Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 15 of 16
Found at i:2466676 original size:122 final size:121
Alignment explanation
Indices: 2466458--2466803 Score: 410
Period size: 122 Copynumber: 2.8 Consensus size: 121
2466448 TGGGGATGAA
* * * ** *
2466458 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCACACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAG-CGAACGCCTTTTCT-TTTCAAAGCCCTCACGAGTTG
* * * * ** * **
2466522 GTGGCACCTTTTAGTGCTCAAAGTGGTAGACGTCTTTTTCTCTT-ATCGCGCAGGCAAG
64 GTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCT-TTCAAAGCCCACACAAG
*
2466580 TTGGTGGCAGCTTTCAGTCCTCAAAGAGCCGAACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAG-CGAACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGG
*
2466645 TGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACATAAG
65 TGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACACAAG
* * *
2466702 CTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCAT-ACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCGA-ACGCCTTTTCTTTTCAAAGCCC-TCACGAGTTG
* * *
2466766 GTGGCACTTTTTAGTCCTCAAAGAGCAGGACGGCTTTT
64 GTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT
2466804 CCACTTCCCC
Statistics
Matches: 195, Mismatches: 25, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
121 4 0.02
122 189 0.97
123 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (121 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCGAACGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGT
GGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACACAAG
Found at i:2466767 original size:183 final size:183
Alignment explanation
Indices: 2466458--2466791 Score: 449
Period size: 183 Copynumber: 1.8 Consensus size: 183
2466448 TGGGGATGAA
* *
2466458 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACAAGCTGG
* * ** * ** * *
2466523 TGGCACCTTTTAGTGCTCAAAGTGGTAGACGTCTTTTTCTCTTATCGCGCAGGCAAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCCTTTTCTCTTAAAGCCCAGACAAGTTGGTGGC
2466588 AGC-TTTCAGTCCTCAAAGAGCCGAACGCCTTTTCTTTTCAAAGCCCTCACGAG
131 A-CTTTTCAGTCCTCAAAGAGCCGAACGCCTTTTCTTTTCAAAGCCCTCACGAG
** * *
2466641 TTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTCTTTCAAAGCCCACATAAGCTG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAG-TAGGACATCTTTTTCTTTCAAAGCCCACACAAGCTG
* * *
2466705 GTGGCACCTTTTAGTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCATACGAGTTGGTG
65 GTGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCCTTTTCTCTT-AAAGCCCAGACAAGTTGGTG
*
2466769 GCACTTTTTAGTCCTCAAAGAGC
129 GCACTTTTCAGTCCTCAAAGAGC
2466792 AGGACGGCTT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
182 10 0.08
183 118 0.91
184 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (183 bp):
TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAAGCCCACACAAGCTGG
TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCCTTTTCTCTTAAAGCCCAGACAAGTTGGTGGC
ACTTTTCAGTCCTCAAAGAGCCGAACGCCTTTTCTTTTCAAAGCCCTCACGAG
Found at i:2466791 original size:61 final size:61
Alignment explanation
Indices: 2466458--2466804 Score: 360
Period size: 61 Copynumber: 5.7 Consensus size: 61
2466448 TGGGGATGAA
** * **
2466458 TTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* * * * * ** * ** *
2466519 TTGGTGGCACCTTTTAGTGCTCAAAGTGGTA-GACGTCTTTTTCTCTT-ATCGCGCAGGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAG-AGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
2466580 TTGGTGGCAGCTTTCAGTCCTCAAAGAGCCGAACGCCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* * **
2466641 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT-TCTTTCAAAGCCCACATAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* * *
2466702 CTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCATACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* *
2466763 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGGCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2466805 CACTTCCCCT
Statistics
Matches: 230, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
60 11 0.05
61 208 0.90
62 10 0.04
63 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2466916 original size:42 final size:42
Alignment explanation
Indices: 2466814--2467097 Score: 174
Period size: 46 Copynumber: 6.5 Consensus size: 42
2466804 CCACTTCCCC
* *
2466814 TTTGTCCTCAAAGAGTAGGACGCACTTCA-TTTCCATCTTTTCACT
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CT
**
2466859 TTT-TCCCTCAAAGAGCAGGGTGCACTTTATTTTCCTCTTTCT
1 TTTGT-CCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCT
*
2466901 TTTGTCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCT-TTTCT
1 TTTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT
* *
2466942 CCTTTGTCCTCAAAGAGTC-GGACGCTCTTCA-TTTCCTTCTTTTCCCT
1 --TTTGTCCTCAAAGAG-CAGGACGCACTTTATTTTCC-TC-TTT--CT
* * * * *
2466989 TCTAGTCCGCAAAGAGTAGGACGCTCTTCA-TTTCCTTCTTTTCCCT
1 T-TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CT
* * * *
2467035 TCTAGTCCTCAAAGAGCAGGACACATTTTATTTTCC-GTTT-T
1 T-TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCT
2467076 TTTGTCCTCGAAA-AGCAGGACG
1 TTTGTCCTC-AAAGAGCAGGACG
2467098 TACTCTTTTT
Statistics
Matches: 200, Mismatches: 22, Indels: 39
0.77 0.08 0.15
Matches are distributed among these distances:
40 15 0.08
41 13 0.06
42 34 0.17
43 23 0.12
44 10 0.05
45 29 0.14
46 69 0.34
47 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (42 bp):
TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCT
Found at i:2467004 original size:46 final size:46
Alignment explanation
Indices: 2466817--2467056 Score: 216
Period size: 46 Copynumber: 5.4 Consensus size: 46
2466807 CTTCCCCTTT
* * *
2466817 GTCCTCAAAGAGTAGGACGCACTTCATTTCCATCTTTTCACTT-T-
1 GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
* * ** * * *
2466861 TTCCCTCAAAGAGCAGGGTGCACTTTATTTTCC-TC-TTT--CTT-TT
1 GT-CCTCAAAGAGTAGGACGCTCTTCA-TTTCCTTCTTTTCCCTTCTA
* * *
2466904 GTCCTCAAAGAGCAGGACGCAT-TTCGTTT--TCCTTTTCTCCTT-T-
1 GTCCTCAAAGAGTAGGACGC-TCTTCATTTCCTTCTTTTC-CCTTCTA
*
2466947 GTCCTCAAAGAGTCGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
1 GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
*
2466993 GTCCGCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
1 GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
*
2467039 GTCCTCAAAGAGCAGGAC
1 GTCCTCAAAGAGTAGGAC
2467057 ACATTTTATT
Statistics
Matches: 162, Mismatches: 20, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
40 1 0.01
41 6 0.04
42 23 0.14
43 25 0.15
44 12 0.07
45 30 0.19
46 65 0.40
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.37
Consensus pattern (46 bp):
GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTA
Found at i:2467023 original size:130 final size:134
Alignment explanation
Indices: 2466812--2467062 Score: 316
Period size: 130 Copynumber: 1.9 Consensus size: 134
2466802 TTCCACTTCC
* *
2466812 CCTTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCATCTTTTCACTTTTTCCCTCAAAGAGCAG
1 CCTTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCATCTTTTCACTTTGTCCCGCAAAGAGCAG
** * * *
2466877 GGTGCACTTTATTTTCC-TC-TTT-CTT-TTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT
66 GACGCACTTCATTTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTT
2466938 TTCT
131 TTCT
* * * * *
2466942 CCTTTGTCCTCAAAGAGTCGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGT-CCGCAAAGAGT
1 CCTTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCATCTTTTCACTT-T-GTCCCGCAAAGAGC
*
2467006 AGGACGCTCTTCA-TTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTT
64 AGGACGCACTTCATTTTCCTTCTTTT-CCTTCTAGTCCTCAAAGAGCAGGACACATTT
2467063 TATTTTCCGT
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
130 49 0.49
131 21 0.21
132 4 0.04
134 3 0.03
135 24 0.24
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.38
Consensus pattern (134 bp):
CCTTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCATCTTTTCACTTTGTCCCGCAAAGAGCAG
GACGCACTTCATTTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTT
TTCT
Found at i:2467678 original size:61 final size:60
Alignment explanation
Indices: 2467612--2467808 Score: 252
Period size: 61 Copynumber: 3.2 Consensus size: 60
2467602 CACCTTCCAA
* * *
2467612 TCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCACATAAATTGGTGGCACCTTTTAG
1 TCCTCAAAGAGC-AGACGTCTTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * * *
2467673 TCCTCAAAAAGCAAGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAG
1 TCCTCAAAGAGC-AGACGTCTTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
2467734 TCCTCAAAGAGCAGGACGCCTTTTAT-TTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAG
1 TCCTCAAAGAGCA-GACGTCTTTT-TCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
2467795 TCCTCAAAGAGCAG
1 TCCTCAAAGAGCAG
2467809 CATGCCTTAT
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
60 2 0.02
61 114 0.97
62 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (60 bp):
TCCTCAAAGAGCAGACGTCTTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:2467887 original size:45 final size:42
Alignment explanation
Indices: 2467830--2467935 Score: 142
Period size: 45 Copynumber: 2.5 Consensus size: 42
2467820 CTCTTCCCCC
*
2467830 TTGTCCTCAAAGAGAAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TC-TTT--CTT
* *
2467875 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCTT
2467917 TTGTCCTCAAAGAGCAGGA
1 TTGTCCTCAAAGAGCAGGA
2467936 AGCATTTTGT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
42 22 0.39
44 3 0.05
45 27 0.47
46 5 0.09
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCTT
Found at i:2467931 original size:42 final size:42
Alignment explanation
Indices: 2467830--2467956 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 42
2467820 CTCTTCCCCC
* * *
2467830 TTGTCCTCAAAGAGAAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGAAGCACTTTATTTTCC-TC-TTT--CTT
*
2467875 TTGTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGAAGCACTTTATTTTCCTCTTTCTT
* *
2467917 TTGTCCTCAAAGAGCAGGAAGCATTTTGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGAAGCACTTTATTTTCCTCTTTCT
2467957 CCACTGTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 5 0.07
42 35 0.47
44 3 0.04
45 27 0.36
46 5 0.07
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGAAGCACTTTATTTTCCTCTTTCTT
Found at i:2468166 original size:48 final size:48
Alignment explanation
Indices: 2468075--2468172 Score: 121
Period size: 48 Copynumber: 2.0 Consensus size: 48
2468065 AGACGTACTC
* *
2468075 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCTTTTTCTTTTTCT
1 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTCCT
*
2468123 TTTTTC-CTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTTTCTTTTCCT
1 TTTTTCACTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTTTCTTTTCCT
2468171 TT
1 TT
2468173 GTCCTAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
46 2 0.05
47 19 0.43
48 23 0.52
ACGTcount: A:0.15, C:0.23, G:0.11, T:0.50
Consensus pattern (48 bp):
TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTCCT
Found at i:2468168 original size:47 final size:47
Alignment explanation
Indices: 2468074--2468177 Score: 115
Period size: 47 Copynumber: 2.2 Consensus size: 47
2468064 AAGACGTACT
*
2468074 CTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCTTTTTCTTTTTC
1 CTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTTC
* *
2468122 TTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTTTC-TTTTC
1 CTTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTTTCTTTTTC
*
2468169 CTTTGTCCT
1 CTTTTTCCT
2468178 AAAAAAGAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
46 2 0.04
47 31 0.65
48 15 0.31
ACGTcount: A:0.14, C:0.25, G:0.12, T:0.49
Consensus pattern (47 bp):
CTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTTC
Found at i:2468386 original size:61 final size:61
Alignment explanation
Indices: 2468293--2468474 Score: 222
Period size: 61 Copynumber: 3.0 Consensus size: 61
2468283 ACAGTAGCCG
* * * ** * * **
2468293 GACGCCTTTTCTTTTTAAAGCCCTCATGAGTTGGTGGCACCTTTTAGCCCTCGAAGAGCTG
1 GACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAA
*
2468354 GACGTCTTTTTC-TTTCAAAGCCCACGCAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAA
1 GACG-CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAA
* * * *
2468415 GACGCTTTTTCTTTTCAAAGCCCATACGAGTTGGTGGCACTTTTTAGTCCTCAAAAAGCA
1 GACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCA
2468475 GGATGGCTTT
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 7 0.07
61 91 0.88
62 6 0.06
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (61 bp):
GACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAA
Found at i:2468551 original size:45 final size:43
Alignment explanation
Indices: 2468497--2468735 Score: 252
Period size: 42 Copynumber: 5.5 Consensus size: 43
2468487 CTCTTCCCCC
*
2468497 TTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACT
1 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTC-CT
* * * *
2468541 TTTTCCCTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTT-TT
1 TTGT-CCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
* * * *
2468584 TTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT-TTCTCCT
1 TTGTCCTCAAAGAGTAGGACGCACTTC-ATTTCCTTCTTTTCCT
*
2468627 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTT-CCT
* * * *
2468671 TCTAGTCCGCAAAGAGCAGGACGCTCTTCATTTCCTT-TTTTTCT
1 T-T-GTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
*
2468715 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGTAGGACG
2468736 TACTCTTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
42 43 0.26
43 43 0.26
44 10 0.06
45 40 0.24
46 31 0.19
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (43 bp):
TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
Found at i:2468686 original size:46 final size:44
Alignment explanation
Indices: 2468497--2468735 Score: 233
Period size: 45 Copynumber: 5.5 Consensus size: 44
2468487 CTCTTCCCCC
* * *
2468497 TTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACT
1 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
* * * * *
2468541 TTTTCCCTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTT--TT
1 TTGT-CCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
* * *
2468584 TTGTCCTCAAAGAGCAGGACGCAT-TTCGTTT--TCCTTTTCTCCT
1 TTGTCCTCAAAGAGTAGGACGC-TCTTCATTTCCTTCTTTTC-CCT
2468627 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
* * *
2468671 TCTAGTCCGCAAAGAGCAGGACGCTCTTCATTTCCTT-TTTT-TCT
1 T-T-GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
*
2468715 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGTAGGACG
2468736 TACTCTTTTT
Statistics
Matches: 166, Mismatches: 18, Indels: 24
0.80 0.09 0.12
Matches are distributed among these distances:
40 6 0.04
42 36 0.22
43 36 0.22
44 10 0.06
45 47 0.28
46 31 0.19
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
Found at i:2468712 original size:130 final size:130
Alignment explanation
Indices: 2468482--2468735 Score: 345
Period size: 130 Copynumber: 1.9 Consensus size: 130
2468472 GCAGGATGGC
* *
2468482 TTTTCCTCTTCCCCCTTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTTTCC
1 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTGTCC
* *
2468547 CTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTTT-TTTGTCCTC-AAAGAGCAGGACGCATTT
66 C-TAAAGAGCAGGACGCACTTCATTTCCTTCTTTTTCTTTGTCCTCGAAA-AGCAGGACGCATTT
2468610 CG
129 CG
* * * * *
2468612 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGT
1 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTT-T-GT
*
2468677 CCGC-AAAGAGCAGGACGCTCTTCATTTCCTT-TTTTTCTTTGTCCTCGAAAAGCAGGACG
64 CC-CTAAAGAGCAGGACGCACTTCATTTCCTTCTTTTTCTTTGTCCTCGAAAAGCAGGACG
2468736 TACTCTTTTT
Statistics
Matches: 109, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
130 59 0.54
131 43 0.39
132 6 0.06
133 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.40
Consensus pattern (130 bp):
TTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTGTCC
CTAAAGAGCAGGACGCACTTCATTTCCTTCTTTTTCTTTGTCCTCGAAAAGCAGGACGCATTTCG
Found at i:2469369 original size:61 final size:60
Alignment explanation
Indices: 2469238--2469386 Score: 174
Period size: 61 Copynumber: 2.5 Consensus size: 60
2469228 GGACGAATTG
** * ** *
2469238 GTGGCACCTTCCAGTCCTCAAAGAGCGGGACATTTTTTCTTTCAAAGCCCACATGAGTTG
1 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACATTTTTTCTTTCAAAGCCCACACAAGTTA
* * *
2469298 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTCTATAGCCCACGCAAGTTA
1 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACAT-TTTTTCTTTC-AAAGCCCACACAAGTTA
* *
2469359 GTGTCTCCTTTTAGTCCTCAAAGAGCAG
1 GTGGCACCTTTTAGTCCTCAAAGAGCAG
2469387 CATGCCTTAT
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
60 32 0.42
61 44 0.58
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (60 bp):
GTGGCACCTTTTAGTCCTCAAAGAGCAGGACATTTTTTCTTTCAAAGCCCACACAAGTTA
Found at i:2469465 original size:45 final size:42
Alignment explanation
Indices: 2469408--2469513 Score: 151
Period size: 45 Copynumber: 2.5 Consensus size: 42
2469398 CTCTTCCCCC
*
2469408 TTGTCCTCAAAGAGAAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCC-TC-TTT--CTT
*
2469453 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCTT
2469495 TTGTCCTCAAAGAGCAGGA
1 TTGTCCTCAAAGAGCAGGA
2469514 AGCATTTTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
42 22 0.38
44 3 0.05
45 28 0.48
46 5 0.09
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTCTTTCTT
Found at i:2469509 original size:42 final size:42
Alignment explanation
Indices: 2469408--2469534 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
2469398 CTCTTCCCCC
* *
2469408 TTGTCCTCAAAGAGAAGGACGCACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CTT
2469453 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
* * *
2469495 TTGTCCTCAAAGAGCAGGAAGCATTTTGTTTTCCT-TTTCT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCT
2469535 CCACTGTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
41 5 0.07
42 35 0.46
44 3 0.04
45 28 0.37
46 5 0.07
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTT
Found at i:2469744 original size:48 final size:48
Alignment explanation
Indices: 2469653--2469750 Score: 121
Period size: 48 Copynumber: 2.0 Consensus size: 48
2469643 AGACGTACTA
* *
2469653 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCTTTTTCTTTTTCT
1 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTCCT
*
2469701 TTTTTC-CTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTTTCTTTTCCT
1 TTTTTCACTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTTTCTTTTCCT
2469749 TT
1 TT
2469751 GTCCTAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
46 2 0.05
47 19 0.43
48 23 0.52
ACGTcount: A:0.15, C:0.23, G:0.11, T:0.50
Consensus pattern (48 bp):
TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTCCT
Found at i:2469746 original size:47 final size:47
Alignment explanation
Indices: 2469653--2469755 Score: 113
Period size: 47 Copynumber: 2.2 Consensus size: 47
2469643 AGACGTACTA
* *
2469653 TTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCTTTTTCTTTTTCT
1 TTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTTCC
*
2469701 TTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTTTC-TTTTCC
1 TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTTTCTTTTTCC
*
2469748 TTTGTCCT
1 TTTTTCCT
2469756 AAAAAAGAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
46 2 0.04
47 31 0.65
48 15 0.31
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.50
Consensus pattern (47 bp):
TTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATTTTCTTTTTCC
Found at i:2470231 original size:61 final size:61
Alignment explanation
Indices: 2470153--2470362 Score: 255
Period size: 61 Copynumber: 3.4 Consensus size: 61
2470143 GGACGAATTG
* *
2470153 GTGGCACCTTCCT-GTCCTCAAAGAGC-GAGACATCTTTTTCTTTCAAAGCCCACATGAGTTA
1 GTGGCACCTT-TTAGTCCTCAAAGAGCAG-GACATCTTTTTCTTTCAAAGCCCACACGAGTTA
* * *
2470214 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTAAAGCCCACGCAAGTTA
1 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTA
** * * * *
2470275 GTGTTACCTTTTAGCCCTCAAAGAGCAGGAC-GCCTTTTCTTTTCAAAGCCCACACGAGTTG
1 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCACACGAGTTA
* *
2470336 GTGGCACTTTTTAGTCGTCAAAGAGCA
1 GTGGCACCTTTTAGTCCTCAAAGAGCA
2470363 AGATGCCTTT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
60 7 0.06
61 119 0.94
62 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
GTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTA
Found at i:2470531 original size:43 final size:43
Alignment explanation
Indices: 2470370--2470620 Score: 167
Period size: 42 Copynumber: 5.7 Consensus size: 43
2470360 GCAAGATGCC
* * * * *
2470370 TTTTCCTCTTC-CCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTTTTCTCCT-TTATCCTCAAAGAGCAGGACGCATTTCA
* *
2470413 -TTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTT-A
1 TTTTCCTT-TTCT-CC-TTTATCCTCAAAGAGCAGGACGCA-TTTCA
* *
2470458 TTTTCCTCTTTCT--TTTGTCCTCAAAGAGCAGGACGCATTTCG
1 TTTTCCT-TTTCTCCTTTATCCTCAAAGAGCAGGACGCATTTCA
* * *
2470500 TTTTCCTTTTCTCCTTTATGCTTAAAGAGCAGGATGC-TCTTC-
1 TTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGACGCAT-TTCA
* * * *
2470542 GTTTCCTTTTTCTCCCTTCCAGTCCTCAAAAAGCAGGACCCATTTCA
1 TTTTCC-TTTTCT-CCTT-TA-TCCTCAAAGAGCAGGACGCATTTCA
* * *
2470589 TTTTCCTTTTTTTCTTTGTCCTCGAAA-AGCAG
1 TTTTCCTTTTCTCCTTTATCCTC-AAAGAGCAG
2470621 AACGTGTTCT
Statistics
Matches: 164, Mismatches: 26, Indels: 36
0.73 0.12 0.16
Matches are distributed among these distances:
41 8 0.05
42 41 0.25
43 40 0.24
44 7 0.04
45 27 0.16
46 34 0.21
47 7 0.04
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.41
Consensus pattern (43 bp):
TTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGACGCATTTCA
Found at i:2470672 original size:41 final size:41
Alignment explanation
Indices: 2470627--2470729 Score: 106
Period size: 41 Copynumber: 2.5 Consensus size: 41
2470617 GCAGAACGTG
*
2470627 TTCTTTTTCACTTTGTCCTCAAGAAGC-AGGA-CACTTTCCTT
1 TTCTTTTTCACTTTGTCCTCAAGAAGCGA-GACCA-TTTCATT
* * * *
2470668 TTCTTTTTTACCTTGTCCTCACGGAGCGAGACCTATTTCATT
1 TTCTTTTTCACTTTGTCCTCAAGAAGCGAGACC-ATTTCATT
2470710 TTC-TTTTC-CTTTGTCCTCAA
1 TTCTTTTTCACTTTGTCCTCAA
2470730 AAAGTGGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
40 10 0.20
41 29 0.57
42 11 0.22
43 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.45
Consensus pattern (41 bp):
TTCTTTTTCACTTTGTCCTCAAGAAGCGAGACCATTTCATT
Found at i:2471164 original size:971 final size:971
Alignment explanation
Indices: 2469235--2484419 Score: 6784
Period size: 977 Copynumber: 15.2 Consensus size: 971
2469225 TAGGGACGAA
** * * * ***
2469235 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACAT-TTTTTCTTTCAAAGCCCACATGAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * * * * *
2469299 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT-TCTTCTATAGCCCACGCAAGTTAGTGT
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC-AAAGCCCACACGAGTTGGTGG
* * * * * *
2469363 CTCCTTTTAGTCCTCAAAGAGCAGCATGCCTTATCCTCTTCCCCCTTGTCCTCAAAGAGAAGGAC
130 CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTC
* * *
2469428 GCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTC
195 GTACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTC
* * ** *
2469493 TTTTGTCCTCAAAGAGCAGGAAGCATTTTGTTTTCCTTTTCTCCACTGTCCTTAACGAGCAGGAT
260 TTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGAT
* *
2469558 GCTCTTCATTTCCTTTTTTTCCCTTCTAGACCTCAAAGAGCAGGACTA-ATTTCGTTTTCCTTTT
325 GCTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGAC-ACATTTCATTTTCCTTTT
* * ** *
2469622 TTTCTTTTTCCTCGAAAAGCAAGACGTACTATTTTTCACTTTGTCCTCAAGAAGCAGGACACTTT
389 TTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTT
2469687 CTTTTTCTTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTG
454 C-----C-TTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTG
* * * * *
2469752 TCCTAAAAAAGAGGGACACCCCTTCCAATTATTTCCCTTCCTAAAGTTTGCATAAGTTGGCAACA
513 TCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACA
* *
2469817 CCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCAACAGTAGCCAACACCTATCTA
578 CCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTA
* * *
2469882 AGGAGATCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAATCATAAAATCAAAAAAAAAA-T
643 AGGAGGTCAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATT
* * *
2469946 TTGAATGTCGTTCTTTTACATGTATTTAGC-AATGCATTCTTTTTTTTCCTTCACGGACAAAATG
708 TTGAATGTCGTCCTTTTACATGCATTTAGCTAA-GCATTCTTTTTTTTCCTTCACTGACAAAATG
* * * *
2470010 GTGTCTTTTGTTTTTGCCCTATTCTTGATACTCAGAAATAGCCAAAGAGGGGCAGCTGTAGACGC
772 GTGTCTTTTGTCTTTG-CCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACAC
*
2470075 CTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTA
836 CTCATTTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTA
* *
2470140 TGGGGACGAATTGGTGGCACCTTCCTGTCCTCAAAGAGCGAGACATCTTTTTCTTTCAAAGCCCA
901 TGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCA
2470205 CATGAG
966 CATGAG
* * *
2470211 TTAGTGGCACCTTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTAAAGCCCACGCAAGTTAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
** *
2470276 TGTTACCTTTTAGCCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * *
2470341 ACTTTTTAGTCGTCAAAGAGCAAGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
2470406 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
196 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* *
2470471 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTATGCTTAAAGAGCAGGATG
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
* * * * *
2470536 CTCTTCGTTTCCTTTTTCTCCCTTCCAGTCCTCAAAAAGCAGGACCCATTTCATTTTCCTTTTTT
326 CTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTT
*
2470601 TCTTTGTCCTCGAAAAGCAGAACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCC
391 TCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCC
*
2470666 TTTTCTTTTTTACC-TTGTCCTCACGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
456 TTTTCTTTTTT-CCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
* * * *
2470730 AAAGTGGGACACCCCTTCCATTTATTTCCCTTTCTAAAGTCTACATAAGTTAGTAGCACCC-AAA
520 AAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAAA
* * *
2470794 TGCCCACACAAGTTGGTGGCAAACCGTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGACGT
585 AGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGT
* * *
2470859 CAAGCTATAGAAAATTTCAAAGCCTAGTAGGGAAAACCATAAAATCAAAAAACAAATTTTGAATG
650 CAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAATG
2470924 TCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTT
715 TCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTT
*
2470989 TGTCTTTGCCTTATTCCTGATACTCAGAAACAGCCAAGGAGGGGCAGCTGTAGACACCTCATTTT
780 TGTCTTTGCC-TATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTT
* *
2471054 GTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGGGGGGTTGAAAGGTATGTGGACG
844 GTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACG
**
2471119 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCTTTTTCTTTCAAAGCCCACATGAG
909 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
* * * * *
2471182 TTGGTGGCACTTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * * * * *
2471247 TGGCAGCTTTCAGTCCTAAAAGAGCCGGACGCCTTTTCTTTTTAAAGCCCTCATGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * * * * *
2471312 ACCTTTTAGCCCTCGAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTGGTGGCACCT
131 ACCTTTTAGTCCTCAAAGAGCAGGATG-C-----CTTT------TC-CTC----T--T--C-CCT
* * * ** * * * *
2471377 TTTAGTCCTCAAAGAGCAAGACGCTTTTTTCTTTTCAAAGCCCATACGAGTTGGTGGCACTTTTT
174 CTT-GTCCTCAAAGAGCAGGTCG--TACTTCATTT------CC-TTC---TT--T-TC-CCTTTT
* *** * ** * *
2471442 AGTCCTCAAAAAGCA--G-G-A-TGGCTTTTCCTCTTCCCCCTTGTCCTTAAAGAGTAGGACGCA
222 A-TCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTT-TCTTTTGTCCTCAAAGAGCAGGACGCA
* * * * * * * *
2471502 CTTC-ATTTCCTTCTTTTCACTTTTTCCCTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTTT-
285 TTTCGTTTTCCTT-TTCTC-CTTTGT-CCTTAAAGAGCAGGATGCTCTTCATTTCCTT-TTTTTC
* * * * * *
2471565 --TT-T-GTCCTCAAAAAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTC-AAAGAGTA
346 CCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAA-AGCA
* * * * * *
2471625 GGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCGCAA-AGAGCAGGACGCTCTTCATTTCCT
410 GGACG----T--GTT-C-T-TTTTCACTT-T-GTCCTCAAGA-AGCAGGACACT-TTCCTTTTCT
* * * * *
2471689 TTTTTTCTTTGTCCTCGAA-AAGC-AGGACGTA---C--TCT-TTTTCACTTTGTCCACAAGAAA
462 TTTTTCCTTTGTCCTC-AAGGAGCGA-GACCTATTTCATTTTCTTTTC-CTTTGTCCTCAA-AAA
** * * * * ***
2471746 -CAGGACACTTTCCTTTTC-TTT-TTTCCTTTGTCCTCAAGGAGCGAGGCCTATTTCATTTTCTT
523 GTGGGACAC---CCCTTCCATTTATTTCC-CT-TCCT--A--A---A-GTCTA---CA--TAAGT
** **** ** ** *** ** ** ** ** *
2471808 TTCCTTTGTCCTCTAAAATTCGGACACCCCTTCCAT-TTATTTCCCCTCCTAAAGTTTGCATA-A
570 TGGC-AACACC-C-AAAAAGCCCACACAAGTT-GGTGGCA-AACCTTTCC-AAA----GCCTACA
*** * ** * ** ** * * * * * ***
2471871 GTTGGCAGCACCTA-AAAAGCCCA-AACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACC
625 GTAACCAACACCTATCTAAG--GAGGTCAAGCT-ATAG-AAA-ATCT-CAAAACCT--AGTAGGG
* * ** * *** * * **** * ** **
2471934 AACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTAAAAACGTAGT--AGGGAAAACCATAAAA
682 AAAACC-A--TAA--A-ATCAA---AAAAAAAAT-TTTGAATGTCGTCCTTTTACATGCAT-TTA
* * ** ***** *** * **** * * ** * *
2471997 TCAAAAAAAAAAATTTTTGAATGTCGTCTTTTTACA---TG-CATTTAG-CTAAG-C-ATTCTTT
736 GCTAAGCATTCTTTTTTTTCCT-TC-ACTGACAAAATGGTGTC-TTTTGTCTTTGCCTATTCCTG
* ** **** * * * * * * * ** *
2472055 TTTTTCCTTCACGGACAAA-ATGGTG--TCTTTTG-----T--TTTTG-CC---CT-A-TTCCTA
798 ATACTCAGAAACAGCCAAAGA-GGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTTG
* * * ** * * ** * * ** *** * * ** **
2472104 AT-ACTCAGAAACA-GCCAAAGAGGGGCAGCTGTAGACACCTCATTCTG-C--CTGGGT-TAATT
862 GTAACCCA-AAGCATTAC-TAGA-TGG-AGGGGTTGAAAGGT-ATGGGGACGAATTGGTGGCACC
* * *** ** ****** * ** * *
2472163 TTTCGGTAACC-C-AA-AGCATTACTAGATGGAGGGGTTGAAAG-GTATAGGGACG
922 TTCCAGT--CCTCAAAGAGCGGGAC-ATCT-TTTTCTTTCAAAGCCCACA-TGA-G
** * * * ***
2472215 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACAT-TTTTTCTTTCAAAGCCCACATGAGTT
1 --TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTT
* * ** * *
2472279 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT-TCTTCTAAAGCCCATGCAAGTTAGT
64 GGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC-AAAGCCCACACGAGTTGGT
* * * * *
2472343 GTCTCCTTTTAGTCCTCAAAGAGCAAGACGCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGC
128 GGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTT-------C-C-C-------T---
* * *
2472407 ACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTTTCCTCAAAGAGCAGGTCG
174 -C---TT-GTCCTCAAAGAGCAGG-T--C--GT--AC-T---TC-ATT--TC------C---T--
* * * *
2472472 TACTTCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGTAGGGTGCACTTTATTTTCCTTTTTCT
209 T-C-T--TTTCC--C--TT---TTATC-C-TCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* * * * * * * * *
2472537 TTTGCCCTCAAAAAGCAGGACACATTTCGTTTTCCTTTTCGCTTTTGTCC-T-TAAAG-AGCAGG
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
* * ** ** * *
2472599 ATGC-TC--TTCATTTCCTTTT-TTTTC-CCTTCT-AGTCCTCAAAGAGCAGGACACATTTCATT
326 CT-CTTCATTTCCTTT--TTTTCCCTTCTAGTCCTCA---A----AGAGCAGGACACATTTCATT
* *
2472658 TTCCTTTTTTTCTTTGTCCTAGAAAAGTAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
381 TTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAG
*
2472723 GACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTT
446 GACACTTTCCTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTT
* *
2472788 TGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAA
511 TGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAA
*
2472853 CACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATC
576 CACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATC
*
2472918 TAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAA
641 TAAGGAGGTCAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAA
* * * * *
2472983 ATTTGTATGTCGTCCTTTTGCATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAAT
706 TTTTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAAT
* * * *
2473048 GGTGTCTTTTGTTTTTACGCTATTCCTGATACTCAGAAACAGCGAAAGAGGAGCAGCTGTAGACA
771 GGTGTCTTTTGTCTTTGC-CTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACA
* *
2473113 CCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGCAAGGT
835 CCTCATTTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGT
* * *
2473178 ATGGGGACGAATTGGTGGCACTTTCCTGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCC
900 ATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCC
2473243 ACATGAG
965 ACATGAG
*
2473250 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
*
2473315 TGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
*
2473379 ACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
* *
2473444 TACTTCATTTCCTTCTTTTCCCTTTTATCCACAAAGAGCAGGGAGCACTTTATTTTCCTCTTTCT
196 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* * *
2473509 TTTGTCCTCAAAGAGCATGACGCATTTCATTTTCCTTTTCTCCTTTGTGCTTAAAGAGCAGGATG
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
* *
2473574 CTCTTCGTTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACCCATTTCATTTTCCTTTTTT
326 CTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTT
* *
2473639 TCTTTGTCCTCGAAAAGCAGAACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAAGACACTTTCC
391 TCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCC
* * *
2473704 TTTTCTTTTTTCCCTTATCCTCACGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAA
456 TTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAA
* * * * * *
2473769 AAGTGGGATACCCCTTCCATTTATTTCCCTTTCTAAAGTCTACATAAGTTAGTAGCACCC-AAAT
521 AAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAAAA
* *
2473833 GCCCACACAAGTTGGTGGCAAACCGTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGACGTC
586 GCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTC
* *
2473898 AAGCTATAGAAAATTTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAATAAATTTTGAATGT
651 AAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAATGT
* *
2473963 CGTCTTTTTACATGCATTTAGATAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTTT
716 CGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTTT
2474028 GTCTTTGCCTTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTG
781 GTCTTTGCC-TATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTG
*
2474093 TCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGGGGGGTTGAAAGGTATGGGGACGA
845 TCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGA
2474158 ATTGGTGGCACCTTCCAGTCCTC-AA-A----G----C-----C--T--------ACATGAG
910 ATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
* * * * *
2474195 TCGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * * * * *
2474260 TGGCAGCTTTCAGTCTTAAAAGAGCCGGACGCCTTTTCTTTTCAAAGCCCTCATGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * * * *
2474325 ACCTTTTAG-CCGTCGAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTGGTGGCACC
131 ACCTTTTAGTCC-TCAAAGAGCAGGATG-C-----CTTT------TC-CTC----T--T--C-CC
* * * ** * ** * *
2474389 TTTTAGTCCTCAAAGAGCAAGACGCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
173 TCTT-GTCCTCAAAGAGCAGGTCG-TACTTCATTT------CC-TTC---TT--T-TC-CCTTTT
* *** * ** * *
2474454 AGTCCTCAAAAAGCA--G-G-A-TGGCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAAGACGCA
222 A-TCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTT-TCTTTTGTCCTCAAAGAGCAGGACGCA
* * * * * * * * * * *
2474514 CTTC-ATTTCCTTCTTTTCACTTTTTCCCTCAAAGAGTAGGACGCACTTTATTTTC-TTCTTT--
285 TTTCGTTTTCCTT-TTCTC-CTTTGT-CCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTCC
* * ** * * * * *
2474575 CTT-TTGTCCTCAAAGAGCATGACGTATTTCGTTTTCCTTTTCTCCTTTGTCGTC-AAAGAGTAG
347 CTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAA-AGCAG
* * * * ** *
2474638 GACGCTCTTCATTTCCCTCTTTTCCCTTCTAGTCCGCAA-AGAGCAGGACGCTCTTCAGTTCCTT
411 GACG----T--GTT--CT-TTTTCACTT-T-GTCCTCAAGA-AGCAGGACACT-TTCCTTTTCTT
* * * * *
2474702 CTTTTCCCTTCTAGTCCTCAAAGAG-TAGGACAC-ATTTCATTTTCCTTTTTTTCTTTGTCTTCG
463 -TTTT-CCTT-T-GTCCTCAAGGAGCGA-GAC-CTATTTCATTTT-C--TTTTCCTTTGTCCTCA
** *** ** * * * *** **
2474765 AAAAGCAGG--ACGTGTTCTTTTTCACTTCGTCC-T-CAAGAAG-CAGGACACTTTCTTTTTCTT
519 AAAAGTGGGACACCCCTTCCATTT-ATTTC--CCTTCCTA-AAGTC--TACA--TAAGTTGGC--
** * ** * * ** * *** *
2474825 TTTTCTTTTGTCCTCAACGAG-CGACACCTA-TT--T--CATTTTCTTTTCCTTTGTCCT-CAAA
574 --AAC-----ACC-CAAAAAGCCCACA-CAAGTTGGTGGCA--AACCTTTCCAAAG-CCTAC-AG
* *** * * *** ** ** * * * * * * **
2474883 AAATGGGACACCCTTTCCATTTATTTC-CCCTCCT--AAAGTTTGC-ATA---AGTTGGCAGCAC
626 TAA-CCAACA-CCTATCTAAGGAGGTCAAGCT-ATAGAAAATCT-CAAAACCTAGTAGGGAAAAC
* * * * * ** * * ** * *
2474941 ACA-AAAAGGC--CAAACAAATTGGTGGCAAAG-C-T--TTCCA-AGGCCTACAG-TAACCAACA
687 -CATAAAA-TCAAAAAAAAAATT--TTG-AATGTCGTCCTTTTACATGCATTTAGCTAAGC-A-T
* * ******* * * * ***** * *** ** ** * *
2474997 CCTATCTAAGGAGGTCAAGCTTTAGAAAA---TCTC-AAAACCTAGTAGGGAAAACCACAAAATC
745 TCT-TTTTTTTCCTTC-A-C-TGACAAAATGGTGTCTTTTGTCT--TTGCCTATTCCTGATACTC
* * ** * *** * ** *
2475058 AAAAAAAAAACATTTGAATGTCGTCCTTTCATATGCATTTAGCTAAGCATTCCTTTTTTTCCTTC
804 -AGAAACAGCCA----AA-G-AG---GGGC--A-GC-TGTAG---A-CA--CCTCATTTT--GTC
**** * ** *** * * ** ****
2475123 ACAGACAAAATGGTATCTTTTGTTTTTGCCCTATTCCTAATACTCAGA--AACAGCCAAAAAGGG
847 -C-GGGTTAA---T-T-TTTTG--GTAACCC-AAAGC-ATTACT-AGATGGAGGGGTTGAAA--G
* ** * * ** * * *** **
2475186 GCAGCTGTAGAC-ACCTCATTTTGTCCGGGTTAATTTTTCGGTAACC-C-AAG-GCATTACTAGA
898 GTA--TGGGGACGA----A-TTGGT---GG--CACCTTCCAGT--CCTCAAAGAGCGGGAC-ATC
****** * *** *
2475247 TGGAGGGGTTAAAAGGTGTGGGGACA--AA
948 T-TTTTCTTTCAAA-----GCCCACATGAG
** * * * * ***
2475275 TTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * * * *
2475340 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTT-AAAGCTCACGCAAGTTAGTGT
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
2475404 CACCTTTTAGTCCTCAAAGAGCAGGACGCATTTTCTTTTCAAAGCCCACACGAGTTGCTGGGACT
130 CACCTTTTAGTCCTCAAAGAGCAGGATGC-----CTTTT-------C-CTC---TT-C-----CC
* * * *
2475469 TTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTAC
173 TCTT-GTCCTCAAAGAGCAGG-T--C--GT--AC-T---TCAT-T--TC------C---T--T-C
* *
2475534 TTCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTTTTTCTTTT
211 -T--TTTCC--C--TT---TTATC-C-TCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTT
* * * ** * * * *
2475599 GCCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTAGCTTTTGTCCTT-AA-AG-AGCAGGATG
264 GTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATGCT-
* * ** ** * * *
2475661 C-GC--TTCATTTCCTTTT-TTTTC-CCTTCT-AGTCCTCAAAGAGCAGGACACATTTCGTTTTC
328 CTTCATTTCCTTT--TTTTCCCTTCTAGTCCTCA---A----AGAGCAGGACACATTTCATTTTC
* *
2475720 C-TTTTTTCTTTGTCCTCGGAAAGCAAGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGAC
384 CTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGAC
* *
2475784 ACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGA
449 ACTTTCCTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGT
*
2475849 CCTCAAAAAGTGGGACGCCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACAC
514 CCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACAC
*
2475914 CCAAAAAGCCTACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAA
579 CCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAA
* * * *
2475979 GTAGGTCAAGCTTTATAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAAT
644 GGAGGTCAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATC-AAAAAAAAAATT
* *
2476044 TTGTATGTCGTCCTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCA-TGGACAAAATG
708 TTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACT-GACAAAATG
*
2476108 GTGTCTTTTGGTC-TTGCGCTATTCCTGATACTCAGAAACAGCGAAAGAGGGGCAGCTGTAGACA
772 GTGTCTTTT-GTCTTTGC-CTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACA
* ** *
2476172 CCTCATTTTGTTCGGGTTAATTTTTCAGTAACCCAAAGCATTACTAGATGGAGGGGTTGCAAGGT
835 CCTCATTTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGT
* *
2476237 ATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGGGCGGGACATCTTTTTCTTTCAAACCCC
900 ATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCC
*
2476302 ACAAGAG
965 ACATGAG
*
2476309 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* *
2476374 TGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAGACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* *
2476439 ACTTTTTAGTCCTCAAAAAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
*
2476504 TACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
196 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* *
2476569 TTTGTCCTCAAAGAGCCGGACGCATTTCGTTTTCCTTTTCTCTTTTGTCCTTAAAGAGCAGGATG
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
*
2476634 CTCTTCATTTCCTTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTTATTTTCCTTTTT
326 CTCTTCATTTCC-TTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
*
2476699 TTCTTTGTCCTCAAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
390 TTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
* *
2476764 CTTCTCTTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGACCTCA
455 CTTTTC-TTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCA
* * *
2476829 AAAAGTGGGACACCCTTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACGCCCAAA
519 AAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAA
*
2476894 AAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCATACAGTAACCAACACCTATCTAAGGAGG
584 AAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGG
* *
2476959 TCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAAAATTTG
649 TCAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATC---AAAAAAAAAATTTTG
* * *
2477024 TATGTCGTCCTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGT
711 AATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGT
* * *
2477089 CTTTTTTTTTTGCGCTATTCCTGATACTCAGAAACAGCAAAAGAGGGGCAGCTGTAGACACCTCA
776 CTTTTGTCTTTGC-CTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCA
* * *
2477154 TTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGTATTACTAGATGGAGGGGTTGCAAGGTATGGG
840 TTTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGG
*
2477219 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATG
905 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATG
2477284 AG
970 AG
* **
2477286 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * *
2477351 TGTCACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * * *
2477416 ACTTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTCTTCCCTCTGGTCCTCAAAGAGCAAGTCG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
* *
2477481 TACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGAAGGGCGCACTTTATTTTCCTCTTTCT
196 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* * * *
2477546 TTTGTCCTCAAAGAGCAAGACGCATTTTGTTTT-CTGTTTCTCCTTTGTCCTTGAAGAGCTGGAT
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCT-TTTCTCCTTTGTCCTTAAAGAGCAGGAT
*
2477610 GCTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCATTTTCCTTTTT
325 GCTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
*
2477675 TTCTTTGTCTTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
390 TTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
* *
2477740 CTTTTCATTTTTCCTTTGTCCTTAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
455 CTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
* * * *
2477805 AATGTGGGACACCCCTTACATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAA
520 AAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAAA
* *
2477870 AACCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGT
585 AGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGT
* *
2477935 CAAGC-ATTAGAAAATCTCAAAACCTAGCAGGGAAAACCATAAAATCAAAAAAGAAATTTTGAAT
650 CAAGCTA-TAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAAT
* ** *
2477999 GTTGTTTTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTTTCCTTCACGGACAAAATGGTGTC
714 GTCGTCCTTTTACATGCATTTAGCTAAGCATTC--TTTTTTTTCCTTCACTGACAAAATGGTGTC
* *
2478064 TTTTGTCTTTGCCCTATTCCTGATACTTAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCAT
777 TTTTGTCTTTG-CCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCAT
* * * * * * *
2478129 TTTGTCTGGGCTAATTTTTTAGAAACCCAAAGCATTACTAGATCGAGGGGTCGAAAGGTATGGCG
841 TTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGG
* * * *
2478194 ACGAATTGGTGGCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTTTTTCAAATCCCACACGA
906 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGA
2478259 G
971 G
* * * * ** *
2478260 TTGGTGGCACCTTTTAGTGCTTAAAGAG-GGGACGTCTTTTTCTTTTAACGCGTAGGCAAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * * * *
2478324 TGGTAGCTTTTAGTCCTAAAAGAGCTGGACGCCTTTTCTTTGCAAAGCCCTCACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * * ** * * ** ** *
2478389 ACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTT--TCTT---TCAAAGCCCACGCA-AGTTGGTG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTC-TTGTCCTCAAAGAGCAGGTC
* * * **** * ** * *
2478448 GCACCTTTCA-GTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
195 GTA-C-TTCATTTCCT------TCTTTTC-CCTTTTATCCTCAAAG---A-GC-AG--GG-CGCA
* * *** ** * * * *
2478512 CTTT-TTAGTCCCCAAAGAGCAGGACGCCTTGTCGTCAAAGAGTAGGACGCACTTC-ATTTCCTT
243 CTTTATT--T-TCC-----TC-TTTC-TTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT
* * * * * * *
2478575 CTTTTCCTTTTTGCCCTCAAAGAGCAGGACGCACTTTATTTTCC--TTTTT--CTT-TTGTCCTC
298 -TTCTCC--TTTGTCCTTAAAGAGCAGGATGCTCTTCA-TTTCCTTTTTTTCCCTTCTAGTCCTC
* * * *
2478635 AAAGAGCAGGACGCATTT-AGTTTTCCTTTTCTCCTTTGTCCTC-AAAGAGTAGGACGCTCTTAA
359 AAAGAGCAGGACACATTTCA-TTTTCCTTTTTTTCTTTGTCCTCGAAA-AGCAGGACG----T--
* * * * * *
2478698 TTTCCTTCTTTTCCCTTCTAGCCCTC-AGAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTTC
416 GTT-C-T-TTTTCACTT-T-GTCCTCAAGA-AGCAGGACACT-TTCCTTTTCTT-TTTT-CCTT-
* * * **
2478762 TAGTCCTCAAAGAGC-AGGACAC-ATTTCATTTTCCTTTT-TTTTGTCCTCGAAAAGCAGGACGT
471 T-GTCCTCAAGGAGCGA-GAC-CTATTTCATTTT-CTTTTCCTTTGTCCTCAAAAAGTGGGAC--
** * * * ***** * * * *** ** ****
2478824 ACTCTTTTTCACTT-TGTCCTCAAGAAACAGGACGCTTTCCTTTTCTTTTTTCCTTTGTCCTCAA
530 AC-CCCTTCCATTTATTTCC-CTTCCTA-A--A-G-TCTAC--AT-AAGTTGGC-AACACC-CAA
** * * * ** * *** ** *** *
2478888 GGAG-CGAGACCTA-TT--T--CATTTTCTTTTCCTTTGTCCT-CAAAAAGTGGGACACCCATTC
583 AAAGCCCACA-CAAGTTGGTGGCA--AACCTTTCCAAAG-CCTACAGTAA--CCAACACCTA-TC
* *** ** ** * * * * * * * * * ** * *
2478946 CATTTATTTC-CCCTCCT--AAAGTTTGC-ATA---AGTTGGCAGCACCCA-AAAAGC-CCACAC
641 TAAGGAGGTCAAGCT-ATAGAAAATCT-CAAAACCTAGTAGGGA-AAACCATAAAATCAAAAAAA
* * **** * * * ** * * *
2479002 AAA--TTG-GTGGCAAAGTTTTCCAAAGCCTACAG-TAACCA-AC-------ACC-T-ATCT-A-
703 AAATTTTGAATGTCGTCCTTTTAC-ATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCA-CTGAC
** * **** * ** ** **
2479051 AGGA-GGTCAAG-CTTTAGAAAAT-CTCAAAACCT-AGTA--GGGAAA-A-CCATAA-A--ATCA
766 AAAATGGT---GTCTTTTGTCTTTGC-CTATTCCTGA-TACTCAGAAACAGCCA-AAGAGGGGCA
**** * * ** * * * *** *** * * **
2479105 -AAAAAAAAATTTGAATGTCGT-CATTTTACATGCATT--T-A-GCTAAGCATT-CT---T--TT
825 GCTGTAGACACCT-CATTTTGTCCGGGTTA-ATTTTTTGGTAACCCAAAGCATTACTAGATGGAG
*** ** *** * ** * *
2479158 TTCTTTCAA---A-GCCCACGCAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGAC-GCCTT
888 GGGTTGAAAGGTATGGGGACG-AA-TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTT
* * *
2479218 TTCTTTTCCAAGCACACACGAG
951 TTC-TTTCAAAGCCCACATGAG
** * * ** * * *
2479240 TTGGTGGCAATTTTTAGTCCTCAAAAAGTAGGACACCTTTTCCTCTT-----CC-C-C---TTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
** ***** ** *
2479295 TCCTCAAAGAGTAGGACGCAAAGAGCAGGACG-----------CAAAGCCCACACGAGTTGGTGG
66 T-GGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* *
2479349 CACTTTTTAGTCCTCAAAGAGCAGGATGCCCTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTC
130 CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTC
* * * **
2479414 ATACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGATGCACTTTATTTT-C-C--TC
195 GTACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTC
* *
2479475 TTTTGTCCTCAAAGAGCAGGATC-CATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGA
260 TTTTGTCCTCAAAGAGCAGGA-CGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGA
* * * * *
2479539 CGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTT
324 TGCTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTT
* * * * * *
2479604 TTCCTTTGTCCTCAAAAAGTAGGACGTATTCTTTTTCTCTTTGTCCTCAATAAGCAGGACACTTT
389 TTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTT
2479669 CC-TTTCTTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTCTT-TTTTCCTTTGTCCT
454 CCTTTTC-TTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATT-TTCTTTTCCTTTGTCCT
* * * * * * *
2479732 CAAAAAGCGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTGTGCATACGTTGGTAGCACCCA
517 CAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCA
* * * *
2479797 AAAAGCCCACACAAGTTGGGGGCAAACCTTTCCAAAGCCTATAGTAACCAACACCTATCAAAAGA
582 AAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGA
* * * * * * *
2479862 GGTCAATCTTTATAAAATCTCAAAATCTAGTAGGGAAACCCATAAAAT-AAAAAGAACAA--TCG
647 GGTCAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAA-AAAAATTTTG
* * *
2479924 AATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTCTTTTCCTTCACGGATAAAATGGTGT
711 AATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGT
** *
2479989 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGTTGCTGTAGACAACTCA
776 CTTTTGTCTTTG-CCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCA
* * * * *
2480054 TTTTGTCCGGGCTAATTTTTCGGTAACCCAAAGCATTACTAGATAGA-GGGTTCAAAAGGTATGA
840 TTTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTT-GAAAGGTATGG
* * * * * *
2480118 GGACAAATTGGTGGAACCTTCTAGTCCTCAAAGAGCAGGACATCTTTTTCCTTCGAAGCCCAC-T
904 GGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACAT
*
2480182 CGGG
969 -GAG
* * *
2480186 TTGGTAGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTATTTCATTTAAAGCCCACGCAAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * *
2480251 TGGCAGCTTTCAGTCCTTAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * *
2480316 ACCTTTTAGTCCTCAAACAGCAGGACGTCTTTTTCTTTTAAAGCCCGCGCAAGCTGATGGCACCT
131 ACCTTTTAGTCCTCAAAGAGCAGGATG-C-----CTTTT--------C-C--TCT--T--C-CCT
* * * * ** * *
2480381 -TTCAGTCCTCAAAGAGCAAGACGCCT-TTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTT
174 CTT--GTCCTCAAAGAGCAGGTCG--TACTTCATTT------CC-TTC---TT--T-TC-CCTTT
* * *
2480444 TAGTCCTCAAAGAGCAGGACGCACTTCATTCCTCCT-TTTCCCTTTTGTCCTCAAAGAGCAGGAC
221 TA-TCCTCAAAGAGCAGGGCGCACTTTATT-TTCCTCTTT--CTTTTGTCCTCAAAGAGCAGGAC
* * * * * *
2480508 GCACTTT-ATTTTTCTCTTTCT--TTTGTCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTCT
282 GCA-TTTCGTTTTCCT-TTTCTCCTTTGTCCTTAAAGAGCAGGATGC---TC---TT-C-ATT-T
** *
2480570 CCTTTGTCCTCAAAGAGTGGGATGCTCTTCATTTCCTTCTTTTCCCTTCTAATCCTCAAAGAGTA
336 CC----T--T-------T----T--T-TTC----CCTTCTAGT-CC-TC--A------AAGAGCA
* * * ** *
2480635 GGACACATTTCGTTTTCCTTTTTTCCTTTGTCCTCGAAAAGCAAGACGTACTCTTTTCCACTTTG
367 GGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTG
* * *
2480700 TCCTCAAGAACCAGGACACTTTCCTTTCCTTTTTTTCCTTTGCCCTCAAGGAGCGAGACCTATTT
432 TCCTCAAGAAGCAGGACACTTTCCTTTTC-TTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTT
* * * * * *
2480765 CATTCTCTTTTTCTTTATCCTCAAAAAGTGGGACACCTCTTCCACTTATTTCCCCTCCTAAAGTC
496 CATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTC
* * * * *
2480830 TGCATAAGCTAGCAGCACTCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAG
561 TACATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAG
* * * *
2480895 TAACCAACACGTATCTAAGCAGGTCAAGCTTTAGAAAAACTCAAAACCTAGTAGGGAAAACCATA
626 TAACCAACACCTATCTAAGGAGGTCAAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATA
* *
2480960 AAATCAAAAAAAAAA-TTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCATTC-TTCTTTTC
691 AAATCAAAAAAAAAATTTTGAATGTCGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTC
* * * * * * *
2481023 CTTCACGGGCAAAATGGCGCCTTTTGTCCTTGCCCTATTCCTGATACTTAGAAACAGCC--GGA-
756 CTTCACTGACAAAATGGTGTCTTTTGTCTTTG-CCTATTCCTGATACTCAGAAACAGCCAAAGAG
* * ** * * * ** * ** *
2481085 CGCCTTTTCTTTTCAAAGC-CCACACGAGTTGAT---GG--CACCTTTTAGT--CCTCAAAG-A-
820 GGGC--AGC-TGT-AGA-CACCTCA--TTTTG-TCCGGGTTAATTTTTTGGTAACC-CAAAGCAT
* *** ****** * *** * *
2481140 -GC---A-GGACGCCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGCACCTTTCAGTCCTCCAAG
876 TACTAGATGGA-GGGGTTGAAAGGT-ATGGGGACG-AA-TTGGTGGCACCTTCCAGTCCTCAAAG
** * * * *
2481200 AGTAGGAC-GCCTTTTCTTTTTAAAGCCCACACGAG
937 AGCGGGACATCTTTTTC-TTTCAAAGCCCACATGAG
* *
2481235 TTGGTGGCACTCCTTTCCTATTCCCCCTTATCCTCAAAGAGCAGGACGCCTTTTCCTATTCCCCC
1 TTGGTGGCA--CCTTT--TA---------GTCCTCAAAGAGCAGGACG--TCTT--T-TT----C
** * * ** ** *
2481300 TTATCCTCAAAGAGCAGGATGCACTTCATTTCCTTCCTTTCCCTTTT-GTCCTCAAAGAGCAGGA
44 TT-T--T--AA-AGC-CCACGCA----AGTTGGTGGC---ACCTTTTAGTCCTCAAAGAGCAGGA
* *
2481364 CGCAC-TTTATTTT-------C-CTC---TT--T-----CTTTT-GTCCTCAAAGAGCAAGACGC
95 CGC-CTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGC-AG--G-
* * * * * *
2481409 ATTTCGTTTTCCTTTTCTCCT-TTGTCCTCAAATAGCAGGACGCT-CTTCTTTTCCTTCTTTTCC
155 A-TGCCTTTTCCTCTTC-CCTCTTGTCCTCAAAGAGCAGGTCG-TACTTCATTTCCTTCTTTTCC
* * * * * * *
2481472 CTTCTAGCCCTCAAAGAGCAGGACACA-TTTCGTTTTCCTTTTTTCCTTTGTCCTCGAAA-AGCA
217 CTTTTA-TCCTCAAAGAGCAGGGCGCACTTT-ATTTTCC-TCTTTCTTTTGTCCTC-AAAGAGCA
* * * ** *
2481535 GGACG---TAC----T-CTTTT-TCACTTTGTCC-TCAAGAAGTAGGACACT-TTCCTTTCC-TT
278 GGACGCATTTCGTTTTCCTTTTCTC-CTTTGTCCTTAAAG-AGCAGGATGCTCTTCATTTCCTTT
* * * *
2481588 TTTT-CCTT-T-GTCCTCAAGGAGC-GAGAC-CTATTTCA--TT-CTCTTTTCCTTTGTCCTCAA
341 TTTTCCCTTCTAGTCCTCAAAGAGCAG-GACAC-ATTTCATTTTCCTTTTTTTCTTTGTCCTCGA
** *** * * ** *
2481645 AAAGTGGGACACCCCTTCCATTTATTTCCCCTCCTAAAGT-CTGCATAAGTTGGCAGCACCTAAA
404 AAAGCAGG--ACGTGTT-C--TT-TTT-CACT--T--TGTCCT-C--AAG-AAGCAGGA-C----
*** * *** *** ** * * * * * ****
2481709 AAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAG-CCTACAATAACCAACACCTATCTAAGGAG
449 -A-CTTTC-C---TT--T-TC--TTTTTTCCTTTGTCCT-CAAGGAGCGAGACCTATTTCATTTT
* **** * * * * *** ***
2481773 GTCAAGCTTTAGAAAAT-CTCAAAACCTAGTAGGGAAAACCATGAAATCAAAAAAAAAATTTAAA
502 CTTTTCCTTT-G----TCCTCAAAA---AGT-GGGACACCCCT----TC----CATTTATTTCCC
* *** * * * * ******** * *
2481837 TGTCGT-CCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACATA-ATGGTGT
550 T-TCCTAAAGTCTACAT-AAGTTGGC-AA-CA--CCCAAAAAGCC--CAC--ACA-AGTTGGTGG
**** * ** * * * ** * *
2481900 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAGCC-A---AAGAGGGGT-AA-CTGTAG-A
604 C--AAACCTTT--CCAAAGCCT-ACAGTAACCAACA-CCTATCTAAG-GAGGTCAAGCTATAGAA
* * ** * ** **** * * ** ** * * ** ***
2481958 CACCTCATTTTATCT-G--GGTTAATGTTTCAGAAACCCAAAGCATTA-CTAG-ATGGAG-GGGT
662 AATCTCA--AAACCTAGTAGGGAAAACCAT-A-AAATCAAAAAAAAAATTTTGAATGTCGTCCTT
** * * * * ** * * * ***** * * **
2482017 CGA-AAG-GTATGGGGACGAATTGGTGGCACCTTCCAGTC-CT--CAAAGAGCAGGACATCTTTT
723 TTACATGCATTTAGCTAAGCATT-CT-TTTTTTTCC-TTCACTGACAAA-A--TGG-TGTCTTTT
* ** ** ***** ** **
2482077 -TCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTTAGTGCTCAAAGAGTAGGACGTCTTTTTC
781 GTCTTT----G----C-CTA-TTCCTGATACTCAGAAACAGC-CAAAGAG--GG--G-C---AGC
* * * ** * *** ** * * *
2482141 TTTTA-ACGCGCAGGCAAGTTG---GTGG--CAGCCTTCAGT--CCTAAAAG-AGT-C-GGATGC
827 -TGTAGACAC-C--TCATTTTGTCCG-GGTTAATTTTTTGGTAACC-CAAAGCATTACTAGATG-
****** * *** * * * ** * ** *
2482195 CTTTTCTTTTCAAAGCCCT---CACGAGTTGGTGGCATCTTTTATTCCTCAAAGAGCAAGACGT-
885 --GAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATC
* *
2482256 TTTTTTTTTCAAAACCCACATGAG
948 TTTTTCTTTCAAAGCCCACATGAG
* *
2482280 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGTAAGTTAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
** * * * * *
2482345 TGTTACCTTTTAGTCCTCAAAGAGCAAGACTCATTTTCTTTGCAAAGCCCACACGGGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * * * *
2482410 ACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
* * * *
2482475 CACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCATTTTATTTTCCTCTTTCT
196 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* * * * * * *
2482540 TTGGTCCACAAAAAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTATCCTCAAAGAGTAGGACG
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
*
2482605 CTCTTCATTTCCTTCTTTTCCCTTTTAGTCAGCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTT
326 CTCTTCATTTCCTTTTTTTCCC---T--T---C------T---A-G------------------T
2482670 CCTTTCTAGTCCTTAAAGAGCAGGACACATTTCATTTTCC--TTTTT-TTTGTCCTCGAAAAGCA
355 CC--TC-A-------AAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCA
* * *
2482732 GGACGTGCTCTTTTTCACTTTGTCCTCAAGCAA-CATGACACTTTCTTTTTCTTTTTTCCTTTGT
410 GGACGTGTTCTTTTTCACTTTGTCCTCAAG-AAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGT
2482796 CCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCC
474 CCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCC
* * * ** * * *
2482861 ATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCGGCACCTAAAAAGCCCACACAAATTGGGGG
539 ATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGG
* * * *
2482926 CAAAGCTTTCCAAAGCCTACAATAACCAACACCTATCTAAAGAGGTCAAGCTTTAGAAAATCTCA
604 CAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTATAGAAAATCTCA
* * * * *
2482991 AAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAAAATTTGAATGTCATCTTTTTACAAGCATT
669 AAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAATGTCGTCCTTTTACATGCATT
* *
2483056 TAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTG
734 TAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTTTGTCTTTG-CCTATTCCTG
* * * *
2483121 ATACTCAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCACTTTGTCTGGGTTAATTTTTCGG
798 ATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTTGG
*
2483186 TAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTGTGGGGACGAATTGGTGGCACCTTCCAG
863 TAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAG
*
2483251 TCCTCAAAAAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
928 TCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
*
2483295 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
**
2483360 TTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * * *
2483425 ACTTTTTAGTCCTCAAAGACCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGAAAGTCG
131 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
* * *
2483490 TACTTCATTTCCTTCTTTTCCTTTTTATCCTCAAAGAGTAGGGCGTACTTTATTTTCCTCTTTCT
196 TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
* * * *
2483555 TTTATCCTCAAAGAGCAGGACGTATTTCGTTTTCCATTTCTCCTTTGTCCTTAAAGTGCAGGATG
261 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
*
2483620 CTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGGCAAGACACATTTCATTTTCCTTTTT
326 CTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGA-GCAGGACACATTTCATTTTCCTTTTT
** *
2483685 TTCTTTGTTTTCAAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
390 TTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
2483750 CTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
455 CTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
* * *
2483815 AAAGTGGGACACCCCTTGCATTTATTTCCCTTCCTAAAGTCTAAATAAGTTGGCAGCACCCAAAA
520 AAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAAA
* *
2483880 AGCCCACATAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGT
585 AGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGT
* *
2483945 CAAGC-ATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAGATTTTGAAT
650 CAAGCTA-TAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAAT
* *
2484009 G-CTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGTC
714 GTC-GTCCTTTTACATGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACTGACAAAATGGTGTC
* * * * *
2484073 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCAT
777 TTTTGTCTTTG-CCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCAT
* * * * * *
2484138 TTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATTGAGGGGTCGAAAGGTATGGGG
841 TTTGTCCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGG
** * *
2484203 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAGGCCCACACGA
906 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGA
2484268 G
971 G
* * * * * *
2484269 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
* * * * *
2484334 TGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
2484399 ACCTTTTAGTCCTCAAAGAGC
131 ACCTTTTAGTCCTCAAAGAGC
2484420 TGGACGTCTT
Statistics
Matches: 10579, Mismatches: 2404, Indels: 2454
0.69 0.16 0.16
Matches are distributed among these distances:
910 14 0.00
911 16 0.00
912 12 0.00
913 11 0.00
914 5 0.00
915 16 0.00
916 12 0.00
917 14 0.00
918 1 0.00
919 1 0.00
920 9 0.00
921 6 0.00
922 5 0.00
923 42 0.00
924 4 0.00
925 6 0.00
926 10 0.00
927 13 0.00
928 24 0.00
929 8 0.00
930 12 0.00
931 4 0.00
932 5 0.00
933 2 0.00
934 13 0.00
935 33 0.00
936 5 0.00
937 28 0.00
938 20 0.00
939 55 0.01
940 3 0.00
941 1 0.00
942 1 0.00
943 2 0.00
944 2 0.00
945 104 0.01
946 118 0.01
947 11 0.00
948 3 0.00
949 1 0.00
950 7 0.00
951 5 0.00
952 5 0.00
953 4 0.00
955 19 0.00
956 4 0.00
958 14 0.00
959 4 0.00
960 1 0.00
961 50 0.00
963 5 0.00
964 5 0.00
965 11 0.00
966 55 0.01
967 2 0.00
968 14 0.00
969 34 0.00
970 473 0.04
971 703 0.07
972 152 0.01
973 558 0.05
974 660 0.06
975 474 0.04
976 191 0.02
977 970 0.09
978 23 0.00
979 71 0.01
980 97 0.01
981 51 0.00
982 22 0.00
983 34 0.00
984 23 0.00
985 19 0.00
986 7 0.00
987 13 0.00
988 26 0.00
989 19 0.00
990 28 0.00
991 68 0.01
992 24 0.00
993 40 0.00
994 31 0.00
995 49 0.00
996 31 0.00
997 18 0.00
998 39 0.00
999 17 0.00
1000 18 0.00
1001 14 0.00
1002 44 0.00
1003 17 0.00
1004 20 0.00
1005 89 0.01
1006 58 0.01
1007 103 0.01
1008 27 0.00
1009 66 0.01
1010 115 0.01
1011 106 0.01
1012 66 0.01
1013 15 0.00
1014 65 0.01
1015 373 0.04
1016 47 0.00
1017 67 0.01
1018 46 0.00
1019 38 0.00
1020 26 0.00
1021 37 0.00
1022 37 0.00
1023 54 0.01
1024 485 0.05
1025 236 0.02
1026 95 0.01
1027 133 0.01
1028 73 0.01
1029 108 0.01
1030 340 0.03
1031 238 0.02
1032 180 0.02
1033 168 0.02
1034 398 0.04
1035 118 0.01
1036 54 0.01
1037 59 0.01
1038 39 0.00
1039 44 0.00
1040 24 0.00
1041 13 0.00
1042 5 0.00
1043 57 0.01
1044 17 0.00
1045 90 0.01
1046 101 0.01
1047 71 0.01
1048 50 0.00
1049 95 0.01
1050 45 0.00
1051 81 0.01
1052 53 0.01
1053 129 0.01
1054 309 0.03
1055 106 0.01
1056 42 0.00
1057 12 0.00
1058 28 0.00
1059 82 0.01
1060 23 0.00
1061 27 0.00
1062 64 0.01
1063 10 0.00
1064 12 0.00
1065 35 0.00
1066 10 0.00
1067 11 0.00
1068 10 0.00
1069 29 0.00
1070 30 0.00
1071 74 0.01
1072 84 0.01
1073 160 0.02
1074 376 0.04
1075 56 0.01
1076 61 0.01
1077 96 0.01
1078 80 0.01
1079 59 0.01
1080 167 0.02
1081 67 0.01
1082 63 0.01
1083 43 0.00
1084 51 0.00
1085 80 0.01
1086 79 0.01
1087 8 0.00
1088 14 0.00
1089 44 0.00
1090 41 0.00
1091 58 0.01
1092 42 0.00
1093 40 0.00
1094 8 0.00
1095 14 0.00
1096 99 0.01
1097 23 0.00
1098 57 0.01
1099 16 0.00
1100 90 0.01
1101 58 0.01
1102 135 0.01
1103 34 0.00
1104 5 0.00
1105 5 0.00
1106 28 0.00
1107 17 0.00
1108 20 0.00
1109 23 0.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (971 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCG
TACTTCATTTCCTTCTTTTCCCTTTTATCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCT
TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
CTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTT
TCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCC
TTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAA
AAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTACATAAGTTGGCAACACCCAAAAA
GCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTC
AAGCTATAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAATGT
CGTCCTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTTT
GTCTTTGCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGT
CCGGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAA
TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
Found at i:2471205 original size:61 final size:60
Alignment explanation
Indices: 2471116--2471459 Score: 346
Period size: 61 Copynumber: 5.6 Consensus size: 60
2471106 AGGTATGTGG
* ** *
2471116 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2471177 ATGAGTTGGTGGCACTTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCAC
* * * * * * * * * *
2471238 GCAAGTTGGTGGCAGCTTTCAGTCCTAAAAGAGCCGGACGCCTTTTCTTTTTAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTCTTTTTC-TTTCAAAGCCCAC
* * * *
2471299 ATGAGTTGGTGGCACCTTTTAGCCCTCGAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCAC
* * * * *
2471360 GCAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCTTTTCAAAGCCCAT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTC-TTTTTC-TTTCAAAGCCCAC
* *
2471422 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAAAGCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2471460 TGGCTTTTCC
Statistics
Matches: 225, Mismatches: 54, Indels: 7
0.79 0.19 0.02
Matches are distributed among these distances:
60 7 0.03
61 167 0.74
62 51 0.23
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCAC
Found at i:2471294 original size:122 final size:122
Alignment explanation
Indices: 2471121--2471459 Score: 446
Period size: 122 Copynumber: 2.8 Consensus size: 122
2471111 TGTGGACGAA
* **
2471121 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGACATCTTTT-TCTTTCAAAGCCCACATGAGTTG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACATGAGTTG
* * * * *
2471185 GTGGCACTTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCAGGCAAG
65 GTGGCACTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
* * ** * *
2471243 TTGGTGGCAGCTTTCAGTCCTAAAAGAGCCGGACGCCTTTTCTTTTTAAAGCCCTCATGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACATGAGTTGG
* * * *
2471308 TGGCACCTTTTAGCCCTCGAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
66 TGGCACTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
* * * *
2471365 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCTTTTCAAAGCCCATACGAGTTG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGC-CTTTTCTTTTCAAAGCCCACATGAGTTG
*
2471430 GTGGCACTTTTTAGTCCTCAAAAAGCAGGA
65 GTGGCACTTTTTAGTCCTCAAAGAGCAGGA
2471460 TGGCTTTTCC
Statistics
Matches: 182, Mismatches: 33, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
122 133 0.73
123 49 0.27
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (122 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACATGAGTTGG
TGGCACTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
Found at i:2471533 original size:45 final size:43
Alignment explanation
Indices: 2471479--2471717 Score: 243
Period size: 42 Copynumber: 5.5 Consensus size: 43
2471469 CTCTTCCCCC
*
2471479 TTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACT
1 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTC-CT
* * * *
2471523 TTTTCCCTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTT-TT
1 TTGT-CCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
* * * * *
2471566 TTGTCCTCAAAAAGCAGGACGCATTTCGTTTTCCTT-TTCTCCT
1 TTGTCCTCAAAGAGTAGGACGCACTTC-ATTTCCTTCTTTTCCT
*
2471609 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTT-CCT
* * * *
2471653 TCTAGTCCGCAAAGAGCAGGACGCTCTTCATTTCCTT-TTTTTCT
1 T-T-GTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
*
2471697 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGTAGGACG
2471718 TACTCTTTTT
Statistics
Matches: 165, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
42 42 0.25
43 42 0.25
44 10 0.06
45 40 0.24
46 31 0.19
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (43 bp):
TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
Found at i:2471668 original size:46 final size:44
Alignment explanation
Indices: 2471479--2471717 Score: 224
Period size: 45 Copynumber: 5.5 Consensus size: 44
2471469 CTCTTCCCCC
* * *
2471479 TTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACT
1 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
* * * * *
2471523 TTTTCCCTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTT--TT
1 TTGT-CCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
* * * *
2471566 TTGTCCTCAAAAAGCAGGACGCAT-TTCGTTT--TCCTTTTCTCCT
1 TTGTCCTCAAAGAGTAGGACGC-TCTTCATTTCCTTCTTTTC-CCT
2471609 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
* * *
2471653 TCTAGTCCGCAAAGAGCAGGACGCTCTTCATTTCCTT-TTTT-TCT
1 T-T-GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
*
2471697 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGTAGGACG
2471718 TACTCTTTTT
Statistics
Matches: 164, Mismatches: 20, Indels: 24
0.79 0.10 0.12
Matches are distributed among these distances:
40 6 0.04
42 35 0.21
43 35 0.21
44 10 0.06
45 47 0.29
46 31 0.19
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (44 bp):
TTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCT
Found at i:2471694 original size:130 final size:130
Alignment explanation
Indices: 2471464--2471717 Score: 352
Period size: 130 Copynumber: 1.9 Consensus size: 130
2471454 GCAGGATGGC
* *
2471464 TTTTCCTCTTCCCCCTTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTTTCC
1 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTGTCC
* *
2471529 CTTAAAGAGTAGGACGCACTTTATTTCCTTCTTTTT-TTTGTCCTCAAAAAGCAGGACGCATTTC
66 C-TAAAGAGCAGGACGCACTTCATTTCCTTCTTTTTCTTTGTCCTCAAAAAGCAGGACGCATTTC
2471593 G
130 G
* * * * *
2471594 TTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGT
1 TTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTT-T-GT
* *
2471659 CCGC-AAAGAGCAGGACGCTCTTCATTTCCTT-TTTTTCTTTGTCCTCGAAAAGCAGGACG
64 CC-CTAAAGAGCAGGACGCACTTCATTTCCTTCTTTTTCTTTGTCCTCAAAAAGCAGGACG
2471718 TACTCTTTTT
Statistics
Matches: 109, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
130 59 0.54
131 46 0.42
132 3 0.03
133 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (130 bp):
TTTTCCTCTTCCCCCTTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCACTTTGTCC
CTAAAGAGCAGGACGCACTTCATTTCCTTCTTTTTCTTTGTCCTCAAAAAGCAGGACGCATTTCG
Found at i:2472437 original size:61 final size:61
Alignment explanation
Indices: 2472212--2472440 Score: 264
Period size: 61 Copynumber: 3.8 Consensus size: 61
2472202 AGGTATAGGG
* ** * ***
2472212 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATTTTTTC-TTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
* * * *
2472272 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT-TCTTCTAAAGCCCAT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTC-AAAGCCCAC
* * * * * *
2472333 GCAAGTTAGTGTCTCCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
* *
2472394 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2472441 CTCTTCCCTC
Statistics
Matches: 139, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
60 42 0.30
61 93 0.67
62 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
Found at i:2472669 original size:47 final size:46
Alignment explanation
Indices: 2472454--2472669 Score: 132
Period size: 47 Copynumber: 4.8 Consensus size: 46
2472444 TTCCCTCTTT
* ** * * **
2472454 TCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTTTTCCCTTTTC
1 TCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCCCTTTAG
* * * *
2472499 TCTTCAAAGAGTAGGGTGCAC-TTT-ATTTTCC--TTTTT--CTTTTG
1 TCCTCAAAGAGCA-GG-ACACATTTCATTTTCCTTTTTTTCCCTTTAG
* * * * *
2472541 CCCTCAAAAAGCAGGACACATTTCGTTTTCC---TTTTCGCTTTTG
1 TCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCCCTTTAG
* **
2472584 TCCTTAAAGAGCAGGATGC-TCTTCA-TTTCCTTTTTTTTCCCTTCTAG
1 TCCTCAAAGAGCAGGACACAT-TTCATTTTCC-TTTTTTTCCCTT-TAG
2472631 TCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTC
1 TCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTC
2472670 TTTGTCCTAG
Statistics
Matches: 131, Mismatches: 25, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
40 3 0.02
41 9 0.07
42 26 0.20
43 23 0.18
44 4 0.03
45 12 0.09
46 17 0.13
47 31 0.24
48 6 0.05
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.43
Consensus pattern (46 bp):
TCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCCCTTTAG
Found at i:2472782 original size:42 final size:40
Alignment explanation
Indices: 2472695--2472796 Score: 102
Period size: 41 Copynumber: 2.5 Consensus size: 40
2472685 TAGGACGTGT
*
2472695 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATTC
* *
2472736 TCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTC
*
2472778 TC-TTTTCCTTTGACCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2472797 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
40 18 0.34
41 21 0.40
42 14 0.26
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.43
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATTC
Found at i:2473135 original size:972 final size:972
Alignment explanation
Indices: 2471243--2478409 Score: 5899
Period size: 972 Copynumber: 7.2 Consensus size: 972
2471233 CGCAGGCAAG
* * * * * * * * *
2471243 TTGGTGGCAGCTTTCAGTCCTAAAAGAGCCGGAC-GCCTTTTCTTTTTAAAGCCCTCATGAGTTG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTC-TTTCAAACCCCACATGAGTTG
* * * * * *
2471307 GTGGCACCTTTTAGCCCTCGAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAGTTGGTGG
65 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGT
* * *
2471372 CACCTTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCTTTTCAAAGCCCATACGAGTTGGTGGCAC
130 CACCTTTTAGTCCTCAAAGAGCAGGACGC-CTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
2471437 TTTTTAGTCCTCAAAAAGCAGGATGGCTTTTCCTCTTCCCCCTTGTCCTTAAAGAGTAGGACGCA
194 TTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTA
* * * * *
2471502 CTTCATTTCCTTCTTTTCACTTTTTCCCTT-AAAGAGTAGGACGCACTTTA-TTTCCTTCTTTTT
259 CTTCATTTCCTTCTTTTC-CCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCC-TCTTTCT
* * * *
2471565 TTTGTCCTCAAAAAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGACG
322 TTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATG
* * *
2471630 CTCTTCATTTCCTTCTTTTCCCTTCTAGTCCGCAAAGAGCAGGACGC-TCTTCA-TTTCCTTTTT
387 CTCTTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACAT-TTCATTTTCCTTTTT
** * *
2471693 TTCTTTGTCCTCGAAAAGCAGGACGTACTCTTTTTCACTTTGTCCACAAGAAACAGGACACTTTC
451 TTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTC
* * *
2471758 CTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGAGGCCTATTTCATTTTCTTTTCCTTTGTCCTCTA
516 CTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAA
* * * * * *
2471823 AAATTCGGACACCCCTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAGCACCTAAAA
581 AAAGTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAA
* * *
2471888 AGCCCAAACAAATTGGTGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGT
646 AGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGT
* *
2471953 CAAGCTTTAGAAAATCTAAAAACGTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTTTGAA
711 CAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAA--TTTGAA
* *
2472018 TGTCGTCTTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCT
774 TGTCGTCCTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCT
* *
2472083 TTTGTTTTTGCCCTATTCCTAATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATT
839 TTTGTTTTTGCGCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATT
* *
2472148 CTG-CCTGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATAGGG
904 TTGTCC-GGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGG
2472212 ACGAA
968 ACGAA
*
2472217 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACAT-TTTTTCTTTCAAAGCCCACATGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
* *
2472281 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTCTAAAGCCCATGCAAGTTAGTGTC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
* *
2472346 TCCTTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
131 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
*
2472411 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTTTCCTCAAAGAGCAGGTCGTACT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
* * *
2472476 TCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGTAGGGTGCACTTTATTTTCCTTTTTCTTTTG
261 TCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTG
* * * * *
2472541 CCCTCAAAAAGCAGGACACATTTCGTTTTCCTTTTCGCTTTTGTCCTTAAAGAGCAGGATGCTCT
326 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATGCTCT
2472606 TCATTTCCTTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
391 TCATTTCC-TTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
* *
2472671 TTGTCCTAGAAAAGTAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
455 TTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
*
2472736 TCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAG
520 TCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAG
2472801 TGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCC
585 TGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCC
*
2472866 CACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCAAG
650 CACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAG
*
2472931 CTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGTATGTCGT
715 CTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAATGTCGT
*
2472996 CCTTTTGCATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTT
780 CCTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTT
* * *
2473061 TTTACGCTATTCCTGATACTCAGAAACAGCGAAAGAGGAGCAGCTGTAGACACCTCATTTTGTCC
845 TTTGCGCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCC
*
2473126 GGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGCAAGGTATGGGGACGAA
910 GGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAA
* *
2473189 TTGGTGGCACTTTCCTGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
2473254 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
2473319 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCACTT
131 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
2473383 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
* ** *
2473448 TCATTTCCTTCTTTTCCCTTTTATCCACAAAGAGCAGGGAGCACTTTATTTTCCTCTTTCTTTTG
261 TCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTG
* * *
2473513 TCCTCAAAGAGCATGACGCATTTCATTTTCCTTTTCTCCTTTGTGCTTAAAGAGCAGGATGCTCT
326 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATGCTCT
* *
2473578 TCGTTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACCCATTTCATTTTCCTTTTTTTCTT
391 TCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTT
* * *
2473643 TGTCCTCGAAAAGCAGAACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAAGACACTTTCCTTTT
456 TGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCT
* * *
2473708 CTTTTTTCCCTTATCCTCACGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGT
521 CTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGT
* * * * * * *
2473773 GGGATACCCCTTCCATTTATTTCCCTTTCTAAAGTCTACATAAGTTAGTAGCACCC-AAATGCCC
586 GGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCC
* *
2473837 ACACAAGTTGGTGGCAAACCGTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGACGTCAAGC
651 ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
* * * *
2473902 TATAGAAAATTTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAATAAATTTTGAATGTCGTC
716 TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAATGTCGTC
* * * * *
2473967 TTTTTACATGCATTTAGATAAGCATTCTTTTTTTTCCTTCACTGACAAAATGGTGTCTTTTGTCT
781 CTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTT
2474032 TTGC-CTTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCC
846 TTGCGC-TATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCC
* *
2474096 GGGTTAATTTTTTGGTAACCCAAAGCATTACTAGATGGGGGGGTTGAAAGGTATGGGGACGAA
910 GGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAA
*
2474159 TTGGTGGCACCTTCCAGTCCTC-AA-A----G----C-----C--T--------ACATGAGTCGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
* * * * * *
2474199 TGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTGGTGGC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
* * * * * * * *
2474264 AGCTTTCAGTCTTAAAAGAGCCGGACGCCTTTTCTTTTCAAAGCCCTCATGAGTTGGTGGCACCT
131 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
* * * * ** * * ** ** * *
2474329 TTTAG-CCGTCGAAGAGCTGGACGTCTTTT--TCTT---TCAAAGCCCACGCA-AGTTGGTGGCA
196 TTTAGTCC-TCAAAGAGCAGGATGCCTTTTCCTCTTCCCTC-TTGTCCTCAAAGAGCAGGTCGTA
**** * ** ** * ** *
2474387 CCTT--TTAGTCC-TCAAAGAGCAAGACGCTTTTTCTTTTCAAAGCCCA-CACG-A-GTT-GGTG
259 -CTTCATT--TCCTTC--TTTTC----C-C-TTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTT
* * * * ** * * * *
2474445 GCAC-TT-TTTAGTCCTCAAAAAGCA-G--G-ATGGC-TTTTCCTCTTCCCCCTTGTCCTCAAAG
313 CCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAG
* * * * * * * * *
2474503 AGTAAGACGCACTTCATTTCCTTCTTTTCACTT-T-TTCCCTCAAAGAGTAGGACGCACTTT-AT
378 AGCAGGATGCTCTTCATTTCCTTTTTTTCCCTTCTAGT-CCTCAAAGAGCAGGACACA-TTTCAT
* *
2474565 TTT-C-TTCTTTCTTTTGTCCTC-AAAGAGCATGACGTATTTCGTTTTCCTTTTCTC-CTTTGTC
441 TTTCCTTTTTTTC-TTTGTCCTCGAAA-AGCA-G--G-A---CGTGTT-CTTTT-TCACTTTGTC
* * * * * * * *
2474626 GTCAA-AGAGTAGGACGCTCTTCATTTCCCTCTTTTCCCTTCTAGTCCGCAAAGAGC-AGGACGC
495 CTCAAGA-AGCAGGACACT-TTC-CTTCTCT-TTTTTCCTT-T-GTCCTCAAGGAGCGA-GAC-C
* * * ** *
2474689 T-CTTCAGTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGTAGGACACATTTCATTTTCC-TTTTT
552 TATTTCA-TT--TTCTTTT-CCTT-T-GTCCTCAAAAAGTGGGACAC----C-CCTTCCATTTAT
* ** * * *** ** * * * ** **
2474752 TTCTTTGTCTTCGAAAAG-CAGGACGTGTTCTTTTTCACTTCGTCCTCAAGAAGCAGGACACTTT
606 TTC----CCTTCCTAAAGTC-TG-C--ATAAGTTGGCA--AC-ACC-CAAAAAGC-CCACAC-AA
* ** ****** * * * ** * * *
2474816 CTTTTTCTTTTTTCTTTTGTCCTCAACGAG-CGACACCTATTTCATTTTCTTTTCCTTTGTCCTC
657 GTTGGT-GGCAAAC-CTT-T-C-CAA--AGCCTACA-GTA-ACCA---AC---ACC--TAT-CT-
** * ** ** ** * **** ** * ** ** *
2474880 AAAAAATGGGACACCCTTTCCATTTATTTCCCCTCCTAAAGTTTGCATAAGTTGGCAGCACA-CA
703 -AAGGA--GGTCAAGCTTTAGA-AAATCTCAAAACCT--AGTAGGGA-AA---ACCATAAAATCA
* * *** * * * ** * *** *
2474944 AAAAGGCCAAACAAA-TTG-GTGGCAAAGC-TTTCCAAGGCCTACAG-TAACCA-AC--ACCTAT
758 AAAA----AAA-AAATTTGAATGTC-GTCCTTTTAC-ATGCATTTAGCTAACCATTCTTTTTTTT
* *** * **** * * ** **
2475002 -C-T-AAGGAGGTCAA----G-CTTTAGAAAAT-CTCAAAACCT-AGTA--GGGAAA-A-CCACA
816 CCTTCACGGA-CAAAATGGTGTCTTTTGTTTTTGCGCTATTCCTGA-TACTCAGAAACAGCCA-A
** ***** * ** * * * * * * * ** * * * *
2475053 A-A--ATCAAAAAAAAAACATTTGAATGTCGTCC--TTTCA-TATGCATTTA-GCTAAGCATTCC
878 AGAGGGGC-AGCTGTAGACACCT-CATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTAC
******* * *** * **
2475111 T---TTTTTTCCTTCACAGACAAAAT-GGTATC-TT
941 TAGATGGAGGGGTTGA-A-A-GGTATGGGGA-CGAA
* * * * * *** * ******* * * * *
2475142 TTGTTTTTGC-CCTATTCCTAATACTCAGAAACAGCCAAAAAGGGGCAGCTGT-AGACACCTCAT
1 TTG--GTGGCACC--TTCC-AGTCCTC--AAAGAGCGGGACATCTTTTTCTTTCAAACCCCACA-
** * ** ** * ** ******* * *
2475205 TTTGTCCGG-GTTAATTTTTCGGTAACC-C-AAG-GCATTACTAGAT-GGAGGGGTTAAAAGGTG
58 TGAGT-TGGTGGCACCTTTT-AGT--CCTCAAAGAGCAGGAC--G-TCTTTTTCTTTTAAA-G-C
**** * * * ** * * **
2475265 TGGGGACAAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGACATCTTTT-TCTTTCAAAGCCC
114 CCACG-CAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCC
* * *
2475329 ACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCTCACGC
177 ACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATG-C-----C-TTT-----T--C-C
* * * * * *
2475394 AAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCATTTTCTTTTCAAAGCCCACACGAGT
227 ----T-CT-TC-CCTCTT-GTCCTCAAAGAGCAGGTCGTA-CTTCATTT---------C-C---T
**** * * * ** * *
2475459 TGCTGGGACTTTTTAGTCCTCAAAGAGCAGGATGC-C----TTTTCCTCTTCCCTCTTGTCCTCA
270 T-CTTTTCCCTTTT-CTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTCTT-TCTTTTGTCCTCA
* * * * * ** * *
2475519 AAGAGCAGGTCGTACTTC-ATTTCCTTCTTTTCCCTTT-TCTCTTCAAAGAGCAGGGCGCACTTT
332 AAGAGCAGGACGCATTTCGTTTTCCTT-TTCT-CCTTTGTC-CTT-AAAGAGCAGGATGCTCTTC
* * * * **
2475582 ATTTTCC--TTTTT--CTT-TTGCCCTCAAAGAGTAGGACACATTTCGTTTTCC-TTTTAGCTTT
393 A-TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTC-TT
* * *
2475641 TGTCCT-TAAAGAGCAGGATGCGCTTCATTTCCTTTTTTTTCCCTTCTAGTCCTCAA-AGAGCAG
456 TGTCCTCGAAA-AGCAGGA--CG--T--GTT-C---TTTTTCACTT-T-GTCCTCAAGA-AGCAG
* * * * *
2475704 GACACATTTCGTTTTCCTTTTTT-CTTTGTCCTC--GGAAAGCAAGACGT-GTTC----T-TTTT
507 GACAC-TTTCCTTCT-CTTTTTTCCTTTGTCCTCAAGG--AGCGAGACCTATTTCATTTTCTTTT
* ** * * *
2475760 CACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTC-TTT-TTTCCTTTGTCCTCAAGGAG-CGA
568 C-CTTTGTCCTCAAAAAGTGGGACAC--CCCTTC-CATTTATTTCC-CT-TCCT-AA--AGTC-T
* ** ** * * * **
2475822 GACCTATTTCA-TTTTCTTTTCCTTTGACCTCAAAAAGTGGGACGCCCCTTCCATTTATTTCCCT
623 G--C-A--TAAGTTGGC---AAC----ACC-CAAAAA----G-C-CCAC--ACA---AGTT-GGT
** *** *
2475886 TCCTAAAGTCTACATAAGTTGGCAACACCCAAAAAGCCTACACAAGTTGGTGGCAA-ACCTTTCC
663 GGC-AAA--C--C-T---TT--------CC--AAAGCCT--AC-AG-T--AACCAACACCTAT-C
* * * *
2475950 AAAGCCTACAGTAACCAACACCTATCTAAGTAGGTCAAGCTTTATAAAATCTCAAAACCTAGTAG
702 TAAG--GA-GGT---C-A-AGCT-T-T-AG-A----AA-----AT-----CTCAAAACCTAGTAG
*
2476015 GGAAAACCATAAAATCAAAAAAAAAAAATTTGTATGTCGTCCTTTTACATGCATTTAGCTAACCA
741 GGAAAACCATAAAATC-AAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCA
* * *
2476080 TTCTTTTTTTTCCTTCATGGACAAAATGGTGTCTTTTGGTCTTGCGCTATTCCTGATACTCAGAA
805 TTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCGCTATTCCTGATACTCAGAA
* * *
2476145 ACAGCGAAAGAGGGGCAGCTGTAGACACCTCATTTTGTTCGGGTTAATTTTTCAGTAACCCAAAG
870 ACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAG
*
2476210 CATTACTAGATGGAGGGGTTGCAAGGTATGGGGACGAA
935 CATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAA
* *
2476248 TTGGTGGCACCTTCCAGTCCTCAAAGGGCGGGACATCTTTTTCTTTCAAACCCCACAAGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
2476313 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
*
2476378 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAGACGAGTTGGTGGCACTT
131 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
*
2476443 TTTAGTCCTCAAAAAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
* *
2476508 TCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTG
261 TCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTG
* *
2476573 TCCTCAAAGAGCCGGACGCATTTCGTTTTCCTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCT
326 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATGCTCT
*
2476638 TCATTTCCTTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTTATTTTCCTTTTTTTCT
391 TCATTTCC-TTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
*
2476703 TTGTCCTCAAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
455 TTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
*
2476768 TCTTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAA
520 TC-TTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAA
* *
2476833 GTGGGACACCCTTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACGCCCAAAAAGC
584 GTGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGC
*
2476898 CCACACAAGTTGGTGGCAAACCTTTCCAAAGCATACAGTAACCAACACCTATCTAAGGAGGTCAA
649 CCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAA
*
2476963 GCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAAAATTTGTATG
714 GCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATC---AAAAAAAAAAATTTGAATG
2477028 TCGTCCTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
776 TCGTCCTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
* *
2477093 TTTTTTTGCGCTATTCCTGATACTCAGAAACAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTT
841 TGTTTTTGCGCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTT
* *
2477158 GTCCGGGTTAATTTTTCGGTAACCCAAAGTATTACTAGATGGAGGGGTTGCAAGGTATGGGGACG
906 GTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACG
2477223 AA
971 AA
2477225 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
* *
2477290 TGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTACTGTC
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
* *
2477355 ACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
131 ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
* * *
2477420 TTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTCTTCCCTCTGGTCCTCAAAGAGCAAGTCGTACT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
* * *
2477485 TCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGAAGGGCGCACTTTATTTTCCTCTTTCTTTTG
261 TCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTG
* * * *
2477550 TCCTCAAAGAGCAAGACGCATTTTGTTTT-CTGTTTCTCCTTTGTCCTTGAAGAGCTGGATGCTC
326 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCT-TTTCTCCTTTGTCCTTAAAGAGCAGGATGCTC
*
2477614 TTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCATTTTCCTTTTTTTCT
390 TTCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCT
* *
2477679 TTGTCTTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTT
455 TTGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
* * *
2477744 TCATTTTTCCTTTGTCCTTAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAATG
520 TCTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAG
* * *
2477809 TGGGACACCCCTTACATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAACC
585 TGGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCC
*
2477874 CACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCAAG
650 CACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAG
* * * * *
2477939 CATTAGAAAATCTCAAAACCTAGCAGGGAAAACCATAAAATCAAAAAAGAAATTTTGAATGTTGT
715 CTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAATGTCGT
** *
2478004 TTTTTTACATGCATTTAGCTAAGCATTCTTTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTG
780 CCTTTTACATGCATTTAGCTAACCATTC--TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTG
* * * *
2478069 TCTTTGCCCTATTCCTGATACTTAGAAACAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGT
843 TTTTTGCGCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGT
* * ** * * * *
2478134 CTGGGCTAATTTTTTAGAAACCCAAAGCATTACTAGATCGAGGGGTCGAAAGGTATGGCGACGAA
908 CCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAA
* * * *
2478199 TTGGTGGCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTTTTTCAAATCCCACACGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
* * * * ** * *
2478264 TGGCACCTTTTAGTGCTTAAAGAG-GGGACGTCTTTTTCTTTTAACGCGTAGGCAAGTTGGTGGT
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGT-GT
* * * * * *
2478328 -AGCTTTTAGTCCTAAAAGAGCTGGACGCCTTTTCTTTGCAAAGCCCTCACGAGTTGGTGGCACC
130 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACT
2478392 TTTTAGTCCTCAAAGAGC
195 TTTTAGTCCTCAAAGAGC
2478410 TGGACGTCTT
Statistics
Matches: 4966, Mismatches: 831, Indels: 793
0.75 0.13 0.12
Matches are distributed among these distances:
935 9 0.00
936 15 0.00
937 24 0.00
938 51 0.01
939 3 0.00
940 4 0.00
941 11 0.00
942 12 0.00
943 23 0.00
944 30 0.01
945 112 0.02
946 51 0.01
947 9 0.00
948 4 0.00
949 28 0.01
950 4 0.00
952 7 0.00
953 5 0.00
954 1 0.00
955 18 0.00
959 8 0.00
960 5 0.00
962 1 0.00
963 7 0.00
964 2 0.00
966 4 0.00
968 2 0.00
969 5 0.00
970 328 0.07
971 240 0.05
972 686 0.14
973 378 0.08
974 576 0.12
975 254 0.05
976 121 0.02
977 587 0.12
978 3 0.00
979 4 0.00
980 6 0.00
981 6 0.00
982 1 0.00
983 7 0.00
984 16 0.00
985 9 0.00
986 8 0.00
987 13 0.00
988 11 0.00
989 6 0.00
990 10 0.00
991 3 0.00
992 11 0.00
993 10 0.00
994 9 0.00
995 9 0.00
997 8 0.00
998 7 0.00
999 2 0.00
1000 8 0.00
1001 11 0.00
1002 6 0.00
1003 13 0.00
1004 14 0.00
1005 4 0.00
1006 1 0.00
1007 6 0.00
1009 2 0.00
1013 2 0.00
1014 14 0.00
1015 8 0.00
1016 6 0.00
1017 5 0.00
1018 3 0.00
1019 84 0.02
1020 3 0.00
1021 1 0.00
1023 1 0.00
1024 485 0.10
1025 240 0.05
1026 100 0.02
1027 136 0.03
1028 73 0.01
1029 108 0.02
1030 342 0.07
1031 239 0.05
1032 183 0.04
1033 169 0.03
1034 399 0.08
1035 118 0.02
1036 54 0.01
1037 59 0.01
1038 45 0.01
1039 46 0.01
1040 25 0.01
1041 14 0.00
1042 6 0.00
1043 58 0.01
1044 17 0.00
1045 93 0.02
1046 112 0.02
1047 84 0.02
1048 58 0.01
1049 109 0.02
1050 67 0.01
1051 137 0.03
1052 62 0.01
1053 152 0.03
1054 334 0.07
1055 121 0.02
1056 86 0.02
1057 51 0.01
1058 49 0.01
1059 94 0.02
1060 65 0.01
1061 93 0.02
1062 106 0.02
1063 71 0.01
1064 47 0.01
1065 47 0.01
1066 33 0.01
1067 12 0.00
1068 11 0.00
1069 29 0.01
1070 33 0.01
1071 82 0.02
1072 108 0.02
1073 165 0.03
1074 381 0.08
1075 58 0.01
1076 68 0.01
1077 100 0.02
1078 83 0.02
1079 61 0.01
1080 171 0.03
1081 70 0.01
1082 63 0.01
1083 44 0.01
1084 54 0.01
1085 93 0.02
1086 92 0.02
1087 13 0.00
1088 20 0.00
1089 52 0.01
1090 44 0.01
1091 66 0.01
1092 46 0.01
1093 45 0.01
1094 9 0.00
1095 99 0.02
1096 107 0.02
1097 35 0.01
1098 65 0.01
1099 27 0.01
1100 116 0.02
1101 74 0.01
1102 146 0.03
1103 42 0.01
1104 14 0.00
1105 20 0.00
1106 35 0.01
1107 18 0.00
1108 23 0.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (972 bp):
TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTC
ACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACT
TCATTTCCTTCTTTTCCCTTTTCTCTTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTG
TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGATGCTCT
TCATTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTT
TGTCCTCGAAAAGCAGGACGTGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCT
CTTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGT
GGGACACCCCTTCCATTTATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCC
ACACAAGTTGGTGGCAAACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGC
TTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAATGTCGTC
CTTTTACATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTT
TTGCGCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCG
GGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAA
Found at i:2473386 original size:60 final size:60
Alignment explanation
Indices: 2473184--2473412 Score: 282
Period size: 61 Copynumber: 3.8 Consensus size: 60
2473174 AGGTATGGGG
* * * * * *
2473184 ACGAATTGGTGGCA-CTTTCCT-GTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTT--TAGTCCTCAAAGAGCAGGAC-GCCTTTTCTTTTAAAGCCCAC
* *
2473245 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTAAAGCCCAC
* * * *
2473306 GCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCAC
* *
2473366 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2473413 CTCTTCCCTC
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
60 61 0.41
61 82 0.56
62 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCAC
Found at i:2473506 original size:45 final size:45
Alignment explanation
Indices: 2473408--2473506 Score: 105
Period size: 45 Copynumber: 2.2 Consensus size: 45
2473398 GCAGGATGCC
* * ** *
2473408 TTTTCCTC--TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTTCCCTCTTATCCACAAAGAGCAGGGAGCACTTCA
* *
2473451 -TTTCCTTCTTTTCCCTTTTATCCACAAAGAGCAGGGAGCACTTTA
1 TTTTCC-TCTTTTCCCTCTTATCCACAAAGAGCAGGGAGCACTTCA
2473496 TTTTCCTCTTT
1 TTTTCCTCTTT
2473507 CTTTTGTCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
42 5 0.11
43 2 0.04
45 33 0.73
46 5 0.11
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.41
Consensus pattern (45 bp):
TTTTCCTCTTTTCCCTCTTATCCACAAAGAGCAGGGAGCACTTCA
Found at i:2473524 original size:42 final size:42
Alignment explanation
Indices: 2473408--2473570 Score: 118
Period size: 42 Copynumber: 3.8 Consensus size: 42
2473398 GCAGGATGCC
* * ** * *
2473408 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTT-TCTTTTGTCCTCAAAGAGCAGGGAGCACTTTA
* *
2473451 -TTTCCTTCTTTTCCCTTTTATCCACAAAGAGCAGGGAGCACTTTA
1 TTTTCC-TC-TTT--CTTTTGTCCTCAAAGAGCAGGGAGCACTTTA
*
2473496 TTTTCCTCTTTCTTTTGTCCTCAAAGAGCA-TGACGCA-TTTCA
1 TTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGGA-GCACTTT-A
* *
2473538 TTTTCCT-TTTCTCCTTTGTGCTTAAAGAGCAGG
1 TTTTCCTCTTTCT--TTTGTCCTCAAAGAGCAGG
2473571 ATGCTCTTCG
Statistics
Matches: 96, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
41 10 0.10
42 33 0.34
43 17 0.18
44 5 0.05
45 26 0.27
46 5 0.05
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.40
Consensus pattern (42 bp):
TTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGGAGCACTTTA
Found at i:2473637 original size:46 final size:43
Alignment explanation
Indices: 2473423--2473658 Score: 189
Period size: 43 Copynumber: 5.4 Consensus size: 43
2473413 CTCTTCCCTC
* * *
2473423 TTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTT-TTTT-CC-T
* * * *
2473468 TTATCCACAAAGAGCAGGGA-GCACTTT-ATTTTCC-TCTTTCTT
1 TTGTCCTCAAAGAGCA-GGACGCA-TTTCATTTTCCTTTTTTCCT
* *
2473510 TTGTCCTCAAAGAGCATGACGCATTTCATTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTCCT
* * * *
2473553 TTGTGCTTAAAGAGCAGGATGC-TCTTC-GTTTCCTTTTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTTCC-TTTTTT-CCT
* *
2473597 TCTAGTCCTCAAAGAGCAGGACCCATTTCATTTTCCTTTTTTTCT
1 T-T-GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTCCT
2473642 TTGTCCTCGAAA-AGCAG
1 TTGTCCTC-AAAGAGCAG
2473659 AACGTGTTCT
Statistics
Matches: 152, Mismatches: 25, Indels: 30
0.73 0.12 0.14
Matches are distributed among these distances:
41 5 0.03
42 31 0.20
43 43 0.28
44 11 0.07
45 22 0.14
46 34 0.22
47 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTCCT
Found at i:2473708 original size:35 final size:35
Alignment explanation
Indices: 2473640--2473708 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
2473630 TCCTTTTTTT
*
2473640 CTTTGTCCTCGAAAAGCAGAACGTGTTCTTTTTCA
1 CTTTGTCCTCGAAAAGCAGAACGTGTTCCTTTTCA
2473675 CTTTGTCCTC-AAGAAGCAAGACAC-T-TTCCTTTTC
1 CTTTGTCCTCGAA-AAGC-AGA-ACGTGTTCCTTTTC
2473709 TTTTTTCCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
34 2 0.07
35 22 0.73
36 4 0.13
37 2 0.07
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.36
Consensus pattern (35 bp):
CTTTGTCCTCGAAAAGCAGAACGTGTTCCTTTTCA
Found at i:2474479 original size:122 final size:122
Alignment explanation
Indices: 2474179--2474471 Score: 390
Period size: 122 Copynumber: 2.4 Consensus size: 122
2474169 CTTCCAGTCC
* * * *
2474179 TCAAAGCCTACATGAGTCGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTTTAA
1 TCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAA
* * * * * **
2474244 CGCGCAGGCAAGTTGGTGGCAGCTTTCAGTCTTAAAAGAGCCGGACGCCTTTTCTTT
66 AGCCCACGCAAGTTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTT
* * *
2474301 TCAAAGCCCTCATGAGTTGGTGGCACCTTTTAG-CCGTCGAAGAGCTGGACGTCTTTTTCTTTCA
1 TCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCC-TCAAAGAGCAGGACGTCTTTTTCTTTCA
* * *
2474365 AAGCCCACGCAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGCTTTTTCTTT
65 AAGCCCACGCAAGTTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTT
* * *
2474423 TCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAAAGCAGGA
1 TCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2474472 TGGCTTTTCC
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
121 1 0.01
122 143 0.98
123 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.29
Consensus pattern (122 bp):
TCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAA
AGCCCACGCAAGTTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTT
Found at i:2474480 original size:61 final size:61
Alignment explanation
Indices: 2474179--2474480 Score: 297
Period size: 61 Copynumber: 5.0 Consensus size: 61
2474169 CTTCCAGTCC
* * * * *
2474179 TCAAAGCCTACATGAGTCGGTGGCACCTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTT
1 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGC-TTTTCTTT
* * ** * * * * * * *
2474241 T-AACGCGCAGGCAAGTTGGTGGCAGCTTTCAGTCTTAAAAGAGCCGGACGCCTTTTCTTT
1 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTTCTTT
* * * * *
2474301 TCAAAGCCCTCATGAGTTGGTGGCACCTTTTAG-CCGTCGAAGAGCTGGACGTCTTTT-TCTT
1 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCC-TCAAAGAGCAGGACGGCTTTTCT-TT
* * *
2474362 TCAAAGCCCACGCAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGAC-GCTTTTTCTTT
1 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGC-TTTTCTTT
* * *
2474423 TCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAAAGCAGGATGGCTTTTC
1 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTTC
2474481 CTCTTCCCCC
Statistics
Matches: 190, Mismatches: 43, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
60 12 0.06
61 172 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (61 bp):
TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGGCTTTTCTTT
Found at i:2474545 original size:45 final size:43
Alignment explanation
Indices: 2474491--2474760 Score: 240
Period size: 46 Copynumber: 6.1 Consensus size: 43
2474481 CTCTTCCCCC
*
2474491 TTGTCCTCAAAGAGTAAGACGCACTTCATTTCCTTCTTTTCACT
1 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTC-CT
* * * *
2474535 TTTTCCCTCAAAGAGTAGGACGCACTTTATTTTCTTC-TTTCTT
1 TTGT-CCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
* * * * * *
2474578 TTGTCCTCAAAGAGCATGACGTATTTCGTTTTCCTT-TTCTCCT
1 TTGTCCTCAAAGAGTAGGACGCACTTC-ATTTCCTTCTTTTCCT
* * *
2474621 TTGTCGTCAAAGAGTAGGACGCTCTTCATTTCCCTCTTTTCCCT
1 TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTT-CCT
* * * *
2474665 TCTAGTCCGCAAAGAGCAGGACGCTCTTCAGTTCCTTCTTTTCCCT
1 T-T-GTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTT-CCT
* * *
2474711 TCTAGTCCTCAAAGAGTAGGACACATTTCATTTTCCTT-TTTTTCT
1 T-T-GTCCTCAAAGAGTAGGACGCACTTCA-TTTCCTTCTTTTCCT
2474756 TTGTC
1 TTGTC
2474761 TTCGAAAAGC
Statistics
Matches: 182, Mismatches: 36, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
42 24 0.13
43 41 0.23
44 12 0.07
45 33 0.18
46 66 0.36
47 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCT
Found at i:2475375 original size:61 final size:61
Alignment explanation
Indices: 2475275--2475490 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
2475265 TGGGGACAAA
** * * * *
2475275 TTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
2475336 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCTCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * *
2475397 TTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACG-CATTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* * *
2475458 TTGCTGGGACTTTTTAGTCCTCAAAGAGCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2475491 TGCCTTTTCC
Statistics
Matches: 132, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
60 6 0.05
61 126 0.95
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2475725 original size:47 final size:46
Alignment explanation
Indices: 2475601--2475726 Score: 116
Period size: 47 Copynumber: 2.8 Consensus size: 46
2475591 TTTCTTTTGC
* * *
2475601 CCTCAAAGAGTAGGACACATTTCGTTTTCC---TTTTAGCTTTTGT
1 CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTACCTTTAGT
* ** ** * *
2475644 CCTTAAAGAGCAGGATGCGCTTC-ATTTCCTTTTTTTTCCCTTCTAGT
1 CCTCAAAGAGCAGGACACATTTCGTTTTCC-TTTTTTTACCTT-TAGT
2475691 CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTT
1 CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTT
2475727 CTTTGTCCTC
Statistics
Matches: 61, Mismatches: 16, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
42 5 0.08
43 17 0.28
46 7 0.11
47 27 0.44
48 5 0.08
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTTACCTTTAGT
Found at i:2475735 original size:42 final size:43
Alignment explanation
Indices: 2475510--2475736 Score: 149
Period size: 42 Copynumber: 5.2 Consensus size: 43
2475500 CTCTTCCCTC
* ** * *
2475510 TTGTCCTCAAAGAGCAGGTCGTACTTC-ATTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTT-TTTT--CTT
* * * * *
2475555 TTCTCTTCAAAGAGCAGGGCGCACTTT-ATTTTCC-TTTTTCTT
1 TTGTCCTCAAAGAGCAGGACACA-TTTCGTTTTCCTTTTTTCTT
* * **
2475597 TTGCCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTAGCTT
1 TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCTT
* ** ** *
2475640 TTGTCCTTAAAGAGCAGGATGCGCTTC-ATTTCCTTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCC--TTTTTT--CTT
*
2475686 CTAGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTC-T
1 -TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCTT
2475729 TTGTCCTC
1 TTGTCCTC
2475737 GGAAAGCAAG
Statistics
Matches: 139, Mismatches: 33, Indels: 23
0.71 0.17 0.12
Matches are distributed among these distances:
41 3 0.02
42 38 0.27
43 27 0.19
44 9 0.06
45 20 0.14
46 16 0.12
47 21 0.15
48 5 0.04
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.43
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCTT
Found at i:2475840 original size:42 final size:40
Alignment explanation
Indices: 2475753--2475854 Score: 102
Period size: 41 Copynumber: 2.5 Consensus size: 40
2475743 CAAGACGTGT
*
2475753 TCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTC
1 TCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATTC
* *
2475794 TCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTT
1 TC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATTC
*
2475836 TC-TTTTCCTTTGACCTCAA
1 TCTTTTTCCTTTGTCCTCAA
2475855 AAAGTGGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
40 18 0.34
41 21 0.40
42 14 0.26
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.43
Consensus pattern (40 bp):
TCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATTC
Found at i:2476348 original size:61 final size:61
Alignment explanation
Indices: 2476248--2476463 Score: 265
Period size: 61 Copynumber: 3.5 Consensus size: 61
2476238 TGGGGACGAA
** * * * *
2476248 TTGGTGGCACCTTCCAGTCCTCAAAGGGCGGGACATCTTTTTCTTTCAAACCCCACAAGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACAAGAG
* *
2476309 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCA-AG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC-AAGAG
* * * * *
2476370 TTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAGACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACAAGAG
* *
2476431 TTGGTGGCACTTTTTAGTCCTCAAAAAGCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2476464 TGCCTTTTCC
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
60 6 0.05
61 126 0.95
62 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACAAGAG
Found at i:2476625 original size:85 final size:87
Alignment explanation
Indices: 2476468--2476630 Score: 213
Period size: 87 Copynumber: 1.9 Consensus size: 87
2476458 GCAGGATGCC
* * *
2476468 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTC
1 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGACGCACTTCATTT-CTCCTTTTCCCTTTTGTC
2476533 CTCAAAGAGCAGGGCGCACTTTA
65 CTCAAAGAGCAGGGCGCACTTTA
* * * * * *
2476556 TTTTCCTCTT-TCTTTTGTCCTCAAAGAGCCGGACGCATTTCGTTT-TCCTTTTCTCTTTTGTCC
1 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCTCCTTTTCCCTTTTGTCC
*
2476619 TTAAAGAGCAGG
66 TCAAAGAGCAGG
2476631 ATGCTCTTCA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 27 0.42
87 28 0.43
88 10 0.15
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.41
Consensus pattern (87 bp):
TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCTCCTTTTCCCTTTTGTCC
TCAAAGAGCAGGGCGCACTTTA
Found at i:2476626 original size:43 final size:43
Alignment explanation
Indices: 2476468--2476723 Score: 205
Period size: 43 Copynumber: 5.8 Consensus size: 43
2476458 GCAGGATGCC
* * * * * *
2476468 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTA
* * *
2476511 TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGGCGCACTTTA
1 TTT--TCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTA
* * *
2476556 TTTTCCTCTT-TCTTTTGTCCTCAAAGAGCCGGACGCA-TTTCG
1 TTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTT-A
* * * *
2476598 TTTTCCTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCA
1 TTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTA
* * * *
2476641 -TTTCCTTTTTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTTA
1 TTTTCC----TTTTCTCTT-TTGTCCTCAAAGAGCAGGACGCACTTTA
* *
2476688 TTTTCCTTTT-TTTCTTTGTCCTCAAAAAGCAGGACG
1 TTTTCCTTTTCTCT-TTTGTCCTCAAAGAGCAGGACG
2476724 TGTTCTTTTT
Statistics
Matches: 169, Mismatches: 32, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.02
42 38 0.22
43 50 0.30
44 7 0.04
45 37 0.22
46 8 0.05
47 21 0.12
48 5 0.03
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (43 bp):
TTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCACTTTA
Found at i:2477325 original size:61 final size:60
Alignment explanation
Indices: 2477220--2477440 Score: 253
Period size: 61 Copynumber: 3.6 Consensus size: 60
2477210 AGGTATGGGG
* ** * *
2477220 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCAC
* * *
2477281 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-TCTTTTTCTTTCAAAGCCCAC
* * ** * * * *
2477342 GCAAGTTACTGTCACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTCTTTTTC-TTTCAAAGCCCAC
* *
2477403 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2477441 TGCCTTTTCC
Statistics
Matches: 133, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
60 6 0.05
61 127 0.95
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACTCTTTTTCTTTCAAAGCCCAC
Found at i:2477341 original size:977 final size:974
Alignment explanation
Indices: 2474720--2484419 Score: 6600
Period size: 973 Copynumber: 9.8 Consensus size: 974
2474710 TTCTAGTCCT
* *
2474720 CAAAGAGTAGGACACATTTCATTTTCCTTTTTTTCTTTGTCTTCGAAAAGCAGGACGTGTTCTTT
1 CAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTT
* * * * * *
2474785 TTCACTTCGTCCTCAAGAAGCAGGACACTTTCTTTTTCTTTTTTCTTTTGTCCTCAACGAGCGAC
66 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAG
* * * *
2474850 ACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAATGGGACACCCTTTCCATTTATTTCCCCTC
131 ACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTC
* * * * * * * *
2474915 CTAAAGTTTGCATAAGTTGGCAGCACACAAAAAGGCCAAACAAATTGGTGGCAAAGCTTTCCAAG
196 CTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAA
2474980 GCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGA
261 GCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGA
* * * * *
2475045 AAACCACAAAATCAAAAAAAAAACATTTGAATGTCGTCCTTTCATATGCATTTAGCTAAGCATTC
326 AAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCATTC
* * * *
2475110 CTTTTTTTCCTTCACAGACAAAATGGTATCTTTTGTTTTTGCCCTATTCCTAATACTCAGAAACA
391 TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACA
* *
2475175 GCCAAAA-AGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAGGCA
456 G-CAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAGCA
* * * *
2475239 TTACTAGATGGAGGGGTTAAAAGGTGTGGGGACAAATTGGTGGCACCTTCCAGTCCTTAAAGAGC
520 TTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGC
*
2475304 GGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
585 GGGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
* *
2475369 CGTCTTTTTCTTTTAAAGCTCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCA
650 CGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCC
* *
2475434 TTTTCTTTTCAAAGCCCACACGAGTTGCTGGGACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
715 TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
2475499 CCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTCTCTTCA
780 CCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCA
* * * *
2475564 AAGAGCAGGGCGCACTTTATTTTCCTTTTTCTTTTGCCCTCAAAGAGTAGGACACATTTCGTTTT
845 AAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTT
** *
2475629 CCTTTTAGCTTTTGTCCTTAAAGAGCAGGATGCGCTTCATTTCCTTTTTTTTCCCTTCTAGTCCT
910 CCTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGTCCT
* * *
2475694 CAAAGAGCAGGACACATTTCGTTTTCC-TTTTTTCTTTGTCCTCGGAAAGCAAGACGTGTTCTTT
1 CAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTT
2475758 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAG
66 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAG
*
2475823 ACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACGCCCCTTCCATTTATTTCCCTTC
131 ACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTC
* *
2475888 CTAAAGTCTACATAAGTTGGCAACACCCAAAAAGCCTACACAAGTTGGTGGCAAACCTTTCCAAA
196 CTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAA
* *
2475953 GCCTACAGTAACCAACACCTATCTAAGTAGGTCAAGCTTTATAAAATCTCAAAACCTAGTAGGGA
261 GCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGA
*
2476018 AAACCATAAAATCAAAAAAAAAAAATTTGTATGTCGTCCTTTTACATGCATTTAGCTAACCATTC
326 AAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCATTC
* * * *
2476083 TTTTTTTTCCTTCATGGACAAAATGGTGTCTTTTGGTCTTGCGCTATTCCTGATACTCAGAAACA
391 TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACA
* *
2476148 GCGAAAGAGGGGCAGCTGTAGACACCTCATTTTGTTCGGGTTAATTTTTCAGTAACCCAAAGCAT
456 GCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAGCAT
* *
2476213 TACTAGATGGAGGGGTTGCAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGGGCG
521 TACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCG
*
2476278 GGACATCTTTTTCTTTCAAACCCCACAAGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC
586 GGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC
2476343 GTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCT
651 GTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCT
* *
2476408 TTTCTTTTCAAAGCCCAGACGAGTTGGTGGCACTTTTTAGTCCTCAAAAAGCAGGATGCCTTTTC
716 TTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC
2476473 CTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAA
781 CTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAA
*
2476538 AGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCCGGACGCATTTCGTTTTC
846 AGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTC
2476603 CTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGTCCT
911 CTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGTCCT
* *
2476667 CAAAGAGCAGGACACATTTTATTTTCCTTTTTTTCTTTGTCCTCAAAAAGCAGGACGTGTTCTTT
1 CAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTT
2476732 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTTCCTTTGTCCTCAAGGAGCGA
66 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTC-TTTTTTCCTTTGTCCTCAAGGAGCGA
*
2476797 GACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCTTTCCATTTATTTCCCTT
130 GACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTT
*
2476862 CCTAAAGTCTGCATAAGTTGGCAACGCCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAA
195 CCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAA
*
2476927 AGCATACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGG
260 AGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGG
*
2476992 AAAACCATAAAATCAAAAAAAAAAAAAATTTGTATGTCGTCCTTTTACATGCATTTAGCTAACCA
325 AAAACCATAAAATC--AAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCA
* *
2477057 TTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTTTTTTTGCGCTATTCCTGATACTCAGAA
388 TTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAA
*
2477122 ACAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCGGTAACCCAAAG
453 ACAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAG
* *
2477187 TATTACTAGATGGAGGGGTTGCAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGA
518 CATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGA
*
2477252 GCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAA
583 GCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAG
* * *
2477317 GACGTCTTTTTCTTTTAAAGCCCACGCAAGTTACTGTCACCTTTTAGTCCTCAAAGAGTAGGACA
648 GACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACG
*
2477382 CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGATGCCTT
713 CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTT
* *
2477447 TTCCTCTTCCCTCTGGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCT
778 TTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCT
* * *
2477512 CAAAGAGAAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAAGACGCATTTTGTT
843 CAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTT
* * *
2477577 TT-CTGTTTCTCCTTTGTCCTTGAAGAGCTGGATGCTCTTCATTTCC-TTTTTTTCCCTTCTAGT
908 TTCCT-TTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGT
2477640 CCT
972 CCT
* *
2477643 CAAAGAGCAAGACACATTTCATTTTCCTTTTTTTCTTTGTCTTCGAAAAGCAGGACGTGTTCTTT
1 CAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTT
* * *
2477708 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCATTTTTCCTTTGTCCTTAAGGAGCGAG
66 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAG
* * *
2477773 ACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAATGTGGGACACCCCTTACATTTATTTCCCTTC
131 ACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTC
* *
2477838 CTAAAGTCTGCATAAGTTGGCAGCACCCAAAAAACCCACACAAGTTGGTGGCAAACCTTTCCAAA
196 CTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAA
* * *
2477903 GCCTAAAGTAACCAACACCTATCTAAGGAGGTCAAGCATTAGAAAATCTCAAAACCTAGCAGGGA
261 GCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGA
* * * ** *
2477968 AAACCATAAAATC-AAAAAAGAAATTTTGAATGTTGTTTTTTTACATGCATTTAGCTAAGCATTC
326 AAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCATTC
* *
2478032 TTTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATACTTAGAAA
391 --TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAA
* * * * * *
2478097 CAGCCAAAGAGGGGCAACTGTAGACACCTCATTTTGTCTGGGCTAATTTTTTAGAAACCCAAAGC
454 CAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAGC
* * * *
2478162 ATTACTAGATCGAGGGGTCGAAAGGTATGGCGACGAATTGGTGGCACCTTCCAATCCTCAAAGAG
519 ATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAG
* * * * * *
2478227 CGGGACATCTTTTTTTTTCAAATCCCACACGAGTTGGTGGCACCTTTTAGTGCTTAAAGAG-GGG
584 CGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGG
* ** * * * * *
2478291 ACGTCTTTTTCTTTTAACGCGTAGGCAAGTTGGTGGT-AGCTTTTAGTCCTAAAAGAGCTGGACG
649 ACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGT-GTCACCTTTTAGTCCTCAAAGAGCAGGACG
* * * * * *
2478355 CCTTTTCTTTGCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTT
713 CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTT
** * * ** ** * * * * ****
2478420 TT--TCTT---TCAAAGCCCACGCA-AGTTGGTGGCACCTTTCA-GTCCTCAAAGAGCAAGACGC
778 TTCCTCTTCCCTC-TTGTCCTCAAAGAGCAGGTCGTA-C-TTCATTTCCT------TCTTTTC-C
* ** * * * * *** **
2478478 CTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTT-TTAGTCCCCAAAGAGCAGGACGCCTT
833 CTTTTGTCCTCAAAG---A-GC-AG--GG-CGCACTTTATT--T-TCC-----TC-TTTC-TTTT
* * * * * * * *
2478542 GTCGTCAAAGAGTAGGACGCACTTC-ATTTCCTTCTTTTCCTTTTTGCCCTCAAAGAGCAGGACG
880 GTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT-TTCT-C-TTTTGTCCTTAAAGAGCAGGATG
* * *
2478606 CACTTTATTTTCC---TTTTT--CTT-TTGTCCT
942 CTCTTCA-TTTCCTTTTTTTTCCCTTCTAGTCCT
* * * *
2478634 CAAAGAGCAGGACGCATTT-AGTTTTCCTTTTCTCCTTTGTCCTC-AAAGAGTAGGACGCTCTTA
1 CAAAGAGCAGGACACATTTCA-TTTTCCTTTTTTTCTTTGTCCTCGAAA-AGCAGGACG----T-
* * * * *
2478697 ATTTCCTTCTTTTCCCTTCTAGCCCTC-AGAGAGCAGGACGCTCTTCATT-TCCTTCTTTTCCCT
59 -GTT-C-T-TTTTCACTT-T-GTCCTCAAGA-AGCAGGACACT-TTCCTTCT-CTT-TTTT-CCT
* * * * **
2478760 TCTAGTCCTCAAAGAGC-AGGACAC-ATTTCATTTTCCTTTT-TTTTGTCCTCGAAAAGCAGGAC
113 T-T-GTCCTCAAGGAGCGA-GAC-CTATTTCATTTT-CTTTTCCTTTGACCTCAAAAAGTGGGAC
** * * * ***** * * * *** ** ****
2478822 GTACTCTTTTTCACTT-TGTCCTCAAGAAACAGGACGCTTTCCTTTTCTTTTTTCCTTTGTCCTC
173 --AC-CCCTTCCATTTATTTCC-CTTCCTA-A--A-G-TCTGC--AT-AAGTTGGC-AACACC-C
** * * * ** * *** ** *** *
2478886 AAGGAG-CGAGACCTA-TT--T--CATTTTCTTTTCCTTTGTCCT-CAAAAAGTGGGACACCCAT
224 AAAAAGCCCACA-CAAGTTGGTGGCA--AACCTTTCCAAAG-CCTACAGTAA--CCAACACCTA-
* *** ** ** * * * * * * * * * **
2478944 TCCATTTATTTC-CCCTCCT--AAAGTTTGC-ATA---AGTTGGCAGCACCCA-AAAAGC---CC
282 TCTAAGGAGGTCAAGCT-TTAGAAAATCT-CAAAACCTAGTAGGGA-AAACCATAAAATCAAAAA
* * * * **** * * * ** * *** * *
2478998 ACACAAA-TTG-GTGGCAAAGTTTTCCAAAGCCTACAG-TAACCA-AC--ACCTAT-C-T-AAGG
344 AAAAAAATTTGAATGTCGTCCTTTTAC-ATGCATTTAGCTAACCATTCTTTTTTTTCCTTCACGG
*** * **** * * ** ** * *
2479054 AGGTCAA----G-CTTTAGAAAAT-CTCAAAACCT-AGTA--GGGAAA-ACCATAAA-A---TCA
408 A-CAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGA-TACTCAGAAACAGCA-AAAGAGGGGCA
**** * * ** * * * * * * *
2479105 -AAAAAAAAATTTGA--ATGT-C--G-TCATTTTACATGCATTTA-GCTAAGCATT-CT---T--
470 GCTGTAGACACCTCATTTTGTCCGGGTTAATTTT---T-CAGTAACCCAAAGCATTACTAGATGG
***** ** *** * ** * *
2479156 TTTTCTTTCAA---A-GCCCACGCAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGAC-GCC
531 AGGGGTTGAAAGGTATGGGGACG-AA-TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCT
* * * * ** * * **
2479216 TTTTCTTTTCCAAGCACACACGAGTTGGTGGCAATTTTTAGTCCTCAAAAAGTAGGACACCTTTT
594 TTTTC-TTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
* * * * ***** ** *
2479281 CCTCTT-----CC-C-C---TTTGTCCTCAAAGAGTAGGACGCAAAGAGCAGGACG---------
658 TCTTTTAAAGCCCACGCAAGTTAGT-GTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTT
*
2479327 --CAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCCTTTCCTCTTC
722 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTC
* *
2479390 CCTCTTGTCCTCAAAGAGCAGGTCATACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGTA
787 CCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCA
**
2479455 GGATGCACTTTATTTT-C-C--TCTTTTGTCCTCAAAGAGCAGGATC-CATTTCGTTTTCCTTTT
852 GGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGA-CGCATTTCGTTTTCCTTTT
* * * * *
2479515 CTCCTTTGTCCTCAAAGAGTAGGACGCTCTTCATTTCC-TTCTTTTCCCTTCTAGTCCT
916 CTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGTCCT
* * * * * * *
2479573 CAAAGAGCATGACATATTTCGTTTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGGACGTATTCTTT
1 CAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTT
* *
2479638 TTCTCTTTGTCCTCAATAAGCAGGACACTTTCCTT-TCTTTTTTTCCTTTGTCCTCAAGGAGCGA
66 TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTC-TTTTTTCCTTTGTCCTCAAGGAGCGA
* * *
2479702 GACCTATTTCATTCTT-TTTTCCTTTGTCCTCAAAAAGCGGGACACCCCTTCCATTTATTTCCCC
130 GACCTATTTCATT-TTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCT
* * * * *
2479766 TCCTAAAGTGTGCATACGTTGGTAGCACCCAAAAAGCCCACACAAGTTGGGGGCAAACCTTTCCA
194 TCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCA
* * * * * *
2479831 AAGCCTATAGTAACCAACACCTATCAAAAGAGGTCAATCTTTATAAAATCTCAAAATCTAGTAGG
259 AAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGG
* * * * *
2479896 GAAACCCATAAAAT--AAAAAGAACAA-TCGAATGTCGTCCTTTTACATGCATTTAGCTAAGCAT
324 GAAAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCAT
* * *
2479958 TCTTTCTTTTCCTTCACGGATAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATACTCAGAAA
389 TCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAA
* ** * * *
2480023 CAGCCAAAGAGGGGTTGCTGTAGACAACTCATTTTGTCCGGGCTAATTTTTCGGTAACCCAAAGC
454 CAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAGC
* * * * * *
2480088 ATTACTAGATAGA-GGGTTCAAAAGGTATGAGGACAAATTGGTGGAACCTTCTAGTCCTCAAAGA
519 ATTACTAGATGGAGGGGTT-GAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGA
* * * * * *
2480152 GCAGGACATCTTTTTCCTTCGAAGCCCAC-TCGGGTTGGTAGCACCTTTTAGTCCTCAAAGAGCA
583 GCGGGACATCTTTTTCTTTCAAACCCCACAT-GAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCA
* * * * * * * *
2480216 GGACGTCTATTTCATTTAAAGCCCACGCAAGTTGGTGGCAGCTTTCAGTCCTTAAAGAGCTGGAC
647 GGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGAC
* * *
2480281 GCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAACAGCAGGACGTCT
712 GCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATG-C-
* * * *
2480346 TTTTCTTTTAAAGCCCGCGCAAGCTGATGGCACCT-TTCAGTCCTCAAAGAGCAAGACGCCT-TT
775 ----CTTTT--------C-C--TCT--T--C-CCTCTT--GTCCTCAAAGAGCAGGTCG--TACT
* ** * * * *
2480409 TCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCACTTCATT
816 TCATTT------CC-TTC---TT--T-TC-CCTTTT-GTCCTCAAAGAGCAGGGCGCACTTTATT
* * * *
2480474 CCTCCT-TTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTTCTCTT-TCTTTTGTCC
866 -TTCCTCTTT--CTTTTGTCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTCTCTTTTGTCC
* * * *
2480536 TCAAAGAGTAGGACGCATTTCGTTTTCCTTTTCTCCTTTGTCCTCAAAGAGTGGGATGCTCTTCA
927 TTAAAGAGCAGGATGC---TC---TT-C-ATT-TCC--T-T--T-------T----T--T-TTC-
**
2480601 TTTCCTTCTTTTCCCTT
963 ---CCTTCTAGT-CC-T
* * * *
2480618 CTAATCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTCCTTTGTCCTCGAAAAGCAAGACG
1 C--A------AAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACG
** * * *
2480683 TACTCTTTTCCACTTTGTCCTCAAGAACCAGGACACTTTCCTT-TCCTTTTTTTCCTTTGCCCTC
58 TGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCT-C-TTTTTTCCTTTGTCCTC
* * * *
2480747 AAGGAGCGAGACCTATTTCATTCTCTTTTTCTTT-ATCCTCAAAAAGTGGGACACCTCTTCCACT
121 AAGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGA-CCTCAAAAAGTGGGACACCCCTTCCATT
* * * * *
2480811 TATTTCCCCTCCTAAAGTCTGCATAAGCTAGCAGCACTCAAAAAGCCCACACAAGTTGGTGGCAA
185 TATTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAA
* * *
2480876 ACCTTTCCAAAGCCTACAGTAACCAACACGTATCTAAGCAGGTCAAGCTTTAGAAAAACTCAAAA
250 ACCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAA
2480941 CCTAGTAGGGAAAACCATAAAATC--AAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTA
315 CCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTA
* * * * **
2481004 GCTAACCATTC-TTCTTTTCCTTCACGGGCAAAATGGCGCCTTTTGTCCTTGCCCTATTCCTGAT
380 GCTAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGAT
* ** * * ** * * * ** * **
2481068 ACTTAGAAACAGC--CGGA-CGCCTTTTCTTTTCAAAGC-CCACACGAGTTGAT---GG-CACCT
445 ACTCAGAAACAGCAAAAGAGGGGC--AGC-TGT-AGA-CACCTCA--TTTTG-TCCGGGTTAATT
* *** ****** * ***
2481125 TTT-AGT--CCTCAAAG-A--GC---A-GGACGCCTTTTTCTTTTAAAGCCCACGCAAGTTGGTG
502 TTTCAGTAACC-CAAAGCATTACTAGATGGA-GGGGTTGAAAGGT-ATGGGGACG-AA-TTGGTG
* * ** * * * * *
2481180 GCACCTTTCAGTCCTCCAAGAGTAGGAC-GCCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCA
562 GCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTC-TTTCAAACCCCACATGAGTTGGTGGCA
* * * * ** *
2481244 CTCCTTTCCTATTCCCCCTTATCCTCAAAGAGCAGGACGCCTTTTCCTATT--CCCCCTTATCCT
626 --CCTTT--TA---------GTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCC--A--CG
** *** * ** **
2481307 CAAAGAGCAG-GATGCA-CTTCATT--TCCTTC------C-TTTC-CCTTTTGTCCTCAAAGAGC
674 C-AAG-TTAGTG-T-CACCTT--TTAGTCC-TCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCC
* * ** ** * * * * *
2481360 AGGACGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAAGACGCATTTCGTTTTCCTTTT
732 A-CACG-A-GTT-GGTGGCAC-TT-TTTAGTCCTCAAAGAGC-AG--G-A-TGCCTTTTCCTCTT
* * * * *
2481425 CTCCT-TTGTCCTCAAATAGCAGGACGCT-CTTCTTTTCCTTCTTTTCCCTTCTAGCCCTCAAAG
786 C-CCTCTTGTCCTCAAAGAGCAGGTCG-TACTTCATTTCCTTCTTTTCCCTT-TTGTCCTCAAAG
* * * * * *
2481488 AGCAGGACACA-TTTCGTTTTCCTTTTTTCCTTTGTCCTCGAAA-AGCAGGACG---TAC----T
848 AGCAGGGCGCACTTT-ATTTTCC-TCTTTCTTTTGTCCTC-AAAGAGCAGGACGCATTTCGTTTT
* * * * ** *
2481544 CTTTTTCAC-TTTGTCC-TCAAGAAGTAGGACACT-TTCCTTTCC--TTTTTT-CCTT-T-GTCC
910 CCTTTTCTCTTTTGTCCTTAAAG-AGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGTCC
2481601 T
974 T
* * * * ** ***
2481602 CAAGGAGC-GAGAC-CTATTTCA--TT-CTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTT
1 CAAAGAGCAG-GACAC-ATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGG--ACGTGTT
* * * ** ** ** *
2481662 CCATTTATTTCCCCTCCTAAAGT-CTGC-ATAAGTTGGCAGCACCTAAAAAGCCCACACAAGTTG
62 -C--TT-TTT-CACT--T--TGTCCT-CAAGAAGCAGG-A-CA-CT----TTCCTTCTC---TT-
*** ** * * * * * ***** ****
2481725 GTGGCAAACCTTTCCAAAG-CCTACAATAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAA
106 -T--------TTTCCTTTGTCCT-CAAGGAGCGAGACCTATTTCATTTTCTTTTCCTTT-G---A
* * * * * * * *
2481789 TCTCAAAACCTAGTAGGGAAAACCATGAAATCAAAAAAAAAATTTAAATGTCGTCCTT-TTACA-
157 CCTCAAAA---AGT-GGGACACCCCT----TC--------CATTT--ATTTC--CCTTCCTAAAG
* ******** * * ****
2481852 --TGCAT---TTAGCTAAGCATTCTTTTTTTTCCTTCACGGACATA-ATGGTGTCTTTTGTCTTT
202 TCTGCATAAGTTGGC-AA-CA--CCCAAAAAGCC--CAC--ACA-AGTTGGTGGC--AAACCTTT
* ** * * * ** * * * * **
2481911 GCCCTATTCCTGATACTCAGAAACAGCC-A---AAGAGGGGT-AA-CTGTAG-ACACCTCATTTT
256 --CCAAAGCCT-ACAGTAACCAACA-CCTATCTAAG-GAGGTCAAGCTTTAGAAAATCTCA--AA
* * *** * ** ** ** * * ** *** ***
2481969 ATCT-G--GGTTAATGTTTCAGAAACCCAAAGCATTACTAGA-TGGAGGGGTCGAAAGGTATGGG
314 ACCTAGTAGG-GAA--AACCATAAAATCAAA--AAAAAAAAATTTGA-ATGTCG--TCCT-TTTA
* * * * *** ** ** ** * * *
2482030 GACGAATTGGTGGC--ACC-TTC----CAGTCC-TCAAAGAGCAGGA-CATCT-TTTTCTTTCAA
370 CATGCATT--TAGCTAACCATTCTTTTTTTTCCTTCACGGA-CAAAATGGTGTCTTTTGTTT--T
* * ** ** ***** ** * * ***
2482085 AGCCCACACGAGTTGGTGGCACTTTTTTAGTGCTCAAAGAGTAGG-A-C-GT---CTTTTTC-TT
430 TG--C-C-CTA-TTCCTGATACTCAGAAACAGC-AAAAGAG-GGGCAGCTGTAGAC-ACCTCATT
** * ** * * * *** * ** * ** ******
2482143 TTAACGCGCAGG-CAAGTTGGT-GGCAGCCTTCAGTC-CTAAAAGAGTCGGATGCCTTTTCTTTT
487 TTGTC-CG--GGTTAA-TTTTTCAGTAACCCAAAG-CATTACTAGA-T-GGAGGGGTTGAAAGGT
* *** * * ** * ** * *
2482205 CAAAGCCCTCACGAGTTGGTGGCATCTTTTATTCCTCAAAGAGCAAGACGT-TTTTTTTTTCAAA
545 --ATG--GGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAA
*
2482269 ACCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCC
606 CCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCC
* * * * * *
2482334 ACGTAAGTTAGTGTTACCTTTTAGTCCTCAAAGAGCAAGACTCATTTTCTTTGCAAAGCCCACAC
671 ACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACAC
* * *
2482399 GGGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTCTTCCCCCTTGTCCTCAA
736 GAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTCTTCCCTCTTGTCCTCAA
* * * * *
2482464 AGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCATTTTATT
801 AGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGGCGCACTTTATT
* * * * * *
2482529 TTCCTCTTTCTTTGGTCCACAAAAAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTATCCTCAA
866 TTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCTTTTGTCCTTAA
* *
2482594 AGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTTTAGTCAGCAAAGAGTAGGACGCTCTTCAT
931 AGAGCAGGATGCTCTTCA---------TTT-CC-TTT--T----------T-------T-TTC--
**
2482659 TTCCTTCTTTTCCTTT
963 --CCTTCTAGTCC--T
2482675 CTAGTCCTTAAAGAGCAGGACACATTTCATTTTCC--TTTTT-TTTGTCCTCGAAAAGCAGGACG
1 C-A-------AAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACG
* * * *
2482737 TGCTCTTTTTCACTTTGTCCTCAAGCAA-CATGACACTTTCTTTTTCTTTTTTCCTTTGTCCTCA
58 TGTTCTTTTTCACTTTGTCCTCAAG-AAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCA
*
2482801 AGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCATTTA
122 AGGAGCGAGACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTA
* * ** * * * *
2482866 TTTCCCCTCCTAAAGTTTGCATAAGTTGGCGGCACCTAAAAAGCCCACACAAATTGGGGGCAAAG
187 TTTCCCTTCCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAAC
* *
2482931 CTTTCCAAAGCCTACAATAACCAACACCTATCTAAAGAGGTCAAGCTTTAGAAAATCTCAAAACC
252 CTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACC
* * *
2482996 TAGTAGGGAAAACCATAAAAT-AAAAAAAAAAAATTTGAATGTCATCTTTTTACAAGCATTTAGC
317 TAGTAGGGAAAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGC
*
2483060 TAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATAC
382 TAACCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATAC
* * * * *
2483125 TCAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCACTTTGTCTGGGTTAATTTTTCGGTAAC
447 TCAGAAACAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAAC
*
2483190 CCAAAGCATTACTAGATGGAGGGGTTGAAAGGTGTGGGGACGAATTGGTGGCACCTTCCAGTCCT
512 CCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCT
* *
2483255 CAAAAAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
577 CAAAGAGCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAA
*
2483320 GAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGC
642 GAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGC
*
2483385 AGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
707 AGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
* * *
2483450 TGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGAAAGTCGTACTTCATTTCCTTCTTTTCCTTTT
772 TGCCTTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTT
* * * * *
2483515 TATCCTCAAAGAGTAGGGCGTACTTTATTTTCCTCTTTCTTTTATCCTCAAAGAGCAGGACGTAT
837 TGTCCTCAAAGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCAT
* * *
2483580 TTCGTTTTCCATTTCTCCTTTGTCCTTAAAGTGCAGGATGCTCTTCATTTCC-TTTTTTTCCCTT
902 TTCGTTTTCCTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTT
2483644 CTAGTCCT
967 CTAGTCCT
* ** *
2483652 CAAAGAGGCAAGACACATTTCATTTTCCTTTTTTTCTTTGTTTTCAAAAAGCAGGACGTGTTCTT
1 CAAAGA-GCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTT
*
2483717 TTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTTTTTCCTTTGTCCTCAAGGAGCGA
65 TTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGA
* *
2483782 GACCTATTTCATTTTCTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTGCATTTATTTCCCTT
130 GACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTT
** * *
2483847 CCTAAAGTCTAAATAAGTTGGCAGCACCCAAAAAGCCCACATAAGTTGGTGGCAAACCTTTCCAA
195 CCTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAA
* *
2483912 AGCCTAAAGTAACCAACACCTATCTAAGGAGGTCAAGCATTAGAAAATCTCAAAACCTAGTAGGG
260 AGCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGG
* * * *
2483977 AAAACCATAAAATC-AAAAAACAGATTTTGAATG-CTGTCCTTTTACATGCATTTAGCTAATCAT
325 AAAACCATAAAATCAAAAAAAAAAAATTTGAATGTC-GTCCTTTTACATGCATTTAGCTAACCAT
*
2484040 TCTTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCCCTATTCCTGATACTCAGAA
389 TC-TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAA
* * * * * * * * *
2484105 ACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTCGGGCTAATTTTTCGGTAACCCAAAG
453 ACAGCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAG
* * *
2484170 CATTACTACATTGAGGGGTCGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGA
518 CATTACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGA
** ** * * *
2484235 GTAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTG
583 GCGGGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAG
* * * * * * * *
2484300 GACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG
648 GACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACG
* *
2484365 CCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGC
713 CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGC
2484420 TGGACGTCTT
Statistics
Matches: 6773, Mismatches: 1325, Indels: 1256
0.72 0.14 0.13
Matches are distributed among these distances:
910 14 0.00
911 16 0.00
912 12 0.00
913 11 0.00
914 5 0.00
915 15 0.00
916 13 0.00
917 14 0.00
918 1 0.00
919 1 0.00
920 12 0.00
921 7 0.00
922 8 0.00
923 46 0.01
924 4 0.00
925 4 0.00
926 6 0.00
927 14 0.00
928 23 0.00
929 4 0.00
930 15 0.00
931 4 0.00
932 1 0.00
933 2 0.00
934 5 0.00
935 31 0.00
936 5 0.00
937 31 0.00
938 22 0.00
939 55 0.01
940 4 0.00
941 7 0.00
942 1 0.00
943 2 0.00
944 2 0.00
946 78 0.01
947 10 0.00
948 3 0.00
949 1 0.00
950 7 0.00
951 5 0.00
952 1 0.00
953 3 0.00
955 18 0.00
956 4 0.00
958 13 0.00
959 2 0.00
961 50 0.01
963 4 0.00
964 4 0.00
965 10 0.00
966 55 0.01
967 1 0.00
968 8 0.00
969 14 0.00
970 24 0.00
971 9 0.00
972 77 0.01
973 1352 0.20
974 677 0.10
975 456 0.07
976 147 0.02
977 588 0.09
978 7 0.00
979 20 0.00
980 72 0.01
981 16 0.00
982 5 0.00
983 16 0.00
984 15 0.00
985 12 0.00
986 6 0.00
987 6 0.00
988 16 0.00
989 21 0.00
990 13 0.00
991 59 0.01
992 12 0.00
993 29 0.00
994 8 0.00
995 26 0.00
996 15 0.00
997 4 0.00
998 9 0.00
999 7 0.00
1000 12 0.00
1001 8 0.00
1002 42 0.01
1003 14 0.00
1004 12 0.00
1005 32 0.00
1006 15 0.00
1007 44 0.01
1008 6 0.00
1009 10 0.00
1010 43 0.01
1011 45 0.01
1012 12 0.00
1013 6 0.00
1014 38 0.01
1015 339 0.05
1016 13 0.00
1017 23 0.00
1018 40 0.01
1019 37 0.01
1020 31 0.00
1021 26 0.00
1022 43 0.01
1023 50 0.01
1024 685 0.10
1025 283 0.04
1026 148 0.02
1027 188 0.03
1028 121 0.02
1029 208 0.03
1030 403 0.06
1031 347 0.05
1032 339 0.05
1033 201 0.03
1034 427 0.06
1035 165 0.02
1036 92 0.01
1037 85 0.01
1038 61 0.01
1039 58 0.01
1040 39 0.01
1041 22 0.00
1042 8 0.00
1043 100 0.01
1044 29 0.00
1045 169 0.02
1046 214 0.03
1047 148 0.02
1048 84 0.01
1049 221 0.03
1050 69 0.01
1051 207 0.03
1052 82 0.01
1053 344 0.05
1054 902 0.13
1055 212 0.03
1056 92 0.01
1057 57 0.01
1058 51 0.01
1059 126 0.02
1060 79 0.01
1061 101 0.01
1062 162 0.02
1063 79 0.01
1064 69 0.01
1065 85 0.01
1066 51 0.01
1067 18 0.00
1068 19 0.00
1069 45 0.01
1070 43 0.01
1071 96 0.01
1072 114 0.02
1073 169 0.02
1074 389 0.06
1075 64 0.01
1076 72 0.01
1077 100 0.01
1078 85 0.01
1079 67 0.01
1080 171 0.03
1081 130 0.02
1082 75 0.01
1083 48 0.01
1084 56 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (974 bp):
CAAAGAGCAGGACACATTTCATTTTCCTTTTTTTCTTTGTCCTCGAAAAGCAGGACGTGTTCTTT
TTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTCTCTTTTTTCCTTTGTCCTCAAGGAGCGAG
ACCTATTTCATTTTCTTTTCCTTTGACCTCAAAAAGTGGGACACCCCTTCCATTTATTTCCCTTC
CTAAAGTCTGCATAAGTTGGCAACACCCAAAAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAA
GCCTACAGTAACCAACACCTATCTAAGGAGGTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGA
AAACCATAAAATCAAAAAAAAAAAATTTGAATGTCGTCCTTTTACATGCATTTAGCTAACCATTC
TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACA
GCAAAAGAGGGGCAGCTGTAGACACCTCATTTTGTCCGGGTTAATTTTTCAGTAACCCAAAGCAT
TACTAGATGGAGGGGTTGAAAGGTATGGGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCG
GGACATCTTTTTCTTTCAAACCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC
GTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGTCACCTTTTAGTCCTCAAAGAGCAGGACGCCT
TTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC
CTCTTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAA
AGAGCAGGGCGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTC
CTTTTCTCTTTTGTCCTTAAAGAGCAGGATGCTCTTCATTTCCTTTTTTTTCCCTTCTAGTCCT
Found at i:2477511 original size:45 final size:44
Alignment explanation
Indices: 2477445--2477670 Score: 137
Period size: 42 Copynumber: 5.2 Consensus size: 44
2477435 GTAGGATGCC
* * * *
2477445 TTTTCCTC-TTCCCTCTGGTCCTCAAAGAGCAAGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGCACTTCA
*
2477488 -TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAG-AAGGGCGCACTTTA
1 TTTTCC-TC-TTTCCCTTTTGTCCTCAAAGAGCAA-GGCGCACTTCA
* * **
2477533 TTTTCCTCTTT--CTTTTGTCCTCAAAGAGCAAGACGCATTTTG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGCACTTCA
* ** * * *
2477575 TTTT-CTGTTTCTCC-TTTGTCCTTGAAGAGC-TGGATGCTCTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGCAAGG-CGCACTTCA
* * * * *
2477618 -TTTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCA
1 TTTTCC--TCTTTCCCTT-TTGTCCTCAAAGAGCAAGGCGCACTTCA
2477664 TTTTCCT
1 TTTTCCT
2477671 TTTTTTCTTT
Statistics
Matches: 138, Mismatches: 28, Indels: 32
0.70 0.14 0.16
Matches are distributed among these distances:
41 5 0.04
42 38 0.28
43 23 0.17
44 8 0.06
45 36 0.26
46 22 0.16
47 6 0.04
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGCACTTCA
Found at i:2478395 original size:61 final size:60
Alignment explanation
Indices: 2478194--2478541 Score: 347
Period size: 61 Copynumber: 5.7 Consensus size: 60
2478184 AGGTATGGCG
* ** * * * * * *
2478194 ACGAATTGGTGGCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTTTTTCAAATCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-GCCTTTTCTTTCAAAGCCCAC
* * * * * * ** *
2478255 ACGAGTTGGTGGCACCTTTTAGTGCTTAAAGAG-GGGACGTCTTTTTCTTTTAACGCGTAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTCAAAGCCCAC
* * * * * * *
2478315 GCAAGTTGGTGGTAGCTTTTAGTCCTAAAAGAGCTGGACGCCTTTTCTTTGCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTT-CAAAGCCCAC
* *
2478376 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTCAAAGCCCAC
* * * *
2478437 GCAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC-TTTCAAAGCCCAC
* *
2478498 ACGAGTTGGTGGCACTTTTTAGTCCCCAAAGAGCAGGACGCCTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTT
2478542 GTCGTCAAAG
Statistics
Matches: 235, Mismatches: 47, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
60 60 0.26
61 166 0.71
62 9 0.04
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCAC
Found at i:2478469 original size:122 final size:122
Alignment explanation
Indices: 2478199--2478537 Score: 437
Period size: 122 Copynumber: 2.8 Consensus size: 122
2478189 TGGCGACGAA
* * * ** * *
2478199 TTGGTGGCACCTTCCAATCCTCAAAGAGCGGGACATCTTTTTTTTTCAAATCCCACACGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
* * * * * ** *
2478264 TGGCACCTTTTAGTGCTTAAAGAG-GGGACGTCTTTTTCTTTTAACGCGTAGGCAAG
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
* * * * * * *
2478320 TTGGTGGTAGCTTTTAGTCCTAAAAGAGCTGGACGCCTTTTCTTTGCAAAGCCCTCACGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
*
2478385 TGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
*
2478442 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
* *
2478507 TGGCACTTTTTAGTCCCCAAAGAGCAGGACG
66 TGGCACCTTTTAGTCCTCAAAGAGCAGGACG
2478538 CCTTGTCGTC
Statistics
Matches: 185, Mismatches: 32, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
121 74 0.40
122 111 0.60
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.30
Consensus pattern (122 bp):
TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCAAG
Found at i:2478689 original size:43 final size:42
Alignment explanation
Indices: 2478540--2478928 Score: 232
Period size: 46 Copynumber: 9.3 Consensus size: 42
2478530 GCAGGACGCC
* * *
2478540 TTGTCGTCAAAGAGTAGGACGCACTTCA-TTTCCTTCTTTTCCTTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-T-TTTTCC--T
* *
2478585 TTGCCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTCCT
2478627 TTGTCCTCAAAGAGCAGGACGCA-TTTAGTTTTCCTTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTTA-TTTTCCTTTT-TCCT
* * *
2478670 TTGTCCTCAAAGAGTAGGACGCTC-TTAATTTCCTTCTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCC-T-TTTT-CCT
* * * *
2478714 TCTAGCCCTCAGAGAGCAGGACGCTCTTCA-TTTCCTTCTTTTCCCT
1 T-T-GTCCTCAAAGAGCAGGACGCACTTTATTTTCC-T-TTTT-CCT
*
2478760 TCTAGTCCTCAAAGAGCAGGACACA-TTTCATTTTCCTTTTT--T
1 T-T-GTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTTTTTCCT
*
2478802 TTGTCCTCGAAA-AGCAGGACG-----TA--CT-CTTTTTCACT
1 TTGTCCTC-AAAGAGCAGGACGCACTTTATTTTCCTTTTTC-CT
* * *
2478837 TTGTCCTC-AAGAAACAGGACG--CTTTCCTTTTCTTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACGCACTTT-ATTTTCCTTTTTCCT
*
2478878 TTGTCCTCAAGGAGC-GAGAC-CTA-TTTCATTTT-C-TTTTCCT
1 TTGTCCTCAAAGAGCAG-GACGC-ACTTT-ATTTTCCTTTTTCCT
2478918 TTGTCCTCAAA
1 TTGTCCTCAAA
2478929 AAGTGGGACA
Statistics
Matches: 284, Mismatches: 30, Indels: 65
0.75 0.08 0.17
Matches are distributed among these distances:
32 6 0.02
33 3 0.01
35 18 0.06
36 1 0.00
38 1 0.00
40 32 0.11
41 24 0.08
42 56 0.20
43 29 0.10
44 12 0.04
45 32 0.11
46 63 0.22
47 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (42 bp):
TTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTCCT
Found at i:2478702 original size:130 final size:131
Alignment explanation
Indices: 2478540--2478822 Score: 355
Period size: 130 Copynumber: 2.2 Consensus size: 131
2478530 GCAGGACGCC
* * * *
2478540 TTGTCGTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTT-CCTTTTTGCCCTCAAAGAGCAGGA
1 TTGTCCTCAAAGAGTAGGACGCACTTAATTTCCTTCTTTTCCCTTCTAGCCCTCAAAGAGCAGGA
* * *
2478604 CGCACTTTATTTTCC-T-TTTT-CTT-TTGTCCTCAAAGAGCAGGACGCATTT-AGTTTTCCTTT
66 CGCACTTCA-TTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCA-TTTTCCTTT
2478664 TCTCCT
129 T-T--T
* *
2478670 TTGTCCTCAAAGAGTAGGACGCTCTTAATTTCCTTCTTTTCCCTTCTAGCCCTCAGAGAGCAGGA
1 TTGTCCTCAAAGAGTAGGACGCACTTAATTTCCTTCTTTTCCCTTCTAGCCCTCAAAGAGCAGGA
*
2478735 CGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTT
66 CGCACTTCATTTCCTTCTTTT-CCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTT
2478800 TT
130 TT
*
2478802 TTGTCCTCGAAA-AGCAGGACG
1 TTGTCCTC-AAAGAGTAGGACG
2478823 TACTCTTTTT
Statistics
Matches: 134, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
130 42 0.31
131 29 0.22
132 21 0.16
133 3 0.02
134 4 0.03
135 34 0.25
136 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (131 bp):
TTGTCCTCAAAGAGTAGGACGCACTTAATTTCCTTCTTTTCCCTTCTAGCCCTCAAAGAGCAGGA
CGCACTTCATTTCCTTCTTTTCCTTCTAGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
T
Found at i:2478790 original size:46 final size:46
Alignment explanation
Indices: 2478546--2478802 Score: 245
Period size: 46 Copynumber: 5.8 Consensus size: 46
2478536 CGCCTTGTCG
* * * * *
2478546 TCAAAGAGTAGGACGCACTTCA-TTTCCTTCTTTTCCTTTTTGCCC
1 TCAAAGAGCAGGACGCATTTCATTTTCCTTCTTTTCCCTTTAGTCC
*
2478591 TCAAAGAGCAGGACGCACTTT-ATTTTCC-T-TTTT--CTTTTGTCC
1 TCAAAGAGCAGGACGCA-TTTCATTTTCCTTCTTTTCCCTTTAGTCC
*
2478633 TCAAAGAGCAGGACGCATTT-AGTTTTCCTT-TTCT-CCTTT-GTCC
1 TCAAAGAGCAGGACGCATTTCA-TTTTCCTTCTTTTCCCTTTAGTCC
* * *
2478676 TCAAAGAGTAGGACGC-TCTT-AATTTCCTTCTTTTCCCTTCTAGCCC
1 TCAAAGAGCAGGACGCAT-TTCATTTTCCTTCTTTTCCCTT-TAGTCC
*
2478722 TCAGAGAGCAGGACGC-TCTTCA-TTTCCTTCTTTTCCCTTCTAGTCC
1 TCAAAGAGCAGGACGCAT-TTCATTTTCCTTCTTTTCCCTT-TAGTCC
* *
2478768 TCAAAGAGCAGGACACATTTCATTTTCCTTTTTTT
1 TCAAAGAGCAGGACGCATTTCATTTTCCTTCTTTT
2478803 TGTCCTCGAA
Statistics
Matches: 184, Mismatches: 15, Indels: 24
0.83 0.07 0.11
Matches are distributed among these distances:
41 4 0.02
42 38 0.21
43 29 0.16
44 12 0.07
45 19 0.10
46 69 0.38
47 13 0.07
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (46 bp):
TCAAAGAGCAGGACGCATTTCATTTTCCTTCTTTTCCCTTTAGTCC
Found at i:2479318 original size:14 final size:14
Alignment explanation
Indices: 2479299--2479331 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2479289 CCTTTGTCCT
*
2479299 CAAAGAGTAGGACG
1 CAAAGAGCAGGACG
2479313 CAAAGAGCAGGACG
1 CAAAGAGCAGGACG
2479327 CAAAG
1 CAAAG
2479332 CCCACACGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.33, T:0.03
Consensus pattern (14 bp):
CAAAGAGCAGGACG
Found at i:2479451 original size:83 final size:81
Alignment explanation
Indices: 2479358--2479627 Score: 237
Period size: 83 Copynumber: 3.2 Consensus size: 81
2479348 GCACTTTTTA
*
2479358 GTCCTCAAAGAGCAGGATGCCCTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCATACTTCAT
1 GTCCTCAAAGAGTAGGATGCCCTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCATA-TTCAT
2479423 TTCCTTCTTTTCCCTTTT
65 TTCCTTCTTTTCCC-TTT
* * * *
2479441 GTCCTCAAAGAGTAGGATGCACTTT-ATTTTCCTCTTTTGTCCTCAAAGAGCAGGATCCAT-TTC
1 GTCCTCAAAGAGTAGGATGCCCTTTCCTCTTCC-CTCTTGTCCTCAAAGAGCAGG-T-CATATTC
* *
2479504 GTTT--TCCTTTTCTCCTTT
63 ATTTCCTTCTTTTC-CCTTT
* * * *
2479522 GTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCATGACA
1 GTCCTCAAAGAGTAGGATGC-C--C-TTTCC-TC--TTCCC-TCTTGTCCTCAAAGAGCAGGTCA
*
2479587 TATTTCGTTTTCCTT-TTTT-CCTTT
58 TA-TTC-ATTTCCTTCTTTTCCCTTT
*
2479611 GTCCTCAAAAAGTAGGA
1 GTCCTCAAAGAGTAGGA
2479628 CGTATTCTTT
Statistics
Matches: 151, Mismatches: 18, Indels: 30
0.76 0.09 0.15
Matches are distributed among these distances:
81 29 0.19
82 7 0.05
83 49 0.32
84 2 0.01
85 6 0.04
87 4 0.03
88 1 0.01
89 45 0.30
90 3 0.02
91 4 0.03
92 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.39
Consensus pattern (81 bp):
GTCCTCAAAGAGTAGGATGCCCTTTCCTCTTCCCTCTTGTCCTCAAAGAGCAGGTCATATTCATT
TCCTTCTTTTCCCTTT
Found at i:2479529 original size:43 final size:42
Alignment explanation
Indices: 2479358--2479735 Score: 152
Period size: 38 Copynumber: 9.2 Consensus size: 42
2479348 GCACTTTTTA
*
2479358 GTCCTCAAAGAGCAGGATGCC----C-TTTCCTCTTC-CCTCTT
1 GTCCTCAAAGAGCAGGAT-CCATTTCTTTTCCTTTTCTCCT-TT
* *
2479396 GTCCTCAAAGAGCAGG-T-CATACTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGATCCAT--TTCTTTTCCTT-TTCT-CC-TTT
* * *
2479441 GTCCTCAAAGAGTAGGATGCACTTTATTTTCC---TCT--TTT
1 GTCCTCAAAGAGCAGGATCCA-TTTCTTTTCCTTTTCTCCTTT
2479479 GTCCTCAAAGAGCAGGATCCATTTCGTTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGATCCATTTC-TTTTCCTTTTCTCCTTT
* * *
2479522 GTCCTCAAAGAGTAGGA-CGC-TCTTCATTTCCTTCTTTTCCCTTCT
1 GTCCTCAAAGAGCAGGATC-CAT-TTCTTTTCCTT-TTCT-CCTT-T
* * *
2479567 AGTCCTCAAAGAGCATGA-CATATTTCGTTTTCCTTTTTTCCTTT
1 -GTCCTCAAAGAGCAGGATC-CATTTC-TTTTCCTTTTCTCCTTT
* * *
2479611 GTCCTCAAAAAGTAGGA--CGTATTC---T--TTTTCT-CTTT
1 GTCCTCAAAGAGCAGGATCCAT-TTCTTTTCCTTTTCTCCTTT
* * *
2479646 GTCCTCAATA-AGCAGGA--CACTTTCCTTTCTTTTTTTCCTTT
1 GTCCTCAA-AGAGCAGGATCCA-TTTCTTTTCCTTTTCTCCTTT
* * *
2479687 GTCCTCAAGGAGC-GAGA-CCTATTTC-ATT-CTTTTTTCCTTT
1 GTCCTCAAAGAGCAG-GATCC-ATTTCTTTTCCTTTTCTCCTTT
2479727 GTCCTCAAA
1 GTCCTCAAA
2479736 AAGCGGGACA
Statistics
Matches: 269, Mismatches: 30, Indels: 80
0.71 0.08 0.21
Matches are distributed among these distances:
35 23 0.09
36 7 0.03
37 4 0.01
38 46 0.17
40 25 0.09
41 24 0.09
42 25 0.09
43 43 0.16
44 5 0.02
45 24 0.09
46 32 0.12
47 10 0.04
48 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.41
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGATCCATTTCTTTTCCTTTTCTCCTTT
Found at i:2479606 original size:46 final size:42
Alignment explanation
Indices: 2479476--2479744 Score: 174
Period size: 43 Copynumber: 6.5 Consensus size: 42
2479466 ATTTTCCTCT
* *
2479476 TTTGTCCTCAAAGAGCAGGATCCATTTCGTTTTCCTTTTCTCC
1 TTTGTCCTCAAAGAGCAGGA-CTATTTCGTTTTCCTTTTTTCC
* ** *
2479519 TTTGTCCTCAAAGAGTAGGACGCTCTTC-ATTTCCTTCTTTTCCC
1 TTTGTCCTCAAAGAGCAGGACTAT-TTCGTTTTCCTT-TTTT-CC
*
2479563 TTCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTTCC
1 TT-T-GTCCTCAAAGAGCAGGAC-TATTTCGTTTTCCTTTTTTCC
* * *
2479608 TTTGTCCTCAAAAAGTAGG---A---CGTATT-C-TTTTTCTC
1 TTTGTCCTCAAAGAGCAGGACTATTTCGTTTTCCTTTTTTC-C
* *
2479643 TTTGTCCTCAATA-AGCAGGAC-ACTTTC-CTTTCTTTTTTTCC
1 TTTGTCCTCAA-AGAGCAGGACTA-TTTCGTTTTCCTTTTTTCC
* *
2479684 TTTGTCCTCAAGGAGC-GAGACCTATTTC--ATT-CTTTTTTCC
1 TTTGTCCTCAAAGAGCAG-GA-CTATTTCGTTTTCCTTTTTTCC
* *
2479724 TTTGTCCTCAAAAAGCGGGAC
1 TTTGTCCTCAAAGAGCAGGAC
2479745 ACCCCTTCCA
Statistics
Matches: 181, Mismatches: 23, Indels: 48
0.72 0.09 0.19
Matches are distributed among these distances:
34 6 0.03
35 18 0.10
36 6 0.03
37 1 0.01
39 2 0.01
40 27 0.15
41 21 0.12
42 20 0.11
43 39 0.22
44 5 0.03
45 5 0.03
46 23 0.13
47 8 0.04
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.42
Consensus pattern (42 bp):
TTTGTCCTCAAAGAGCAGGACTATTTCGTTTTCCTTTTTTCC
Found at i:2479663 original size:124 final size:117
Alignment explanation
Indices: 2479511--2479738 Score: 282
Period size: 116 Copynumber: 1.9 Consensus size: 117
2479501 TTCGTTTTCC
* *
2479511 TTTTCTCCTTTGTCCTCAAAGAGTAGGACGCTCTTCATTTCCTTCTTTTCCCTTCTAGTCCTCAA
1 TTTTCTCCTTTGTCCTCAAAGAGCAGGACACT-TTCATTT-CTT-TTTTCCCTT-T-GTCCTCAA
*
2479576 AGAGC-ATGACATATTTCGTTTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGGACGTATTCT
61 AGAGCGA-GACATATTTC--ATT-CTTTTTTCCTTTGTCCTCAAAAAGTAGGACGTATTCT
* * *
2479636 TTTTCT-CTTTGTCCTCAATA-AGCAGGACACTTTCCTTTCTTTTTTTCCTTTGTCCTCAAGGAG
1 TTTTCTCCTTTGTCCTCAA-AGAGCAGGACACTTTCATTTCTTTTTTCCCTTTGTCCTCAAAGAG
*
2479699 CGAGACCTATTTCATTCTTTTTTCCTTTGTCCTCAAAAAG
65 CGAGACATATTTCATTCTTTTTTCCTTTGTCCTCAAAAAG
2479739 CGGGACACCC
Statistics
Matches: 94, Mismatches: 7, Indels: 13
0.82 0.06 0.11
Matches are distributed among these distances:
116 24 0.26
117 2 0.02
119 21 0.22
120 2 0.02
121 8 0.09
122 3 0.03
123 6 0.06
124 21 0.22
125 7 0.07
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.43
Consensus pattern (117 bp):
TTTTCTCCTTTGTCCTCAAAGAGCAGGACACTTTCATTTCTTTTTTCCCTTTGTCCTCAAAGAGC
GAGACATATTTCATTCTTTTTTCCTTTGTCCTCAAAAAGTAGGACGTATTCT
Found at i:2479688 original size:41 final size:40
Alignment explanation
Indices: 2479599--2479746 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
2479589 TTTCGTTTTC
* *
2479599 CTTTTTTCCTTTGTCCTCAAAAAGTAGGAC-GTATT-C--T
1 CTTTTTTCCTTTGTCCTCAAAAAG-CGGACACTATTCCATT
* * *
2479636 -TTTTCT-CTTTGTCCTCAATAAGCAGGACACT-TTCCTTT
1 CTTTTTTCCTTTGTCCTCAAAAAGC-GGACACTATTCCATT
** *
2479674 CTTTTTTTCCTTTGTCCTCAAGGAGCGAGAC-CTATTTCATT
1 C-TTTTTTCCTTTGTCCTCAAAAAGCG-GACACTATTCCATT
2479715 CTTTTTTCCTTTGTCCTCAAAAAGCGGGACAC
1 CTTTTTTCCTTTGTCCTCAAAAAGC-GGACAC
2479747 CCCTTCCATT
Statistics
Matches: 88, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
35 21 0.24
36 7 0.08
38 1 0.01
40 33 0.38
41 26 0.30
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.42
Consensus pattern (40 bp):
CTTTTTTCCTTTGTCCTCAAAAAGCGGACACTATTCCATT
Found at i:2480342 original size:122 final size:122
Alignment explanation
Indices: 2480140--2480464 Score: 463
Period size: 122 Copynumber: 2.7 Consensus size: 122
2480130 GGAACCTTCT
* ** * * * * *
2480140 AGTCCTCAAAGAGCAGGACATCTTTT-TCCTTCGAAGCCCACTCGGGTTGGTAGCACCTTTTAGT
1 AGTCCTCAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGT
* * *
2480204 CCTCAAAGAGCAGGACGTCTATTTCATTTAAAGCCCACGCAAGTTGGTGGCAGCTTTC
65 CCTCAAAGAGCAGGACGTCTATTTCATTTAAAGCCCACGCAAGCTGATGGCACCTTTC
* **
2480262 AGTCCTTAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTC
1 AGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTC
* * * *
2480327 CTCAAACAGCAGGACGTCTTTTTCTTTTAAAGCCCGCGCAAGCTGATGGCACCTTTC
66 CTCAAAGAGCAGGACGTCTATTTCATTTAAAGCCCACGCAAGCTGATGGCACCTTTC
*
2480384 AGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTC
1 AGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTC
2480449 CTCAAAGAGCAGGACG
66 CTCAAAGAGCAGGACG
2480465 CACTTCATTC
Statistics
Matches: 181, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
122 180 0.99
123 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (122 bp):
AGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTC
CTCAAAGAGCAGGACGTCTATTTCATTTAAAGCCCACGCAAGCTGATGGCACCTTTC
Found at i:2480434 original size:183 final size:183
Alignment explanation
Indices: 2480125--2480465 Score: 443
Period size: 183 Copynumber: 1.9 Consensus size: 183
2480115 TGAGGACAAA
* * * ** * *
2480125 TTGGTGGAACCTTCTAGTCCTCAAAGAGCAGGACATCTTTTTCCTTCGAAGCCCACTCGGGTTGG
1 TTGGTGGAACCTTCTAGTCCTCAAACAGCAGGACATCTTTTTCCTTCAAAGCCCACGCAAGCTGA
* * * *
2480190 TAGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTATTTCATTTAAAGCCCACGCAAGTTGGTGGC
66 TAGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTATTTCATTTAAAGCCCACACAAGTTGGTGGC
* *
2480255 AGC-TTTCAGTCCTTAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACGAG
131 A-CTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * * *
2480308 TTGGTGGCACCTTTTAGTCCTCAAACAGCAGGACGTCTTTTTCTTTTAAAGCCCGCGCAAGCTGA
1 TTGGTGGAACCTTCTAGTCCTCAAACAGCAGGACATCTTTTTCCTTCAAAGCCCACGCAAGCTGA
* * *
2480373 TGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCT-TTTCTTTTCAAAGCCCACACGAGTTGGTGG
66 TAGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTATTTCATTT-AAAGCCCACACAAGTTGGTGG
*
2480437 CACTTTTTAGTCCTCAAAGAGCAGGACGC
130 CACTTTTCAGTCCTCAAAGAGCAGGACGC
2480466 ACTTCATTCC
Statistics
Matches: 133, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
182 8 0.06
183 125 0.94
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (183 bp):
TTGGTGGAACCTTCTAGTCCTCAAACAGCAGGACATCTTTTTCCTTCAAAGCCCACGCAAGCTGA
TAGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTATTTCATTTAAAGCCCACACAAGTTGGTGGC
ACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2480465 original size:61 final size:61
Alignment explanation
Indices: 2480125--2480465 Score: 391
Period size: 61 Copynumber: 5.6 Consensus size: 61
2480115 TGAGGACAAA
* * ** * * * *
2480125 TTGGTGGAACCTTCTAGTCCTCAAAGAGCAGGACATCTTTT-TCCTTCGAAGCCCACTCGGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* * * * *
2480186 TTGGTAGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTATTTCATTT-AAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCT-TTTCTTTTCAAAGCCCACACGAG
* * * *
2480247 TTGGTGGCAGCTTTCAGTCCTTAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
2480308 TTGGTGGCACCTTTTAGTCCTCAAACAGCAGGACGTCTTTTTCTTTT-AAAGCCCGCGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
* * * *
2480369 CTGATGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
*
2480430 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGC
2480466 ACTTCATTCC
Statistics
Matches: 233, Mismatches: 42, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
60 17 0.07
61 201 0.86
62 15 0.06
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2480504 original size:44 final size:43
Alignment explanation
Indices: 2480441--2480669 Score: 187
Period size: 44 Copynumber: 5.2 Consensus size: 43
2480431 TGGTGGCACT
*
2480441 TTTTAGTCCTCAAAGAGCAGGACGCACTTCATTCCTCCTTTTCCC
1 TTTT-GTCCTCAAAGAGTAGGACGCACTTCATT-CTCCTTTTCCC
* * * *
2480486 TTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTTCTCTTT--C
1 TTTTGTCCTCAAAGAGTAGGACGCACTTCATTCTCCT-TTTCCC
* * *
2480528 TTTTGTCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTCTCC
1 TTTTGTCCTCAAAGAGTAGGACGCACTTCATTCTCCTTTTC-CC
* * * *
2480572 -TTTGTCCTCAAAGAGTGGGATGCTCTTCATTTCCTTCTTTTCCC
1 TTTTGTCCTCAAAGAGTAGGACGCACTTCA-TT-CTCCTTTTCCC
** * * * * *
2480616 TTCTAATCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTCC
1 TT-TTGTCCTCAAAGAGTAGGACGCACTTCATTCTCC-TTTTCCC
2480661 -TTTGTCCTC
1 TTTTGTCCTC
2480670 GAAAAGCAAG
Statistics
Matches: 147, Mismatches: 28, Indels: 20
0.75 0.14 0.10
Matches are distributed among these distances:
41 3 0.02
42 33 0.22
43 33 0.22
44 38 0.26
45 20 0.14
46 20 0.14
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.41
Consensus pattern (43 bp):
TTTTGTCCTCAAAGAGTAGGACGCACTTCATTCTCCTTTTCCC
Found at i:2480585 original size:43 final size:43
Alignment explanation
Indices: 2480446--2480669 Score: 208
Period size: 42 Copynumber: 5.1 Consensus size: 43
2480436 GCACTTTTTA
* * *
2480446 GTCCTCAAAGAGCAGGACGCACTTCATTCCTCCTTTTC-CCTTTT
1 GTCCTCAAAGAGTAGGACGCATTTCATT-TTCCTTTTCTCC-TTT
* *
2480490 GTCCTCAAAGAGCAGGACGCACTTT-ATTTTTCTCTTTCT--TTT
1 GTCCTCAAAGAGTAGGACGCA-TTTCATTTTCCT-TTTCTCCTTT
*
2480532 GTCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGTAGGACGCATTTCATTTTCCTTTTCTCCTTT
* * *
2480575 GTCCTCAAAGAGTGGGATGC-TCTTCA-TTTCCTTCTTTTCCCTTCT
1 GTCCTCAAAGAGTAGGACGCAT-TTCATTTTCCTT-TTCT-CCTT-T
* * * *
2480620 AATCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTTCCTTT
1 -GTCCTCAAAGAGTAGGACGCATTTCATTTTCCTTTTCTCCTTT
2480664 GTCCTC
1 GTCCTC
2480670 GAAAAGCAAG
Statistics
Matches: 151, Mismatches: 16, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
41 8 0.05
42 37 0.25
43 35 0.23
44 33 0.22
45 7 0.05
46 23 0.15
47 8 0.05
ACGTcount: A:0.17, C:0.28, G:0.14, T:0.41
Consensus pattern (43 bp):
GTCCTCAAAGAGTAGGACGCATTTCATTTTCCTTTTCTCCTTT
Found at i:2480659 original size:46 final size:44
Alignment explanation
Indices: 2480442--2480669 Score: 159
Period size: 43 Copynumber: 5.2 Consensus size: 44
2480432 GGTGGCACTT
* * * *
2480442 TTTAGTCCTCAAAGAGCAGGACGCACTTC--ATTCCTCCTTTTCCC
1 TTTA-TCCTCAAAGAGTAGGACGCATTTCGTTTTCCT-TTTTTCCC
* * * * * *
2480486 TTTTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTTC-TCTTT-CT
1 -TTTATCCTCAAAGAGTAGGACGCA-TTTCGTTTTCCTTTTTTCCC
* *
2480529 TTTGTCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTCT-CC
1 TTTATCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTTTCCC
* * * *
2480572 TTTGTCCTCAAAGAGTGGGATGC-TCTTC-ATTTCCTTCTTTTCCC
1 TTTATCCTCAAAGAGTAGGACGCAT-TTCGTTTTCCTT-TTTTCCC
*
2480616 TTCTAATCCTCAAAGAGTAGGACACATTTCGTTTTCCTTTTTT-CC
1 TT-T-ATCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTTTCCC
*
2480661 TTTGTCCTC
1 TTTATCCTC
2480670 GAAAAGCAAG
Statistics
Matches: 148, Mismatches: 23, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.02
42 36 0.24
43 37 0.25
44 28 0.19
45 10 0.07
46 26 0.18
47 8 0.05
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (44 bp):
TTTATCCTCAAAGAGTAGGACGCATTTCGTTTTCCTTTTTTCCC
Found at i:2481182 original size:61 final size:60
Alignment explanation
Indices: 2481082--2481244 Score: 245
Period size: 61 Copynumber: 2.7 Consensus size: 60
2481072 AGAAACAGCC
* *
2481082 GGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGATGGCACCTTTTAGTCCTCAAAGAGCA
1 GGACGCCTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCA
* * * *
2481143 GGACGCCTTTTTCTTTTAAAGCCCACGCAAGTTGGTGGCACCTTTCAGTCCTCCAAGAGTA
1 GGACGCC-TTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCA
2481204 GGACGCCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
1 GGACGCCTTTTC-TTTTAAAGCCCACACGAGTTGGTGGCAC
2481245 TCCTTTCCTA
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
60 5 0.05
61 78 0.85
62 9 0.10
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (60 bp):
GGACGCCTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCA
Found at i:2481352 original size:45 final size:45
Alignment explanation
Indices: 2481303--2481539 Score: 201
Period size: 43 Copynumber: 5.4 Consensus size: 45
2481293 TTCCCCCTTA
*
2481303 TCCTCAAAGAGCAGGATGCACTTCATTTCCTTCCTTTCCCTTTTG
1 TCCTCAAAGAGCAGGACGCACTTCATTTCCTTCCTTTCCCTTTTG
*
2481348 TCCTCAAAGAGCAGGACGCACTTTATTTTCC-T-CTTT--CTTTTG
1 TCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCCTTTCCCTTTTG
* * *
2481390 TCCTCAAAGAGCAAGACGCATTTC-GTT--TTCCTTTTCTCC-TTTG
1 TCCTCAAAGAGCAGGACGCACTTCATTTCCTTCC-TTTC-CCTTTTG
* * * * *
2481433 TCCTCAAATAGCAGGACGCTCTTCTTTTCCTTCTTTTCCCTTCTAG
1 TCCTCAAAGAGCAGGACGCACTTCATTTCCTTCCTTTCCCTT-TTG
* * * * *
2481479 CCCTCAAAGAGCAGGACACATTTCGTTTTCCTT--TTTTCC-TTTG
1 TCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTCCTTTCCCTTTTG
2481522 TCCTCGAAA-AGCAGGACG
1 TCCTC-AAAGAGCAGGACG
2481540 TACTCTTTTT
Statistics
Matches: 156, Mismatches: 22, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
39 1 0.01
40 3 0.02
41 3 0.02
42 27 0.17
43 38 0.24
44 13 0.08
45 34 0.22
46 29 0.19
47 8 0.05
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (45 bp):
TCCTCAAAGAGCAGGACGCACTTCATTTCCTTCCTTTCCCTTTTG
Found at i:2481451 original size:43 final size:43
Alignment explanation
Indices: 2481265--2481539 Score: 225
Period size: 42 Copynumber: 6.4 Consensus size: 43
2481255 TTCCCCCTTA
* * * *
2481265 TCCTCAAAGAGCAGGACGC----C-TTTTCCTATTCCCCCTTA
1 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTG
* * *
2481303 TCCTCAAAGAGCAGGATGCACTTC-ATTTCCTTCCTT-TCCCTTTTG
1 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTT--TTCT-CC-TTTG
*
2481348 TCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTTTCT--TTTG
1 TCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCT-TTTCTCCTTTG
*
2481390 TCCTCAAAGAGCAAGACGCATTTCGTTTTCCTTTTCTCCTTTG
1 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTG
* *
2481433 TCCTCAAATAGCAGGACGC-TCTTC-TTTTCCTTCTTTTCCCTTCTAG
1 TCCTCAAAGAGCAGGACGCAT-TTCGTTTTCCTT-TTCT-CCTT-T-G
* * *
2481479 CCCTCAAAGAGCAGGACACATTTCGTTTTCCTTTTTTCCTTTG
1 TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTG
2481522 TCCTCGAAA-AGCAGGACG
1 TCCTC-AAAGAGCAGGACG
2481540 TACTCTTTTT
Statistics
Matches: 195, Mismatches: 19, Indels: 41
0.76 0.07 0.16
Matches are distributed among these distances:
38 18 0.09
41 8 0.04
42 46 0.24
43 40 0.21
44 12 0.06
45 28 0.14
46 33 0.17
47 10 0.05
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.36
Consensus pattern (43 bp):
TCCTCAAAGAGCAGGACGCATTTCGTTTTCCTTTTCTCCTTTG
Found at i:2481511 original size:89 final size:84
Alignment explanation
Indices: 2481344--2481539 Score: 250
Period size: 89 Copynumber: 2.2 Consensus size: 84
2481334 TCCTTTCCCT
* * *
2481344 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAAGACGC
1 TTTGTCCTCAAA-AGCAGGACGCACTTTATTTTCCTCTTTCTTTAGCCCTCAAAGAGCAAGACAC
2481409 ATTTCGTTTTCCTTTTCTCC
65 ATTTCGTTTTCCTTTTCTCC
* * *
2481429 TTTGTCCTCAAATAGCAGGACGCTC-TTCTTTTCCTTCTTTTCCCTTCTAGCCCTCAAAGAGCAG
1 TTTGTCCTCAAA-AGCAGGACGCACTTTATTTTCC-TC-TTT--CTT-TAGCCCTCAAAGAGCAA
*
2481493 GACACATTTCGTTTTCCTTTTTTCC
60 GACACATTTCGTTTTCCTTTTCTCC
2481518 TTTGTCCTCGAAAAGCAGGACG
1 TTTGTCCTC-AAAAGCAGGACG
2481540 TACTCTTTTT
Statistics
Matches: 97, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
84 8 0.08
85 25 0.26
86 3 0.03
88 3 0.03
89 55 0.57
90 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (84 bp):
TTTGTCCTCAAAAGCAGGACGCACTTTATTTTCCTCTTTCTTTAGCCCTCAAAGAGCAAGACACA
TTTCGTTTTCCTTTTCTCC
Found at i:2482246 original size:61 final size:61
Alignment explanation
Indices: 2482031--2482443 Score: 406
Period size: 61 Copynumber: 6.8 Consensus size: 61
2482021 AGGTATGGGG
* ** *
2482031 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTC-TTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-GCTTTTTCTTTTCAAAGCCCAC
* * * * * *
2482092 ACGAGTTGGTGGCACTTTTTTAGTGCTCAAAGAGTAGGACGTCTTTTTCTTTT-AACGCGCAG
1 ACGAGTTGGTGGCAC-CTTTTAGTCCTCAAAGAGCAGGACG-CTTTTTCTTTTCAAAGCCCAC
* * * * * * *
2482154 GCAAGTTGGTGGCAGCC-TTCAGTCCTAAAAGAGTC-GGATGCCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCA-CCTTTTAGTCCTCAAAGAG-CAGGACGCTTTTTCTTTTCAAAGCCCAC
* * * * *
2482215 ACGAGTTGGTGGCATCTTTTATTCCTCAAAGAGCAAGACG-TTTTTTTTTTCAAAACCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTCAAAGCCCAC
*
2482275 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTT-AAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CTTTTTCTTTTCAAAGCCCAC
*** * ** * * * *
2482336 GTAAGTTAGTGTTACCTTTTAGTCCTCAAAGAGCAAGACTCATTTTCTTTGCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTCAAAGCCCAC
* * *
2482397 ACGGGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTC
2482444 CTCTTCCCCC
Statistics
Matches: 280, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
60 73 0.26
61 150 0.54
62 53 0.19
63 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTCAAAGCCCAC
Found at i:2482262 original size:123 final size:122
Alignment explanation
Indices: 2482036--2482385 Score: 333
Period size: 121 Copynumber: 2.9 Consensus size: 122
2482026 TGGGGACGAA
* *
2482036 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTCCAGTCCTAAAAGAGCAGGA-ATCCTTTTCTTTCAAAGCCCACACGAGTTGG
* * * *
2482101 TGGCACTTTTTTAGTGCTCAAAGAGTAGGACGTCTTTTTCTTTTAACGCGCAGGCAAG
65 TGGCACTCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAACGCGCAGGCAAG
*
2482159 TTGGTGGCAGCCTT-CAGTCCTAAAAGAGTC-GG-ATGCCTTTTCTTTTCAAAGCCCTCACGAGT
1 TTGGTGGCA-CCTTCCAGTCCTAAAAGAG-CAGGAAT-CCTTTTC-TTTCAAAGCCCACACGAGT
* ** *
2482221 TGGTGGCA-TCTTTTATTCCTCAAAGAGCAAGACGT-TTTTT-TTTTCAAAACCCA--CATGAG
62 TGGTGGCACTCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTT-AACGCGCAGGCA--AG
** * * * * *** *
2482280 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGTAAGTTAG
1 TTGGTGGCACCTTCCAGTCCTAAAAGAGCAGGA-ATCCTTTTCTTTCAAAGCCCACACGAGTTGG
** *
2482345 TGTTAC-CTTTTAGTCCTCAAAGAGCAAGAC-TCATTTTCTTT
65 TGGCACTCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTT
2482386 GCAAAGCCCA
Statistics
Matches: 188, Mismatches: 25, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
119 2 0.01
120 10 0.05
121 83 0.44
122 37 0.20
123 51 0.27
124 5 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (122 bp):
TTGGTGGCACCTTCCAGTCCTAAAAGAGCAGGAATCCTTTTCTTTCAAAGCCCACACGAGTTGGT
GGCACTCTTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAACGCGCAGGCAAG
Found at i:2482384 original size:182 final size:184
Alignment explanation
Indices: 2482031--2482442 Score: 494
Period size: 182 Copynumber: 2.2 Consensus size: 184
2482021 AGGTATGGGG
* * ** * *
2482031 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGA
1 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAACCCACACGA
* * * * * *
2482096 GTTGGTGGCACTTTTTTAGTGCTCAAAGAGTAGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
66 GTTGGTGGCACTCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTT
* * * * *
2482161 GGTGGCAGCCTTCAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTC
131 AGTGGCAGCCTTCAGTCCTAAAAGAGTCAGATGCATTTTCTTTGCAAAGCCCAC
* * * *
2482215 ACGAGTTGGTGGCA-TCTTTTATTCCTCAAAGAGCAAGACGT-TTTTTTTTTCAAAACCCACATG
1 ACGAGTTGGTGGCACT-TTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAACCCACACG
*
2482278 AGTTGGTGGCAC-CTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGTAAGT
65 AGTTGGTGGCACTCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGT
** * *
2482342 TAGTGTTA-CCTTTTAGTCCTCAAAGAG-CAAGACT-CATTTTCTTTGCAAAGCCCAC
130 TAGTGGCAGCC-TTCAGTCCTAAAAGAGTC-AGA-TGCATTTTCTTTGCAAAGCCCAC
* *
2482397 ACGGGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
2482443 CCTCTTCCCC
Statistics
Matches: 192, Mismatches: 30, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
181 3 0.02
182 119 0.62
183 37 0.19
184 33 0.17
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (184 bp):
ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAACCCACACGA
GTTGGTGGCACTCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTT
AGTGGCAGCCTTCAGTCCTAAAAGAGTCAGATGCATTTTCTTTGCAAAGCCCAC
Found at i:2482460 original size:38 final size:40
Alignment explanation
Indices: 2482418--2482525 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 40
2482408 GCACTTTTTA
2482418 GTCCTCAAAGAGCAGGACGCCTTTTCC-TC-TTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCCTTTTCCTTCTTTCCCCCTT
* **
2482456 GTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGC-C-T--TTTCCTTC-TTTCCCCCTT
*
2482501 GTCCTCAAAGAGCAGGACGCATTTT
1 GTCCTCAAAGAGCAGGACGCCTTTT
2482526 ATTTTCCTCT
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
38 19 0.33
39 1 0.02
40 1 0.02
41 3 0.05
42 5 0.09
43 3 0.05
45 26 0.45
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.32
Consensus pattern (40 bp):
GTCCTCAAAGAGCAGGACGCCTTTTCCTTCTTTCCCCCTT
Found at i:2482565 original size:42 final size:41
Alignment explanation
Indices: 2482469--2482580 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 41
2482459 CTCAAAGAGT
* * * * *
2482469 AGGACGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGC
1 AGGACGCATTTCATTT--TCCTTTT--CTTTGGTCCACAAAAAGC
*
2482514 AGGACGCATTTTATTTTCCTCTTTCTTTGGTCCACAAAAAGC
1 AGGACGCATTTCATTTTCCT-TTTCTTTGGTCCACAAAAAGC
*
2482556 AGGACGCATTTCGTTTTCCTTTTCT
1 AGGACGCATTTCATTTTCCTTTTCT
2482581 CCTTTATCCT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
41 5 0.09
42 33 0.57
43 3 0.05
44 3 0.05
45 14 0.24
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (41 bp):
AGGACGCATTTCATTTTCCTTTTCTTTGGTCCACAAAAAGC
Found at i:2482704 original size:46 final size:45
Alignment explanation
Indices: 2482413--2482716 Score: 246
Period size: 46 Copynumber: 7.0 Consensus size: 45
2482403 TGGTGGCACT
* *
2482413 TTTTAGTCCTCAAAGAGCAGGACGC----CTTTTCC-TC-TTCCC
1 TTTTAGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCC
** * *
2482452 CCTT-GTCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCC
1 TTTTAGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTT-CC
*
2482497 TTTT-GTCCTCAAAGAGCAGGACGCATTTTATTTTCC-TC-TTT-C
1 TTTTAGTCCTCAAAGAGCAGGACGCATTTCA-TTTCCTTCTTTTCC
* * * * *
2482539 -TTTGGTCCACAAAAAGCAGGACGCATTTCGTTTTCCTT-TTCTCC
1 TTTTAGTCCTCAAAGAGCAGGACGCATTTC-ATTTCCTTCTTTTCC
*
2482583 -TTTA-TCCTCAAAGAGTAGGACGC-TCTTCATTTCCTTCTTTTCCC
1 TTTTAGTCCTCAAAGAGCAGGACGCAT-TTCATTTCCTTCTTTT-CC
** *
2482627 TTTTAGTCAGCAAAGAGTAGGACGC-TCTTCATTTCCTTCTTTTCC
1 TTTTAGTCCTCAAAGAGCAGGACGCAT-TTCATTTCCTTCTTTTCC
* * *
2482672 TTTCTAGTCCTTAAAGAGCAGGACACATTTCATTTTCCTTTTTTT
1 TTT-TAGTCCTCAAAGAGCAGGACGCATTTCA-TTTCCTTCTTTT
2482717 TGTCCTCGAA
Statistics
Matches: 215, Mismatches: 29, Indels: 34
0.77 0.10 0.12
Matches are distributed among these distances:
38 19 0.09
39 2 0.01
41 3 0.01
42 42 0.20
43 27 0.13
44 11 0.05
45 38 0.18
46 61 0.28
47 12 0.06
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.39
Consensus pattern (45 bp):
TTTTAGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTCTTTTCC
Found at i:2483334 original size:61 final size:61
Alignment explanation
Indices: 2483229--2483449 Score: 282
Period size: 61 Copynumber: 3.6 Consensus size: 61
2483219 AGGTGTGGGG
* ** * * *
2483229 ACGAATTGGTGGCACCTTCCAGTCCTCAAAAAGCGGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
2483290 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * ** *
2483351 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
2483412 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2483450 TGCCTTTTCC
Statistics
Matches: 136, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
60 6 0.04
61 130 0.96
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2483522 original size:45 final size:42
Alignment explanation
Indices: 2483454--2483569 Score: 117
Period size: 45 Copynumber: 2.7 Consensus size: 42
2483444 CCAGGATGCC
* * * *
2483454 TTTTCCTCTTCCCTCTTGTCCTCAAAGAGAAAGTCGTACTTCA
1 TTTTCCTCTT-TCTTTTATCCTCAAAGAGAAAGGCGTACTTCA
* * *
2483497 -TTTCCTTCTTTTCCTTTTTATCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTCC-TC-TTT-C-TTTTATCCTCAAAGAGAAAGGCGTACTTCA
2483542 TTTTCCTCTTTCTTTTATCCTCAAAGAG
1 TTTTCCTCTTTCTTTTATCCTCAAAGAG
2483570 CAGGACGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
42 21 0.34
43 3 0.05
44 6 0.10
45 26 0.43
46 5 0.08
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.44
Consensus pattern (42 bp):
TTTTCCTCTTTCTTTTATCCTCAAAGAGAAAGGCGTACTTCA
Found at i:2483810 original size:40 final size:40
Alignment explanation
Indices: 2483712--2483814 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2483702 GCAGGACGTG
*
2483712 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2483753 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2483795 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2483815 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2484308 original size:61 final size:61
Alignment explanation
Indices: 2484203--2484509 Score: 323
Period size: 61 Copynumber: 5.0 Consensus size: 61
2484193 AGGTATGGGG
* ** * *
2484203 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAG-TAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2484264 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2484325 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2484386 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
2484447 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2484508 AC
1 AC
2484510 AAATTGGGGG
Statistics
Matches: 201, Mismatches: 41, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 7 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2484428 original size:122 final size:122
Alignment explanation
Indices: 2484206--2484509 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
2484196 TATGGGGACG
* * * * * ** *
2484206 AATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2484270 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2484328 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2484393 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2484450 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2484510 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2484931 original size:61 final size:60
Alignment explanation
Indices: 2484823--2485052 Score: 271
Period size: 61 Copynumber: 3.8 Consensus size: 60
2484813 AGGTATGGGG
* ** * * * * *
2484823 ACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGAC-GCCTTTTCTTTCAAAGCCCAC
* *
2484884 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCCTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTCAAAGCCCAC
* * * **
2484945 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC-TTTCAAAGCCCAC
* * *
2485006 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGATGCCTTTTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2485053 CTCTTCCCTC
Statistics
Matches: 142, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
60 7 0.05
61 135 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (60 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCAC
Found at i:2485112 original size:45 final size:45
Alignment explanation
Indices: 2485056--2485254 Score: 146
Period size: 45 Copynumber: 4.5 Consensus size: 45
2485046 CCTTTTCCTC
* *
2485056 TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * *
2485101 TTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCC-TC-T
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTT
* * * * * * *
2485145 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTCGTTT--TCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * *
2485186 TTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCATTTCCTTTTT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCATTTCCTTCTT
*
2485231 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
2485255 AGACACATTT
Statistics
Matches: 116, Mismatches: 26, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 24 0.21
43 23 0.20
44 6 0.05
45 38 0.33
46 18 0.16
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (45 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
Found at i:2485901 original size:61 final size:61
Alignment explanation
Indices: 2485796--2486102 Score: 314
Period size: 61 Copynumber: 5.0 Consensus size: 61
2485786 AGGTATGGGG
* ** * *
2485796 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAG-TAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2485857 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2485918 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2485979 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
2486040 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2486101 AC
1 AC
2486103 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
60 12 0.06
61 180 0.90
62 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2486021 original size:122 final size:122
Alignment explanation
Indices: 2485799--2486102 Score: 376
Period size: 122 Copynumber: 2.5 Consensus size: 122
2485789 TATGGGGACG
* * * * * ** *
2485799 AATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2485863 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * * *
2485921 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCATGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2485986 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2486043 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2486103 AAATTGGGGG
Statistics
Matches: 151, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
122 150 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2486521 original size:621 final size:620
Alignment explanation
Indices: 2485471--2486631 Score: 1853
Period size: 621 Copynumber: 1.9 Consensus size: 620
2485461 CAGCACCCAA
* *
2485471 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
* *
2485536 GTCAAGCATTAGAAAATCTCAAAACCTAGTAAGGAAAACCATAAAATCAAAAAACAAATTTTGAA
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAAGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
* *
2485601 TGCTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGTC
131 TGCTGTCCTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACGGACAAAATGGTGTC
* * *
2485666 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCAT
195 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCAC
* *
2485731 TTTGTTTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATTGAGGGGTCGAAAGGTATGGGG
260 TTTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGG
*
2485796 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACATCTTTTTCTTTCAAGGCCCACACGA
325 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGA
* * * * *
2485861 GTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTA
390 GTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTA
* * * * *
2485926 GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCATGAGTTGGTGG
455 GTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
2485991 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACC
520 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACC
2486056 TTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
585 TTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
* *
2486092 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
* *
2486157 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAAATTTG
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAAGGAAAACCATAAAATC--AAAAAAAAAAATTTG
* *
2486222 AATGTCAT-T-TTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTCTTTCACGGACAAAATGGT
129 AATG-C-TGTCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGT
* * * * *
2486284 GTCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCT
192 GTCTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCT
* * *
2486349 CACTTTGTCTGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATG
257 CACTTTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATG
* *
2486414 GGGACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGACATCTTTTTCTTTCCAA-GCCCAC
322 GGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTT-CAAGGCCCAC
*
2486478 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAA
386 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAA
** *
2486543 GTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTG
451 GTTAGTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTG
*
2486608 GTGGCACTTTTTAGTCCTCAAAGA
516 GTGGCACCTTTTAGTCCTCAAAGA
2486632 CCAGGATGCC
Statistics
Matches: 492, Mismatches: 43, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
621 445 0.90
622 3 0.01
623 41 0.08
624 2 0.00
625 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (620 bp):
AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
GTCAAGCATTAGAAAATCTCAAAACCTAGTAAGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
TGCTGTCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCT
TTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCACT
TTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGA
CGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAG
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAG
TGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
ACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCT
TTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2486522 original size:61 final size:61
Alignment explanation
Indices: 2486417--2486637 Score: 273
Period size: 61 Copynumber: 3.6 Consensus size: 61
2486407 AGGTATGGGG
* ** * * * *
2486417 ACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGACATCTTTTTCTTTCCAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
2486478 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * ** *
2486539 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
2486600 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2486638 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.04
61 129 0.96
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2486706 original size:45 final size:44
Alignment explanation
Indices: 2486642--2486759 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 44
2486632 CCAGGATGCC
* *
2486642 TTTTCCTC-TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGTACTTCA
* * *
2486685 -TTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTCC-TC-TTTCCCTTTTGTCCTCAAAGAGCAAGGCGTACTTCA
*
2486730 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCA
2486760 GGACGCATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
42 22 0.34
43 2 0.03
44 3 0.05
45 32 0.50
46 5 0.08
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAAGGCGTACTTCA
Found at i:2486874 original size:46 final size:44
Alignment explanation
Indices: 2486657--2487002 Score: 163
Period size: 42 Copynumber: 8.2 Consensus size: 44
2486647 CTCTTCCCTC
* * * * *
2486657 TTGTCCTCAAAGAGCAAGTCGTACTTCA-TTTCCTTCTTTTCCCTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTT-TTTTTCC-T
* * * * *
2486702 TTGTCCTCAAAGAGTAGGGCGTACTTT-ATTTTCC--TCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCA-TTTCATTTTCCTTTTTTTCCT
* * * *
2486744 TTATCCTCAAAGAGCAGGACGCATTTCGTTTTCC-ATTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTTCCT
* * *
2486787 TTGTCCTTAAAGTGCAGGATGC-TCTTCA-TTTCCTTTTTTTTCCT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTTCC-TTTTTTTCCT
* *
2486831 TCTAGTCCTCAAAGAGCAAGACACATTTCATTTTCCTTTTTTT-CT
1 T-T-GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTTCCT
** * *
2486876 TTGTTTTCAAAAAGCAGGACG-------TGTT-C--TTTTTCACT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTTC-CT
* *
2486911 TTGTCCTC-AAGAAGCAGGACAC-TTTCCTTTT-C-TTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACGCATTTCATTTTCCTTTTTTTCCT
*
2486952 TTGTCCTCAAGGAGC-GAGAC-CTATTTCATTTT-C---TTTTCCT
1 TTGTCCTCAAAGAGCAG-GACGC-ATTTCATTTTCCTTTTTTTCCT
2486992 TTGTCCTCAAA
1 TTGTCCTCAAA
2487003 AAGTGGGACA
Statistics
Matches: 235, Mismatches: 41, Indels: 55
0.71 0.12 0.17
Matches are distributed among these distances:
33 5 0.02
34 2 0.01
35 17 0.07
36 3 0.01
40 19 0.08
41 23 0.10
42 49 0.21
43 44 0.19
44 9 0.04
45 25 0.11
46 33 0.14
47 6 0.03
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.43
Consensus pattern (44 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTTCCT
Found at i:2486997 original size:40 final size:40
Alignment explanation
Indices: 2486899--2487001 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2486889 GCAGGACGTG
*
2486899 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2486940 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2486982 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2487002 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2487495 original size:61 final size:61
Alignment explanation
Indices: 2487390--2487696 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
2487380 AGGTATGGGG
* ** * *
2487390 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
2487451 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2487512 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2487573 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2487634 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2487695 AC
1 AC
2487697 AAATTGGGGG
Statistics
Matches: 201, Mismatches: 42, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 183 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2487615 original size:122 final size:122
Alignment explanation
Indices: 2487393--2487696 Score: 394
Period size: 122 Copynumber: 2.5 Consensus size: 122
2487383 TATGGGGACG
* * * * ** *
2487393 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2487457 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2487515 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2487580 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2487637 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2487697 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 153 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2488115 original size:61 final size:61
Alignment explanation
Indices: 2488010--2488230 Score: 273
Period size: 61 Copynumber: 3.6 Consensus size: 61
2488000 AGGTATGGGG
* ** * * * *
2488010 ACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGGCATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
2488071 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * ** *
2488132 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
2488193 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2488231 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.04
61 129 0.96
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2488299 original size:45 final size:45
Alignment explanation
Indices: 2488243--2488440 Score: 137
Period size: 45 Copynumber: 4.5 Consensus size: 45
2488233 CCTTTTCCTC
* *
2488243 TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * * *
2488288 TTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCC-AC-T
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTT
* * * * * * *
2488332 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTCGTTT--TCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* *
2488373 TTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCATTTCCTT-TT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCATTTCCTTCTT
*
2488417 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
2488441 AGACACATTT
Statistics
Matches: 115, Mismatches: 26, Indels: 24
0.70 0.16 0.15
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 24 0.21
43 25 0.22
44 9 0.08
45 45 0.39
46 5 0.04
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (45 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
Found at i:2488369 original size:42 final size:41
Alignment explanation
Indices: 2488292--2488376 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
2488282 CTTCTTTTCC
* * * *
2488292 CTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCCACTTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCA-TTT
*
2488334 CTTTTATCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCATTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTT-ATTTTCCATTT
2488375 CT
1 CT
2488377 CCTTTGTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.22
42 29 0.78
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (41 bp):
CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCATTT
Found at i:2488536 original size:41 final size:41
Alignment explanation
Indices: 2488491--2488593 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 41
2488481 GCAGGACGTG
2488491 TTCTTTTTCACTTTGTCCTCAAGAAGCAG-GACACT-TTTC-TT
1 TTCTTTTTC-CTTTGTCCTCAAGAAG-AGAGAC-CTATTTCATT
* *
2488532 TTCTTTTTTCCTTTGTCCTCAAGGAGTGAGACCTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
2488574 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2488594 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 20 0.36
41 25 0.45
42 11 0.20
ACGTcount: A:0.17, C:0.24, G:0.12, T:0.48
Consensus pattern (41 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
Found at i:2489087 original size:61 final size:61
Alignment explanation
Indices: 2488982--2489288 Score: 314
Period size: 61 Copynumber: 5.0 Consensus size: 61
2488972 AGGTATGGGG
* ** * *
2488982 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2489043 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAA-AGCCCAC
* * * * * * * * **
2489104 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2489165 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2489226 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2489287 AC
1 AC
2489289 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
60 13 0.07
61 180 0.90
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2489207 original size:122 final size:122
Alignment explanation
Indices: 2488985--2489288 Score: 378
Period size: 122 Copynumber: 2.5 Consensus size: 122
2488975 TATGGGGACG
* * * * ** *
2488985 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * *
2489049 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAA-AGCCCACGCA
* * * ** * **
2489107 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTTACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2489172 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2489229 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2489289 AAATTGGGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
121 1 0.01
122 150 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2489705 original size:621 final size:620
Alignment explanation
Indices: 2488657--2489817 Score: 1860
Period size: 621 Copynumber: 1.9 Consensus size: 620
2488647 CAGCACCCAA
* *
2488657 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
* *
2488722 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAAATTTTGAA
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
* * *
2488787 TGCTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGTC
131 TGCTATCCTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACGGACAAAATGGTGTC
* * *
2488852 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCAT
195 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCAC
* *
2488917 TTTGTTTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATTGAGGGGTCGAAAGGTATGGGG
260 TTTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGG
*
2488982 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGA
325 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGA
* * * *
2489047 GTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAGGCAAGTT
390 GTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAA-AGCCCACGCAAGTT
* * * **
2489111 AGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTTACGAGTTGGTG
454 AGTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTG
2489176 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
519 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
2489241 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
584 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
* *
2489278 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
*
2489343 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAAATTTG
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATC--AAAAAAAAAAATTTG
* *
2489408 AATG-TCATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTCCTTCATGGACAAAATGGTG
129 AATGCT-ATCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTG
* * * * *
2489471 TCTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTC
193 TCTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTC
* * * *
2489536 ACTTTGTCTGGGTTAATTTTTCGGTATCCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGG
258 ACTTTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGG
* * * *
2489601 GGACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGGCATCTTTTTCTTTCAAAGCCCACAT
323 GGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACAC
2489666 GAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGT
388 GAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGT
** *
2489731 TAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGT
453 TAGTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGT
*
2489796 GGCACTTTTTAGTCCTCAAAGA
518 GGCACCTTTTAGTCCTCAAAGA
2489818 CCAGGATGCC
Statistics
Matches: 492, Mismatches: 44, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
620 1 0.00
621 447 0.91
622 1 0.00
623 43 0.09
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (620 bp):
AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
TGCTATCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCT
TTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCACT
TTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGA
CGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAG
TGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
ACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCT
TTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2489708 original size:61 final size:61
Alignment explanation
Indices: 2489603--2489823 Score: 273
Period size: 61 Copynumber: 3.6 Consensus size: 61
2489593 AGGTATGGGG
* ** * * * *
2489603 ACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGGCATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
2489664 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * ** *
2489725 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
2489786 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2489824 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.04
61 129 0.96
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2489892 original size:45 final size:45
Alignment explanation
Indices: 2489836--2490034 Score: 137
Period size: 45 Copynumber: 4.5 Consensus size: 45
2489826 CCTTTTCCTC
* *
2489836 TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * * *
2489881 TTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCC-AC-T
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTT
* * * * * * *
2489925 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTCGTTT--TCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * *
2489966 TTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCATTTCCTTTTT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCATTTCCTTCTT
*
2490011 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
2490035 AGACACATTT
Statistics
Matches: 115, Mismatches: 27, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 24 0.21
43 23 0.20
44 6 0.05
45 37 0.32
46 18 0.16
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (45 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
Found at i:2489962 original size:42 final size:41
Alignment explanation
Indices: 2489885--2489969 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
2489875 CTTCTTTTCC
* * * *
2489885 CTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCCACTTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCA-TTT
*
2489927 CTTTTATCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCATTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTT-ATTTTCCATTT
2489968 CT
1 CT
2489970 CCTTTGTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.22
42 29 0.78
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (41 bp):
CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCATTT
Found at i:2490130 original size:41 final size:41
Alignment explanation
Indices: 2490085--2490187 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 41
2490075 GCAGGACGTG
2490085 TTCTTTTTCACTTTGTCCTCAAGAAGCAG-GACACT-TTTC-TT
1 TTCTTTTTC-CTTTGTCCTCAAGAAG-AGAGAC-CTATTTCATT
* *
2490126 TTCTTTTTTCCTTTGTCCTCAAGGAGTGAGACCTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
2490168 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2490188 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 20 0.36
41 25 0.45
42 11 0.20
ACGTcount: A:0.17, C:0.24, G:0.12, T:0.48
Consensus pattern (41 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
Found at i:2490681 original size:61 final size:61
Alignment explanation
Indices: 2490576--2490882 Score: 314
Period size: 61 Copynumber: 5.0 Consensus size: 61
2490566 AGGTATGGGG
* ** * *
2490576 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2490637 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAA-AGCCCAC
* * * * * * * * **
2490698 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2490759 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2490820 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2490881 AC
1 AC
2490883 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
60 13 0.07
61 180 0.90
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2490801 original size:122 final size:122
Alignment explanation
Indices: 2490579--2490882 Score: 378
Period size: 122 Copynumber: 2.5 Consensus size: 122
2490569 TATGGGGACG
* * * * ** *
2490579 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * *
2490643 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAA-AGCCCACGCA
* * * ** * **
2490701 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTTACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2490766 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2490823 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2490883 AAATTGGGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
121 1 0.01
122 150 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2491306 original size:61 final size:61
Alignment explanation
Indices: 2491209--2491409 Score: 269
Period size: 61 Copynumber: 3.3 Consensus size: 61
2491199 AATTGGTGCC
* * * * *
2491209 AGTCCTTAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTT
* * * **
2491270 AGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTTTCACCTTTT
1 AGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTT
* *
2491331 AGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGTCTTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCACCTTTT
*
2491392 AGTCCTCAAAGACCAGGA
1 AGTCCTCAAAGAGCAGGA
2491410 TGCCTTTTCC
Statistics
Matches: 121, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
60 10 0.08
61 111 0.92
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (61 bp):
AGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTT
Found at i:2491344 original size:613 final size:615
Alignment explanation
Indices: 2490251--2491403 Score: 1803
Period size: 613 Copynumber: 1.9 Consensus size: 615
2490241 CAGCACCCAA
* *
2490251 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
* *
2490316 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAAATTTTGAA
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
* * * *
2490381 TGCTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGTC
131 TGCTATCCTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACAGACAAAATGGTGTC
* * *
2490446 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCAT
195 TTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCAC
* *
2490511 TTTGTTTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATTGAGGGGTCGAAAGGTATGGGG
260 TTTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGG
*
2490576 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGA
325 ACGAATTGGTGG---C--CCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGA
* * * *
2490641 GTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACACGCAGGCAAGTTA
385 GTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAACACCCACGCAAGTTA
* * * **
2490706 GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTTACGAGTTGGTGG
450 GTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
2490771 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACC
515 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACC
2490836 TTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
580 TTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
* *
2490872 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
*
2490937 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAAATTTGA
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATC-AAAAAAAAAAATTTGA
*
2491002 ATG-TCATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTCCTTCACAGACAAAATGGTGT
130 ATGCT-ATCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACAGACAAAATGGTGT
* * * * *
2491065 CTTTTGTTTTTGCCCTATTCCTGATACTCAGAAACAGCCAAAGAGGGGCAGTTGTAGACACCTCA
194 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCA
* * * *
2491130 CTTTGTCTGGGTTAATTTTTCGGTAACCCAAAGCATTTCTAGATGGAGGGGTTGAAAGGTATGGG
259 CTTTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
* * *
2491195 GACGAATTGGT-G-CCAGTCCTTAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTG
324 GACGAATTGGTGGCCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTG
*
2491258 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAA-AGCCCACGCAAGTTAGTT
389 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAACA-CCCACGCAAGTTAGTG
* *
2491322 TCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
453 GCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
2491387 TTTTTAGTCCTCAAAGA
518 CTTTTAGTCCTCAAAGA
2491404 CCAGGATGCC
Statistics
Matches: 486, Mismatches: 43, Indels: 14
0.90 0.08 0.03
Matches are distributed among these distances:
612 1 0.00
613 178 0.37
619 1 0.00
620 154 0.32
621 109 0.22
622 43 0.09
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (615 bp):
AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTGAA
TGCTATCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACAGACAAAATGGTGTCT
TTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCACT
TTGTCTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGA
CGAATTGGTGGCCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGT
GGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAACACCCACGCAAGTTAGTGGCA
CCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTT
TTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCAT
TCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2491478 original size:45 final size:45
Alignment explanation
Indices: 2491422--2491620 Score: 137
Period size: 45 Copynumber: 4.5 Consensus size: 45
2491412 CCTTTTCCTC
* *
2491422 TTCCCTCTTGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * * *
2491467 TTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCC-AC-T
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTCTT
* * * * * * *
2491511 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTCGTTT--TCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
* * *
2491552 TTCTCC-TTTGTCCTTAAAGTGCAGGAT-GCT-CTTCATTTCCTTTTT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TCG-TACTTCATTTCCTTCTT
*
2491597 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
2491621 AGACACATTT
Statistics
Matches: 115, Mismatches: 27, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 6 0.05
42 24 0.21
43 23 0.20
44 6 0.05
45 37 0.32
46 18 0.16
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (45 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTCTT
Found at i:2491548 original size:42 final size:41
Alignment explanation
Indices: 2491471--2491555 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
2491461 CTTCTTTTCC
* * * *
2491471 CTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCCACTTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCA-TTT
*
2491513 CTTTTATCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCATTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTT-ATTTTCCATTT
2491554 CT
1 CT
2491556 CCTTTGTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.22
42 29 0.78
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (41 bp):
CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCATTT
Found at i:2491772 original size:40 final size:41
Alignment explanation
Indices: 2491671--2491773 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 41
2491661 GCAGGACGTG
2491671 TTCT-TTTTCACTTTGTCCTCAAGAAGCAGGACACTTTTCAT
1 TTCTCTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTTCAT
* * *
2491712 TTCTTTTTTCCTTTGTCCTCAAGGAG-TGAGAC-CTATTTCAT
1 TTCTCTTTTCCTTTGTCCTCAAGAAGCAG-GACACT-TTTCAT
2491753 TT-TCTTTTCCTTTGTCCTCAA
1 TTCTCTTTTCCTTTGTCCTCAA
2491774 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
40 21 0.38
41 30 0.54
42 5 0.09
ACGTcount: A:0.17, C:0.24, G:0.12, T:0.47
Consensus pattern (41 bp):
TTCTCTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTTCAT
Found at i:2492267 original size:61 final size:61
Alignment explanation
Indices: 2492162--2492468 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
2492152 AGGTATGGGG
* ** * *
2492162 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
2492223 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2492284 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2492345 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2492406 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2492467 AC
1 AC
2492469 AAATTGGGGG
Statistics
Matches: 201, Mismatches: 42, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 183 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2492387 original size:122 final size:122
Alignment explanation
Indices: 2492165--2492468 Score: 394
Period size: 122 Copynumber: 2.5 Consensus size: 122
2492155 TATGGGGACG
* * * * ** *
2492165 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2492229 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2492287 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2492352 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2492409 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2492469 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 153 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2492887 original size:61 final size:61
Alignment explanation
Indices: 2492782--2493002 Score: 273
Period size: 61 Copynumber: 3.6 Consensus size: 61
2492772 AGGTATGGGG
* ** * * * *
2492782 ACGAATTGGTGGCACCTTCCAGTCCTTAAAGAGCGGGGCATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* *
2492843 ATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * ** *
2492904 GCAAGTTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
* *
2492965 ACGAGTTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2493003 TGCCTTTTCC
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
60 6 0.04
61 129 0.96
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2493070 original size:43 final size:43
Alignment explanation
Indices: 2493022--2493211 Score: 138
Period size: 43 Copynumber: 4.4 Consensus size: 43
2493012 CTCTTCCCTC
*
2493022 TTGTCCTCAAAGAGCAAGTCGTACTTCATTTCCTTTTTTCCTT
1 TTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTTTTTCCTT
* * * **
2493065 TTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCC-ACTTT-CTT
1 TTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCCTTTTTTCCTT
* * * * * * *
2493107 TTATCCTCAAAGAGCAGGACGCATTTCGTTTTCCATTTCTCC-T
1 TTGTCCTCAAAGAGCAGGTCGTACTTC-ATTTCCTTTTTTCCTT
* *
2493150 TTGTCCTTAAAGTGCAGGAT-GCT-CTTCATTTCCTTTTTTTCCCTT
1 TTGTCCTCAAAGAGCAGG-TCG-TACTTCATTTCC-TTTTTT-CCTT
*
2493195 CTAGTCCTCAAAGAGCA
1 -TTGTCCTCAAAGAGCA
2493212 AGAACATTTC
Statistics
Matches: 109, Mismatches: 28, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
42 34 0.31
43 53 0.49
44 8 0.07
45 1 0.01
46 13 0.12
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.41
Consensus pattern (43 bp):
TTGTCCTCAAAGAGCAGGTCGTACTTCATTTCCTTTTTTCCTT
Found at i:2493139 original size:42 final size:41
Alignment explanation
Indices: 2493062--2493146 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
2493052 TCCTTTTTTC
* * * *
2493062 CTTTTGTCCTCAAAGAGTAGGGCGTACTTTATTTTCCACTTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCA-TTT
*
2493104 CTTTTATCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCATTT
1 CTTTTATCCTCAAAGAGCAGGACGCACTTT-ATTTTCCATTT
2493145 CT
1 CT
2493147 CCTTTGTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.22
42 29 0.78
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (41 bp):
CTTTTATCCTCAAAGAGCAGGACGCACTTTATTTTCCATTT
Found at i:2493305 original size:41 final size:41
Alignment explanation
Indices: 2493260--2493362 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 41
2493250 GCAGGACGTG
2493260 TTCTTTTTCACTTTGTCCTCAAGAAGCAG-GACACT-TTTC-TT
1 TTCTTTTTC-CTTTGTCCTCAAGAAG-AGAGAC-CTATTTCATT
* *
2493301 TTCTTTTTTCCTTTGTCCTCAAGGAGTGAGACCTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
2493343 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2493363 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 20 0.36
41 25 0.45
42 11 0.20
ACGTcount: A:0.17, C:0.24, G:0.12, T:0.48
Consensus pattern (41 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
Found at i:2493852 original size:61 final size:61
Alignment explanation
Indices: 2493747--2494053 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
2493737 AGGTATGGGG
* ** * * *
2493747 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2493808 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2493869 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2493930 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
2493991 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2494052 AC
1 AC
2494054 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2493972 original size:122 final size:122
Alignment explanation
Indices: 2493750--2494053 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
2493740 TATGGGGACG
* * * * ** *
2493750 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2493814 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2493872 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2493937 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
2493994 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAACCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2494054 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Done.