Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 16 of 16
Found at i:2494467 original size:617 final size:612
Alignment explanation
Indices: 2493435--2494578 Score: 1912
Period size: 617 Copynumber: 1.9 Consensus size: 612
2493425 ACCAAAAAAG
*
2493435 CCCACACAAGTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCAA
1 CCCACACAAGTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCAA
2493500 GCTTAGAAATTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCACTTTT
66 GCTTAGAAATTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCACTTTT
2493565 TACAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCC
131 TACAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCC
* * * * *
2493630 CTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTCGGGCTA
196 CTATTCCTGATACTCAAAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCATTTTGTCCAGGCTA
2493695 ATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTGGTGGC
261 ATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTGGTGGC
*
2493760 ACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGGTGGCACCT
326 ACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCT
* ** * * * *
2493825 TTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAGCTTTTA
391 TTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTTA
* * *
2493890 GTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCC
456 GTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCC
2493955 TCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATTCCTCAA
521 TCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATTCCTCAA
2494020 AGAGCAAGACGCCTTTTCTTTTCAAAC
586 AGAGCAAGACGCCTTTTCTTTTCAAAC
* * *
2494047 CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
1 CCCACAC-AAGTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCA
2494112 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAATTTGAATGTCAT
65 AGC-TTAG-AAAT-TCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCA-
*
2494176 CTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTT
126 CTTTTTAC-AGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTC
* *
2494241 TTTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTTGTCC
190 TTTGCCCTATTCCTGATACTCAAAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCATTTTGTCC
* * * *
2494306 AGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATGAATT
255 AGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATT
* *
2494371 GGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTGGTG
320 GGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGTG
* **
2494436 GCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTTTCAC
385 GCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCAC
* * *
2494501 CTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTT
450 CTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
2494566 TAGTCCTCAAAGA
515 TAGTCCTCAAAGA
2494579 CCAGGATGCC
Statistics
Matches: 491, Mismatches: 35, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
612 7 0.01
613 56 0.11
614 4 0.01
615 24 0.05
616 37 0.08
617 363 0.74
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (612 bp):
CCCACACAAGTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCAA
GCTTAGAAATTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATGTCACTTTT
TACAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCTTTGCC
CTATTCCTGATACTCAAAAACAACCAAAGAGAGGCAGCTGTAGAAACCTCATTTTGTCCAGGCTA
ATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTGGTGGC
ACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCT
TTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTAGTGGCACCTTTTA
GTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCC
TCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATTCCTCAA
AGAGCAAGACGCCTTTTCTTTTCAAAC
Found at i:2494469 original size:61 final size:61
Alignment explanation
Indices: 2494369--2494584 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
2494359 TGGGGATGAA
** * * *
2494369 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
2494430 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
2494491 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2494552 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2494585 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2494661 original size:45 final size:43
Alignment explanation
Indices: 2494597--2494795 Score: 133
Period size: 45 Copynumber: 4.5 Consensus size: 43
2494587 CCTTTTCCTC
*
2494597 TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCTTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGT-GTACTTCATTT-TTTCTT
* *
2494642 TTCCCTTTTGTCCTCAAAGAGTAGGGTGTACTTTATTTTCTTC-T
1 TTCCCTTTTGTCCTCAAAGAGCA-GGTGTACTTCATTTT-TTCTT
* * * * * * *
2494686 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTC-GTTTTCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGG-TGTACTTCATTTTTTCTT
* *
2494727 TTCTCC-TTTGTCCTTAAAGTGCAGGATGCT-CTTCATTTCCTTT-TT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TG-TACTTCATTT--TTTCTT
*
2494772 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
2494796 AGACACATTT
Statistics
Matches: 118, Mismatches: 23, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
40 2 0.02
41 8 0.07
42 21 0.18
43 21 0.18
44 9 0.08
45 39 0.33
46 18 0.15
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.43
Consensus pattern (43 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTGTACTTCATTTTTTCTT
Found at i:2494944 original size:40 final size:40
Alignment explanation
Indices: 2494846--2494948 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2494836 GCAGGACGTG
*
2494846 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2494887 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2494929 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2494949 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2495443 original size:61 final size:61
Alignment explanation
Indices: 2495338--2495644 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
2495328 AGGTATGGGG
* ** *
2495338 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2495399 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTTTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2495460 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2495521 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2495582 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2495643 AC
1 AC
2495645 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 44, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
60 11 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2495563 original size:122 final size:122
Alignment explanation
Indices: 2495341--2495644 Score: 394
Period size: 122 Copynumber: 2.5 Consensus size: 122
2495331 TATGGGGACG
* * * * **
2495341 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAAGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * * *
2495405 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTTTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2495463 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2495528 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2495585 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2495645 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 153 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2496061 original size:61 final size:61
Alignment explanation
Indices: 2495961--2496176 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
2495951 TGGGGATGAA
** * * *
2495961 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
2496022 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
2496083 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2496144 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2496177 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2496483 original size:41 final size:41
Alignment explanation
Indices: 2496438--2496552 Score: 121
Period size: 40 Copynumber: 2.8 Consensus size: 41
2496428 GCAGGACGTG
*
2496438 TTCTTTTTCACTTTGTCCTCAAGAAGTAGGACAC-TTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGTAGGACACATTTCATT
* *
2496479 TTCTTTTTTCCTTTGTCCTCAAGGAG-CGAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGTAG-GACAC-ATTTCATT
* *
2496521 TTC-TTTTCCTTTGTCCTCAAAAAGTGGGACAC
1 TTCTTTTTCCTTTGTCCTCAAGAAGTAGGACAC
2496553 CCCTTGCATT
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
40 24 0.39
41 23 0.37
42 15 0.24
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (41 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGTAGGACACATTTCATT
Found at i:2497034 original size:61 final size:61
Alignment explanation
Indices: 2496929--2497235 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
2496919 AGGTATGGGG
* ** * *
2496929 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * *
2496990 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * * *
2497051 GCAAGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2497112 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2497173 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2497234 AC
1 AC
2497236 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 44, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
60 12 0.06
61 181 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2497204 original size:122 final size:122
Alignment explanation
Indices: 2496932--2497235 Score: 405
Period size: 122 Copynumber: 2.5 Consensus size: 122
2496922 TATGGGGACG
* * *
2496932 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
2496995 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * * * *
2497054 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
2497119 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2497176 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
2497236 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
120 2 0.01
121 6 0.04
122 145 0.95
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2497652 original size:61 final size:61
Alignment explanation
Indices: 2497547--2497853 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
2497537 AGGTATGGGG
* ** * * *
2497547 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2497608 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2497669 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2497730 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
2497791 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAACCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2497852 AC
1 AC
2497854 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2497772 original size:122 final size:122
Alignment explanation
Indices: 2497550--2497853 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
2497540 TATGGGGACG
* * * * ** *
2497550 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2497614 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2497672 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2497737 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
2497794 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAACCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2497854 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2497783 original size:618 final size:618
Alignment explanation
Indices: 2496604--2498379 Score: 3113
Period size: 618 Copynumber: 2.9 Consensus size: 618
2496594 TAGCACCCAA
* * * *
2496604 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
2496669 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAA
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAAA-TTTGAA
* * * * *
2496734 TG-CTGTCCTTTTATATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGT
129 TGTC-ATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTT-CTTCACGGACAAAATGGTGT
2496798 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
192 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
2496863 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
257 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
2496928 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
322 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
2496993 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
387 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
*
2497058 AGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
452 AGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
2497123 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
517 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
2497188 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
582 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
2497225 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
2497290 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
2497355 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
131 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
2497420 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
196 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
2497485 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
261 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
2497550 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
326 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
2497615 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
391 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
2497680 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
456 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
2497745 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
521 CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
2497810 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
586 CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
2497843 AAAACCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
2497908 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
*
2497973 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTT
131 TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
* * * * * *
2498038 TGTTTTTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTT
196 TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
* * * * * *
2498103 GTCCAGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATG
261 GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
* * *
2498168 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTT
326 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
* ** * * * * *
2498233 GGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTT
391 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
* * * ** * *
2498298 TCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
456 GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
*
2498363 TTTTTAGTCCTCAAAGA
521 CTTTTAGTCCTCAAAGA
2498380 CCAGGATGCC
Statistics
Matches: 1110, Mismatches: 44, Indels: 5
0.96 0.04 0.00
Matches are distributed among these distances:
618 950 0.86
619 42 0.04
620 11 0.01
621 107 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (618 bp):
AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
TCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTTT
TGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTT
GTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACG
AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTT
GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTG
GCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCAC
CTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTT
CATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2498270 original size:61 final size:61
Alignment explanation
Indices: 2498170--2498385 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
2498160 TGGGGATGAA
** * * *
2498170 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
2498231 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
2498292 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2498353 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2498386 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2498462 original size:45 final size:43
Alignment explanation
Indices: 2498398--2498596 Score: 133
Period size: 45 Copynumber: 4.5 Consensus size: 43
2498388 CCTTTTCCTC
*
2498398 TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCTTTCTT
1 TTCCCTTTTGTCCTCAAAGAGCAGGT-GTACTTCATTT-TTTCTT
* *
2498443 TTCCCTTTTGTCCTCAAAGAGTAGGGTGTACTTTATTTTCTTC-T
1 TTCCCTTTTGTCCTCAAAGAGCA-GGTGTACTTCATTTT-TTCTT
* * * * * * *
2498487 TT--CTTTTATCCTCAAAGAGCAGGACGCATTTC-GTTTTCCAT
1 TTCCCTTTTGTCCTCAAAGAGCAGG-TGTACTTCATTTTTTCTT
* *
2498528 TTCTCC-TTTGTCCTTAAAGTGCAGGATGCT-CTTCATTTCCTTT-TT
1 TTC-CCTTTTGTCCTCAAAGAGCAGG-TG-TACTTCATTT--TTTCTT
*
2498573 TTCCCTTCTAGTCCTCAAAGAGCA
1 TTCCCTT-TTGTCCTCAAAGAGCA
2498597 AGACACATTT
Statistics
Matches: 118, Mismatches: 23, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
40 2 0.02
41 8 0.07
42 21 0.18
43 21 0.18
44 9 0.08
45 39 0.33
46 18 0.15
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.43
Consensus pattern (43 bp):
TTCCCTTTTGTCCTCAAAGAGCAGGTGTACTTCATTTTTTCTT
Found at i:2498745 original size:40 final size:40
Alignment explanation
Indices: 2498647--2498749 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2498637 GCAGGACGTG
*
2498647 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2498688 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2498730 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2498750 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2499243 original size:61 final size:61
Alignment explanation
Indices: 2499138--2499444 Score: 330
Period size: 61 Copynumber: 5.0 Consensus size: 61
2499128 AGGTATGGGG
* ** *
2499138 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2499199 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTTTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2499260 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2499321 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2499382 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2499443 AC
1 AC
2499445 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 44, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
60 11 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2499363 original size:122 final size:122
Alignment explanation
Indices: 2499141--2499444 Score: 394
Period size: 122 Copynumber: 2.5 Consensus size: 122
2499131 TATGGGGACG
* * * * **
2499141 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAAGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * * *
2499205 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTTTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2499263 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2499328 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2499385 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2499445 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 153 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2499860 original size:61 final size:61
Alignment explanation
Indices: 2499760--2499975 Score: 272
Period size: 61 Copynumber: 3.5 Consensus size: 61
2499750 TGGGGATGAA
** * * *
2499760 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * * *
2499821 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** *
2499882 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2499943 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2499976 TGCCTTTTCC
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 6 0.05
61 124 0.95
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2500832 original size:61 final size:61
Alignment explanation
Indices: 2500727--2501033 Score: 314
Period size: 61 Copynumber: 5.0 Consensus size: 61
2500717 AGGTATGGGG
* ** * * *
2500727 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2500788 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2500849 GCAAGTTAGTGGTAGCTTTTAGTCCTAAAAGAG-TCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCT-GGACGTCTTTTTC-TTTCAAAGCCCAC
2500910 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
2500971 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2501032 AC
1 AC
2501034 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
60 13 0.07
61 179 0.90
62 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2501002 original size:122 final size:122
Alignment explanation
Indices: 2500730--2501033 Score: 398
Period size: 122 Copynumber: 2.5 Consensus size: 122
2500720 TATGGGGACG
* * *
2500730 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * * *
2500793 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * * *
2500852 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGTC-GGATGCCTTTTCTTTTCAAAGCCCTCACGAGT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAG-CAGGATGCCTTTTCTTTTCAAAGCCCACACGAGT
2500916 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2500974 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
2501034 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
120 2 0.01
121 7 0.05
122 143 0.93
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2501450 original size:61 final size:61
Alignment explanation
Indices: 2501345--2501651 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
2501335 AGGTATGGGG
* ** * * *
2501345 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2501406 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2501467 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2501528 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
2501589 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAACCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2501650 AC
1 AC
2501652 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2501570 original size:122 final size:122
Alignment explanation
Indices: 2501348--2501651 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
2501338 TATGGGGACG
* * * * ** *
2501348 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2501412 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2501470 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2501535 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
2501592 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAACCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2501652 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2501581 original size:618 final size:619
Alignment explanation
Indices: 2500402--2502175 Score: 3099
Period size: 618 Copynumber: 2.9 Consensus size: 619
2500392 TAGCACCCAA
* * * *
2500402 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
* *
2500467 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAATTTTGAA
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAAAATTTGAA
* * * *
2500532 TG-CTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGT
130 TGTC-ATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTT-CTTCACGGACAAAATGGTGT
2500596 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
193 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
2500661 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
258 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
2500726 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
323 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
2500791 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
388 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTT
*
2500856 AGTGGTAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
453 AGTGGCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
2500921 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
518 GCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCAC
2500986 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
583 CTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
2501023 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAAGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
2501088 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAAAAAATTTGAAT
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAAATTTGAAT
2501152 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTT
131 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTT
2501217 TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
196 TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
2501282 TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
261 TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
2501347 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
326 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
2501412 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
391 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
*
2501477 GGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
456 GGCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
2501542 CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
521 CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
2501607 TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
586 TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
*
2501641 AAAACCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
2501706 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAAATTTGAAT
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAAATTTGAAT
*
2501771 GTCATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTCCTTCACGGACAAAATGGTGTCTT
131 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTT
* * * * *
2501835 TTGTTTTTGCCCTATTCCTGATACTCA-AAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTT
196 TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
* * * * *
2501899 TGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGAT
261 TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
* * *
2501964 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGT
326 GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
* ** * * * *
2502029 TGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGT
391 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
** * * * * *
2502094 TTCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTC-AAGCCCACACGAGTTGGTGGCA
456 GGCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
*
2502158 CTTTTTAGTCCTCAAAGA
521 CCTTTTAGTCCTCAAAGA
2502176 CCAGGATGCC
Statistics
Matches: 1106, Mismatches: 45, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
616 38 0.03
617 248 0.22
618 611 0.55
619 102 0.09
620 1 0.00
621 106 0.10
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (619 bp):
AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAAATTTGAAT
GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTTCTTCACGGACAAAATGGTGTCTT
TTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTT
TGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGAC
GAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGT
TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGT
GGCAGCTTTTAGTCCTAAAAGAGTCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCA
CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2502067 original size:61 final size:61
Alignment explanation
Indices: 2501967--2502181 Score: 263
Period size: 61 Copynumber: 3.5 Consensus size: 61
2501957 TGGGGATGAA
** * * *
2501967 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* * * *
2502028 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
* ** * *
2502089 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACG-CCTTTTCTTTTC-AAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCACACGAG
* *
2502149 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA
2502182 TGCCTTTTCC
Statistics
Matches: 129, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
60 44 0.34
61 85 0.66
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACACGAG
Found at i:2502257 original size:44 final size:44
Alignment explanation
Indices: 2502186--2502304 Score: 147
Period size: 44 Copynumber: 2.8 Consensus size: 44
2502176 CCAGGATGCC
* *
2502186 TTTTCCTC-TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * *
2502229 -TTTCTTTCTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTC-CTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
*
2502273 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCAGG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGG
2502305 ATTGCATTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 23 0.35
43 2 0.03
44 36 0.55
45 4 0.06
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
Found at i:2502540 original size:40 final size:40
Alignment explanation
Indices: 2502442--2502544 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2502432 GCAGGACGTG
*
2502442 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2502483 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2502525 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2502545 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2503039 original size:61 final size:61
Alignment explanation
Indices: 2502934--2503239 Score: 323
Period size: 61 Copynumber: 5.0 Consensus size: 61
2502924 AGGTATGGGG
* ** * *
2502934 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2502995 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAA-AGCCCAC
* * * * * * * *
2503056 GCAAGTT-GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
*
2503116 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2503177 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTC-TTTCAAAGCCCAC
2503238 AC
1 AC
2503240 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 39, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
59 7 0.04
60 45 0.22
61 142 0.71
62 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2503156 original size:121 final size:122
Alignment explanation
Indices: 2502937--2503239 Score: 396
Period size: 121 Copynumber: 2.5 Consensus size: 122
2502927 TATGGGGACG
* * * ** *
2502937 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * *
2503001 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACA-CGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAA-AGCCCACGCA
* * * ** * *
2503059 AGTT-GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2503123 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* *
2503180 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2503240 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
120 1 0.01
121 102 0.66
122 51 0.33
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTGGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2503691 original size:615 final size:619
Alignment explanation
Indices: 2502608--2503762 Score: 1851
Period size: 615 Copynumber: 1.9 Consensus size: 619
2502598 CAGCACCCAA
* * *
2502608 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAAGCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
*
2502673 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAAATTTTGAA
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAAAATTTGAA
* * *
2502738 TGCTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTTCCTTCACGGACAAAATGGTGT
131 TGCTATCCTTTTACAAGCATTTAGCTAAGCATTC--TTTTTTTTCCTTCACGGACAAAATGGTGT
* *
2502803 CTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCA
194 CTTTTGTCTTTGCCCTATTCCTGAAACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAACCTCA
*
2502868 TTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
259 TTTTGTCCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
*
2502933 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACG
324 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACG
* ** *
2502998 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACACGCAGGCAAGTT
389 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAACACGCACGCAAGTT
* * * *
2503063 GTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGG
454 GTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
2503128 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACC
519 CACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACC
2503193 TTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
584 TTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
* *
2503229 AAAGCCCACACAAATTGGGGGCAAAGC-TTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
*
2503293 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT-AAAAAA-AAAATTTGAA
66 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAAAATTTGAA
*
2503356 TG-TCATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTCCTTCACAGGACAAAATGGTGT
131 TGCT-ATCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCAC-GGACAAAATGGTGT
* * * *
2503419 CTTTTGTTTTTGCCCTATTCCTGAAACTCAGAAACAGCCA-AGAGGGGCAGCTGTAGACACCTCA
194 CTTTTGTCTTTGCCCTATTCCTGAAACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAACCTCA
* * *
2503483 TTTTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGG
259 TTTTGTCCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGG
* * *
2503548 GATGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATG
324 GACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACG
2503613 AGTTGGTGGCACC-TTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAA-A-GCCGACGCAAG
389 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAACACG-C-ACGCAAG
** *
2503675 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
452 TT-GTGGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGG
*
2503740 TGGCACTTTTTAGTCCTCAAAGA
516 TGGCACCTTTTAGTCCTCAAAGA
2503763 CCAGGATGCC
Statistics
Matches: 492, Mismatches: 37, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
612 1 0.00
613 2 0.00
614 42 0.09
615 247 0.50
616 51 0.10
617 1 0.00
618 37 0.08
619 6 0.01
620 81 0.16
621 24 0.05
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (619 bp):
AAAGCCCACACAAATTGGGGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAACAAAATTTGAA
TGCTATCCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCT
TTTGTCTTTGCCCTATTCCTGAAACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAACCTCATT
TTGTCCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGA
CGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAAGCCCACACGAG
TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAACACGCACGCAAGTTGT
GGCACCTTTTAGTCCTAAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
CCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTT
TCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2503726 original size:61 final size:61
Alignment explanation
Indices: 2503554--2503777 Score: 256
Period size: 61 Copynumber: 3.7 Consensus size: 61
2503544 TGGGGATGAA
** * ** *
2503554 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTT-TCTTTCAAAGCCCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* * * * *
2503615 TTGGTGGCACC-TTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTT-AAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
* **
2503675 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* * *
2503736 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGATGCCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2503778 CTCTTCCCTC
Statistics
Matches: 134, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
60 46 0.34
61 87 0.65
62 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2504829 original size:61 final size:61
Alignment explanation
Indices: 2504522--2504837 Score: 323
Period size: 61 Copynumber: 5.2 Consensus size: 61
2504512 TATGGGGACG
** * * *
2504522 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTT-TCTTTCAAGGCCCACACG
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTCT-TTTCAAAGCCCACACA
* * * * **
2504583 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTCTTTT-AACGCGCAGGCA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTCTTTTCAAAGCCCACACA
* * * * * * * * * *
2504643 AGTTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACG
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTCTTTTCAAAGCCCACACA
* *
2504704 AGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCTGGACGTCTTTT-TCTTTCAAAGCCCACGCA
1 AATTGGTGGCACC-TTTTAGTCCTCAAAGAGCTGGACGTCTTTTCT-TTTCAAAGCCCACACA
* * ** *
2504766 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTCTTTTCAAAGCCCACACA
*
2504827 AATTGGGGGCA
1 AATTGGTGGCA
2504838 AAGCTTTCCA
Statistics
Matches: 208, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
60 47 0.23
61 108 0.52
62 53 0.25
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (61 bp):
AATTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTCTTTTCAAAGCCCACACA
Found at i:2505250 original size:616 final size:614
Alignment explanation
Indices: 2504192--2505966 Score: 2995
Period size: 616 Copynumber: 2.9 Consensus size: 614
2504182 TAGCACCCAA
* * * *
2504192 AAAGCCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
2504257 GTCAAGCATTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATCAAAAAAAAAAATTTTGA
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAAT--AAAAAAAAAA-TTTGA
* * *
2504322 ATG-CTGTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTG
128 ATGTC-AT-CTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACGGACAAAATGGTG
2504386 TCTTTTGTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTTGTAGAAATCT
190 TCTTTTGTC-TTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGC-TGTAGAAATCT
*
2504451 CATTTTGTTTGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATG
253 CATTTTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATG
*
2504516 GGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTTCTTTCAAGGCCCACA
318 GGGACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACA
2504581 CGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTCTTTTAACGCGCAGGCAAGT
383 CGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTC-TTTAACGCGCAGGCAAGT
2504646 TAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGT
447 TAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGT
2504711 GGCACCTTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGC
512 GGCACCTTTTTAGTCCTCAAAGAGCTGG-CGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGC
2504776 ACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
576 ACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTC
2504815 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
2504880 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
66 GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
2504945 TCATCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTT
131 TCATCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTT
2505010 GTCTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGT
196 GTCTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGT
2505075 TCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAA
261 TCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAA
2505140 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGG
326 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGG
*
2505205 TGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTAACGCGCAGGCAAGTTAGTGGCA
391 TGGCACCTTTTAGTGCTCAAAGAGCTGGACGTC-TTTTCTTTAACGCGCAGGCAAGTTAGTGGTA
2505270 GCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACC-T
455 GCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTT
2505334 TTTAGTCCTCAAAGAGCTGGCGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCAT
520 TTTAGTCCTCAAAGAGCTGGCGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCAT
2505399 TCCTCAAAGAGCAAGACGCCTTTTCTTTTC
585 TCCTCAAAGAGCAAGACGCCTTTTCTTTTC
2505429 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
1 AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
*
2505494 GTCAAGCTTTAGAAAATCTCAAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAATTTTG-AT
66 GTCAAGCTTTAGAAAATCTC-AAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAAT
2505558 GTCATCTTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
130 GTCATC-TTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTT
* * * * * * *
2505623 TTGTTTTTTGCCCTATTCCTGAAACTCAGAAACAGCCAAAGAGGGGCAGCTGTAGACACCTCATT
194 TTG--TCTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATT
* * * *
2505688 TTGTCCGGGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGA
257 TTGTTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGA
* * * *
2505753 TGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAG
322 CGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGA-
* ** * *
2505818 GTTGGTTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTCTTTAAAGC-CGACGCAAGTTA
386 GTTGG-TGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTCTTTAACGCGC-AGGCAAGTTA
* * * * * *
2505882 GT-TTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTG
449 GTGGT-AGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
2505946 GCA-CTTTTTAGTCCTCAAAGA
513 GCACCTTTTTAGTCCTCAAAGA
2505967 CCAGGATGCC
Statistics
Matches: 1102, Mismatches: 39, Indels: 27
0.94 0.03 0.02
Matches are distributed among these distances:
614 168 0.15
615 122 0.11
616 268 0.24
617 224 0.20
618 138 0.13
619 55 0.05
620 9 0.01
621 11 0.01
623 107 0.10
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (614 bp):
AAAGCCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAG
GTCAAGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAAATTTGAATG
TCATCTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTT
GTCTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGT
TCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAA
TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGG
TGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTCTTTAACGCGCAGGCAAGTTAGTGGTAG
CTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTT
TTAGTCCTCAAAGAGCTGGCGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATT
CCTCAAAGAGCAAGACGCCTTTTCTTTTC
Found at i:2505289 original size:60 final size:61
Alignment explanation
Indices: 2505135--2505439 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
2505125 AGGTATGGGG
* ** * * *
2505135 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * *
2505196 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTT-AACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2505256 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2505317 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGG-CGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** *
2505377 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2505438 AC
1 AC
2505440 AAATTGGGGG
Statistics
Matches: 199, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
59 6 0.03
60 90 0.45
61 103 0.52
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2505389 original size:121 final size:121
Alignment explanation
Indices: 2505138--2505439 Score: 403
Period size: 121 Copynumber: 2.5 Consensus size: 121
2505128 TATGGGGACG
* * *
2505138 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACAT-CTTTTTC-TTTCAAGGCCCACACGAG
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGG--ATGCCTTTTCTTTTCAAAGCCCACACGAG
* * * *
2505201 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTAACGCGCAGGCA
64 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTAAAGCCCACGCA
* * * * * * *
2505259 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
2505324 GGTGGCACCTTTTAGTCCTCAAAGAGCTGG-CGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTT-AAAGCCCACGCA
* * *
2505380 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
1 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACAC
2505440 AAATTGGGGG
Statistics
Matches: 154, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
119 2 0.01
120 19 0.12
121 133 0.86
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (121 bp):
AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTAAAGCCCACGCA
Found at i:2505964 original size:61 final size:61
Alignment explanation
Indices: 2505757--2505981 Score: 249
Period size: 61 Copynumber: 3.7 Consensus size: 61
2505747 TGGGGATGAA
** * ** *
2505757 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTT-TCTTTCAAAGCCCACATGAGG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGA-G
* * * * *
2505819 TTGGTTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTC-TTT-AAAGCCGACGCAAG
1 TTGG-TGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* **
2505879 TTAGTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* * *
2505940 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGATGCCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2505982 CTCTTCCCTC
Statistics
Matches: 136, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
59 34 0.25
60 7 0.05
61 56 0.41
62 7 0.05
63 32 0.24
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2506117 original size:41 final size:41
Alignment explanation
Indices: 2506034--2506117 Score: 109
Period size: 41 Copynumber: 2.0 Consensus size: 41
2506024 TTTCTTTTCC
* *
2506034 CTTTTGTCCTCAAAGAGTAGGCGCACTTTATTTTCCTCTTT
1 CTTTTATCCTCAAAGAGTAGGCGCACTTTATTTTCCTATTT
*
2506075 CTTTTATCCTCAAAGAGTAGGACGCA-TTTCGTTTTCC-ATTT
1 CTTTTATCCTCAAAGAGTAGG-CGCACTTT-ATTTTCCTATTT
2506116 CT
1 CT
2506118 CCTTTGTCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 28 0.74
42 10 0.26
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (41 bp):
CTTTTATCCTCAAAGAGTAGGCGCACTTTATTTTCCTATTT
Found at i:2506292 original size:41 final size:42
Alignment explanation
Indices: 2506229--2506333 Score: 130
Period size: 41 Copynumber: 2.5 Consensus size: 42
2506219 AAGCAGACGT
*
2506229 TTTTCTTTTTCACTTTGTCCTCAAGAAGC-AGGACACT-TTTC-C
1 TTTTCTTTTTC-CTTTGTCCTCAAGAAGCGA-GAC-CTATTTCAA
*
2506271 TTTTCTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCAA
1 TTTTCTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCAA
2506313 TTTTC-TTTTCC-TTGTCCTCAA
1 TTTTCTTTTTCCTTTGTCCTCAA
2506334 AAAGTGGGAC
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
40 12 0.21
41 29 0.50
42 17 0.29
ACGTcount: A:0.17, C:0.26, G:0.11, T:0.46
Consensus pattern (42 bp):
TTTTCTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTTCAA
Found at i:2506828 original size:60 final size:61
Alignment explanation
Indices: 2506729--2507040 Score: 301
Period size: 60 Copynumber: 5.1 Consensus size: 61
2506719 GGGAGACGAA
** * * * *
2506729 TTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACACAAG
* * * * **
2506790 -TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTC-TTTTCTTTTAACGCGCAGGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACACAAG
* * * * * * * *
2506849 TTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCACACAAG
* *
2506910 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAAGCCCACGCAAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTC-AAAGCCCACACAAG
* * ** * *
2506972 TTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAA-CCCACACAAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCACACAAG
*
2507032 TTGGGGGCA
1 TTGGTGGCA
2507041 AAGCTTTCCA
Statistics
Matches: 204, Mismatches: 41, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
59 18 0.09
60 81 0.40
61 54 0.26
62 51 0.25
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACACAAG
Found at i:2506948 original size:121 final size:122
Alignment explanation
Indices: 2506727--2507028 Score: 360
Period size: 123 Copynumber: 2.5 Consensus size: 122
2506717 TGGGGAGACG
* * * * ** *
2506727 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2506791 GGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTC-TTTTCTTT-TAACGCGCAGGCA
65 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAAGCCCACGCA
* * * ** * *
2506847 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAG-T
2506912 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAAGCCCACGCA
65 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAAGCCCACGCA
* * *
2506970 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAA-CCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2507029 AAATTGGGGG
Statistics
Matches: 151, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
120 49 0.32
121 36 0.24
122 14 0.09
123 52 0.34
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTG
GTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAAGCCCACGCA
Found at i:2507441 original size:60 final size:61
Alignment explanation
Indices: 2507377--2507550 Score: 212
Period size: 61 Copynumber: 2.9 Consensus size: 61
2507367 GAGCGGGACA
*
2507377 TCTTTTTCTTTCAAAGCCCACATGAGTTGGTTGGCAC-TTTAGTCCTCAAAGAGCACGACG
1 TCTTTTTCTTTCAAAGCCCACACGAGTTGGTTGGCACTTTTAGTCCTCAAAGAGCACGACG
* * * * * * *
2507437 TCTTTTTCTTTAAAAGCCCACGCAAGTTCGTT-TCACCTTTTAGTCCTCAAAAGAGTAGGACG
1 TCTTTTTCTTTCAAAGCCCACACGAGTTGGTTGGCA-CTTTTAGTCCTC-AAAGAGCACGACG
*
2507499 -CCTTTTCTTTCAAAGCCCACACGAGTTGG-TGGCACTTTTTAGTCCTCAAAGA
1 TCTTTTTCTTTCAAAGCCCACACGAGTTGGTTGGCAC-TTTTAGTCCTCAAAGA
2507551 CCAGGATGCC
Statistics
Matches: 95, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
59 2 0.02
60 35 0.37
61 47 0.49
62 11 0.12
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (61 bp):
TCTTTTTCTTTCAAAGCCCACACGAGTTGGTTGGCACTTTTAGTCCTCAAAGAGCACGACG
Found at i:2507507 original size:61 final size:60
Alignment explanation
Indices: 2507345--2507565 Score: 187
Period size: 60 Copynumber: 3.6 Consensus size: 60
2507335 GGATGAATTG
** * * * * ** *
2507345 GTGGCACCTTCCAGTCCTTC-AAGAGCGGGACATCTTTTTCTTTCAAAGCCCACATGAGTTG
1 GTGGCACCTTTTAGTCC-TCAAAGAGCAGGAC-GCCTTTTCTTTAAAAGCCCACACAAGTTC
* * *
2507406 GTTGGCA-C-TTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTAAAAGCCCACGCAAGTTC
1 G-TGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTAAAAGCCCACACAAGTTC
** * * * *
2507466 GTTTCACCTTTTAGTCCTCAAAAGAGTAGGACGCCTTTTCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCTTTTAGTCCTC-AAAGAGCAGGACGCCTTTTCTTTAAAAGCCCACACAAGTTC
* * *
2507527 GTGGCACTTTTTAGTCCTCAAAGACCAGGATGCCTTTTC
1 GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2507566 CTCTCCCTCT
Statistics
Matches: 129, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
59 5 0.04
60 57 0.44
61 51 0.40
62 16 0.12
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (60 bp):
GTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTAAAAGCCCACACAAGTTC
Found at i:2507657 original size:44 final size:45
Alignment explanation
Indices: 2507569--2507678 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 45
2507559 CCTTTTCCTC
* *
2507569 TCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCATTTCTTTCTTT
1 TCCCTCTTGTCCTCAAAGAGCAGGGCGTACTTCATTTCTCTCTTT
* * *
2507614 TCCCTTTTGTCCTC-AAGAGTAGGGCGTACTTTATTT-TC-CTCTT
1 TCCCTCTTGTCCTCAAAGAGCAGGGCGTACTTCATTTCTCTCT-TT
* *
2507657 T--CTTTTATCCTCAAAGAGCAGG
1 TCCCTCTTGTCCTCAAAGAGCAGG
2507679 ACACATTTCG
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 10 0.18
42 10 0.18
43 4 0.07
44 19 0.34
45 13 0.23
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.41
Consensus pattern (45 bp):
TCCCTCTTGTCCTCAAAGAGCAGGGCGTACTTCATTTCTCTCTTT
Found at i:2507790 original size:46 final size:44
Alignment explanation
Indices: 2507569--2507918 Score: 148
Period size: 42 Copynumber: 8.4 Consensus size: 44
2507559 CCTTTTCCTC
* ** * *
2507569 TCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA-TTTCTTTCTTT
1 TCCCT-TTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTT-TTT
* * *
2507614 TCCCTTTTGTCCTC-AAGAGTAGGGCGTAC-TTT-ATTTTCC-TCTT
1 TCCC-TTTGTCCTCAAAGAGCAGGAC--ACATTTCATTTTCCTTTTT
* * * * *
2507657 T-CTTTTATCCTCAAAGAGCAGGACACATTTCGTTTTCCATTTC
1 TCCCTTTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
* * **
2507700 T-CCTTTGTCCTTAAAGTGCAGGATGC-TCTTCA-TTTCCTTTTTT
1 TCCCTTTGTCCTCAAAGAGCAGGACACAT-TTCATTTTCC-TTTTT
*
2507743 TCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCATTTTCCTTTTT
1 TCCCTT-T-GTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
** * * *
2507789 T--CTTTGTTTTCAAAAAGCAGG----A---CGTGTT-C-TTTT
1 TCCCTTTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
* *
2507822 TCACTTTGTCCTC-AAGAAGCAGGACAC-TTTCCTTTT-CTTTTT
1 TCCCTTTGTCCTCAAAG-AGCAGGACACATTTCATTTTCCTTTTT
*
2507864 T-CCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTTT-C--TTT
1 TCCCTTTGTCCTCAAAGAGCAG-GACAC-ATTTCATTTTCCTTTTT
2507904 T-CCTTTGTCCTCAAA
1 TCCCTTTGTCCTCAAA
2507919 AAGTGGGACA
Statistics
Matches: 232, Mismatches: 43, Indels: 65
0.68 0.13 0.19
Matches are distributed among these distances:
33 5 0.02
34 3 0.01
35 18 0.08
38 1 0.00
40 21 0.09
41 32 0.14
42 50 0.22
43 33 0.14
44 18 0.08
45 19 0.08
46 26 0.11
47 6 0.03
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.43
Consensus pattern (44 bp):
TCCCTTTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
Found at i:2507858 original size:35 final size:34
Alignment explanation
Indices: 2507779--2507858 Score: 79
Period size: 35 Copynumber: 2.3 Consensus size: 34
2507769 CACATTTCAT
** ** *
2507779 TTTCCTTTTTTCTTTGTTTTCAAAAAGCAGGACG
1 TTTCCTTTTCACTTTGTCCTCAAAAAGCAGGACC
* *
2507813 TGTTCTTTTTCACTTTGTCCTCAAGAAGCAGGACAC
1 T-TTCCTTTTCACTTTGTCCTCAAAAAGCAGGAC-C
2507849 TTTCCTTTTC
1 TTTCCTTTTC
2507859 TTTTTTCCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
34 1 0.03
35 34 0.94
36 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.45
Consensus pattern (34 bp):
TTTCCTTTTCACTTTGTCCTCAAAAAGCAGGACC
Found at i:2507913 original size:40 final size:40
Alignment explanation
Indices: 2507815--2507917 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2507805 GCAGGACGTG
*
2507815 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2507856 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2507898 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2507918 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2508530 original size:122 final size:121
Alignment explanation
Indices: 2508308--2508610 Score: 365
Period size: 122 Copynumber: 2.5 Consensus size: 121
2508298 TATGGGGACG
* * * * ** *
2508308 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TTCTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTT-TTCAAAGCCCACACGAGT
* * * * * *
2508372 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTC-TTGTCTTTCAAAGCCCACGCA
* * * ** * *
2508430 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2508495 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTGTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTGTCTTTCAAAGCCCACGCA
* * * *
2508551 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAACCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2508611 AAATTGGGGG
Statistics
Matches: 151, Mismatches: 29, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
121 65 0.43
122 84 0.56
123 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (121 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTGTCTTTCAAAGCCCACGCA
Found at i:2508564 original size:60 final size:60
Alignment explanation
Indices: 2508308--2508622 Score: 297
Period size: 61 Copynumber: 5.2 Consensus size: 60
2508298 TATGGGGACG
** * * * *
2508308 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTTCTTCAAGGCCCACACG
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTCT-TTCAAAGCCCACACA
* * * * * * **
2508369 AGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTC-TTTTCTTTCAAAGCCCACACA
* * * * * * * * *
2508430 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACG
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTC-TTTCAAAGCCCACACA
* * * *
2508491 AGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTGTCTTTCAAAGCCCACGCA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTCTTTCAAAGCCCACACA
* * * * *
2508551 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAACCCACACA
1 AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTC-TTTCAAAGCCCACACA
*
2508612 AATTGGGGGCA
1 AATTGGTGGCA
2508623 AGCTTTCCAA
Statistics
Matches: 204, Mismatches: 47, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
60 55 0.27
61 144 0.71
62 5 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.29
Consensus pattern (60 bp):
AATTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTCTTTCAAAGCCCACACA
Found at i:2509142 original size:61 final size:61
Alignment explanation
Indices: 2508929--2509151 Score: 238
Period size: 60 Copynumber: 3.7 Consensus size: 61
2508919 ATGGGATGAA
** * ** * *
2508929 TTGGTGGCACCTTCCAGTCCTCAAAGAGCGGGACATCTTTT-TCTTTCAAAGCACA-ATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCT-TTTCAAAGCCCACACGAG
* * * * *
2508989 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTT-AAAGCCGACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAG
* **
2509050 TTAGTTTCACC-TTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
* * *
2509110 TTGGTGGCACTTTTTAGTCCTCAAAGACCAGGATGCCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2509152 CTCTTCCCTC
Statistics
Matches: 132, Mismatches: 26, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
59 10 0.08
60 76 0.58
61 45 0.34
62 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAG
Found at i:2509245 original size:45 final size:44
Alignment explanation
Indices: 2509147--2509370 Score: 124
Period size: 45 Copynumber: 5.2 Consensus size: 44
2509137 CCAGGATGCC
* * * * *
2509147 TTTTCCTC-TTCCCTCTTGTCTTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
2509190 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGCACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * *
2509235 TTTTCCTCTTT--CTTTTATCCTC-AAGAGTAGGACGCATTTCG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
2509276 TTTTCC-ATTTCTCC-TTTGTCCTTAAAGTGCAGGATGCTCTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
* * * * * *
2509319 --TTCCTTTTTTTCCCTTCTAGTCCTCAAAGAGCAAGACACATTTCA
1 TTTTCC--TCTTTCCCTT-TTGTCCTCAAAGAGTAGGACGCACTTCA
2509364 TTTTCCT
1 TTTTCCT
2509371 TTTTTTCTTT
Statistics
Matches: 135, Mismatches: 31, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
40 3 0.02
41 25 0.19
42 21 0.16
43 18 0.13
44 8 0.06
45 52 0.39
46 4 0.03
47 4 0.03
ACGTcount: A:0.17, C:0.27, G:0.13, T:0.43
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA
Found at i:2509500 original size:40 final size:40
Alignment explanation
Indices: 2509402--2509504 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 40
2509392 GCAGGACGTG
*
2509402 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCATT
*
2509443 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATT
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTCATT
2509485 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2509505 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 15 0.27
ACGTcount: A:0.17, C:0.26, G:0.12, T:0.46
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCATT
Found at i:2510090 original size:61 final size:61
Alignment explanation
Indices: 2509894--2510192 Score: 295
Period size: 61 Copynumber: 5.0 Consensus size: 61
2509884 TGGGGACGAA
** ** * *
2509894 TTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTC-TTTC--AGGCC-CACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACAAG
* * * * **
2509951 TTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTT-AACGCGCAGGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACG-CCTTTTCTTTTCAAAGCCCACACAAG
* * * * * * * *
2510012 TTAGTGGTAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACAAG
* * * *
2510073 TTGGTGGCACCTCTTAGTCCTCAAAGAGCTGGACGTCTTTT-TTTTCAAAGCCCACGCAAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACAAG
* * **
2510133 TTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACAA
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACAA
2510193 ATTAGGGGCA
Statistics
Matches: 190, Mismatches: 45, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
57 31 0.16
58 5 0.03
59 3 0.02
60 62 0.33
61 89 0.47
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGCCTTTTCTTTTCAAAGCCCACACAAG
Found at i:2510606 original size:61 final size:61
Alignment explanation
Indices: 2510501--2510807 Score: 321
Period size: 61 Copynumber: 5.0 Consensus size: 61
2510491 AGGTATGGGG
* ** * * *
2510501 ACGAATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * *
2510562 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * * * *
2510623 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2510684 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * ** * *
2510745 GCAAATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAACCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTC-TTTCAAAGCCCAC
2510806 AC
1 AC
2510808 AAATTGGGGG
Statistics
Matches: 200, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
60 12 0.06
61 182 0.91
62 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2510726 original size:122 final size:122
Alignment explanation
Indices: 2510504--2510807 Score: 385
Period size: 122 Copynumber: 2.5 Consensus size: 122
2510494 TATGGGGACG
* * * * ** *
2510504 AATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGT
* * * * *
2510568 TGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCA
65 TGGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * ** * *
2510626 AGTTAGTGGCAGCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTT
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
2510691 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
66 GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * *
2510748 AATTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAACCCCACAC
1 AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACAC
2510808 AAATTGGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
122 152 0.99
123 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (122 bp):
AATTAGTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2510920 original size:617 final size:614
Alignment explanation
Indices: 2509571--2511322 Score: 2976
Period size: 617 Copynumber: 2.9 Consensus size: 614
2509561 CACCCAAAAG
* * * *
2509571 CCCACACAAGTTGGTGGCAAACCTTTCCAAAGCCTAAAGTAACCAACACCTATCTAAGGAGGTCA
1 CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
*
2509636 AGCATTAGAAAATCTCAAAACCTAGTA-GGAAAACCATAAAATCAAAAAAAAAATTTGAATG-CT
66 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAA-C-AAAAAAAAATTTGAATGTC-
* * * *
2509699 GTCCTTTTACATGCATTTAGCTAATCATTCTTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTT
128 ATCTTTTTACAAGCATTTAGCTAAGCATTC-TTTTTTTTCCTTCACGGACAAAATGGTGTCTTTT
2509764 GTCTTTGCCCTATTCCTGATACTCAGAAA-AACCATAGAGAGGCAGCTGTAGAAATCTCATTTTG
192 GTCTTTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTG
*
2509828 TTCGGGCTAATTTTTTGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGA
257 TTCGGGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGA
*
2509893 ATTGGTGGCACCTTCCAGTCCTCAAAGAGCTGGACATCTTTTCTTTC-AGG-CCCACGAGTTGGT
322 ATTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTCTTTCAAGGCCCCACGAGTTGGT
*
2509956 GGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGTA
387 GGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCA
*
2510021 GCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTC
452 GCTTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTT
2510086 TTAGTCCTCAAAGAGCTGGACGTCTTTTTTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATT
517 TTAGTCCTCAAAGAGCTGGACGTCTTTTTTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATT
*
2510151 CCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAG
582 CCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAC
*
2510184 CCCACACAAATTAGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
1 CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
*
2510249 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAATAAAAAAAAATTTGAATGTCATC
66 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAACAAAAAAAAATTTGAATGTCATC
2510314 TTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCT
131 TTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCT
2510379 TTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTCG
196 TTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTCG
2510444 GGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTG
261 GGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTG
2510509 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTTCTTTCAAGGCCCACACGAGTTGGTGG
326 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATC-TTTTCTTTCAAGGCCC-CACGAGTTGGTGG
2510574 CACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAGC
389 CACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAGC
2510639 TTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTT
454 TTTTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTT
2510704 AGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATTC
519 AGTCCTCAAAGAGCTGGACGTCTTTTT-TTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATTC
2510769 CTCAAAGAGCAAGACGCCTTTTCTTTTCAAAC
583 CTCAAAGAGCAAGACGCCTTTTCTTTTCAAAC
2510801 CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
1 CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
2510866 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAACAAAAAAAAATTTGAATGTCATC
66 AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAACAAAAAAAAATTTGAATGTCATC
*
2510931 TTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTTT
131 TTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCT
* * * * * *
2510996 TTGCCCTATTCCTGATACTCAAAAACAGCCAAAGAGAGGCAGCTGTAGACACCTCATTTTGTCCG
196 TTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTCG
* * * *
2511061 GGTTAATTTTTCGGTAACCCAAAGCATTACTAGATGGAGGGGTTGAAAGGTATGGGGATGAATTG
261 GGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTG
* * * *
2511126 GTGGCACCTTCTAGTCCTCAAAGAGCGGGACATCTTTTCTTTCAAAGCCCCATGAGTTGGTGGCA
326 GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTCTTTCAAGGCCCCACGAGTTGGTGGCA
* ** * * * * ** *
2511191 CCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAGTTCGTTTCACCTT
391 CCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAGCTT
* ** * * *
2511256 TTAGTCCTCAAAGAGTAGGACGCCTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAG
456 TTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAG
2511320 TCC
521 TCC
2511323 AAAGACCAGG
Statistics
Matches: 1082, Mismatches: 49, Indels: 15
0.94 0.04 0.01
Matches are distributed among these distances:
611 63 0.06
612 179 0.17
613 96 0.09
614 53 0.05
615 96 0.09
616 183 0.17
617 412 0.38
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (614 bp):
CCCACACAAATTGGGGGCAAAGCTTTCCAAAGCCTACAGTAACCAACACCTATCTAAGGAGGTCA
AGCTTTAGAAAATCTCAAAACCTAGTAGGGAAAACCATAAAACAAAAAAAAATTTGAATGTCATC
TTTTTACAAGCATTTAGCTAAGCATTCTTTTTTTTCCTTCACGGACAAAATGGTGTCTTTTGTCT
TTGCCCTATTCCTGATACTCAGAAACAACCATAGAGAGGCAGCTGTAGAAATCTCATTTTGTTCG
GGCTAATTTTTCGGTAACCCAAAGCATTACTACATGGAGGGGTCGAAAGGTATGGGGACGAATTG
GTGGCACCTTCCAGTCCTCAAAGAGCAGGACATCTTTTCTTTCAAGGCCCCACGAGTTGGTGGCA
CCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAGGCAAGTTAGTGGCAGCTT
TTAGTCCTAAAAGAGCCGGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAG
TCCTCAAAGAGCTGGACGTCTTTTTTTTCAAAGCCCACGCAAATTGGTGGCACCTTTCATTCCTC
AAAGAGCAAGACGCCTTTTCTTTTCAAAC
Found at i:2511318 original size:60 final size:60
Alignment explanation
Indices: 2511123--2511342 Score: 257
Period size: 60 Copynumber: 3.7 Consensus size: 60
2511113 TGGGGATGAA
* * ** *
2511123 TTGGTGGCACCTTCTAGTCCTCAAAGAGCGGGACATCTTTTCTTTCAAAGCCC-CATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCACACGAG
* * * * *
2511182 TTGGTGGCACCTTTTAGTCCTCAAAGAGCACGACGTCTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTCTTTCAAAGCCCACACGAG
* ** *
2511243 TTCGTTTCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCACACGAG
* * *
2511303 TTGGTGGCACTTTTTAGT-C-CAAAGACCAGGATGCCTTTTC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTC
2511343 CTCTTCCCTC
Statistics
Matches: 133, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
58 18 0.14
59 32 0.24
60 50 0.38
61 33 0.25
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (60 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCACACGAG
Found at i:2511410 original size:45 final size:44
Alignment explanation
Indices: 2511338--2511544 Score: 144
Period size: 42 Copynumber: 4.7 Consensus size: 44
2511328 CCAGGATGCC
* *
2511338 TTTTCCTC-TTCCCTCTTGTCCTCAAAGAGCAGGTCGTACTTCA
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * *
2511381 -TTTCTTTCTTTTCCCTTTTGTCCTCAAAGAGTAGGGCGTACTTTA
1 TTTTC-CTC-TTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * * * *
2511426 TTTTCCTCTTT--CTTTTATCCTCAAAGAGCAGGACGCATTTCG
1 TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
* * *
2511468 TTTTCC-ATTTCTCC-TTTGTCCTTAAAGTGCAGGATGC-T-CTTCA
1 TTTTCCTCTTTC-CCTTTTGTCCTCAAAGAGCAGG--GCGTACTTCA
* *
2511511 -TTTCCTTTTTTACCCTTCTAGTCCTCAAAGAGCA
1 TTTTCC-TCTTT-CCCTT-TTGTCCTCAAAGAGCA
2511545 AGACACATTT
Statistics
Matches: 125, Mismatches: 25, Indels: 25
0.71 0.14 0.14
Matches are distributed among these distances:
41 3 0.02
42 39 0.31
43 21 0.17
44 9 0.07
45 36 0.29
46 17 0.14
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (44 bp):
TTTTCCTCTTTCCCTTTTGTCCTCAAAGAGCAGGGCGTACTTCA
Found at i:2511681 original size:42 final size:40
Alignment explanation
Indices: 2511595--2511697 Score: 115
Period size: 41 Copynumber: 2.5 Consensus size: 40
2511585 GCAGGACGTG
2511595 TTCTTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 TTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCCTT
*
2511636 TTCTTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCAC-T
1 TTC-TTTTTCCTTTGTCCTCAAGAAGCAG-GACAC--TTTC-CTT
2511678 TTC-TTTTCCTTTGTCCTCAA
1 TTCTTTTTCCTTTGTCCTCAA
2511698 AAAGTGGGAC
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
40 19 0.34
41 22 0.39
42 14 0.25
43 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.45
Consensus pattern (40 bp):
TTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCCTT
Found at i:2512208 original size:61 final size:61
Alignment explanation
Indices: 2512075--2512422 Score: 366
Period size: 61 Copynumber: 5.8 Consensus size: 61
2512065 AGGTATGGGG
* ** * * *
2512075 ACGAATTGGTGGCACCTTCCAGTCCTC-AAGAGCAGGACATCTTTTTCTTTCAAGGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
* * * * *
2512135 ACGAGTTGGTGGCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTAACGCGCAG
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
* * * * * * * *
2512196 GCAAGTTAGTGGCAGCTTTTAGTCCTAAAAGAGTC-GGATG-CCTTTTCTTTTCAAAGCCCTC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAG-CAGGACGTCTTTTTCTTTT-AAAGCCCAC
* * *
2512257 ACGAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
* * * * * *
2512317 GCAAGTTGGTGGCACCTTTCATTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTT-AAAGCCCAC
*
2512378 ACGAGTTGGTGGCA-CTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
2512423 CGTCTTCCCC
Statistics
Matches: 233, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
59 1 0.00
60 104 0.45
61 127 0.55
62 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAAAGCCCAC
Found at i:2512297 original size:121 final size:121
Alignment explanation
Indices: 2512083--2512422 Score: 427
Period size: 121 Copynumber: 2.8 Consensus size: 121
2512073 GGACGAATTG
* * * ** *
2512083 GTGGCACCTTCCAGTCCT-CAAGAGCAGGACATCTTTT-TCTTTCAAGGCCCACACGAGTTGGTG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCT-TTTCAAAGCCCACACGAGTTGGTG
* * * *
2512146 GCACCTTTTAGTGCTCAAAGAGCTGGACGTCTTTTTCTTTTA-ACGCGCAGGCAAGTTA
65 GCACC-TTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATA-GCCCACGCAAGTTA
* * * * *
2512204 GTGGCAGCTTTTAGTCCTAAAAGAGTC-GGATGCCTTTTCTTTTCAAAGCCCTCACGAGTTGGTG
1 GTGGCACCTTTCAGTCCTAAAAGAG-CAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTG
*
2512268 GCACCTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCACGCAAGTTG
65 GCACCTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCACGCAAGTTA
* *
2512325 GTGGCACCTTTCATTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
1 GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
2512390 CACTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
66 CACCTTTAGTCCTCAAAGAGCTGGACGTCTTTT
2512423 CGTCTTCCCC
Statistics
Matches: 190, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
120 1 0.01
121 146 0.77
122 41 0.22
123 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (121 bp):
GTGGCACCTTTCAGTCCTAAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
CACCTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCATAGCCCACGCAAGTTA
Found at i:2512538 original size:42 final size:44
Alignment explanation
Indices: 2512491--2512590 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 44
2512481 CCTAAAGAAC
2512491 AGGACGCATCTTATTTTTCCTCTT-T-CTTTGTCCTCAAAAAGT
1 AGGACGCATCTTATTTTTCCTCTTCTCCTTTGTCCTCAAAAAGT
* * * *
2512533 AGGACGCAT-TT-GTTTTCCTTTTCTCCTTTGTCCTCGAAGAGT
1 AGGACGCATCTTATTTTTCCTCTTCTCCTTTGTCCTCAAAAAGT
2512575 AGGACGC-TCTTCATTT
1 AGGACGCATCTT-ATTT
2512591 CTTTCTTTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
40 9 0.19
41 4 0.08
42 33 0.69
44 2 0.04
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (44 bp):
AGGACGCATCTTATTTTTCCTCTTCTCCTTTGTCCTCAAAAAGT
Found at i:2512619 original size:46 final size:46
Alignment explanation
Indices: 2512562--2512671 Score: 157
Period size: 46 Copynumber: 2.4 Consensus size: 46
2512552 TTTCTCCTTT
* * *
2512562 GTCCTCGAAGAGTAGGACGCTCTTCATTTCTTTCTTTTCCCTCATG
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
** *
2512608 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTTGTA
1 GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
*
2512654 GTCCTTAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
2512672 ACATTTTATT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (46 bp):
GTCCTCAAAGAGCAGGACGCTCTTCATTTCCTTCTTTTCCCTCATG
Found at i:2513306 original size:62 final size:61
Alignment explanation
Indices: 2513199--2513550 Score: 403
Period size: 62 Copynumber: 5.8 Consensus size: 61
2513189 AGGTATGGGG
* * *
2513199 ACGAATTGGTGGCAACTTTGTAGTCCTCAAAGAGC-GAGACATCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCAG-GACGTCTTTTTCTTTCAAAGCCCAC
*
2513261 ACGAGTTGGTGGCACCTTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTT-AAAGCCCAC
1 ACGAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2513322 GA-AAGTTGGTGGCAGCTTTTAGTCCTAAAAGAGCCGGAATGCCTTTTTCTTTTCAAAGCCCTC
1 -ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGG-ACGTCTTTTTC-TTTCAAAGCCCAC
*
2513385 ACGAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCAC
1 ACGAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
* * * * * * *
2513447 GCAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCA-GACG-CCTTTTCTGTCGAAA-CACAC
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTC-AAAGCCCAC
*
2513506 ACGAGTTGGTGGCA-CTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
2513551 CCTCTTCCCC
Statistics
Matches: 247, Mismatches: 32, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
58 19 0.08
59 28 0.11
60 29 0.12
61 47 0.19
62 72 0.29
63 33 0.13
64 19 0.08
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (61 bp):
ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCAC
Found at i:2513425 original size:124 final size:123
Alignment explanation
Indices: 2513202--2513550 Score: 464
Period size: 124 Copynumber: 2.9 Consensus size: 123
2513192 TATGGGGACG
2513202 AATTGGTGGCAACTTTGTAGTCCTCAAAGAGCGAGACAT--CTTTTTCTTTCAAAGCCCACACGA
1 AATTGGTGGCAACTTT-TAGTCCTCAAAGAGCG-GA-ATGCCTTTTTCTTTCAAAGCCCACACGA
*
2513265 GTTGGTGGCACCTTTTTAGTGCTCAAAGAGCAGGACGTCTTTTTCTTT-AAAGCCCACG-A
63 GTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * *
2513324 AAGTTGGTGGCAGCTTTTAGTCCTAAAAGAGCCGGAATGCCTTTTTCTTTTCAAAGCCCTCACGA
1 AA-TTGGTGGCAACTTTTAGTCCTCAAAGAG-CGGAATGCCTTTTTC-TTTCAAAGCCCACACGA
*
2513389 GTTGGTGGCACCTTTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTTTCAAAGCCCACGCA
63 GTTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCA
* * * * * *
2513450 AATTGGTGGCACCTTTCAGTCCTCAAAGAGCAG-ACGCC-TTTTCTGTCGAAA-CACACACGAGT
1 AATTGGTGGCAACTTTTAGTCCTCAAAGAGCGGAATGCCTTTTTCTTTC-AAAGCCCACACGAGT
*
2513512 TGGTGGCA-C-TTTTAGTCCTCAAAGAGCAGGACGCCTTTT
65 TGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGTCTTTT
2513551 CCTCTTCCCC
Statistics
Matches: 204, Mismatches: 15, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
119 28 0.14
120 1 0.00
121 22 0.11
122 25 0.12
123 26 0.13
124 64 0.31
125 35 0.17
126 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (123 bp):
AATTGGTGGCAACTTTTAGTCCTCAAAGAGCGGAATGCCTTTTTCTTTCAAAGCCCACACGAGTT
GGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTCAAAGCCCACGCA
Found at i:2513887 original size:40 final size:40
Alignment explanation
Indices: 2513800--2513900 Score: 111
Period size: 40 Copynumber: 2.5 Consensus size: 40
2513790 GTAGGACGTA
2513800 CTCTTTTTCTCTTTGTCCTCAAGAAGCAGGACACTTTCCTT
1 CTCTTTTTC-CTTTGTCCTCAAGAAGCAGGACACTTTCCTT
* * *
2513841 -TCCTTTTTCCTTTGTCCTCAAGGAG-TGAGAC-CTATTTCTT
1 CT-CTTTTTCCTTTGTCCTCAAGAAGCAG-GACACT-TTCCTT
2513881 CTC-TTTTCCTTTGTCCTCAA
1 CTCTTTTTCCTTTGTCCTCAA
2513901 AAAGTGGGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
39 20 0.38
40 25 0.47
41 8 0.15
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.45
Consensus pattern (40 bp):
CTCTTTTTCCTTTGTCCTCAAGAAGCAGGACACTTTCCTT
Found at i:2514407 original size:61 final size:60
Alignment explanation
Indices: 2514284--2514620 Score: 299
Period size: 61 Copynumber: 5.6 Consensus size: 60
2514274 TAGGGACGAA
* * * * *
2514284 TTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACA-TTTTTCCTTCAAAGCCCACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACACTTTTTCTTTCAAAGCCCACACAAG
* * * *
2514343 TTGGTAGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAACAGGA-CACTTTTTCTTTCAAAGCCCACACAAG
* * * * *
2514404 TTGGTGGCAGCTTTTAGTCCT-AAAAAAGTC-GGACACCTTTTCTTTTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAA--CAGGACACTTTTTC-TTTCAAAGCCCACACAAG
* * *
2514465 TTGGTGGCACCTTTTAGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGA-AAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAAC-AGGAC-ACTTTTTCTTTCAAAGCCCAC-ACAAG
* * * * * * * * *
2514526 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTATTTCGAAGCACAACACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACACTTTTTCTTTCAAAGC-CCACACAAG
* *
2514587 TT-GTGTGCACTTTTTAGTCCTCAAAGAGCAGGAC
1 TTGGTG-GCACCTTTTAGTCCTCAAAGAACAGGAC
2514621 GCCTTTTCCT
Statistics
Matches: 227, Mismatches: 37, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
59 29 0.13
60 31 0.14
61 156 0.69
62 11 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACACTTTTTCTTTCAAAGCCCACACAAG
Found at i:2514545 original size:122 final size:121
Alignment explanation
Indices: 2514326--2514621 Score: 364
Period size: 122 Copynumber: 2.4 Consensus size: 121
2514316 ACATTTTTCC
* * * * *
2514326 TTCAAAGCCCACACGAGTTGGTAGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTA
1 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGACTATTTCTTTCA
* * * * *
2514391 AAGCCCACGCAAGTTGGTGGCAGCTTTTAGTCCTAAAAAAGTC-GGACACCTTTTCTT
66 AAGCCCACGAAAGTTGGTGGCACCTTTCAGTCCTAAAAAAG-CAAGACACCTTTT-AT
* *
2514448 TTCAAAGCCCTCACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTA-GACGTCTATTTCTTTC
1 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGC-AGGACGACTATTTCTTTC
* * *
2514512 AAAGCCCACGAAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCTTTTAT
65 AAAGCCCACGAAAGTTGGTGGCACCTTTCAGTCCTAAAAAAGCAAGACACCTTTTAT
* * *
2514569 TTCGAAGCACAACACGAGTT-GTGTGCACTTTTTAGTCCTCAAAGAGCAGGACG
1 TTCAAAGC-CCACACGAGTTGGTG-GCACCTTTTAGTCCTCAAAGAGCAGGACG
2514622 CCTTTTCCTC
Statistics
Matches: 150, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
121 13 0.09
122 136 0.91
123 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (121 bp):
TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGACTATTTCTTTCA
AAGCCCACGAAAGTTGGTGGCACCTTTCAGTCCTAAAAAAGCAAGACACCTTTTAT
Found at i:2514628 original size:183 final size:181
Alignment explanation
Indices: 2514279--2514607 Score: 398
Period size: 183 Copynumber: 1.8 Consensus size: 181
2514269 AGGTATAGGG
*
2514279 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATTTTTCCTTCAAAGCCCACACGAGT
1 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATTTTTCCTTCAAAGCCCACACAAGT
* * * * * * * *
2514344 TGGTAGCACCTTTTAGTCCTCAAAGAACAGGATGACTTTTTCTTTTAAAGCCCACGCAAGTTGGT
66 TGGTAGCACCTTTCAGTCCTCAAAGAACAAGACGACCTTTTATTTCAAAGCCAACACAAGTTGGT
2514409 GGCAGCTTTTAGTCCTAAAAAAGTCGGACACCTTTTCTTTTCAAAGCCCTC
131 GGCAGCTTTTAGTCCTAAAAAAGTCGGACACCTTTTCTTTTCAAAGCCCTC
* * * * *
2514460 ACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGA-
1 ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGC-AGGACAT-T-TTTCCTTCAAAGCCCAC-AC
* * * *
2514523 AAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CCTTTTATTTCGAAGCACAACACGAG
62 AAGTTGGTAGCACCTTTCAGTCCTCAAAGAACAAGACGACCTTTTATTTCAAAGC-CAACACAAG
2514587 TT-GTGTGCA-CTTTTTAGTCCT
126 TTGGTG-GCAGC-TTTTAGTCCT
2514608 CAAAGAGCAG
Statistics
Matches: 123, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
181 35 0.28
182 18 0.15
183 69 0.56
184 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (181 bp):
ACGAATTGGTGGCACCTTCTAGGCCTCAAAGAGCAGGACATTTTTCCTTCAAAGCCCACACAAGT
TGGTAGCACCTTTCAGTCCTCAAAGAACAAGACGACCTTTTATTTCAAAGCCAACACAAGTTGGT
GGCAGCTTTTAGTCCTAAAAAAGTCGGACACCTTTTCTTTTCAAAGCCCTC
Found at i:2514694 original size:45 final size:43
Alignment explanation
Indices: 2514598--2514829 Score: 230
Period size: 45 Copynumber: 5.4 Consensus size: 43
2514588 TGTGTGCACT
*
2514598 TTTTAGTCCTCAAAGAGCAGGACGC-C-T--TTTCCTC-TACCC
1 TTTT-GTCCTCAAAGAGCAGGACGCACTTCATTTCCTCTTTCCC
**
2514637 CCTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTCCC
1 TTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCC-TCTTTCCC
* *
2514681 TTTTTGTCCTCAAAGAGTAGGACGCACTTTATTTTCCTCTTT--C
1 -TTTTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTCTTTCCC
* *
2514724 TTTTGTCCTCAAAGAGCAGGACGCATTTCATTTTCC-GTTTCTCC
1 TTTTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTCTTTC-CC
** *
2514768 -TTTGTCCTCAAAGAGCAGGACGTTCTTCATTTCCTGTTTTCCC
1 TTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCT-CTTTCCC
*
2514811 TTCTAGTCCTCAAAGAGCA
1 TT-TTGTCCTCAAAGAGCA
2514830 TGACATATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
38 20 0.12
39 3 0.02
40 1 0.01
41 3 0.02
42 43 0.27
43 31 0.19
44 10 0.06
45 46 0.28
46 5 0.03
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.36
Consensus pattern (43 bp):
TTTTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTCTTTCCC
Found at i:2514782 original size:43 final size:41
Alignment explanation
Indices: 2514639--2514983 Score: 215
Period size: 45 Copynumber: 8.3 Consensus size: 41
2514629 CTCTACCCCC
*
2514639 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTCCCTTT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCC-T-TTT-CC--T
* *
2514684 TTGTCCTCAAAGAGTAGGACGCACTTT-ATTTTCCTCTTTCTT
1 TTGTCCTCAAAGAGCAGGACGCA-TTTCATTTTCCT-TTTCCT
2514726 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCC-TTT-TCCT
*
2514769 TTGTCCTCAAAGAGCAGGACG-TTCTTCA-TTTCCTGTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCAT-TTCATTTTCC--TTTT-CCT
* ** * *
2514812 TCTAGTCCTCAAAGAGCATGACATATTTCGTTTTCCTTTTTTCTT
1 T-T-GTCCTCAAAGAGCAGGACGCATTTCATTTTCC--TTTTCCT
* *
2514857 TTGTCCTCGAAA-AGTAGGACG----T-ACTTT--TTTTCTCT
1 TTGTCCTC-AAAGAGCAGGACGCATTTCATTTTCCTTTTC-CT
2514892 TTGTCCTC-AAGAAGCAGGACGC-TTTCCA--TTCCTTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACGCATTT-CATTTTCC--TTTTCCT
* *
2514933 TTGTCCTCAAGGAGC-GAGAC-CTATTTCATTCT-CTTTTCCT
1 TTGTCCTCAAAGAGCAG-GACGC-ATTTCATTTTCCTTTTCCT
2514973 TTGTCCTCAAA
1 TTGTCCTCAAA
2514984 AAGTGGGACA
Statistics
Matches: 247, Mismatches: 22, Indels: 67
0.74 0.07 0.20
Matches are distributed among these distances:
33 2 0.01
34 5 0.02
35 17 0.07
38 6 0.02
39 1 0.00
40 20 0.08
41 21 0.09
42 50 0.20
43 50 0.20
44 6 0.02
45 51 0.21
46 18 0.07
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.41
Consensus pattern (41 bp):
TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTCCT
Found at i:2514846 original size:130 final size:131
Alignment explanation
Indices: 2514639--2514877 Score: 324
Period size: 130 Copynumber: 1.8 Consensus size: 131
2514629 CTCTACCCCC
* * *
2514639 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTCCCTTTTTGTCCTCAAAGAGTAGGAC
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTCCCTTCTAGTCCTCAAAGAGCAGGAC
*
2514704 GCACTTTATTTTCC-TCTTTCTTTTGTCCTC-AAAGAGCAGGACGCATTTCATTTTCCGTTTCTC
66 ACACTTTATTTTCCTTCTTTCTTTTGTCCTCGAAA-AGCAGGACGCATTTCATTTTCCGTTTCTC
2514767 CT
130 CT
** *
2514769 TTGTCCTCAAAGAGCAGGACGTTCTTCATTTCCTGT-TTTCCCTTCTAGTCCTCAAAGAGCATGA
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCT-TCTTTCCCTTCTAGTCCTCAAAGAGCAGGA
* * * *
2514833 CATA-TTTCGTTTTCCTTTTTTCTTTTGTCCTCGAAAAGTAGGACG
65 CACACTTT-ATTTTCCTTCTTTCTTTTGTCCTCGAAAAGCAGGACG
2514878 TACTTTTTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
129 3 0.03
130 64 0.68
131 24 0.26
132 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.39
Consensus pattern (131 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTTTCCCTTCTAGTCCTCAAAGAGCAGGAC
ACACTTTATTTTCCTTCTTTCTTTTGTCCTCGAAAAGCAGGACGCATTTCATTTTCCGTTTCTCC
T
Found at i:2514940 original size:41 final size:40
Alignment explanation
Indices: 2514882--2514982 Score: 125
Period size: 41 Copynumber: 2.5 Consensus size: 40
2514872 AGGACGTACT
2514882 TTTTTTCTCTTTGTCCTCAAGAAGC-AGGACGCT-TTCCATTCC
1 TTTTTTC-CTTTGTCCTCAAGAAGCGA-GAC-CTATTCCATT-C
* *
2514924 TTTTTTCCTTTGTCCTCAAGGAGCGAGACCTATTTCATTC
1 TTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTCCATTC
*
2514964 TCTTTTCCTTTGTCCTCAA
1 TTTTTTCCTTTGTCCTCAA
2514983 AAAGTGGGAC
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
40 21 0.39
41 25 0.46
42 8 0.15
ACGTcount: A:0.16, C:0.28, G:0.13, T:0.44
Consensus pattern (40 bp):
TTTTTTCCTTTGTCCTCAAGAAGCGAGACCTATTCCATTC
Found at i:2515533 original size:61 final size:60
Alignment explanation
Indices: 2515372--2515702 Score: 225
Period size: 61 Copynumber: 5.5 Consensus size: 60
2515362 TAGGGACAAA
* * * * *
2515372 TTGGTGGCACCTTCTAAG-CCTC-AAGAGCAGGACATC-TTTTTCCTTCAAAGCCCACACGAG
1 TTGGTGGCACCTT-TTAGTCCTCAAAGAGC--GACACCTTTTTTCTTTCAAAGCCCACGCAAG
* * * *
2515432 TTGGTAGGCAACTTTT-GTCCTCAAAGAACATGATGA-CTTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGT-GGCACCTTTTAGTCCTCAAAGAGC--GA-CACCTTTTTTCTTTCAAAGCCCACGCAAG
* * * * *
2515494 TTGGTGGCA-GTTTTAGTCCTAAAAGAGTCGGACACC--TTTTCTATTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAG-C-GACACCTTTTTTCT-TTCAAAGCCCACGCAAG
* * * *
2515554 TTGGTGGCACCTTTT-GTCCTCAAAGAGCTAGACGTCTATTTCTTTCAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCGACACCT-TTTTTCTTTCAAAGCCCACGCAAG
* * * * * ***
2515614 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCTTTTTAT-TTTCGAAGCACACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCGACAC-CTTTTT-TCTTTCAAAGCCCACGCAAG
*
2515675 TTGGTGGCACTTTTTAGTCCTC-AAGAGC
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGC
2515703 AGGACGCCTT
Statistics
Matches: 217, Mismatches: 38, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
58 3 0.01
59 8 0.04
60 82 0.38
61 95 0.44
62 29 0.13
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (60 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCGACACCTTTTTTCTTTCAAAGCCCACGCAAG
Found at i:2515678 original size:121 final size:121
Alignment explanation
Indices: 2515372--2515703 Score: 356
Period size: 121 Copynumber: 2.7 Consensus size: 121
2515362 TAGGGACAAA
**
2515372 TTGGTGGCACCTTCTAAG-CCTC-AAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGAGTTG
1 TTGGTGGCACCTT-TAAGTCCTCAAAGAGCAGGACA-CTTTTTTATTCAAAGCCCACACGAGTTG
* * * *
2515435 GTAGGCAACTTTTGTCCTCAAAGAACATGATGACTTTTTTCTTTTAAAGCCCACGCAAG
64 GT-GGCACCTTTTGTCCTCAAAGAGCATGATGACTTATTTCTTTCAAAGCCCACGCAAG
* * * * *
2515494 TTGGTGGCA-GTTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTATTCAAAGCCCTCACGAGTTG
1 TTGGTGGCACCTTTAAGTCCTCAAAGAG-CAGGACA-CTTTTTTATTCAAAGCCCACACGAGTTG
2515557 GTGGCACCTTTTGTCCTCAAAGAGC-T-A-GACGTCTATTTCTTTCAAAGCCCACGCAAG
64 GTGGCACCTTTTGTCCTCAAAGAGCATGATGAC-T-TATTTCTTTCAAAGCCCACGCAAG
* * * * * * *
2515614 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCTTTTTATTTTCGAAGCACACATGAGTTGG
1 TTGGTGGCACCTTTAAGTCCTCAAAGAGCAGGACACTTTTT-TATTCAAAGCCCACACGAGTTGG
*
2515679 TGGCACTTTTTAGTCCTC-AAGAGCA
65 TGGCACCTTTT-GTCCTCAAAGAGCA
2515704 GGACGCCTTT
Statistics
Matches: 176, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
118 3 0.02
119 2 0.01
120 41 0.23
121 78 0.44
122 51 0.29
123 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (121 bp):
TTGGTGGCACCTTTAAGTCCTCAAAGAGCAGGACACTTTTTTATTCAAAGCCCACACGAGTTGGT
GGCACCTTTTGTCCTCAAAGAGCATGATGACTTATTTCTTTCAAAGCCCACGCAAG
Found at i:2515714 original size:61 final size:61
Alignment explanation
Indices: 2515372--2515714 Score: 292
Period size: 60 Copynumber: 5.7 Consensus size: 61
2515362 TAGGGACAAA
* ** **
2515372 TTGGTGGCACCTTCTAAG-CCTC-AAGAGCAGGACATCTTTTTCCTTCAAAGCCCACACGAG
1 TTGGTGGCACCTT-TTAGTCCTCAAAGAGCAGGACGCCTTTTTATTTCAAAGCCCACACGAG
* * * * * * * * *
2515432 TTGGTAGGCAACTTTT-GTCCTCAAAGAACATGATGACTTTTTTCTTTTAAAGCCCACGCAAG
1 TTGGT-GGCACCTTTTAGTCCTCAAAGAGCAGGACG-CCTTTTTATTTCAAAGCCCACACGAG
* * * *
2515494 TTGGTGGCA-GTTTTAGTCCTAAAAGAGTC-GGACACCTTTTCTA-TTCAAAGCCCTCACGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAG-CAGGACGCCTTTT-TATTTCAAAGCCCACACGAG
* * * * *
2515554 TTGGTGGCACCTTTT-GTCCTCAAAGAGCTA-GACGTCTATTTCTTTCAAAGCCCACGCAAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGC-AGGACGCCTTTTTATTTCAAAGCCCACACGAG
* * * * *
2515614 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-CTTTTTATTTTCGAAGCACACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTA-TTTCAAAGCCCACACGAG
*
2515675 TTGGTGGCACTTTTTAGTCCTC-AAGAGCAGGACGCCTTTT
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTT
2515715 CCTCTACCCC
Statistics
Matches: 224, Mismatches: 44, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
59 3 0.01
60 104 0.46
61 91 0.41
62 26 0.12
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (61 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTATTTCAAAGCCCACACGAG
Found at i:2515776 original size:40 final size:41
Alignment explanation
Indices: 2515726--2515985 Score: 152
Period size: 40 Copynumber: 6.4 Consensus size: 41
2515716 CTCTACCCCC
* *
2515726 TTGTCCTCAAAGAGCAGGACACACTTCATTTCCTCTT-T-TT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCT-TTCTCCT
*
2515766 TTGTCCTCAAAGAGCAGGACGCATTTCATTTTCCGTTTCTCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTCA-TTTCC-TTTCTCCT
** *
2515809 TTGTCCTCAAAGAGCAGGACGTTCTTCATTTCCTTGTTTTCCCT
1 TTGTCCTCAAAGAGCAGGACGCACTTCATTTCC-T-TTCT-CCT
* * * * **
2515853 TCTAGTCCTCAAAGAGCATGAC-TATTTCGTTTTCCTTT-TTTT
1 T-T-GTCCTCAAAGAGCAGGACGCACTTC-ATTTCCTTTCTCCT
* *
2515895 TTGTCCTCGAAA-AGTAGGACGTAC-T--TTT--TTTCT-CT
1 TTGTCCTC-AAAGAGCAGGACGCACTTCATTTCCTTTCTCCT
* *
2515930 TTGTCCTC-AAGAAGCAGGACGC-TTTCCA-TTCCTTTTTTCCT
1 TTGTCCTCAAAG-AGCAGGACGCACTT-CATTTCC-TTTCTCCT
*
2515971 TTGTCCTCAAGGAGC
1 TTGTCCTCAAAGAGC
2515986 GAGACCTATT
Statistics
Matches: 174, Mismatches: 23, Indels: 45
0.72 0.10 0.19
Matches are distributed among these distances:
33 2 0.01
35 21 0.12
36 1 0.01
37 5 0.03
40 43 0.25
41 26 0.15
42 12 0.07
43 30 0.17
44 6 0.03
45 6 0.03
46 22 0.13
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (41 bp):
TTGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTCTCCT
Found at i:2515887 original size:46 final size:45
Alignment explanation
Indices: 2515765--2515894 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 45
2515755 TTCCTCTTTT
*
2515765 TTTGTCCTCAAAGAGCAGGACGCATTTCATTTTCC--G-TTTCTCC
1 TTTGTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTGTTTTCTCC
*
2515808 TTTGTCCTCAAAGAGCAGGACGT-TCTTCATTTCCTTGTTTTC-CC
1 TTTGTCCTCAAAGAGCAGGACGTAT-TTCTTTTCCTTGTTTTCTCC
* *
2515852 TTCTAGTCCTCAAAGAGCATGAC-TATTTCGTTTTCCTTTTTTT
1 TT-T-GTCCTCAAAGAGCAGGACGTATTTC-TTTTCCTTGTTTT
2515895 TTGTCCTCGA
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
42 6 0.08
43 25 0.34
44 5 0.07
45 9 0.12
46 29 0.39
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (45 bp):
TTTGTCCTCAAAGAGCAGGACGTATTTCTTTTCCTTGTTTTCTCC
Found at i:2516001 original size:41 final size:40
Alignment explanation
Indices: 2515920--2516017 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 40
2515910 AGGACGTACT
2515920 TTTTTTCTCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTCC
1 TTTTTTC-CTTTGTCCTCAAGAAGCAGGACGCTTTCCATT-C
* *
2515962 TTTTTTCCTTTGTCCTCAAGGAGC-GAGAC-CTATTTCATTC
1 TTTTTTCCTTTGTCCTCAAGAAGCAG-GACGCT-TTCCATTC
*
2516002 TCTTTTCCTTTTGTCC
1 TTTTTTCC-TTTGTCC
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
40 11 0.22
41 32 0.64
42 7 0.14
ACGTcount: A:0.14, C:0.28, G:0.13, T:0.45
Consensus pattern (40 bp):
TTTTTTCCTTTGTCCTCAAGAAGCAGGACGCTTTCCATTC
Done.