCCC
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
121 6 0.07
122 83 0.93
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
CAGCTTTTAGCCCTCAAAGAGCAGCAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
Found at i:2443265 original size:61 final size:61
Alignment explanation
Indices: 2443038--2443267 Score: 261
Period size: 61 Copynumber: 3.8 Consensus size: 61
2443028 AGGTATGGGG
* * * *
2443038 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCAAAGCCCAC
* * * * *
2443099 ATGAGTTGGTGGCAGCTTTTAGCCCTTAAAGAGCAGGA-AGCCTTTTTCTTTT-AAAGCCCA-
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA-CC-TTTTCTTTTCAAAGCCCAC
* *
2443159 AGCAAGTTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
1 A-CGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
* * * *
2443221 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGCACGCCTTTTC
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTC
2443268 CTCTTCCCCC
Statistics
Matches: 140, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
60 11 0.08
61 119 0.85
62 9 0.06
63 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
Found at i:2443379 original size:42 final size:42
Alignment explanation
Indices: 2443278--2443404 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
2443268 CTCTTCCCCC
* *
2443278 TTGTCCTCAAAGAGCAAGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
*
2443323 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2443365 TTGTCCTCAAAGAGCGGGACGCA-TTTCGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2443405 CCAGTGTCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 8 0.11
42 31 0.42
44 3 0.04
45 27 0.36
46 5 0.07
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2443569 original size:42 final size:41
Alignment explanation
Indices: 2443521--2443622 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 41
2443511 CAGGATGTAC
*
2443521 TCTTTTTCACTTTGTCCTCAAGAAGC-AGGACAT-TTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCGAGG-CATATTTCATTT
* * *
2443562 TCTTTTTTCCTTTATCCTCAAGGAGCGAGGCCTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCGAGGCATATTTCATTT
2443604 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2443623 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
40 16 0.30
41 19 0.36
42 18 0.34
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.46
Consensus pattern (41 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCGAGGCATATTTCATTT
Found at i:2444101 original size:61 final size:61
Alignment explanation
Indices: 2444015--2444229 Score: 263
Period size: 61 Copynumber: 3.5 Consensus size: 61
2444005 TGAGGAAGAA
* * *
2444015 TTGGTGGCTCCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
* * * * * *
2444076 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
* * * **
2444136 TTAGTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACACGAG
* *
2444197 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2444230 TGCCTTTTCC
Statistics
Matches: 129, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
59 5 0.04
60 44 0.34
61 80 0.62
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2444237 original size:121 final size:121
Alignment explanation
Indices: 2444018--2444237 Score: 325
Period size: 121 Copynumber: 1.8 Consensus size: 121
2444008 GGAAGAATTG
* * * *
2444018 GTGGCTCCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2444083 CACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTAAAGCCCACGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
* **
2444139 GTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2444203 GCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2444238 CCTCTTCCCC
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 6 0.07
121 81 0.93
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (121 bp):
GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
Found at i:2444348 original size:42 final size:44
Alignment explanation
Indices: 2444249--2444497 Score: 138
Period size: 43 Copynumber: 5.7 Consensus size: 44
2444239 CTCTTCCCCC
* *
2444249 TTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGAAGGACGCACTTCATTTCCTTCTTTT-CCTT
* * *
2444294 TTGTCCTTAAAGAGAAGGATGCACTTTATTTTCC-TC-TTT-CTT
1 TTGTCCTCAAAGAGAAGGACGCACTTCA-TTTCCTTCTTTTCCTT
** * * * *
2444336 TTGTCCTCAAAGAGCCGGACGCATTTCGTTTTCCTT-TTCTCC-A
1 TTGTCCTCAAAGAGAAGGACGCACTTC-ATTTCCTTCTTTTCCTT
* * * * * *
2444379 TTGTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGAAGGACGCACTTCATTTCCTTCTTTT-CCTT
* * * * * * *
2444424 CTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCTT-TTTTTCTT
1 -TTGTCCTCAAAGAGAAGGACGCACTTC-ATTTCCTTCTTTTCCTT
* *
2444469 TT-TCCTCGAAA-AGCAGGACGTAC-TCATTT
1 TTGTCCTC-AAAGAGAAGGACGCACTTCATTT
2444498 TCACTTTGTC
Statistics
Matches: 154, Mismatches: 39, Indels: 26
0.70 0.18 0.12
Matches are distributed among these distances:
41 3 0.02
42 38 0.25
43 40 0.26
44 10 0.06
45 28 0.18
46 28 0.18
47 7 0.05
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGAAGGACGCACTTCATTTCCTTCTTTTCCTT
Found at i:2444463 original size:46 final size:43
Alignment explanation
Indices: 2444253--2444464 Score: 110
Period size: 42 Copynumber: 4.8 Consensus size: 43
2444243 TCCCCCTTGT
** * * *
2444253 CCTCAAAGAGCAGGACGCCCTTC-ATTTCCTTCTTTTCCCTTTTGT
1 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTT-TTTT-CC-ATTGA
* * * * * ** *
2444298 CCTTAAAGAGAAGGATGCACTTT-ATTTTCC-TCTTTCTTTTGT
1 CCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTTTCCATTGA
* * *
2444340 CCTCAAAGAGCCGGACGCATTTCGTTTTCCTTTTCTCCATTGT
1 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTTTCCATTGA
* * * * *
2444383 CCTTAACGAGCAGGATGC-TCTTC-ATTTCCTTTTTTTCCCTTCTAGA
1 CCTCAAAGAGCAGGACGCAT-TTCGTTTTCC-TTTTTT-CCAT-T-GA
*
2444429 CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTT
1 CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTTT
2444465 TCTTTTTCCT
Statistics
Matches: 126, Mismatches: 30, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
41 3 0.02
42 32 0.25
43 31 0.25
44 6 0.05
45 17 0.13
46 31 0.25
47 6 0.05
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.40
Consensus pattern (43 bp):
CCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTTTCCATTGA
Found at i:2445065 original size:61 final size:61
Alignment explanation
Indices: 2444984--2445197 Score: 263
Period size: 61 Copynumber: 3.5 Consensus size: 61
2444974 TGGGGACGAA
* *
2444984 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATTTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
* * * * * *
2445045 TTGGTGGCAGCTTTTAGTCCTCAAAGAGAAGGGCGTCTTTTTCTTTTAAAGCCCAGGCA--AG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCA--CATGAG
* * *
2445106 TTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA-CCTTTTCTTTTCCAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACATGAG
* *
2445167 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAG
2445198 CATGCCTTTT
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
59 2 0.02
60 6 0.05
61 118 0.92
63 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
Found at i:2445207 original size:122 final size:122
Alignment explanation
Indices: 2444987--2445207 Score: 329
Period size: 122 Copynumber: 1.8 Consensus size: 122
2444977 GGACGAATTG
* *
2444987 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATTTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACTTTTCTCTTTCAAAGCCCACATGAGTTGGTGG
** *
2445052 CAGCTTTTAGTCCTCAAAGAGAAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTA
66 CAGCTTTTAGTCCTCAAAGAGAAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
* *
2445109 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCCAAGCCCACATGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACA-CTTTTCTCTTTCAAAGCCCACATGAGTTGGTG
* *
2445173 GCA-CTTTTTAGTCCTCAAAGAGCAGCATGCCTTTT
65 GCAGC-TTTTAGTCCTCAAAGAGAAGCACGCCTTTT
2445208 CCTCTTCCCC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
121 1 0.01
122 82 0.93
123 5 0.06
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACTTTTCTCTTTCAAAGCCCACATGAGTTGGTGG
CAGCTTTTAGTCCTCAAAGAGAAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
Found at i:2445268 original size:45 final size:45
Alignment explanation
Indices: 2445219--2445414 Score: 192
Period size: 45 Copynumber: 4.4 Consensus size: 45
2445209 CTCTTCCCCC
2445219 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2445264 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * *
2445306 TTGTCCTCAAAGAGCAGGACGTATTTCATTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * *
2445349 TTGTCAGT-AAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTT
1 TTGTC-CTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2445394 CTAGTCCTCAAAGAGTAGGAC
1 -TTGTCCTCAAAGAGCAGGAC
2445415 ACATTTCGTT
Statistics
Matches: 119, Mismatches: 20, Indels: 23
0.73 0.12 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 27 0.23
43 24 0.20
44 7 0.06
45 35 0.29
46 19 0.16
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2445381 original size:42 final size:43
Alignment explanation
Indices: 2445204--2445445 Score: 197
Period size: 42 Copynumber: 5.5 Consensus size: 43
2445194 GCAGCATGCC
* * *
2445204 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACTTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTCA
* * *
2445247 -TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGATGCACTTTA
1 TTTTCCTT-TTCT-CC-TTTGTCCTCAAAGAGCAGGACGCACTTCA
* *
2445292 TTTTCCTCTTTCT--TTTGTCCTCAAAGAGCAGGACGTATTTCA
1 TTTTCCT-TTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTCA
* * * *
2445334 TTTTCCTTTTCTCCATTGTCAGT-AAAGAGCAGGATGCTCTTCA
1 TTTTCCTTTTCTCCTTTGTC-CTCAAAGAGCAGGACGCACTTCA
* * * * *
2445377 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGTAGGACACATTTCG
1 TTTTCC-TTTTCT-CCTT-T-GTCCTCAAAGAGCAGGACGCACTTCA
* *
2445423 TTTTCCTTTTTTTCTTTGTCCTC
1 TTTTCCTTTTCTCCTTTGTCCTC
2445446 GAAAAGTAGG
Statistics
Matches: 158, Mismatches: 27, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
41 5 0.03
42 43 0.27
43 34 0.22
44 7 0.04
45 31 0.20
46 32 0.20
47 6 0.04
ACGTcount: A:0.17, C:0.27, G:0.13, T:0.42
Consensus pattern (43 bp):
TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCACTTCA
Found at i:2446176 original size:122 final size:122
Alignment explanation
Indices: 2445958--2446178 Score: 338
Period size: 122 Copynumber: 1.8 Consensus size: 122
2445948 GGACGAATTG
* * *
2445958 GTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2446023 CAGCTTTTAGCCCTTAAAGAGCAGGAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
66 CAGCTTTTAGCCCTCAAAGAGCAGCAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
*
2446080 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2446144 GCA-CTTTTTAGTCCTCAAAGAGCAGCACGCCTTTT
65 GCAGC-TTTTAGCCCTCAAAGAGCAGCAAGCCTTTT
2446179 CCTCTTCCCC
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
121 6 0.07
122 83 0.93
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
CAGCTTTTAGCCCTCAAAGAGCAGCAAGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
Found at i:2446177 original size:61 final size:61
Alignment explanation
Indices: 2445950--2446179 Score: 261
Period size: 61 Copynumber: 3.8 Consensus size: 61
2445940 AGGTATGGGG
* * * *
2445950 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCAAAGCCCAC
* * * * *
2446011 ATGAGTTGGTGGCAGCTTTTAGCCCTTAAAGAGCAGGA-AGCCTTTTTCTTTT-AAAGCCCA-
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA-CC-TTTTCTTTTCAAAGCCCAC
* *
2446071 AGCAAGTTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
1 A-CGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
* * * *
2446133 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGCACGCCTTTTC
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTC
2446180 CTCTTCCCCC
Statistics
Matches: 140, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
60 11 0.08
61 119 0.85
62 9 0.06
63 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
Found at i:2446291 original size:42 final size:42
Alignment explanation
Indices: 2446190--2446316 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
2446180 CTCTTCCCCC
* *
2446190 TTGTCCTCAAAGAGCAAGACGCAC-TTAATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
*
2446235 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2446277 TTGTCCTCAAAGAGCGGGACGCA-TTTCGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2446317 CCAGTGTCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 8 0.11
42 31 0.42
44 3 0.04
45 24 0.32
46 8 0.11
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2446481 original size:42 final size:41
Alignment explanation
Indices: 2446433--2446534 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 41
2446423 CAGGATGTAC
*
2446433 TCTTTTTCACTTTGTCCTCAAGAAGC-AGGACAT-TTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCGAGG-CATATTTCATTT
* * *
2446474 TCTTTTTTCCTTTATCCTCAAGGAGCGAGGCCTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCGAGGCATATTTCATTT
2446516 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2446535 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
40 16 0.30
41 19 0.36
42 18 0.34
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.46
Consensus pattern (41 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCGAGGCATATTTCATTT
Found at i:2447012 original size:61 final size:61
Alignment explanation
Indices: 2446926--2447140 Score: 263
Period size: 61 Copynumber: 3.5 Consensus size: 61
2446916 TGAGGAAGAA
* * *
2446926 TTGGTGGCTCCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
* * * * * *
2446987 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
* * * **
2447047 TTAGTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACACGAG
* *
2447108 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2447141 TGCCTTTTCC
Statistics
Matches: 129, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
59 5 0.04
60 44 0.34
61 80 0.62
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2447148 original size:121 final size:121
Alignment explanation
Indices: 2446929--2447148 Score: 325
Period size: 121 Copynumber: 1.8 Consensus size: 121
2446919 GGAAGAATTG
* * * *
2446929 GTGGCTCCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2446994 CACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTAAAGCCCACGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
* **
2447050 GTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2447114 GCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2447149 CCTCTTCCCC
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 6 0.07
121 81 0.93
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (121 bp):
GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
Found at i:2447209 original size:45 final size:45
Alignment explanation
Indices: 2447160--2447408 Score: 171
Period size: 43 Copynumber: 5.7 Consensus size: 45
2447150 CTCTTCCCCC
*
2447160 TTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * *
2447205 TTGTCCTTAAAGAGAAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * *
2447247 TTGTCCTCAAAGAGCAGGACGCATTTCGTTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * * * * *
2447290 TTGTCATTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * * *
2447335 CTAGACCTCAAAGAGCAGGACACATTTCATTTTCCTT-TTTT-TCTT
1 -TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
*
2447380 TT-TCCTCGAAA-AGCAGGACGTAC-TCATTT
1 TTGTCCTC-AAAGAGCAGGACGCACTTCATTT
2447409 TCACTTTGTC
Statistics
Matches: 154, Mismatches: 38, Indels: 28
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.01
41 9 0.06
42 28 0.18
43 37 0.24
44 9 0.06
45 35 0.23
46 28 0.18
47 7 0.05
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2447259 original size:42 final size:42
Alignment explanation
Indices: 2447160--2447399 Score: 134
Period size: 42 Copynumber: 5.5 Consensus size: 42
2447150 CTCTTCCCCC
* *
2447160 TTGTCCTCAAAGAGCAGGACGCCCTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
* * *
2447205 TTGTCCTTAAAGAGAAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2447247 TTGTCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCT-TTTCTCCA
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT--T
* * * * * * *
2447290 TTGTCATTAACGAGCAGGATGCTCTTCA-TTTCCTTTTTTTCTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC--TCTTTCT-T
* * *
2447334 TCTAGACCTCAAAGAGCAGGACACA-TTTCATTTTCCTTTTTTTCTT
1 T-T-GTCCTCAAAGAGCAGGACGCACTTT-ATTTTCC--TCTTTCTT
2447380 TT-TCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2447400 TACTCATTTT
Statistics
Matches: 154, Mismatches: 28, Indels: 28
0.73 0.13 0.13
Matches are distributed among these distances:
41 8 0.05
42 35 0.23
43 30 0.19
44 11 0.07
45 34 0.22
46 22 0.14
47 14 0.09
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2447990 original size:61 final size:61
Alignment explanation
Indices: 2447891--2448111 Score: 259
Period size: 61 Copynumber: 3.6 Consensus size: 61
2447881 AGGTATGGGG
* *
2447891 ATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCAC
1 ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
* * * *
2447952 ATGAATTGGTGGCCCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCA-
1 ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
* * * *
2448012 A-GCAAGTTAGTGGCACCTTTCAGTCCTCAAAGAGCAAGACA-CATTTTCTTTTCAATGCCCAC
1 ATG-AA-TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCAC
* * * * *
2448074 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGA
1 ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2448112 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
59 1 0.01
60 9 0.07
61 122 0.90
62 2 0.01
63 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (61 bp):
ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
Found at i:2448119 original size:122 final size:122
Alignment explanation
Indices: 2447899--2448119 Score: 318
Period size: 122 Copynumber: 1.8 Consensus size: 122
2447889 GGATGAATTG
* * * *
2447899 GTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCATTTTCTTTCAAAGCCCACACGAATTGGTGG
* *
2447964 CCCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
* * *
2448021 GTGGCACCTTTCAGTCCTCAAAGAGCAAGACA-CATTTTCTTTTCAATGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCATTTTC-TTTCAAAGCCCACACGAATTGGTG
* * *
2448085 GCACTTTTTAGTCCTCAAAGAGTAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2448120 CCTCCTCCCC
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 6 0.07
122 80 0.93
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCATTTTCTTTCAAAGCCCACACGAATTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
Found at i:2448181 original size:45 final size:44
Alignment explanation
Indices: 2448131--2448370 Score: 181
Period size: 43 Copynumber: 5.5 Consensus size: 44
2448121 CTCCTCCCCC
2448131 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TTTTTT-CCTT
* * **
2448176 TTGTCCTCAAAGAGCAGGACACACTTTATTTTCC-ACTTT-CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTTTCCTT
** * * * *
2448218 TTGTCCTCAAAGAGTTGGACGTATTTCATTTTCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTTTCCTT
* * * *
2448261 TTGTTCTTAAAGAGCAAGACGCTCTTCA-TTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TTTTTT-CCTT
* * * * **
2448306 CTAGACCTCAAAGAGCAGGACACATTTTGTTTTCCTGTTTTT-C-T
1 -TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCT-TTTTTCCTT
2448350 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2448371 TACTCTTTTT
Statistics
Matches: 148, Mismatches: 37, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
42 36 0.24
43 41 0.28
44 10 0.07
45 27 0.18
46 24 0.16
47 10 0.07
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTTTCCTT
Found at i:2448968 original size:61 final size:59
Alignment explanation
Indices: 2448868--2449213 Score: 304
Period size: 61 Copynumber: 5.7 Consensus size: 59
2448858 TGGGGACGAA
* * * **
2448868 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACGTG
1 TTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGAC-GCTTTTTCTTTCAAAGCCCACACAAG
* * * *
2448929 TTGGTGGCACCATTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCA-AGCAAG
1 TTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGACG-CTTTTTCTTTCAAAGCCCACA-CAAG
* * * * * *
2448990 TTGGTGGCAGCTTTCAGTCCTAAAAAAGCCA-GACGCCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTT-AGTCCTCAAAGAG-CAGGACGCTTTTTC-TTTCAAAGCCCACACAAG
* **
2449051 TTGGTGGCACCTTTTAGTCCTCATAGAGCTA-GACGGCTTTTTCTTTCAAA-CCCATGCAAG
1 TTGGTGGCACC-TTTAGTCCTCAAAGAGC-AGGAC-GCTTTTTCTTTCAAAGCCCACACAAG
* * * *
2449111 TTGGTGGCACCTTTCAGTCCTCAAAGTGCAAGACGCCTTTTCTTTTCAAAGCCCACACTAG
1 TTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACGCTTTTTC-TTTCAAAGCCCACACAAG
* * * *
2449172 TTGGTGGCACATTTTAGTCCTTAAAGAGCAGGGCGCCTTTTC
1 TTGGTGGCAC-CTTTAGTCCTCAAAGAGCAGGACGCTTTTTC
2449214 CTCTTCCCCC
Statistics
Matches: 231, Mismatches: 39, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
59 11 0.05
60 50 0.22
61 152 0.66
62 18 0.08
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (59 bp):
TTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCTTTTTCTTTCAAAGCCCACACAAG
Found at i:2449152 original size:121 final size:122
Alignment explanation
Indices: 2448868--2449212 Score: 428
Period size: 121 Copynumber: 2.8 Consensus size: 122
2448858 TGGGGACGAA
* * * ** *
2448868 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCACACGTGTTG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGTTG
* * * *
2448932 GTGGCACCATTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCAAGCAAG
65 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTTTCTTTAAACGCGCAAGCAAG
* * * * *
2448990 TTGGTGGCAGCTTTCAGTCCTAAAAAAGCCAGACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
* *
2449055 TGGCACCTTTTAGTCCTCATAGAGCTA-GACGGCTTTTTCTTTCAAAC-C-CATGCAAG
66 TGGCACCTTTTAGTCCTCAAAGAGC-AGGACGGCTTTTTCTTT-AAACGCGCAAGCAAG
* *
2449111 TTGGTGGCACCTTTCAGTCCTCAAAGTGCAAGACGCCTTTTCTTTTCAAAGCCCACACTAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
* * * *
2449176 TGGCACATTTTAGTCCTTAAAGAGCAGGGCGCCTTTT
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTT
2449213 CCTCTTCCCC
Statistics
Matches: 190, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
120 1 0.01
121 95 0.50
122 89 0.47
123 5 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTTTCTTTAAACGCGCAAGCAAG
Found at i:2449410 original size:46 final size:45
Alignment explanation
Indices: 2449224--2449465 Score: 248
Period size: 46 Copynumber: 5.4 Consensus size: 45
2449214 CTCTTCCCCC
* *
2449224 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTT
* * * *
2449269 TTGCCCTCAAAGAGCAAGACGCACTTTATTTTCC-T-TTTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCTCTTCA-TTTCCTTCTTTTCCCTT
* * *
2449311 TTGTCCTCAAAGAGCAGGACGCAT-TTCGTTT--TCCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGC-TCTTCATTTCCTTCTTTTCCCTT
* *
2449354 TTGTCCTCAAAGAGTAGGACGCTCTTTATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTT
* * *
2449399 CTAGTCCTCAAAGAGCTA-GACGTTCTTCATTTCCTTCTTTTCCGTT
1 -TTGTCCTCAAAGAGC-AGGACGCTCTTCATTTCCTTCTTTTCCCTT
*
2449445 CTAGTCCTCAAAGAGCAGGAC
1 -TTGTCCTCAAAGAGCAGGAC
2449466 ACATTTCATT
Statistics
Matches: 165, Mismatches: 20, Indels: 23
0.79 0.10 0.11
Matches are distributed among these distances:
41 7 0.04
42 26 0.16
43 29 0.18
44 4 0.02
45 36 0.22
46 62 0.38
47 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.39
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTT
Found at i:2449474 original size:46 final size:44
Alignment explanation
Indices: 2449224--2449507 Score: 245
Period size: 46 Copynumber: 6.5 Consensus size: 44
2449214 CTCTTCCCCC
* *
2449224 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTT-CCTT
* *
2449269 TTGCCCTCAAAGAGCAAGACGCACTTT-ATTTTCC-T-TTTT-CTT
1 TTGTCCTCAAAGAGCAGGACGCA-TTTCA-TTTCCTTCTTTTCCTT
* *
2449311 TTGTCCTCAAAGAGCAGGACGCATTTCGTTT--TCCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTC-CTT
* *
2449354 TTGTCCTCAAAGAGTAGGACGC-TCTTTATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTCCTTCTTTT-CCTT
* *
2449399 CTAGTCCTCAAAGAGCTA-GACG-TTCTTCATTTCCTTCTTTTCCGTT
1 -TTGTCCTCAAAGAGC-AGGACGCAT-TTCATTTCCTTCTTTTCC-TT
* *
2449445 CTAGTCCTCAAAGAGCAGGACACATTTCATTTTCC-T-TTTT--TT
1 -TTGTCCTCAAAGAGCAGGACGCATTTCA-TTTCCTTCTTTTCCTT
2449487 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2449508 TACTCTTTTT
Statistics
Matches: 201, Mismatches: 19, Indels: 42
0.77 0.07 0.16
Matches are distributed among these distances:
41 25 0.12
42 30 0.15
43 29 0.14
44 4 0.02
45 38 0.19
46 68 0.34
47 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCTT
Found at i:2449515 original size:135 final size:130
Alignment explanation
Indices: 2449224--2449507 Score: 360
Period size: 130 Copynumber: 2.2 Consensus size: 130
2449214 CTCTTCCCCC
* * * *
2449224 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGCCCTCAAAGAGCAAGAC
1 TTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTTTAGCCCTCAAAGAGCAAGAC
* * * *
2449289 GCACTTTATTTTCCTTTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCTT
66 GCACTTCATTTTCCTTTTTCTTTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTCTCTT
* * *
2449354 TTGTCCTCAAAGAGTAGGACGCTCTTTATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCTAGA
1 TTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTT-TAGCCCTCAAAGAGCAAGA
**
2449419 CGTTCTTCA-TTTCCTTCTTTTCCGTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTT
65 CGCACTTCATTTTCC-T-TTTT-C-TT-TAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTT
2449483 T-T-TT
125 TCTCTT
2449487 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2449508 TACTCTTTTT
Statistics
Matches: 135, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
130 48 0.36
131 23 0.17
132 4 0.03
133 19 0.14
134 6 0.04
135 35 0.26
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (130 bp):
TTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTTTAGCCCTCAAAGAGCAAGAC
GCACTTCATTTTCCTTTTTCTTTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTCTCTT
Found at i:2450103 original size:61 final size:60
Alignment explanation
Indices: 2450003--2450217 Score: 261
Period size: 61 Copynumber: 3.5 Consensus size: 60
2449993 TGAGGAAGAA
* *
2450003 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
2450064 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTT-TTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * * **
2450124 TTAGTGGCACCTTTCAGTCCTCAAAGACCAGGACACATTTTCTTTTGGAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2450185 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2450218 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
59 5 0.04
60 44 0.34
61 81 0.62
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (60 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2450225 original size:121 final size:121
Alignment explanation
Indices: 2450006--2450225 Score: 334
Period size: 121 Copynumber: 1.8 Consensus size: 121
2449996 GGAAGAATTG
* * *
2450006 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2450071 CACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTAAAGCCCACGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
* **
2450127 GTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2450191 GCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2450226 CCTCTTCCCC
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
120 6 0.07
121 82 0.93
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (121 bp):
GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTAAAGCCCACGCAAGTTA
Found at i:2450252 original size:38 final size:40
Alignment explanation
Indices: 2450201--2450308 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 40
2450191 GCACTTTTTA
2450201 GTCCTCAAAGAGCAGGATGCCTTTTCC-TC-TTCCCCCTT
1 GTCCTCAAAGAGCAGGATGCCTTTTCCTTCTTTCCCCCTT
* **
2450239 GTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGATG-CC-T--TTTCCTTC-TTTCCCCCTT
2450284 GTCCTCAAAGAGCAGGATGCACTTT
1 GTCCTCAAAGAGCAGGATGC-CTTT
2450309 ATTTTCCTCT
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
38 18 0.31
39 2 0.03
40 1 0.02
42 7 0.12
43 2 0.03
44 2 0.03
45 26 0.45
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (40 bp):
GTCCTCAAAGAGCAGGATGCCTTTTCCTTCTTTCCCCCTT
Found at i:2450286 original size:45 final size:45
Alignment explanation
Indices: 2450237--2450432 Score: 172
Period size: 45 Copynumber: 4.4 Consensus size: 45
2450227 CTCTTCCCCC
*
2450237 TTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2450282 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * * *
2450324 TTGTCCTCAAAGAGCCGGACGCATTTCGTTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * * * *
2450367 TTGTCCTTAACGAGTAGGATGCTCTTCATTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2450412 CTAGACCTCAAAGAGCAGGAC
1 -TTGTCCTCAAAGAGCAGGAC
2450433 ACATTTCGTT
Statistics
Matches: 114, Mismatches: 27, Indels: 19
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 26 0.23
43 23 0.20
44 6 0.05
45 33 0.29
46 19 0.17
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.38
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2450338 original size:42 final size:42
Alignment explanation
Indices: 2450237--2450363 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
2450227 CTCTTCCCCC
* *
2450237 TTGTCCTCAAAGAGCAGGACGCCCTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
*
2450282 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2450324 TTGTCCTCAAAGAGCCGGACGCA-TTTCGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2450364 CCATTGTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 8 0.11
42 31 0.42
44 3 0.04
45 27 0.36
46 5 0.07
ACGTcount: A:0.17, C:0.28, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2451053 original size:61 final size:61
Alignment explanation
Indices: 2450972--2451185 Score: 281
Period size: 61 Copynumber: 3.5 Consensus size: 61
2450962 TGGGGACGAA
*
2450972 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
* * * * *
2451033 TTGGTGGCAGCTTTTAGTCCTCAAAGAGCAGGGCGTCTTTTTCTTTTAAAGCCCAGGCA--AG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCA--CATGAG
* * *
2451094 TTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA-CCTTTTCTTTTCCAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACATGAG
* *
2451155 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAG
2451186 CATGCCTTTT
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
59 2 0.02
60 6 0.05
61 121 0.92
63 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
Found at i:2451195 original size:122 final size:122
Alignment explanation
Indices: 2450975--2451195 Score: 347
Period size: 122 Copynumber: 1.8 Consensus size: 122
2450965 GGACGAATTG
*
2450975 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
** *
2451040 CAGCTTTTAGTCCTCAAAGAGCAGGGCGTCTTTTTCTTTTAAAGCCCAGGCAAGTTA
66 CAGCTTTTAGTCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
* *
2451097 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCCAAGCCCACATGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTC-TTTCAAAGCCCACATGAGTTGGTG
*
2451161 GCA-CTTTTTAGTCCTCAAAGAGCAGCATGCCTTTT
65 GCAGC-TTTTAGTCCTCAAAGAGCAGCACGCCTTTT
2451196 CCTCTTCCCC
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
121 6 0.07
122 84 0.93
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
CAGCTTTTAGTCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAGGCAAGTTA
Found at i:2451256 original size:45 final size:45
Alignment explanation
Indices: 2451207--2451444 Score: 185
Period size: 43 Copynumber: 5.4 Consensus size: 45
2451197 CTCTTCCCCC
2451207 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* *
2451252 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * * *
2451294 TTGTCCTCAAAGAACAGGACGTATTTCATTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * *
2451337 TTGTCAGT-AAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTT
1 TTGTC-CTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * * * *
2451382 CTAGTCCTCAAAGAGTAGGACACATTTCGTTTTCCTT-TTTT-TC-T
1 -TTGTCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTCTTTTCCCTT
2451426 TTGTCCTCGAAA-AGCAGGA
1 TTGTCCTC-AAAGAGCAGGA
2451445 TGTACTCTTT
Statistics
Matches: 150, Mismatches: 29, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.04
42 26 0.17
43 36 0.24
44 11 0.07
45 36 0.24
46 27 0.18
47 7 0.05
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2451312 original size:42 final size:42
Alignment explanation
Indices: 2451207--2451333 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
2451197 CTCTTCCCCC
*
2451207 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
*
2451252 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2451294 TTGTCCTCAAAGAACAGGACGTA-TTTCATTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2451334 CCATTGTCAG
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
41 8 0.11
42 31 0.41
44 3 0.04
45 28 0.37
46 5 0.07
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2452162 original size:122 final size:122
Alignment explanation
Indices: 2451945--2452165 Score: 338
Period size: 122 Copynumber: 1.8 Consensus size: 122
2451935 GGACGAATTG
* * *
2451945 GTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
* **
2452010 CAGCTTTTAGCCCTTAAAGAGCAGGGCGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
66 CAGCTTTTAGCCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
*
2452067 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTC-TTTCAAAGCCCACACGAGTTGGTG
*
2452131 GCA-CTTTTTAGTCCTCAAAGAGCAGCACGCCTTTT
65 GCAGC-TTTTAGCCCTCAAAGAGCAGCACGCCTTTT
2452166 CCTCTTCCCC
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
121 6 0.07
122 83 0.93
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTCAAAGCCCACACGAGTTGGTGG
CAGCTTTTAGCCCTCAAAGAGCAGCACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
Found at i:2452164 original size:61 final size:61
Alignment explanation
Indices: 2451937--2452166 Score: 259
Period size: 61 Copynumber: 3.8 Consensus size: 61
2451927 AGGTATGGGG
* * * *
2451937 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCT-TTTCAAAGCCCAC
* * * * * * *
2451998 ATGAGTTGGTGGCAGCTTTTAGCCCTTAAAGAGCAGGGCGCCTTTTTCTTTT-AAAGCCCA-
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCTTTTCAAAGCCCAC
* *
2452058 AGCAAGTTAGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
1 A-CGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
* * * *
2452120 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGCACGCCTTTTC
1 ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTC
2452167 CTCTTCCCCC
Statistics
Matches: 138, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
60 10 0.07
61 119 0.86
62 8 0.06
63 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCAC
Found at i:2452278 original size:42 final size:42
Alignment explanation
Indices: 2452177--2452303 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
2452167 CTCTTCCCCC
* *
2452177 TTGTCCTCAAAGAGCAAGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
*
2452222 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2452264 TTGTCCTCAAAGAGCGGGACGCA-TTTCGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2452304 CCAGTGTCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 8 0.11
42 31 0.42
44 3 0.04
45 27 0.36
46 5 0.07
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2452465 original size:41 final size:40
Alignment explanation
Indices: 2452420--2452521 Score: 111
Period size: 41 Copynumber: 2.5 Consensus size: 40
2452410 CAGGATGTAC
*
2452420 TCTTTTTCACTTTGTCCTCAAGAAGC-AGGA-CACTTTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGCGA-GACCA-TTTCATTT
* *
2452461 TCTTTTTTCCTTTATCCTCAAGGAGCGAGACCTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCGAGACC-ATTTCATTT
2452503 TC-TTTTCCTTTGTCCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2452522 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
40 16 0.30
41 19 0.36
42 17 0.32
43 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.11, T:0.45
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCGAGACCATTTCATTT
Found at i:2452544 original size:42 final size:43
Alignment explanation
Indices: 2452420--2452544 Score: 104
Period size: 42 Copynumber: 3.0 Consensus size: 43
2452410 CAGGATGTAC
*
2452420 TCTTTTTCACTTTGTCCTCAAGAAGCA-GGACA-C-TTTCC-TTT
1 TCTTTTTC-CTTTGTCCTCAAAAAG-AGGGACACCTTTTCCATTT
* * * *
2452461 TCTTTTTTCCTTTATCCTC--AAGGAGCGAGACCTATTT-CATTT
1 TC-TTTTTCCTTTGTCCTCAAAAAGAGGGACACCT-TTTCCATTT
*
2452503 TC-TTTTCCTTTGTCCTCAAAAAGTGGGACACCTTTTCCATTT
1 TCTTTTTCCTTTGTCCTCAAAAAGAGGGACACCTTTTCCATTT
2452545 ATTTCCCTTC
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 15 0.23
41 15 0.23
42 29 0.45
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.43
Consensus pattern (43 bp):
TCTTTTTCCTTTGTCCTCAAAAAGAGGGACACCTTTTCCATTT
Found at i:2453000 original size:61 final size:61
Alignment explanation
Indices: 2452914--2453129 Score: 263
Period size: 61 Copynumber: 3.5 Consensus size: 61
2452904 TGAGGAAGAA
* * *
2452914 TTGGTGGCTCCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
* * * * * * *
2452975 TTGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
* * * **
2453036 TTAGTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACACGAG
* *
2453097 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2453130 TGCCTTTTCC
Statistics
Matches: 129, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
60 5 0.04
61 124 0.96
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2453137 original size:122 final size:122
Alignment explanation
Indices: 2452917--2453137 Score: 327
Period size: 122 Copynumber: 1.8 Consensus size: 122
2452907 GGAAGAATTG
* * * *
2452917 GTGGCTCCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
* *
2452982 CACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTTTTTTAAAGCCCACGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTTAAAGCCCACGCAAGTTA
* **
2453039 GTGGCACCTTTCAGTCCTCAAAGACCAGGACA-CATTTTCTTTTGGAAGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTC-TTTCAAAGCCCACACGAGTTGGTG
* *
2453103 GCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2453138 CCTCTTCCCC
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
121 6 0.07
122 81 0.93
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGACCAGGACATCATTTTCTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTTAAAGCCCACGCAAGTTA
Found at i:2453198 original size:45 final size:45
Alignment explanation
Indices: 2453149--2453397 Score: 171
Period size: 43 Copynumber: 5.7 Consensus size: 45
2453139 CTCTTCCCCC
*
2453149 TTGTCCTCAAAGAGCAGGACGCCCTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * *
2453194 TTGTCCTTAAAGAGAAGGATGCACTTTATTTTCC-TC-TTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
* * * *
2453236 TTGTCCTCAAAGAGCAGGACGCATTTCGTTT--TCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTC-CCTT
* * * * * * *
2453279 TTGTCATTAACGAGCAGGATGCTCTTCATTTCCTTTTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
* * * * *
2453324 CTAGACCTCAAAGAGCAGGACACATTTCATTTTCCTT-TTTT-TCTT
1 -TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
*
2453369 TT-TCCTCGAAA-AGCAGGACGTAC-TCATTT
1 TTGTCCTC-AAAGAGCAGGACGCACTTCATTT
2453398 TCACTTTGTC
Statistics
Matches: 154, Mismatches: 38, Indels: 28
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.01
41 9 0.06
42 28 0.18
43 37 0.24
44 9 0.06
45 35 0.23
46 28 0.18
47 7 0.05
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCCCTT
Found at i:2453248 original size:42 final size:42
Alignment explanation
Indices: 2453149--2453388 Score: 134
Period size: 42 Copynumber: 5.5 Consensus size: 42
2453139 CTCTTCCCCC
* *
2453149 TTGTCCTCAAAGAGCAGGACGCCCTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
* * *
2453194 TTGTCCTTAAAGAGAAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2453236 TTGTCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCT-TTTCTCCA
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT--T
* * * * * * *
2453279 TTGTCATTAACGAGCAGGATGCTCTTCA-TTTCCTTTTTTTCTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC--TCTTTCT-T
* * *
2453323 TCTAGACCTCAAAGAGCAGGACACA-TTTCATTTTCCTTTTTTTCTT
1 T-T-GTCCTCAAAGAGCAGGACGCACTTT-ATTTTCC--TCTTTCTT
2453369 TT-TCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2453389 TACTCATTTT
Statistics
Matches: 154, Mismatches: 28, Indels: 28
0.73 0.13 0.13
Matches are distributed among these distances:
41 8 0.05
42 35 0.23
43 30 0.19
44 11 0.07
45 34 0.22
46 22 0.14
47 14 0.09
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2453979 original size:61 final size:61
Alignment explanation
Indices: 2453880--2454100 Score: 259
Period size: 61 Copynumber: 3.6 Consensus size: 61
2453870 AGGTATGGGG
* *
2453880 ATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCAC
1 ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
* * * *
2453941 ATGAATTGGTGGCCCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCA-
1 ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
* * * *
2454001 A-GCAAGTTAGTGGCACCTTTCAGTCCTCAAAGAGCAAGACA-CATTTTCTTTTCAATGCCCAC
1 ATG-AA-TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCAC
* * * * *
2454063 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGA
1 ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2454101 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
59 1 0.01
60 9 0.07
61 122 0.90
62 2 0.01
63 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (61 bp):
ATGAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
Found at i:2454108 original size:122 final size:122
Alignment explanation
Indices: 2453888--2454108 Score: 318
Period size: 122 Copynumber: 1.8 Consensus size: 122
2453878 GGATGAATTG
* * * *
2453888 GTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCATTTTCTTTCAAAGCCCACACGAATTGGTGG
* *
2453953 CCCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAAGCAAGTTA
66 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
* * *
2454010 GTGGCACCTTTCAGTCCTCAAAGAGCAAGACA-CATTTTCTTTTCAATGCCCACACGAGTTGGTG
1 GTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCATTTTC-TTTCAAAGCCCACACGAATTGGTG
* * *
2454074 GCACTTTTTAGTCCTCAAAGAGTAGGATGCCTTTT
65 GCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2454109 CCTCCTCCCC
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 6 0.07
122 80 0.93
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (122 bp):
GTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCATTTTCTTTCAAAGCCCACACGAATTGGTGG
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCAAGCAAGTTA
Found at i:2454170 original size:45 final size:44
Alignment explanation
Indices: 2454120--2454359 Score: 181
Period size: 43 Copynumber: 5.5 Consensus size: 44
2454110 CTCCTCCCCC
2454120 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TTTTTT-CCTT
* * **
2454165 TTGTCCTCAAAGAGCAGGACACACTTTATTTTCC-ACTTT-CTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTTTCCTT
** * * * *
2454207 TTGTCCTCAAAGAGTTGGACGTATTTCATTTTCCTTTTCTCC-A
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTTTCCTT
* * * *
2454250 TTGTTCTTAAAGAGCAAGACGCTCTTCA-TTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TTTTTT-CCTT
* * * * **
2454295 CTAGACCTCAAAGAGCAGGACACATTTTGTTTTCCTGTTTTT-C-T
1 -TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCT-TTTTTCCTT
2454339 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2454360 TACTCTTTTT
Statistics
Matches: 148, Mismatches: 37, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
42 36 0.24
43 41 0.28
44 10 0.07
45 27 0.18
46 24 0.16
47 10 0.07
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTTTCCTT
Found at i:2454960 original size:61 final size:58
Alignment explanation
Indices: 2454852--2455192 Score: 288
Period size: 61 Copynumber: 5.6 Consensus size: 58
2454842 AGGTGTGGGG
* * * * *
2454852 ACGAATTGGGGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCA-GAC-GCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2454913 ACGTGTTGGTGGCACCATTTAGTGCTCAAATAGCAGGATGTCTTTTTCTTTTAACGCGCA-
1 ACGAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCA-GACG-CTTTTTCTTTCAAAGCCCAC
* * * * * *
2454973 AGCAAGTTGGTGGCAGCTTTCAGTCCTAAAAAAGCCAGACGCCTTTTCTTTTCAAAGCCCTC
1 A-CGAGTTGGTGGCACCTTT-AGTCCTCAAAGAG-CAGACGCTTTTTC-TTTCAAAGCCCAC
* *
2455035 ACGAGTTGGTGGCACCTTTTAGTCCTCATAGAGCTAGACGGCTTTTTCTTTCAAAGCCCAT
1 ACGAGTTGGTGGCACC-TTTAGTCCTCAAAGAGC-AGAC-GCTTTTTCTTTCAAAGCCCAC
* * * *
2455096 GCAAGTTGGTGGCACCTTTCAGTCCTCAAAGTGCAAGACGCCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTT-AGTCCTCAAAGAGC-AGACGCTTTTTC-TTTCAAAGCCCAC
* *
2455157 ACGAGTTGGTGGCACATTTTAGTCCTTAAAGAGCAG
1 ACGAGTTGGTGGCAC-CTTTAGTCCTCAAAGAGCAG
2455193 GGCGCCTTTT
Statistics
Matches: 223, Mismatches: 44, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
60 23 0.10
61 182 0.82
62 18 0.08
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (58 bp):
ACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGACGCTTTTTCTTTCAAAGCCCAC
Found at i:2455100 original size:122 final size:122
Alignment explanation
Indices: 2454895--2455202 Score: 404
Period size: 122 Copynumber: 2.5 Consensus size: 122
2454885 TAGGACATCT
* * * * * *
2454895 TTTTC-TTTCAAAGCCCACACGTGTTGGTGGCACCATTTAGTGCTCAAATAGCAGGATGTCTTTT
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTT
* * * * *
2454959 TCTTTTAACGCGCAAGCAAGTTGGTGGCAGCTTTCAGTCCTAAAAAAGCCAGACGCC
66 TCTTTCAAAGCCCAAGCAAGTTGGTGGCACCTTTCAGTCCTAAAAAAGCAAGACGCC
* *
2455016 TTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCATAGAGCTA-GACGGCTTT
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGC-AGGACGGCTTT
* * **
2455080 TTCTTTCAAAGCCCATGCAAGTTGGTGGCACCTTTCAGTCCTCAAAGTGCAAGACGCC
65 TTCTTTCAAAGCCCAAGCAAGTTGGTGGCACCTTTCAGTCCTAAAAAAGCAAGACGCC
* * * *
2455138 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACATTTTAGTCCTTAAAGAGCAGGGCGCCTTTT
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTT
2455203 CCTCTTCCCC
Statistics
Matches: 161, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
121 6 0.04
122 154 0.96
123 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (122 bp):
TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTT
TCTTTCAAAGCCCAAGCAAGTTGGTGGCACCTTTCAGTCCTAAAAAAGCAAGACGCC
Found at i:2455400 original size:46 final size:45
Alignment explanation
Indices: 2455214--2455455 Score: 239
Period size: 46 Copynumber: 5.4 Consensus size: 45
2455204 CTCTTCCCCC
* * *
2455214 TTGTCTTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTT
* * * *
2455259 TTGCCCTCAAAGAGCAAGACGCACTTTATTTTCC-T-TTTT--CTT
1 TTGTCCTCAAAGAGCAGGACGCTCTTCA-TTTCCTTCTTTTCCCTT
* * *
2455301 TTGTCCTCAAAGAGCAGGACGCAT-TTCGTTT--TCCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGC-TCTTCATTTCCTTCTTTTCCCTT
* *
2455344 TTGTCCTCAAAGAGTAGGACGCTCTTTATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTT
* * *
2455389 CTAGTCCTCAAAGAGCTA-GACGTTCTTCATTTCCTTCTTTTCCGTT
1 -TTGTCCTCAAAGAGC-AGGACGCTCTTCATTTCCTTCTTTTCCCTT
*
2455435 CTAGTCCTCAAAGAGCAGGAC
1 -TTGTCCTCAAAGAGCAGGAC
2455456 ACATTTCATT
Statistics
Matches: 164, Mismatches: 21, Indels: 23
0.79 0.10 0.11
Matches are distributed among these distances:
41 7 0.04
42 26 0.16
43 29 0.18
44 4 0.02
45 35 0.21
46 62 0.38
47 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (45 bp):
TTGTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTT
Found at i:2455464 original size:46 final size:44
Alignment explanation
Indices: 2455214--2455497 Score: 236
Period size: 46 Copynumber: 6.5 Consensus size: 44
2455204 CTCTTCCCCC
* * *
2455214 TTGTCTTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTT-CCTT
* *
2455259 TTGCCCTCAAAGAGCAAGACGCACTTT-ATTTTCC-T-TTTT-CTT
1 TTGTCCTCAAAGAGCAGGACGCA-TTTCA-TTTCCTTCTTTTCCTT
* *
2455301 TTGTCCTCAAAGAGCAGGACGCATTTCGTTT--TCCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTC-CTT
* *
2455344 TTGTCCTCAAAGAGTAGGACGC-TCTTTATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTCCTTCTTTT-CCTT
* *
2455389 CTAGTCCTCAAAGAGCTA-GACG-TTCTTCATTTCCTTCTTTTCCGTT
1 -TTGTCCTCAAAGAGC-AGGACGCAT-TTCATTTCCTTCTTTTCC-TT
* *
2455435 CTAGTCCTCAAAGAGCAGGACACATTTCATTTTCC-T-TTTT--TT
1 -TTGTCCTCAAAGAGCAGGACGCATTTCA-TTTCCTTCTTTTCCTT
2455477 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2455498 TACTCTTTTT
Statistics
Matches: 200, Mismatches: 20, Indels: 42
0.76 0.08 0.16
Matches are distributed among these distances:
41 25 0.12
42 30 0.15
43 29 0.14
44 4 0.02
45 37 0.19
46 68 0.34
47 7 0.04
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCCTT
Found at i:2455505 original size:135 final size:130
Alignment explanation
Indices: 2455214--2455497 Score: 351
Period size: 130 Copynumber: 2.2 Consensus size: 130
2455204 CTCTTCCCCC
* * * * *
2455214 TTGTCTTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGCCCTCAAAGAGCAAGAC
1 TTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTTTAGCCCTCAAAGAGCAAGAC
* * * *
2455279 GCACTTTATTTTCCTTTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCTT
66 GCACTTCATTTTCCTTTTTCTTTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTCTCTT
* * *
2455344 TTGTCCTCAAAGAGTAGGACGCTCTTTATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCTAGA
1 TTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTT-TAGCCCTCAAAGAGCAAGA
**
2455409 CGTTCTTCA-TTTCCTTCTTTTCCGTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTT
65 CGCACTTCATTTTCC-T-TTTT-C-TT-TAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTT
2455473 T-T-TT
125 TCTCTT
2455477 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGCAGGACG
2455498 TACTCTTTTT
Statistics
Matches: 134, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
130 47 0.35
131 23 0.17
132 4 0.03
133 19 0.14
134 6 0.04
135 35 0.26
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (130 bp):
TTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTTTAGCCCTCAAAGAGCAAGAC
GCACTTCATTTTCCTTTTTCTTTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTCTCTT
Found at i:2456095 original size:61 final size:61
Alignment explanation
Indices: 2455989--2456209 Score: 291
Period size: 61 Copynumber: 3.6 Consensus size: 61
2455979 AGGTATGGGG
* ** * **
2455989 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCAC
* * *
2456050 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCGC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCAC
* * * *
2456111 GCAAGGTGGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCAC
* *
2456172 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGTGCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2456210 TGTCCTTTCC
Statistics
Matches: 137, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
60 5 0.04
61 132 0.96
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCAC
Found at i:2456278 original size:45 final size:45
Alignment explanation
Indices: 2456223--2456422 Score: 155
Period size: 45 Copynumber: 4.5 Consensus size: 45
2456213 CCTTTCCTCA
* **
2456223 TCCCTCTTGTCCTCAAAGAGCAGGTCATACTTCATTTCCTTCTTT
1 TCCCTTTTGTCCTCAAAGAGCAGGTCGCACTTCATTTCCTTCTTT
* * *
2456268 TCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTTATTTTCC-TC-TT
1 TCCCTTTTGTCCTCAAAGAGCAGGTCGCACTTCA-TTTCCTTCTTT
* * * * *
2456312 T--CTTTTGTCCTGAAAGAGCAGGACGCATTTCGTTT--TCCTTT
1 TCCCTTTTGTCCTCAAAGAGCAGGTCGCACTTCATTTCCTTCTTT
* * * * *
2456353 TCTCC-TTTGTCCTTAAAGAGCAGGAT-GCTCTTTATTTACTTTTTT
1 TC-CCTTTTGTCCTCAAAGAGCAGG-TCGCACTTCATTTCCTTCTTT
*
2456398 TCCCTTCTAGTCCTCAAAGAGCAGG
1 TCCCTT-TTGTCCTCAAAGAGCAGG
2456423 ACACGTTTCA
Statistics
Matches: 121, Mismatches: 23, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 25 0.21
43 25 0.21
44 6 0.05
45 37 0.31
46 21 0.17
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (45 bp):
TCCCTTTTGTCCTCAAAGAGCAGGTCGCACTTCATTTCCTTCTTT
Found at i:2456348 original size:42 final size:41
Alignment explanation
Indices: 2456229--2456389 Score: 135
Period size: 42 Copynumber: 3.8 Consensus size: 41
2456219 CTCATCCCTC
* ** * *
2456229 TTGTCCTCAAAGAGCAGGTCATACTTCATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTT--TCCTTTT--CTT
* *
2456274 TTGTCCTCAAAGAGTAGGGCGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCT-TTTCTT
* *
2456316 TTGTCCTGAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTTCT--T
* * *
2456359 TTGTCCTTAAAGAGCAGGATGCTCTTTATTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTT
2456390 ACTTTTTTTC
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 8 0.08
42 30 0.31
43 27 0.28
44 6 0.06
45 26 0.27
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (41 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTT
Found at i:2456371 original size:43 final size:43
Alignment explanation
Indices: 2456229--2456454 Score: 158
Period size: 46 Copynumber: 5.2 Consensus size: 43
2456219 CTCATCCCTC
* ** * *
2456229 TTGTCCTCAAAGAGCAGGTCATACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTT-TTCT-CC-T
* *
2456274 TTGTCCTCAAAGAGTAGGGCGCACTTTATTTTCCTCTTTCT--T
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCT-TTTCTCCT
* *
2456316 TTGTCCTGAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTTCTCCT
* * * * * *
2456359 TTGTCCTTAAAGAGCAGGATGCTCTTTATTTACTTTTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCT-CCT
* * *
2456403 TCTAGTCCTCAAAGAGCAGGA--CACGTTTCATTTTCATTTTTTTCT
1 T-T-GTCCTCAAAGAGCAGGACGCAC-TTT-ATTTTCCTTTTCTCCT
2456448 TTGTCCT
1 TTGTCCT
2456455 TGAAAAGTAG
Statistics
Matches: 148, Mismatches: 22, Indels: 24
0.76 0.11 0.12
Matches are distributed among these distances:
41 8 0.05
42 28 0.19
43 35 0.24
44 10 0.07
45 30 0.20
46 36 0.24
47 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.43
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCT
Found at i:2456443 original size:46 final size:42
Alignment explanation
Indices: 2456229--2456538 Score: 139
Period size: 43 Copynumber: 7.4 Consensus size: 42
2456219 CTCATCCCTC
* *
2456229 TTGTCCTCAAAGAGCAGGTCA-TACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACACT--TTCATTTTCATT-TTTT-CC-T
* * * * *
2456274 TTGTCCTCAAAGAGTAGGGCGCACTTT-ATTTTC-CTCTTTCTT
1 TTGTCCTCAAAGAGCA-GG-ACACTTTCATTTTCATTTTTTCCT
* * * * *
2456316 TTGTCCTGAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACAC-TTTCATTTTCATTTTTTCCT
* * * *
2456359 TTGTCCTTAAAGAGCAGGATGCTCTTT-ATTTACTTTTTTTCCCT
1 TTGTCCTCAAAGAGCAGGA--CACTTTCATTTTCATTTTTT-CCT
*
2456403 TCTAGTCCTCAAAGAGCAGGACACGTTTCATTTTCATTTTTTTCT
1 T-T-GTCCTCAAAGAGCAGGACAC-TTTCATTTTCATTTTTTCCT
* * * *
2456448 TTGTCCTTGAAA-AGTAGG--A----CGTGTTC--TTTTTCACT
1 TTGTCC-TCAAAGAGCAGGACACTTTCATTTTCATTTTTTC-CT
* *
2456483 TTGTCCTC-AGGAAGCAGGACACTTTCCTTTTC-TTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACACTTTCATTTTCATTTTTTCCT
*
2456524 TTGTCCTCAAGGAGC
1 TTGTCCTCAAAGAGC
2456539 GAGACCTATT
Statistics
Matches: 204, Mismatches: 35, Indels: 56
0.69 0.12 0.19
Matches are distributed among these distances:
33 1 0.00
34 6 0.03
35 13 0.06
36 5 0.02
37 1 0.00
40 2 0.01
41 24 0.12
42 29 0.14
43 42 0.21
44 17 0.08
45 26 0.13
46 35 0.17
47 2 0.01
48 1 0.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACACTTTCATTTTCATTTTTTCCT
Found at i:2457058 original size:61 final size:60
Alignment explanation
Indices: 2456961--2457178 Score: 251
Period size: 61 Copynumber: 3.6 Consensus size: 60
2456951 GTATGGGGAT
* *
2456961 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACA
1 GAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACA
* * * *
2457021 TGAATTGGTGGCCCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC-
1 -GAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACA
* * * * *
2457081 GCAAGTTAGTGGCACCTTTCAGTCCTCAAAGAGCAAGATA-CATTTTCTTTTCAACGCCCACA
1 G-AA-TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACA
* * * *
2457143 GAGTTGGTGGCACTTTTTAGTCCTCAAAGGGCAGGA
1 GAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
2457179 TGCCTTTTCC
Statistics
Matches: 132, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
59 1 0.01
60 36 0.27
61 94 0.71
62 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (60 bp):
GAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACA
Found at i:2457257 original size:45 final size:43
Alignment explanation
Indices: 2457198--2457364 Score: 144
Period size: 42 Copynumber: 3.9 Consensus size: 43
2457188 CTCCTCCCCC
*
2457198 TTGTCCTCAAAGAGCAAGACGCACTTCATTTCTTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAAGACGCACTTCA-TT-TTCCTTTTCCCTT
* * *
2457243 TTGTCCTCAAAGAGCAGGACACACTTTATTTTCCTCTTT--CTT
1 TTGTCCTCAAAGAGCAAGACGCACTTCATTTTCCT-TTTCCCTT
*** * *
2457285 TTGTCCTCAAAGAGTTGGACGCATTTCATTTTCCTTTTCTCC-G
1 TTGTCCTCAAAGAGCAAGACGCACTTCATTTTCCTTTTC-CCTT
* * * * *
2457328 TTGTTCTTAAAGAGCTAGACGCTCTTCA-ATTCCTTTT
1 TTGTCCTCAAAGAGCAAGACGCACTTCATTTTCCTTTT
2457365 TTTCCCTTCT
Statistics
Matches: 101, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 3 0.03
42 41 0.41
43 26 0.26
44 6 0.06
45 25 0.25
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAAGACGCACTTCATTTTCCTTTTCCCTT
Found at i:2457826 original size:122 final size:122
Alignment explanation
Indices: 2457672--2457979 Score: 404
Period size: 122 Copynumber: 2.5 Consensus size: 122
2457662 CGAGACATCT
* * * * *
2457672 TTTTC-TTTCAAAGCCCACATGAATTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGACGTCTTTT
1 TTTTCTTTTCAAAGCCCTCAAGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
* * * * * **
2457736 TCTTTTAACGCGCAGGCAAGTTGGTGGCAGCTTTCAGTCCTAAAAGAGCTGGACGCC
66 TCTTTCAAAGCCCACGCAAGTTGGTGGCAACTTTCAGTCCTAAAAGAGCAAGACGCC
* * *
2457793 TTTTCTTTTCAAAGCCCTCAAGAGTTGGCGGCACCTTTTAGTCCTCATAGAGCTGGACGTCTTTT
1 TTTTCTTTTCAAAGCCCTCAAGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
* *
2457858 TCTTTCAAAGCCCACGCAAGTTGGTGGCAACTTTTAGTCCTCAAAGAGCAAGACGCC
66 TCTTTCAAAGCCCACGCAAGTTGGTGGCAACTTTCAGTCCTAAAAGAGCAAGACGCC
* * * *
2457915 ATTTCTTTTCAAAGCCCAT-ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGGCTTT
1 TTTTCTTTTCAAAGCCC-TCAAGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTT
2457979 T
65 T
2457980 CCACGTCCCC
Statistics
Matches: 161, Mismatches: 24, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
121 5 0.03
122 155 0.96
123 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (122 bp):
TTTTCTTTTCAAAGCCCTCAAGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
TCTTTCAAAGCCCACGCAAGTTGGTGGCAACTTTCAGTCCTAAAAGAGCAAGACGCC
Found at i:2457947 original size:183 final size:182
Alignment explanation
Indices: 2457651--2457980 Score: 443
Period size: 183 Copynumber: 1.8 Consensus size: 182
2457641 CACCTTACAA
*
2457651 TCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCACCTTTTAGTCCT
1 TCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACA-GAATTGGTGGCAACTTTTAGTCCT
** * * *
2457716 CAAAAAGCAAGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTGGTGGCAGC-TTTCAGTCCTAAA
65 CAAAAAGCAAGACGTCCATTTCTTTTAAAGCCCAGACAAGTTGGTGGCA-CTTTTCAGTCCTAAA
*
2457780 AGAGCTGGACGCCTTTTCTTTTCAAAGCCCTCAAGAGTTGGCGGCACCTTTTAG
129 AGAGCAGGACGCCTTTTCTTTTCAAAGCCCTCAAGAGTTGGCGGCACCTTTTAG
* *
2457834 TCCTCATAGAGCTG-GACGTCTTTTTCTTTCAAAGCCCAC-GCAAGTTGGTGGCAACTTTTAGTC
1 TCCTCAAAGAGC-GAGACATCTTTTTCTTTCAAAGCCCACAG-AA-TTGGTGGCAACTTTTAGTC
* * * * *
2457897 CTCAAAGAGCAAGACG-CCATTTCTTTTCAAAGCCCATACGAGTTGGTGGCACTTTTTAGTCCTC
63 CTCAAAAAGCAAGACGTCCATTTCTTTT-AAAGCCCAGACAAGTTGGTGGCACTTTTCAGTCCTA
*
2457961 AAAGAGCAGGACGGCTTTTC
127 AAAGAGCAGGACGCCTTTTC
2457981 CACGTCCCCC
Statistics
Matches: 127, Mismatches: 15, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
181 1 0.01
182 12 0.09
183 113 0.89
184 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (182 bp):
TCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACAGAATTGGTGGCAACTTTTAGTCCTC
AAAAAGCAAGACGTCCATTTCTTTTAAAGCCCAGACAAGTTGGTGGCACTTTTCAGTCCTAAAAG
AGCAGGACGCCTTTTCTTTTCAAAGCCCTCAAGAGTTGGCGGCACCTTTTAG
Found at i:2457968 original size:61 final size:60
Alignment explanation
Indices: 2457672--2457980 Score: 309
Period size: 61 Copynumber: 5.1 Consensus size: 60
2457662 CGAGACATCT
* * * * *
2457672 TTTTC-TTTCAAAGCCCACATGAATTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGACGTCT
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA-CTTTTAGTCCTCAAAGAGCAGGACG-CC
* * ** * * * *
2457733 TTTTCTTTT-AACGCGCAGGCAAGTTGGTGGCAGCTTTCAGTCCTAAAAGAGCTGGACGCC
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA-CTTTTAGTCCTCAAAGAGCAGGACGCC
* * * * * *
2457793 TTTTCTTTTCAAAGCCCTCAAGAGTTGGCGGCACCTTTTAGTCCTCATAGAGCTGGACGTC
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA-CTTTTAGTCCTCAAAGAGCAGGACGCC
* * *
2457854 TTTT-TCTTTCAAAGCCCACGCAAGTTGGTGGCAACTTTTAGTCCTCAAAGAGCAAGACGCC
1 TTTTCT-TTTCAAAGCCCACACGAGTTGGTGGC-ACTTTTAGTCCTCAAAGAGCAGGACGCC
* * *
2457915 ATTTCTTTTCAAAGCCCATACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGGC
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC-TTTTAGTCCTCAAAGAGCAGGACGCC
2457976 TTTTC
1 TTTTC
2457981 CACGTCCCCC
Statistics
Matches: 199, Mismatches: 43, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
60 13 0.07
61 181 0.91
62 5 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (60 bp):
TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTAGTCCTCAAAGAGCAGGACGCC
Found at i:2458192 original size:46 final size:46
Alignment explanation
Indices: 2458129--2458253 Score: 171
Period size: 46 Copynumber: 2.7 Consensus size: 46
2458119 CTTTGTCCTT
* *
2458129 AAAGAGTAGGACACTCTTCATTTCCTTCTTTTCCCTTGTAGTCCGC
1 AAAGAGCAGGACACTCTTCATTTCCTTCTTTTCCCTTCTAGTCCGC
* * *
2458175 AAGGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCTC
1 AAAGAGCAGGACACTCTTCATTTCCTTCTTTTCCCTTCTAGTCCGC
*
2458221 AAAGAGCAGGACACAT-TTCATTTTCCTTTTTTT
1 AAAGAGCAGGACAC-TCTTCA-TTTCCTTCTTTT
2458254 TGTCCTCGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 57 0.83
47 12 0.17
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.38
Consensus pattern (46 bp):
AAAGAGCAGGACACTCTTCATTTCCTTCTTTTCCCTTCTAGTCCGC
Found at i:2458199 original size:130 final size:134
Alignment explanation
Indices: 2457991--2458250 Score: 318
Period size: 130 Copynumber: 2.0 Consensus size: 134
2457981 CACGTCCCCC
* * * *
2457991 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTTTCCCTCAAAGAGCAAGGT
1 TTGTCCTCAAAGAGTAGGACACACTTCATTTCCTTCTTTTCACTTTGTCCCGCAAAGAGCAAGGC
* * * *
2458056 GCACTTTATTTTCC-TC-TTT-CTT-TTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTC
66 GCACTTCATTTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTC
2458117 TCCT
131 TCCT
* * * *
2458121 TTGTCCTTAAAGAGTAGGACACTCTTCATTTCCTTCTTTTCCCTTGTAGT-CCGCAAGGAGC-AG
1 TTGTCCTCAAAGAGTAGGACACACTTCATTTCCTTCTTTTCACTT-T-GTCCCGCAAAGAGCAAG
*
2458184 GACGCTCTTCA-TTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCT
64 G-CGCACTTCATTTTCCTTCTTTT-CCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCT
2458248 TTT
127 TTT
2458251 TTTTGTCCTC
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
130 49 0.45
131 18 0.17
132 4 0.04
134 3 0.03
135 35 0.32
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (134 bp):
TTGTCCTCAAAGAGTAGGACACACTTCATTTCCTTCTTTTCACTTTGTCCCGCAAAGAGCAAGGC
GCACTTCATTTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTC
TCCT
Found at i:2458985 original size:61 final size:61
Alignment explanation
Indices: 2458789--2458995 Score: 238
Period size: 61 Copynumber: 3.4 Consensus size: 61
2458779 CACCTTGCAA
** * *
2458789 TCCTCAAAGAGC-GAGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAG-GACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
* * * * * * * *
2458850 TCCTCAAAAAGCAAGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
* *
2458911 TCCTCAAAGAGCAGGACGCCTTTTAT-TTTCGAAGCCCACACGAGTTGGTGGCACTTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTT-TCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
* *
2458972 TCCTCAAAGAGCAGCATGCCTTTT
1 TCCTCAAAGAGCAGGACGCCTTTT
2458996 CCTCTTCCCC
Statistics
Matches: 122, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
61 121 0.99
62 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (61 bp):
TCCTCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
Found at i:2459055 original size:45 final size:45
Alignment explanation
Indices: 2459000--2459246 Score: 176
Period size: 43 Copynumber: 5.6 Consensus size: 45
2458990 CCTTTTCCTC
* *
2459000 TTCCCCTTTGTCCTCAAAGAGAAGGACGCACTTCATTTCCTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTT
* * *
2459045 TTCCCTTTTGTCCTGAAAGAGAAGGACGCACTTTATTTTCC-TC-T
1 TTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTT
* * *
2459089 TT--CTTTTGTCCTCAAAGAGCAGGAAGCATTTCGTTTTCCTT-TT
1 TTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTCTT
* * * * * *
2459132 CTCCAC---TGTCCTTAACGAGCAGGATGCTCTTCATTTCCTTTTT
1 TTCC-CTTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTT
* * * * *
2459175 TTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCGTTTTCCTT-TT
1 TTCCCTT-TTGTCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTCTT
*
2459221 TT-TCTTTT-TCCTCGAAA-AGCAGGACG
1 TTCCCTTTTGTCCTC-AAAGAGCAGGACG
2459247 TGTTCTTTTT
Statistics
Matches: 158, Mismatches: 30, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
42 38 0.24
43 41 0.26
44 7 0.04
45 37 0.23
46 28 0.18
47 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (45 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTT
Found at i:2459126 original size:42 final size:41
Alignment explanation
Indices: 2458991--2459133 Score: 144
Period size: 42 Copynumber: 3.3 Consensus size: 41
2458981 AGCAGCATGC
* * *
2458991 CTTTTCCTCTTCCCCTTTGTCCTCAAAGAGAAGGACGCACTT
1 CTTTTCCTCTT-TCTTTTGTCCTCAAAGAGAAGGACGCATTT
* *
2459033 CATTTCCTTCTTTTCCCTTTTGTCCTGAAAGAGAAGGACGCACTTT
1 CTTTTCC-TC-TTT--CTTTTGTCCTCAAAGAGAAGGACGCA-TTT
* * *
2459079 ATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGAAGCATTT
1 CTTTTCCTCTTTCTTTTGTCCTCAAAGAGAAGGACGCATTT
2459120 CGTTTTCCT-TTTCT
1 C-TTTTCCTCTTTCT
2459134 CCACTGTCCT
Statistics
Matches: 84, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
41 8 0.10
42 36 0.43
43 2 0.02
44 5 0.06
45 26 0.31
46 7 0.08
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (41 bp):
CTTTTCCTCTTTCTTTTGTCCTCAAAGAGAAGGACGCATTT
Found at i:2459221 original size:46 final size:42
Alignment explanation
Indices: 2459098--2459222 Score: 101
Period size: 46 Copynumber: 2.8 Consensus size: 42
2459088 TTTCTTTTGT
* *
2459098 CCTCAAAGAGCAGGAAGCATTTCGTTTTCCTTTTCTCCACTGT
1 CCTCAAAGAGCAGGAA-CATTTCGTTTTCCTTTTTTCCACTGA
* * * * *
2459141 CCTTAACGAGCAGGATGC-TCTTC-ATTTCCTTTTTTTCCCTTCTAGA
1 CCTCAAAGAGCAGGA-ACAT-TTCGTTTTCC-TTTTTT-CC-ACT-GA
2459187 CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTT
1 CCTCAAAGAGCAGGA-ACATTTCGTTTTCCTTTTTT
2459223 TCTTTTTCCT
Statistics
Matches: 62, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
42 6 0.10
43 22 0.35
44 2 0.03
45 2 0.03
46 24 0.39
47 6 0.10
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.38
Consensus pattern (42 bp):
CCTCAAAGAGCAGGAACATTTCGTTTTCCTTTTTTCCACTGA
Found at i:2459294 original size:41 final size:41
Alignment explanation
Indices: 2459249--2459351 Score: 106
Period size: 41 Copynumber: 2.5 Consensus size: 41
2459239 GCAGGACGTG
2459249 TTCTTTTTCACTTTGTCCTCAAGAAGC-AGGACACT-TTTC-TT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCGA-GAC-CTATTTCATT
* * *
2459290 TTCTTTTTTGCTTTGTCCTCACGGAGCGAGACCTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATT
*
2459332 TT-ATTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2459352 AAAGTGGGAC
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
40 17 0.33
41 25 0.48
42 10 0.19
ACGTcount: A:0.17, C:0.24, G:0.13, T:0.47
Consensus pattern (41 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCATT
Found at i:2459842 original size:61 final size:61
Alignment explanation
Indices: 2459742--2459955 Score: 277
Period size: 61 Copynumber: 3.5 Consensus size: 61
2459732 TAGGGACGAA
** * * *
2459742 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACATAAG
* * **
2459803 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCTCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACATAAG
* * * *
2459864 TTAGTGTCACCTTTTTGTCCTCAAAGAGCAGGACG-CCTTTTCGTTTCAAAGCCCACATAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACATAAG
* *
2459925 TTGGTGGCACTTTTTAGTCCTCAAAAAGCAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAG
2459956 CATGCCTTTT
Statistics
Matches: 130, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACATAAG
Found at i:2460005 original size:970 final size:969
Alignment explanation
Indices: 2458178--2461183 Score: 4998
Period size: 970 Copynumber: 3.1 Consensus size: 969
2458168 AGTCCGCAAG
* *
2458178 GAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATT
1 GAGCAGGACGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCATT
** *
2458243 TTCC--TTTTT-TTTGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGTCCTCAAGAAACAG
66 TTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
*
2458305 GACACTTTCCTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTATTTTCCTT
131 GACACTTTCCTTTTCTTTTTTCCTTTGTCCTCACGGAGCGAGACCTATTTCATTTTATTTTCCTT
2458370 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAG
196 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAG
* *
2458435 CACCCGAAAAGCCCACACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTCTC
261 CACCCAAAAAGCCCACACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATC
2458500 TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAA-CAAAAAAAAAA
326 TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAA
2458564 TTTTTTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAA
391 ----TTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAA
*
2458629 ATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCGAAAGAGGGGCAGCTGTAGA
452 ATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGA
*
2458694 CACCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCTTTACTAGATGGAGGGGTTGAAAG
517 CACCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAG
* * * * * *
2458759 GTACGGGGATGAAATGATGGCACCTTGCAATCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGC
582 GTATGGGGATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGC
* * *
2458824 CCACATGAATTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGACGTCTTTTTCTTTTAAAGCCCAC
647 CCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
* *
2458889 GCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTATTTTCGAAGCCCACACGA
712 GCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGA
2458954 GTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGCATGCCTTTTCCTCTTCCC-CTTTGTCCTCAAA
777 GTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGCATGCCTTTTCCTCTTCCCTC-TTGTCCTCAAA
* * * *
2459018 GAGAAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTGAAAGAGAAGGACGCACTTTATTT
841 GAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGAAGG-CGCACTTTATTT
* * *
2459083 TCCTCTTTCTTTTGTCCTCAAAGAGCAGGAAGCATTTCGTTTTCCTTTTCTCCACTGTCCTTAAC
905 TCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCATTGTCCTTAAA
* *
2459148 GAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCGTT
1 GAGCAGGACGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCATT
*
2459213 TTCCTTTTTTTCTTTTTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
66 TTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
* *
2459278 GACACTTTTCTTTTCTTTTTTGCTTTGTCCTCACGGAGCGAGACCTATTTCATTTTATTTTCCTT
131 GACACTTTCCTTTTCTTTTTTCCTTTGTCCTCACGGAGCGAGACCTATTTCATTTTATTTTCCTT
*
2459343 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCGTCCTAAAGTTTGCATAAGTTGGCAG
196 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAG
*
2459408 CACCCAAAAAGCCCAAACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATC
261 CACCCAAAAAGCCCACACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATC
2459473 TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAA
326 TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAA
* * *
2459538 TTGAATTTCGTCCTTTTACATGCATTTAGCTAAGAATTCTTTTTTTTCCTTCACGGACGAAATGG
391 TTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGG
* * * *
2459603 TGTCTTTTGTTTTTGCCCTATTCCTAATACTCAAAAACAGCCAAAGAGGGCCAGCTGTAGACGCC
456 TGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACC
*
2459668 TCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGCTTGAAAGGTAT
521 TCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTAT
* *
2459733 AGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCAC
586 GGGGATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCAC
*
2459798 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCTCACGCAA
651 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAA
* * **
2459863 GTTAGTGTCACCTTTTTGTCCTCAAAGAGCAGGACGCCTTTTCGTTTCAAAGCCCACATAAGTTG
716 GTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTG
*
2459928 GTGGCACTTTTTAGTCCTCAAAAAGCAGCATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCA
781 GTGGCACTTTTTAGTCCTCAAAGAGCAGCATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCA
* *
2459993 GGTCGTACTTCATTCCCTTCTTTTCCCTTTTATCCTCAAAGAGCAAGGCGCACTTTATTTTCCTC
846 GGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAG-AAGGCGCACTTTATTTTCCTC
* *
2460058 TTTCTTTTGTCCTCGAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAA
910 TTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCATTGTCCTTAAA
* *
2460118 GAGCAGGATGCTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATT
1 GAGCAGGACGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCATT
*
2460183 TTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGTAG
66 TTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
* *
2460248 GACACTTTCCTTTTCTTTTTTCCCTTGTCCTCACGGAGCGAGACCTATTTCATTTTCTTTTCCTT
131 GACACTTTCCTTTTCTTTTTTCCTTTGTCCTCACGGAGCGAGACCTATTTCATTTTATTTTCCTT
* *
2460313 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTATGCATAAGTTGGCAG
196 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAG
* * *
2460378 CACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAAGACCTATC
261 CACCCAAAAAGCCCACACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATC
* *
2460443 TAAGGAGGTCAAGCTTTAGAAAATTTCAAAACCTAGTAGGGAGAACCATAAAATCAAAAAACAAA
326 TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAA-AAA
* *
2460508 TTTTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCAGGGACAAAAT
390 -ATTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAAT
* *
2460573 GGTGTCTTTTGTTTTTGCGCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTATAGACA
454 GGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACA
*
2460638 CCTCATTTTGTTCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGT
519 CCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGT
* * * *
2460703 ATGGGGATGAATTGGAGGCACCTTCTAGTCCTCAAAGTGCGGGACATCTTTTTCTTCCAAAGCCC
584 ATGGGGATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCC
*
2460768 ACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCGCGC
649 ACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGC
*
2460833 AAGGTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGT
714 AAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGT
* * *
2460898 TGGTGGCACTTTTTAGTCCTCAAAGTGCAGGATGCCCTTTCCTCTTCCCTCTTGTCCTCAAAGAG
779 TGGTGGCACTTTTTAGTCCTCAAAGAGCAGCATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAG
* * * *
2460963 CAGGTCATATTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACCTTATTTTCC
844 CAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAG-AAGGCGCACTTTATTTTCC
* * ** * *
2461028 TCTTTCTTTTATCCTCAAAGTGTTGGACGCATTTCATTTTCCTTTTCTCCATTGTTCTTAAA
908 TCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCATTGTCCTTAAA
* * * * * *
2461090 AAGCAAGACGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCCGGACATACTTCGTT
1 GAGCAGGACGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCATT
2461155 TT-CTTGTTTTTCTTTGTCCTCGAAAAGCA
66 TTCCTT-TTTTTCTTTGTCCTCGAAAAGCA
2461184 AGATGTACTC
Statistics
Matches: 1903, Mismatches: 124, Indels: 16
0.93 0.06 0.01
Matches are distributed among these distances:
970 968 0.51
971 11 0.01
972 623 0.33
973 290 0.15
974 11 0.01
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (969 bp):
GAGCAGGACGCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACACATTTCATT
TTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
GACACTTTCCTTTTCTTTTTTCCTTTGTCCTCACGGAGCGAGACCTATTTCATTTTATTTTCCTT
TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAG
CACCCAAAAAGCCCACACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATC
TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAA
TTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGG
TGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACC
TCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTAT
GGGGATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCAC
ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAA
GTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTG
GTGGCACTTTTTAGTCCTCAAAGAGCAGCATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCA
GGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGAAGGCGCACTTTATTTTCCTCT
TTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCATTGTCCTTAAA
Found at i:2460121 original size:43 final size:43
Alignment explanation
Indices: 2459962--2460216 Score: 197
Period size: 43 Copynumber: 5.8 Consensus size: 43
2459952 GCAGCATGCC
* * * *
2459962 TTTTCCTCTTC-CCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTTTTCTCCT-TTGTCCTCAAAGAGCAGGACGCATTTCA
*
2460005 TTCCCTT-CTTTTC-CCTTTTATCCTCAAAGAGCAAGG-CGCACTTT-A
1 TT---TTCCTTTTCTCC-TTTGTCCTCAAAGAGC-AGGACGCA-TTTCA
* *
2460050 TTTTCCTCTTTCT--TTTGTCCTCGAAGAGCAGGACGCATTTCG
1 TTTTCCT-TTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* *
2460092 TTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATGC-TCTTCA
1 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCAT-TTCA
* *
2460135 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCA
1 TTTTCC-TTTTCT-CCTT-T-GTCCTCAAAGAGCAGGACGCATTTCA
* *
2460181 TTTTCCTTTTTTTCTTTGTCCTCGAAA-AGCAGGACG
1 TTTTCCTTTTCTCCTTTGTCCTC-AAAGAGCAGGACG
2460217 TGTTCTTTTT
Statistics
Matches: 174, Mismatches: 17, Indels: 42
0.75 0.07 0.18
Matches are distributed among these distances:
41 11 0.06
42 33 0.19
43 46 0.26
44 12 0.07
45 31 0.18
46 35 0.20
47 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (43 bp):
TTTTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
Found at i:2460795 original size:61 final size:60
Alignment explanation
Indices: 2460714--2460929 Score: 252
Period size: 61 Copynumber: 3.5 Consensus size: 60
2460704 TGGGGATGAA
* * * * * *
2460714 TTGGAGGCACCTTCTAGTCCTCAAAGTGCGGGACATCTTTTTCTTCCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * *
2460775 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCGCGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
2460836 GTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2460897 TTGGTGGCACTTTTTAGTCCTCAAAGTGCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2460930 TGCCCTTTCC
Statistics
Matches: 129, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
60 6 0.05
61 123 0.95
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (60 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2461485 original size:61 final size:61
Alignment explanation
Indices: 2461385--2461716 Score: 355
Period size: 61 Copynumber: 5.4 Consensus size: 61
2461375 TGGGGATGAA
** * * *
2461385 TTGGTGGCACCTTCCAGTCTTCAAAGAG-TAGGACATCTTTTTCTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTA-GACGTCTTTTTCTTTCAAAGCCCACACAAG
* * * * * * **
2461446 TTGGTGGCACCTTTTAGTGCTCAAAGTGGTAGACGTCTTTTTCTTTTAACGCGCAGGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTAGACGTCTTTTTCTTTCAAAGCCCACACAAG
* * * * * * *
2461507 TTGGTGGTAGCTTTCAGTCCTAAAAGAGCTGGACG-CCTTTTCTTTTCAAAGCCCTCACAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTAGACGTCTTTTTC-TTTCAAAGCCCACACAAG
* *
2461568 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTAGACGTCTTTTTCTTTCAAAGCCCACACAAG
* ** * * *
2461629 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACG-CCATTTCTTTTCAAATCCCATACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTAGACGTCTTTTTC-TTTCAAAGCCCACACAAG
*
2461690 TTGGTGGCACTTTTTAGTCCTCAAAGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGA
2461717 ACAGGACGGC
Statistics
Matches: 224, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
60 11 0.05
61 205 0.92
62 8 0.04
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCTAGACGTCTTTTTCTTTCAAAGCCCACACAAG
Found at i:2461603 original size:122 final size:122
Alignment explanation
Indices: 2461385--2461730 Score: 399
Period size: 122 Copynumber: 2.8 Consensus size: 122
2461375 TGGGGATGAA
* * * * * ** *
2461385 TTGGTGGCACCTTCCAGTCTTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCACACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCTCACGAGTTG
* * * * * * * *
2461449 GTGGCACCTTTTAGTGCTCAAAGTGGTAGACGTCTTTTTCTTTTAACGCGCAGGCAAG
65 GTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
* * ** *
2461507 TTGGTGGTAGCTTTCAGTCCTAAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCTCACAAGTTGG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGG
2461572 TGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
66 TGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
* * * *
2461629 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCATTTCTTTTCAAATCCCAT-ACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCC-TCACGAGTTG
* * * *
2461693 GTGGCACTTTTTAGTCCTCAAAGAACAGGACGGCTTTT
65 GTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT
2461731 CCACTTCCCC
Statistics
Matches: 190, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
122 188 0.99
123 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.32
Consensus pattern (122 bp):
TTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
Found at i:2461694 original size:183 final size:183
Alignment explanation
Indices: 2461385--2461731 Score: 430
Period size: 183 Copynumber: 1.9 Consensus size: 183
2461375 TGGGGATGAA
* *
2461385 TTGGTGGCACCTTCCAGTCTTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACAAGTTGG
* * ** ** * * * *
2461450 TGGCACCTTTTAGTGCTCAAAGTGGTAGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTGGTGGT
66 TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCCATTTCTTTTAAAGCCCAGACAAGTTGGTGGC
* *
2461515 AGC-TTTCAGTCCTAAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCTCACAAG
131 A-CTTTTCAGTCCTAAAAGAACAGGACGCCTTTTCTTTTCAAAGCCCTCACAAG
** * *
2461568 TTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAG-TAGGACATCTTTTTCTTTCAAAGCCCACACAAGTTG
* * *
2461632 GTGGCACCTTTTAGTCCTCAAAGAGCAAGACG-CCATTTCTTTTCAAATCCCATACGAGTTGGTG
65 GTGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCCATTTCTTTT-AAAGCCCAGACAAGTTGGTG
* * *
2461696 GCACTTTTTAGTCCTCAAAGAACAGGACGGCTTTTC
129 GCACTTTTCAGTCCTAAAAGAACAGGACGCCTTTTC
2461732 CACTTCCCCC
Statistics
Matches: 137, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
182 10 0.07
183 126 0.92
184 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (183 bp):
TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACAAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCCATTTCTTTTAAAGCCCAGACAAGTTGGTGGC
ACTTTTCAGTCCTAAAAGAACAGGACGCCTTTTCTTTTCAAAGCCCTCACAAG
Found at i:2461931 original size:46 final size:46
Alignment explanation
Indices: 2461744--2462004 Score: 201
Period size: 46 Copynumber: 5.8 Consensus size: 46
2461734 CTTCCCCCTT
* * *
2461744 GTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTT-T-
1 GTCCTCAAAGAGTAGGACACTCTTCATTTCCTTCTTTTCCCTTCTA
* * * *
2461788 TTCCCTCAAAGAGCAGGGTGCACT-TT-ATTTTCC-TC-TTT--CTT-TT
1 GT-CCTCAAAGAGTA-GG-ACACTCTTCA-TTTCCTTCTTTTCCCTTCTA
* * * *
2461831 GTCCTCAAAGAGCAGGACGCAT-TTCGTTT--TCCTTTTCTCCTT-T-
1 GTCCTCAAAGAGTAGGACAC-TCTTCATTTCCTTCTTTTC-CCTTCTA
*
2461874 GTCCTCAAAGAGTAAGACACTCTTCATTTCCTTCTTTTCCCTTCTA
1 GTCCTCAAAGAGTAGGACACTCTTCATTTCCTTCTTTTCCCTTCTA
* * *
2461920 GTCCGCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
1 GTCCTCAAAGAGTAGGACACTCTTCATTTCCTTCTTTTCCCTTCTA
*
2461966 GTCCTCAAAGAGTAGGACACAT-TTCATTTTCCTTTTTTT
1 GTCCTCAAAGAGTAGGACAC-TCTTCA-TTTCCTTCTTTT
2462005 TGTCCTCGAA
Statistics
Matches: 175, Mismatches: 23, Indels: 35
0.75 0.10 0.15
Matches are distributed among these distances:
40 3 0.02
41 11 0.06
42 17 0.10
43 24 0.14
44 12 0.07
45 22 0.13
46 72 0.41
47 14 0.08
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.40
Consensus pattern (46 bp):
GTCCTCAAAGAGTAGGACACTCTTCATTTCCTTCTTTTCCCTTCTA
Found at i:2461950 original size:130 final size:134
Alignment explanation
Indices: 2461742--2462001 Score: 325
Period size: 130 Copynumber: 2.0 Consensus size: 134
2461732 CACTTCCCCC
* * * * **
2461742 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTTTCCCTCAAAGAGCAGGGT
1 TTGTCCTCAAAGAGTAAGACACACTTCATTTCCTTCTTTTCACTTTGTCCCGCAAAGAGCAGGAC
* * * *
2461807 GCACTTTATTTTCC-TC-TTT-CTT-TTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTC
66 GCACTTCATTTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTC
2461868 TCCT
131 TCCT
* *
2461872 TTGTCCTCAAAGAGTAAGACACTCTTCATTTCCTTCTTTTCCCTTCTAGT-CCGCAAAGAGCAGG
1 TTGTCCTCAAAGAGTAAGACACACTTCATTTCCTTCTTTTCACTT-T-GTCCCGCAAAGAGCAGG
* *
2461936 ACGCTCTTCA-TTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGTAGGACACATTTCATTTTCCTT
64 ACGCACTTCATTTTCCTTCTTTT-CCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTT
2462000 TT
128 TT
2462002 TTTTGTCCTC
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
130 46 0.42
131 22 0.20
132 4 0.04
134 3 0.03
135 34 0.31
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.40
Consensus pattern (134 bp):
TTGTCCTCAAAGAGTAAGACACACTTCATTTCCTTCTTTTCACTTTGTCCCGCAAAGAGCAGGAC
GCACTTCATTTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTC
TCCT
Found at i:2462727 original size:60 final size:60
Alignment explanation
Indices: 2462564--2462750 Score: 205
Period size: 61 Copynumber: 3.1 Consensus size: 60
2462554 AGCGAGACAT
* * * * *
2462564 CTTTTTCTTTCAAAGCCCACATGAATTGGTAGCACCTTTTAGTCCTCAAAAAGCAAGACGT
1 CTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTC-AAAAGCAGGACGC
* * * * * *
2462625 CTTTTTCTTTTAAAGGCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAAGCAGGACGC
1 CTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAGCAGGACGC
* * * *
2462685 CTTTTAT-TTTCGAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAATAGCAGCATGC
1 CTTTT-TCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAA-AGCAGGACGC
2462746 CTTTT
1 CTTTT
2462751 CCTCTTCCCC
Statistics
Matches: 103, Mismatches: 21, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
60 51 0.50
61 52 0.50
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (60 bp):
CTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAGCAGGACGC
Found at i:2462863 original size:42 final size:42
Alignment explanation
Indices: 2462762--2462888 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
2462752 CTCTTCCCCC
* *
2462762 TTGTCCTCAAAGAGAAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
2462807 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* *
2462849 TTGTCCTCAAAGAGCAGGAAGCA-TTTCGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
2462889 CCACTGTCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
41 8 0.11
42 32 0.42
44 3 0.04
45 28 0.37
46 5 0.07
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2463564 original size:61 final size:61
Alignment explanation
Indices: 2463464--2463677 Score: 286
Period size: 61 Copynumber: 3.5 Consensus size: 61
2463454 TGGGGACGAA
** ** * **
2463464 TTGGTGGCACCTTCCAGTCCTCAAAGAGTGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACAAG
* * *
2463525 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTCTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACAAG
* * *
2463586 TTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACAAG
*
2463647 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAG
2463678 CATGCCTTTT
Statistics
Matches: 133, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
60 5 0.04
61 128 0.96
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACAAG
Found at i:2463887 original size:46 final size:43
Alignment explanation
Indices: 2463699--2463937 Score: 184
Period size: 43 Copynumber: 5.5 Consensus size: 43
2463689 CTCTTCCCTC
* ** * *
2463699 TTGTCCTCAAAGAGCAGGTCGTACTTCA-TTCCCTTCTTTTCTCTT
1 TTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTT-TTTT-TC-T
* * *
2463744 TTATCCTCAAAGAGCAGGGCACACA-TT-ATTTTCCTCTTTCT-T
1 TTGTCCTCAAAGAGCA-GG-ACACATTTCATTTTCCTTTTTTTCT
* * * * *
2463786 TTGTCCTCGAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
* **
2463829 TTGTCCTTAAAGAGCAGGATGC-TCTTCA-TTTCCTTTTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACACAT-TTCATTTTCCTTTTTTT--CT
*
2463873 TCTAGTCCTCAAAGAGCATGACACATTTCATTTTCCTTTTTTTCT
1 T-T-GTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
*
2463918 TTGTCCTCAAAAAGCAGGAC
1 TTGTCCTCAAAGAGCAGGAC
2463938 GTGTTCTTTT
Statistics
Matches: 154, Mismatches: 27, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
40 4 0.03
41 4 0.03
42 35 0.23
43 39 0.25
44 5 0.03
45 23 0.15
46 29 0.19
47 15 0.10
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
Found at i:2463984 original size:35 final size:35
Alignment explanation
Indices: 2463916--2463984 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
2463906 TCCTTTTTTT
* *
2463916 CTTTGTCCTCAAAAAGCAGGACGTGTTCTTTTTCA
1 CTTTGTCCTCAAAAAGCAGGACCTGTTCCTTTTCA
* *
2463951 CTTTGTCCTCAAGAAGTAGGACACT-TTCCTTTTC
1 CTTTGTCCTCAAAAAGCAGGAC-CTGTTCCTTTTC
2463985 TTTTTTCCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 28 0.97
36 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (35 bp):
CTTTGTCCTCAAAAAGCAGGACCTGTTCCTTTTCA
Found at i:2464504 original size:61 final size:61
Alignment explanation
Indices: 2464428--2464547 Score: 168
Period size: 61 Copynumber: 2.0 Consensus size: 61
2464418 AGGTATGGGG
* * **
2464428 ATGAATTGGAGGCACCTTCTAGTCCTCAAAGTGCGGGACATCTTTTTCTTTCAAAGCCCAC
1 ATGAATTGGAGGCACCTTCTAGTCATCAAAGAGCAAGACATCTTTTTCTTTCAAAGCCCAC
* * * *
2464489 ATGAATTGGTGGCACCTTTTAGTCATCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCC
1 ATGAATTGGAGGCACCTTCTAGTCATCAAAGAGCAAGACATCTTTTTCTTTCAAAGCCC
2464548 GTGCAAGGTA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (61 bp):
ATGAATTGGAGGCACCTTCTAGTCATCAAAGAGCAAGACATCTTTTTCTTTCAAAGCCCAC
Found at i:2464898 original size:61 final size:60
Alignment explanation
Indices: 2464832--2465030 Score: 245
Period size: 61 Copynumber: 3.3 Consensus size: 60
2464822 CACCTTCCAA
* *
2464832 TCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
* * * * * * * *
2464893 TCCTCAAAGAGCAGGATGTCTTTTTCTTTTAAAGCCCGCGCAAGGTAGTGTCACCTTTTAG
1 TCCTCAAAGAGCAGGA-CTCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
* * *
2464954 TCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAG
1 TCCTCAAAGAGCAGGACTCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
*
2465015 TCCTCAAAGTGCAGGA
1 TCCTCAAAGAGCAGGA
2465031 TGCCCTGTCC
Statistics
Matches: 114, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
60 6 0.05
61 108 0.95
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (60 bp):
TCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
Found at i:2464974 original size:382 final size:379
Alignment explanation
Indices: 2464244--2464981 Score: 1253
Period size: 382 Copynumber: 1.9 Consensus size: 379
2464234 GAATGTCGTC
* *
2464244 CTTTTACATGCATTTAGCTAAGCATTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTG
1 CTTTTACAAGCATTTAGCTAAGCATTTTTTTTCCTTCACGGACAAAATGGCGTCTTTTGTTTTTG
* *
2464309 CCCTATTCCTGATACTCAGAATCAGCCAAAGAGGGGCAGCTATAGACACCTCATTTTGTTCGGGT
66 CCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTATAGACACCTCATTTTGTCCGGGT
* * * *
2464374 TAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGTTTGAAAGGTATGGGGATGAATTGGAG
131 TAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTACGGGGACGAAATGGAG
* * *
2464439 GCACCTTCTAGTCCTCAAAGTGCGGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCAC
196 GCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCAC
*
2464504 CTTTTAGTCATCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCGTGCAAGGTAGTGTCACCTTT
261 CTTTTAGTCATCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCGCGCAAGGTAGTGTCACCTTT
2464569 TAGTCCTCAAAGAGCAAGACGCCTTTTCTTTGTCCTCGAAAAGCAGGACGTACT
326 TAGTCCTCAAAGAGCAAGACGCCTTTTCTTTGTCCTCGAAAAGCAGGACGTACT
2464623 CTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGCGTCTTTTGTTT
1 CTTTTACAAGCATTTAGCTAAGCA---TTTTTTTTCCTTCACGGACAAAATGGCGTCTTTTGTTT
* *
2464688 TTGCCCTATTCCTGATACTCAGAAACAGCGAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCG
63 TTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTATAGACACCTCATTTTGTCCG
*
2464753 GGTTAATTTTTCGGTAACCCAAAGCTTTACTAGATGGAGGGGTTGAAAGGTACGGGGACGAAAT-
128 GGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTACGGGGACGAAATG
*
2464817 GATGGCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTG
193 GA-GGCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTG
* * *
2464882 GCACCTTTTAGTCCTCAAAGAGCAGGATGTCTTTTTCTTTTAAAGCCCGCGCAAGGTAGTGTCAC
257 GCACCTTTTAGTCATCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCGCGCAAGGTAGTGTCAC
*
2464947 CTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTT
322 CTTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTT
2464982 TCAAAGCCCA
Statistics
Matches: 335, Mismatches: 20, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
379 23 0.07
381 2 0.01
382 310 0.93
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (379 bp):
CTTTTACAAGCATTTAGCTAAGCATTTTTTTTCCTTCACGGACAAAATGGCGTCTTTTGTTTTTG
CCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTATAGACACCTCATTTTGTCCGGGT
TAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTACGGGGACGAAATGGAG
GCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAATTGGTGGCAC
CTTTTAGTCATCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCGCGCAAGGTAGTGTCACCTTT
TAGTCCTCAAAGAGCAAGACGCCTTTTCTTTGTCCTCGAAAAGCAGGACGTACT
Found at i:2465107 original size:45 final size:44
Alignment explanation
Indices: 2465038--2465181 Score: 127
Period size: 42 Copynumber: 3.3 Consensus size: 44
2465028 GGATGCCCTG
* * *
2465038 TCCTC-TTCCCTCTTGTCCTCAAAGAGCAGGTCATACTTCA-TT
1 TCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCACACTTCATTT
* * *
2465080 TCCTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTTATTT
1 TCC-TC-TTTCCCTTTTGTCCTCAAAGAGCAGGGCACACTTCATTT
* * * * *
2465126 TCCTCTTT--CTTTTGTCCTCAAAGTGCAGGACGCATTTCGTTT
1 TCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCACACTTCATTT
2465168 TCCT-TTTCTCCTTT
1 TCCTCTTTC-CCTTT
2465182 ATCCTTAAAG
Statistics
Matches: 83, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.04
42 35 0.42
43 2 0.02
44 7 0.08
45 31 0.37
46 5 0.06
ACGTcount: A:0.15, C:0.29, G:0.13, T:0.43
Consensus pattern (44 bp):
TCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCACACTTCATTT
Found at i:2465881 original size:61 final size:61
Alignment explanation
Indices: 2465782--2466002 Score: 216
Period size: 61 Copynumber: 3.6 Consensus size: 61
2465772 AGGTATGGGG
** *
2465782 ATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTATTTCTTTCAAAGCCCAC
1 ATGAATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTATTTCTTTCAAAGCCCAC
* * * * * *
2465843 ATGAATTGGTGGCCCCTTTTAGTCCTCAAAGTGCAGGACGTCTTTTTCTTTTAAAGCTCAC
1 ATGAATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTATTTCTTTCAAAGCCCAC
* * * * *
2465904 --GCAAGTTAGTGGCACCTTTTAGTCCTCAAAAAGCAAGATA-C-ATTTTCTTTTCAACGCCCAC
1 ATG-AA-TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTA-TTTC-TTTCAAAGCCCAC
* * **
2465965 ACGAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGA
1 ATGAATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2466003 TGCCTTTTCC
Statistics
Matches: 128, Mismatches: 26, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
59 1 0.01
60 7 0.05
61 118 0.92
62 1 0.01
63 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (61 bp):
ATGAATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTATTTCTTTCAAAGCCCAC
Found at i:2466078 original size:45 final size:42
Alignment explanation
Indices: 2466022--2466148 Score: 116
Period size: 42 Copynumber: 3.0 Consensus size: 42
2466012 CTTCTCCCGC
*
2466022 TTGTCCACAAAGAGC-GAGACACACTTCA-TTTCCTTCCTTTCCCTT
1 TTGTCCTCAAAGAGCAG-GACACACTTCATTTTCC-T-CTTT--CTT
* *
2466067 TTGTCCTCAAAGTGCAGGACACACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTCTTTCTT
* ** * *
2466109 TTGCCCTCAAAGAGTTGGACGCATTTCATTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTCTTTCT
2466149 CCATTGTTCT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
41 5 0.07
42 31 0.44
44 4 0.06
45 24 0.34
46 6 0.09
ACGTcount: A:0.20, C:0.28, G:0.13, T:0.39
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACACACTTCATTTTCCTCTTTCTT
Done.