Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 6 of 16
Found at i:823165 original size:84 final size:84
Alignment explanation
Indices: 823023--823192 Score: 245
Period size: 84 Copynumber: 2.0 Consensus size: 84
823013 GAGAATATTC
* * *
823023 ATGTATCTTAATAGATTCATATTAATATAAGATATAAACCTTTAATTAATTATCAGATACATGTA
1 ATGTAACTTAATAGATTCATATTAATATAAGATAT-AACCTTTAATAAATTATAAGATACATGTA
*
823088 ACAATTAATTATGAA-ATAAA
65 ACAACTAATTAT-AAGATAAA
* *
823108 ATGTAACTTAAATAGATTCATATTAATGTAAGGTAT-ACCTTTAATAAATTATAAGATACATGTA
1 ATGTAACTT-AATAGATTCATATTAATATAAGATATAACCTTTAATAAATTATAAGATACATGTA
823172 ACAACTAATTATAAGATAAA
65 ACAACTAATTATAAGATAAA
823192 A
1 A
823193 ATTATGTATC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
83 2 0.03
84 43 0.56
85 8 0.10
86 24 0.31
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (84 bp):
ATGTAACTTAATAGATTCATATTAATATAAGATATAACCTTTAATAAATTATAAGATACATGTAA
CAACTAATTATAAGATAAA
Found at i:823297 original size:3 final size:3
Alignment explanation
Indices: 823289--823330 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
823279 GCATTACATA
823289 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
823331 GAAGTGTTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:826034 original size:25 final size:25
Alignment explanation
Indices: 825991--826038 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
825981 GAATTTCACT
*
825991 TTTTTTAAATAAAATTTTAAATTTA
1 TTTTTTAAAGAAAATTTTAAATTTA
826016 TTTTTTATAAGAAAA-TTTAAATT
1 TTTTTTA-AAGAAAATTTTAAATT
826039 ACTAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTTTTAAAGAAAATTTTAAATTTA
Found at i:828495 original size:43 final size:44
Alignment explanation
Indices: 828434--828520 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
828424 GGAAAAAAAG
*
828434 GTAAAGTCTAAGTTACCCCTC-TTTCATTTTTATTTCCAAAACT
1 GTAAAATCTAAGTTACCCCTCTTTTCATTTTTATTTCCAAAACT
*
828477 GTAAAATCTAAGTTACCCCTCTTTTTATTTTTATTTCCAAAACT
1 GTAAAATCTAAGTTACCCCTCTTTTCATTTTTATTTCCAAAACT
828521 TTTCTCGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 20 0.49
44 21 0.51
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.44
Consensus pattern (44 bp):
GTAAAATCTAAGTTACCCCTCTTTTCATTTTTATTTCCAAAACT
Found at i:831828 original size:52 final size:52
Alignment explanation
Indices: 831749--831867 Score: 220
Period size: 52 Copynumber: 2.3 Consensus size: 52
831739 AAGAGTTACC
*
831749 GCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
*
831801 GCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
831853 GCATGTATCGATACA
1 GCATGTATCGATACA
831868 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
Found at i:831880 original size:52 final size:51
Alignment explanation
Indices: 831749--831887 Score: 208
Period size: 52 Copynumber: 2.7 Consensus size: 51
831739 AAGAGTTACC
831749 GCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
* *
831801 GCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
*
831853 GCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GCATGTATCGATACATTA-AT-AGTGTATCGATACA
831888 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
GCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
Found at i:831894 original size:13 final size:13
Alignment explanation
Indices: 831876--831900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
831866 CAAAGATCAG
831876 TGTATCGATACAA
1 TGTATCGATACAA
831889 TGTATCGATACA
1 TGTATCGATACA
831901 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:831984 original size:13 final size:13
Alignment explanation
Indices: 831966--831990 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
831956 CAAAAAAATA
831966 TGTATCGATACAT
1 TGTATCGATACAT
831979 TGTATCGATACA
1 TGTATCGATACA
831991 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:831986 original size:33 final size:33
Alignment explanation
Indices: 831944--832010 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
831934 AGTAGCTTAA
831944 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
831977 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
832010 A
1 A
832011 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:835706 original size:2 final size:2
Alignment explanation
Indices: 835699--835724 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
835689 ATCCTACGTC
835699 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
835725 TCACTTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:853916 original size:18 final size:19
Alignment explanation
Indices: 853879--853917 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
853869 CAGATAATAA
*
853879 ATATCTACTGTTCCTATTC
1 ATATCTACTGTTCATATTC
*
853898 ATATCTA-TTTTCATATTC
1 ATATCTACTGTTCATATTC
853916 AT
1 AT
853918 CGAAGATAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.26, C:0.21, G:0.03, T:0.51
Consensus pattern (19 bp):
ATATCTACTGTTCATATTC
Found at i:858121 original size:18 final size:18
Alignment explanation
Indices: 858060--858121 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
858050 CCCCAAATAC
** *
858060 AAAAAAAAAGGAGGAAAA
1 AAAAAAAAAACAGCAAAA
*
858078 AAAAAAAAAAC--TAAAA
1 AAAAAAAAAACAGCAAAA
858094 AAAAAAAAAACAGCAAAA
1 AAAAAAAAAACAGCAAAA
858112 AAAAAAAAAA
1 AAAAAAAAAA
858122 AAACCCAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
16 15 0.39
18 23 0.61
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAACAGCAAAA
Found at i:858130 original size:20 final size:19
Alignment explanation
Indices: 858074--858250 Score: 97
Period size: 20 Copynumber: 8.8 Consensus size: 19
858064 AAAAAGGAGG
*
858074 AAAAAAAAAAAAAA-CTAA
1 AAAAAAAAAAAAAACCAAA
* *
858092 AAAAAAAAAAAACAGCAAA
1 AAAAAAAAAAAAAACCAAA
*
858111 AAAAAAAAAAAAAACC-CA
1 AAAAAAAAAAAAAACCAAA
**** *
858129 AAAAAAGTGGAAAACTAAA
1 AAAAAAAAAAAAAACCAAA
* *
858148 GGAAAAAAAAAAAAACTAAA
1 -AAAAAAAAAAAAAACCAAA
858168 CAAAAAAAAAATAAACACTACAAATAA
1 -AAAAAAAAAA-AAA-AC--C--A-AA
858195 AAAAAAAAACAAAAACCAAA
1 AAAAAAAAA-AAAAACCAAA
* **
858215 AAGAACAAAAAACAGCCCAAA
1 AA-AA-AAAAAAAAAACCAAA
*
858236 AAAACAAAAAAAAAC
1 AAAAAAAAAAAAAAC
858251 TAAACTAATG
Statistics
Matches: 120, Mismatches: 26, Indels: 25
0.70 0.15 0.15
Matches are distributed among these distances:
18 25 0.21
19 25 0.21
20 29 0.24
21 15 0.12
22 7 0.06
23 1 0.01
25 2 0.02
26 13 0.11
27 3 0.03
ACGTcount: A:0.79, C:0.12, G:0.05, T:0.04
Consensus pattern (19 bp):
AAAAAAAAAAAAAACCAAA
Found at i:858134 original size:1 final size:1
Alignment explanation
Indices: 858074--858124 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
858064 AAAAAGGAGG
** * **
858074 AAAAAAAAAAAAAACTAAAAAAAAAAAAAACAGCAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
858125 CCCAAAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.90, C:0.06, G:0.02, T:0.02
Consensus pattern (1 bp):
A
Found at i:858134 original size:16 final size:17
Alignment explanation
Indices: 858073--858121 Score: 73
Period size: 16 Copynumber: 2.9 Consensus size: 17
858063 AAAAAAGGAG
858073 GAAAAAAAAAAAAAAC-
1 GAAAAAAAAAAAAAACA
*
858089 TAAAAAAAAAAAAAACA
1 GAAAAAAAAAAAAAACA
858106 GCAAAAAAAAAAAAAA
1 G-AAAAAAAAAAAAAA
858122 AAACCCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 15 0.52
18 14 0.48
ACGTcount: A:0.88, C:0.06, G:0.04, T:0.02
Consensus pattern (17 bp):
GAAAAAAAAAAAAAACA
Found at i:858172 original size:15 final size:15
Alignment explanation
Indices: 858153--858184 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
858143 CTAAAGGAAA
858153 AAAAAAAAAACTAAAC
1 AAAAAAAAAA-TAAAC
858169 AAAAAAAAAATAAAC
1 AAAAAAAAAATAAAC
858184 A
1 A
858185 CTACAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.84, C:0.09, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAAAAAAATAAAC
Found at i:859682 original size:49 final size:52
Alignment explanation
Indices: 859610--859720 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 52
859600 GTCTACCGCA
*
859610 GTATCGATACATTTAATAGTGTATCGATACATCTG-GGC-AA-TTGCCTGC-T
1 GTATCGATACATTTAATAATGTATCGATACAT-TGAGGCAAATTTGCCTGCAT
*
859659 GTATCGATACATTTTATAATGTATCGATACATTGAGGCAAATTTGCCTGCAT
1 GTATCGATACATTTAATAATGTATCGATACATTGAGGCAAATTTGCCTGCAT
859711 GTAT-GATACA
1 GTATCGATACA
859721 AAGATAGTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
48 2 0.04
49 33 0.59
50 2 0.04
51 14 0.25
52 5 0.09
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (52 bp):
GTATCGATACATTTAATAATGTATCGATACATTGAGGCAAATTTGCCTGCAT
Found at i:861077 original size:23 final size:23
Alignment explanation
Indices: 861029--861074 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
861019 TGACTAAGAT
* *
861029 ATTATTAAACATCGATTATATTA
1 ATTATTAAACATCGATAAAATTA
*
861052 ATTATTAAA-ATTGATAAAATTA
1 ATTATTAAACATCGATAAAATTA
861074 A
1 A
861075 ATTTAATATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (23 bp):
ATTATTAAACATCGATAAAATTA
Found at i:878442 original size:84 final size:84
Alignment explanation
Indices: 878300--878469 Score: 245
Period size: 84 Copynumber: 2.0 Consensus size: 84
878290 GAGAATATTC
* * *
878300 ATGTATCTTAATAGATTCATATTAATATAAGATATAAACCTTTAATTAATTATCAGATACATGTA
1 ATGTAACTTAATAGATTCATATTAATATAAGATAT-AACCTTTAATAAATTATAAGATACATGTA
*
878365 ACAATTAATTATGAA-ATAAA
65 ACAACTAATTAT-AAGATAAA
* *
878385 ATGTAACTTAAATAGATTCATATTAATGTAAGGTAT-ACCTTTAATAAATTATAAGATACATGTA
1 ATGTAACTT-AATAGATTCATATTAATATAAGATATAACCTTTAATAAATTATAAGATACATGTA
878449 ACAACTAATTATAAGATAAA
65 ACAACTAATTATAAGATAAA
878469 A
1 A
878470 ATTATGTATC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
83 2 0.03
84 43 0.56
85 8 0.10
86 24 0.31
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (84 bp):
ATGTAACTTAATAGATTCATATTAATATAAGATATAACCTTTAATAAATTATAAGATACATGTAA
CAACTAATTATAAGATAAA
Found at i:878574 original size:3 final size:3
Alignment explanation
Indices: 878566--878607 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
878556 GCATTACATA
878566 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
878608 GAAGTGTTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:881311 original size:25 final size:25
Alignment explanation
Indices: 881268--881315 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
881258 GAATTTCACT
*
881268 TTTTTTAAATAAAATTTTAAATTTA
1 TTTTTTAAAGAAAATTTTAAATTTA
881293 TTTTTTATAAGAAAA-TTTAAATT
1 TTTTTTA-AAGAAAATTTTAAATT
881316 ACTAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTTTTAAAGAAAATTTTAAATTTA
Found at i:883771 original size:43 final size:44
Alignment explanation
Indices: 883710--883796 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
883700 GGAAAAAAAG
*
883710 GTAAAGTCTAAGTTACCCCTC-TTTCATTTTTATTTCCAAAACT
1 GTAAAATCTAAGTTACCCCTCTTTTCATTTTTATTTCCAAAACT
*
883753 GTAAAATCTAAGTTACCCCTCTTTTTATTTTTATTTCCAAAACT
1 GTAAAATCTAAGTTACCCCTCTTTTCATTTTTATTTCCAAAACT
883797 TTTCTCGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 20 0.49
44 21 0.51
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.44
Consensus pattern (44 bp):
GTAAAATCTAAGTTACCCCTCTTTTCATTTTTATTTCCAAAACT
Found at i:887103 original size:52 final size:52
Alignment explanation
Indices: 887024--887142 Score: 220
Period size: 52 Copynumber: 2.3 Consensus size: 52
887014 AAGAGTTACC
*
887024 GCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
*
887076 GCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
887128 GCATGTATCGATACA
1 GCATGTATCGATACA
887143 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
Found at i:887155 original size:52 final size:51
Alignment explanation
Indices: 887024--887162 Score: 208
Period size: 52 Copynumber: 2.7 Consensus size: 51
887014 AAGAGTTACC
887024 GCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
* *
887076 GCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
*
887128 GCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GCATGTATCGATACATTA-AT-AGTGTATCGATACA
887163 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
GCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGCCT
Found at i:887169 original size:13 final size:13
Alignment explanation
Indices: 887151--887175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
887141 CAAAGATCAG
887151 TGTATCGATACAA
1 TGTATCGATACAA
887164 TGTATCGATACA
1 TGTATCGATACA
887176 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:887259 original size:13 final size:13
Alignment explanation
Indices: 887241--887265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
887231 CAAAAAAATA
887241 TGTATCGATACAT
1 TGTATCGATACAT
887254 TGTATCGATACA
1 TGTATCGATACA
887266 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:887261 original size:33 final size:33
Alignment explanation
Indices: 887219--887285 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
887209 AGTAGCTTAA
887219 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
887252 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
887285 A
1 A
887286 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:891742 original size:3 final size:3
Alignment explanation
Indices: 891736--891761 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
891726 TCAAAAAAAG
891736 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
891762 CTTATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:905243 original size:49 final size:49
Alignment explanation
Indices: 905105--905243 Score: 226
Period size: 50 Copynumber: 2.8 Consensus size: 49
905095 TAAAATATAT
905105 AGCAGCTTATATCTTATAGAAA-TGAGGTGCTTAGTTGTAAAACCCAAG
1 AGCAGCTTATATCTTATAGAAATTGAGGTGCTTAGTTGTAAAACCCAAG
* *
905153 AGTAGCTTATATCTTACTAGAAATCGAGGTGCTTAGTTGTAAAACCCAAG
1 AGCAGCTTATATCTTA-TAGAAATTGAGGTGCTTAGTTGTAAAACCCAAG
* *
905203 AGCGGCTTATATCTTAGAGAAATTGAGGTGCTTAGTTGTAA
1 AGCAGCTTATATCTTATAGAAATTGAGGTGCTTAGTTGTAA
905244 GACTTAAAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
48 15 0.18
49 29 0.35
50 39 0.47
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (49 bp):
AGCAGCTTATATCTTATAGAAATTGAGGTGCTTAGTTGTAAAACCCAAG
Found at i:908758 original size:30 final size:31
Alignment explanation
Indices: 908722--908784 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
908712 ATATTTATAT
908722 ATTTTTA-TAATTAAATT-TAAATAAAAATAA
1 ATTTTTATTAA-TAAATTATAAATAAAAATAA
* *
908752 ATTTTTATTAATAAATTATAATTAAAATTAA
1 ATTTTTATTAATAAATTATAAATAAAAATAA
908783 AT
1 AT
908785 CAATTCAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
ATTTTTATTAATAAATTATAAATAAAAATAA
Found at i:908795 original size:41 final size:36
Alignment explanation
Indices: 908726--908825 Score: 92
Period size: 41 Copynumber: 2.6 Consensus size: 36
908716 TTATATATTT
* *
908726 TTATAATTAAATTTAAATAAAAATAAATTTTTATTAATAAA
1 TTATAATTAAAATTAAAT-CAAATAAA---TTATTAA-AAA
*
908767 TTATAATTAAAATTAAATCAATTCAAATTATTAAAAA
1 TTATAATTAAAATTAAATCAAAT-AAATTATTAAAAA
* *
908804 TTTTATTTAAAATTTAAATCAA
1 TTATAATTAAAA-TTAAATCAA
908826 GTAGATAACT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
37 13 0.25
38 16 0.31
40 3 0.06
41 20 0.38
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (36 bp):
TTATAATTAAAATTAAATCAAATAAATTATTAAAAA
Found at i:908975 original size:17 final size:18
Alignment explanation
Indices: 908953--908997 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 18
908943 TATTCAGTAA
908953 ATATAAAAATTTAAAA-C
1 ATATAAAAATTTAAAATC
*
908970 ATAT-AAAA-TTAAAATT
1 ATATAAAAATTTAAAATC
908986 ATATAAAAATTT
1 ATATAAAAATTT
908998 TACTAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 6 0.25
16 8 0.33
17 8 0.33
18 2 0.08
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATATAAAAATTTAAAATC
Found at i:911206 original size:17 final size:17
Alignment explanation
Indices: 911174--911218 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
911164 ACTGTGTCAC
*
911174 TCACATAAAGTGACAAGA
1 TCACA-AAAGTAACAAGA
911192 TCACAAAAGTAACAAGA
1 TCACAAAAGTAACAAGA
911209 TCACAAAAGT
1 TCACAAAAGT
911219 GACGTTAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.53, C:0.18, G:0.13, T:0.16
Consensus pattern (17 bp):
TCACAAAAGTAACAAGA
Found at i:916785 original size:2 final size:2
Alignment explanation
Indices: 916780--916806 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
916770 TACACCAACA
916780 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
916807 TACATATTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:917645 original size:6 final size:6
Alignment explanation
Indices: 917634--917661 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
917624 GTAGTCATTG
917634 GGCAAT GGCAAT GGCAAT GGCAAT GGCA
1 GGCAAT GGCAAT GGCAAT GGCAAT GGCA
917662 GGTCTATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.36, T:0.14
Consensus pattern (6 bp):
GGCAAT
Found at i:918133 original size:3 final size:3
Alignment explanation
Indices: 918125--918178 Score: 72
Period size: 3 Copynumber: 17.3 Consensus size: 3
918115 GCAAATTCAA
* *
918125 AAT AAT AAT AAT AAT AAT AAT AAA AAT AAAT AAA AAT AAGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA-T AAT AAT
918172 AAT AAT A
1 AAT AAT A
918179 GAATCCCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:920567 original size:16 final size:17
Alignment explanation
Indices: 920537--920569 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
920527 TAGATGCTAT
920537 ATAATAAATTATATAAA
1 ATAATAAATTATATAAA
*
920554 ATAAT-AATTTTATAAA
1 ATAATAAATTATATAAA
920570 TACTAGGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAATAAATTATATAAA
Found at i:924880 original size:52 final size:52
Alignment explanation
Indices: 924802--924929 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
924792 CGAAATATGA
*
924802 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
924854 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
*
924906 AAA-TTGCCTGTATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
924930 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
51 20 0.27
52 48 0.66
53 5 0.07
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:924956 original size:13 final size:13
Alignment explanation
Indices: 924938--924962 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
924928 CAAAGATCAG
924938 TGTATCGATACAA
1 TGTATCGATACAA
924951 TGTATCGATACA
1 TGTATCGATACA
924963 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:925030 original size:20 final size:19
Alignment explanation
Indices: 925001--925069 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
924991 GCAGTAGCTT
925001 AAATTGTATCGATACAAAA
1 AAATTGTATCGATACAAAA
925020 AAATATGTATCGATAC----
1 AAAT-TGTATCGATACAAAA
*
925036 --ATTGTATCAATACAAAA
1 AAATTGTATCGATACAAAA
925053 AAATATGTATCGATACA
1 AAAT-TGTATCGATACA
925070 TTGTATTGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 15
0.70 0.04 0.26
Matches are distributed among these distances:
13 10 0.25
14 2 0.05
19 6 0.15
20 22 0.55
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (19 bp):
AAATTGTATCGATACAAAA
Found at i:925040 original size:33 final size:33
Alignment explanation
Indices: 925003--925102 Score: 146
Period size: 33 Copynumber: 3.0 Consensus size: 33
924993 AGTAGCTTAA
925003 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
*
925036 ATTGTATCAATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* * ***
925069 ATTGTATTGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
925102 A
1 A
925103 GATCGTTGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:929813 original size:19 final size:19
Alignment explanation
Indices: 929770--929826 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
929760 CACATCCAGA
*
929770 TGTATCGATACATTA-TGCTT
1 TGTATCGATACA-TACT-CAT
*
929790 TGTATCGATACATGCTCAT
1 TGTATCGATACATACTCAT
929809 TGTATCGATACATACTCA
1 TGTATCGATACATACTCA
929827 CTTTTATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATACTCAT
Found at i:929915 original size:20 final size:20
Alignment explanation
Indices: 929872--929923 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
929862 TAAGTGAAAT
* **
929872 GTATCGATACATGGGACATT
1 GTATCGATACATGGGAAAAA
*
929892 GTATCGATACATGGTAAAAA
1 GTATCGATACATGGGAAAAA
*
929912 GTATTGATACAT
1 GTATCGATACAT
929924 TGTGCCTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGGGAAAAA
Found at i:932118 original size:14 final size:13
Alignment explanation
Indices: 932099--932140 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
932089 TCATTATAAG
932099 TTTTTTGTAAAATA
1 TTTTTT-TAAAATA
932113 -TTTTTTAAAATA
1 TTTTTTTAAAATA
932125 GTTTTTTTATAAATA
1 -TTTTTTTA-AAATA
932140 T
1 T
932141 GTTAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 7 0.28
13 5 0.20
14 8 0.32
15 5 0.20
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
TTTTTTTAAAATA
Found at i:932149 original size:27 final size:27
Alignment explanation
Indices: 932097--932150 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
932087 TTTCATTATA
* **
932097 AGTTTTTTGTAAAATATTTTTTAAAAT
1 AGTTTTTTGTAAAATATGTTAAAAAAT
932124 AGTTTTTT-TATAAATATGTTAAAAAAT
1 AGTTTTTTGTA-AAATATGTTAAAAAAT
932151 CGTCATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (27 bp):
AGTTTTTTGTAAAATATGTTAAAAAAT
Found at i:932274 original size:63 final size:65
Alignment explanation
Indices: 932198--932335 Score: 185
Period size: 66 Copynumber: 2.1 Consensus size: 65
932188 TTTTTATAAA
**
932198 TTAATTAAATTTAAAAAATTT-AATTAAT-AA-TAATGTATTAATTATTATTTTT-AATAAAAAT
1 TTAATTAAATTTAAAAAATTTAAATTAATAAATTAAAATATTAATTATT-TTTTTAAATAAAAA-
932259 AT
64 AT
*
932261 TTAATTAACTTTAAAAAATTTAAATTAATAAATTAAAATATTAATTATTTTTTTAAAATAAAAAA
1 TTAATTAAATTTAAAAAATTTAAATTAATAAATTAAAATATTAATTATTTTTTT-AAATAAAAAA
932326 T
65 T
*
932327 TAAATTAAA
1 TTAATTAAA
932336 AGCATTTATT
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
63 20 0.31
64 7 0.11
65 7 0.11
66 23 0.35
67 8 0.12
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.45
Consensus pattern (65 bp):
TTAATTAAATTTAAAAAATTTAAATTAATAAATTAAAATATTAATTATTTTTTTAAATAAAAAAT
Found at i:932316 original size:42 final size:38
Alignment explanation
Indices: 932282--932450 Score: 120
Period size: 38 Copynumber: 4.4 Consensus size: 38
932272 TAAAAAATTT
932282 AAATTAATAAATTAAAATATTAATTATTTTTTTAAAATAA
1 AAATTAATAAATTAAAATATTAATTA-TTTTTTAAAA-AA
* * * ** *
932322 AAA--ATTAAATTAAAAGCATTTATTATTATTTTTTAACA
1 AAATTAATAAATTAAAA-TATTAATTATT-TTTTAAAAAA
* **
932360 AAATTAA-AAA-TAATAT-TTAATTA-ACTTTAAAAAA
1 AAATTAATAAATTAAAATATTAATTATTTTTTAAAAAA
*
932394 ATTTATATTAATAAATTAAAATATTAATTATTTTTTAAAATA
1 A---A-ATTAATAAATTAAAATATTAATTATTTTTTAAAAAA
932436 AAA--AATAAATTAAAA
1 AAATTAATAAATTAAAA
932451 AGGGTTTATT
Statistics
Matches: 98, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
34 7 0.07
36 18 0.18
37 1 0.01
38 27 0.28
39 20 0.20
40 9 0.09
41 7 0.07
42 9 0.09
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (38 bp):
AAATTAATAAATTAAAATATTAATTATTTTTTAAAAAA
Found at i:932385 original size:115 final size:114
Alignment explanation
Indices: 932248--932643 Score: 468
Period size: 118 Copynumber: 3.4 Consensus size: 114
932238 ATTATTATTT
* *
932248 TTAATAAAAATATTTAATTAACTTTAAAAAATTTAAATTAATAAATTAAAATATTAATTATTTTT
1 TTAA-AAAAATATTTAATTAACTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTTTT
* *
932313 TTAAAATAAAAAATTAAATTAAAAGCATTTATTATTATTTTTTAACAAAA
65 TTAAAATAAAAAATTAAATTAAAAGTATTTATTATTATTTTTTAATAAAA
* *
932363 TTAAAAATAATATTTAATTAACTTTAAAAAAATTTATATTAATAAATTAAAATATTAATTA-TTT
1 TTAAAAA-AATATTTAATTAACTTT-AAAAAATTTACATTAACAAATTAAAATATTAATTATTTT
*
932427 TTTAAAATAAAAAA-TAAATTAAAAAGGGTTTATTATTATTATTTTTTAATAAAA
64 TTTAAAATAAAAAATTAAATT-AAAA--GTAT-TTATTATTATTTTTTAATAAAA
* *
932481 TTAAAAATAATATTTAATTAAGTTTTAAAAAA-TTACATAAACAAATTAAAATATTAATTATTAT
1 TTAAAAA-AATATTTAATTAA-CTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATT-T
* * * ** *
932545 TTTT--TAT-AAAAATGAAAAGTATTTATTA-TTATTATTATTTTTTAATAAAA
63 TTTTAAAATAAAAAAT-TAAATTA-AAAGTATTTATTATTATTTTTTAATAAAA
*
932595 -T-AAAAAATATTTAATTAAATTTTAAAAAATTTACATTAACAAATTAAAA
1 TTAAAAAAATATTTAATT-AACTTTAAAAAATTTACATTAACAAATTAAAA
932644 AAATAACATT
Statistics
Matches: 251, Mismatches: 16, Indels: 31
0.84 0.05 0.10
Matches are distributed among these distances:
111 21 0.08
112 24 0.10
113 1 0.00
114 31 0.12
115 42 0.17
116 40 0.16
117 30 0.12
118 54 0.22
119 8 0.03
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (114 bp):
TTAAAAAAATATTTAATTAACTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTTTTT
TAAAATAAAAAATTAAATTAAAAGTATTTATTATTATTTTTTAATAAAA
Found at i:932583 original size:38 final size:39
Alignment explanation
Indices: 932532--932607 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
932522 CAAATTAAAA
* *
932532 TATTAATTATTATTTTTT-ATAAAAATGAAAAGTATTTAT
1 TATTAATTATTATTTTTTAAT-AAAATAAAAAATATTTAT
932571 TATT-ATTATTATTTTTTAATAAAATAAAAAATATTTA
1 TATTAATTATTATTTTTTAATAAAATAAAAAATATTTA
932608 ATTAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 28 0.82
39 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (39 bp):
TATTAATTATTATTTTTTAATAAAATAAAAAATATTTAT
Found at i:932641 original size:22 final size:22
Alignment explanation
Indices: 932616--932679 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
932606 TAATTAAATT
932616 TTAAAAAATTTACATTAACAAA
1 TTAAAAAATTTACATTAACAAA
* * *
932638 TTAAAAAAATAACATTTAAGAAA
1 TTAAAAAATTTACA-TTAACAAA
932661 TTAAAAAAATTTATCATTA
1 TT-AAAAAATTTA-CATTA
932680 TTCTAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
22 12 0.35
23 9 0.26
24 11 0.32
25 2 0.06
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (22 bp):
TTAAAAAATTTACATTAACAAA
Found at i:932644 original size:23 final size:23
Alignment explanation
Indices: 932618--932679 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
932608 ATTAAATTTT
932618 AAAAAATTTACATTAACAAATTA
1 AAAAAATTTACATTAACAAATTA
* *
932641 AAAAAA-TAACATTTAAGAAATTA
1 AAAAAATTTACA-TTAACAAATTA
932664 AAAAAATTTATCATTA
1 AAAAAATTTA-CATTA
932680 TTCTAATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
22 4 0.12
23 22 0.67
24 5 0.15
25 2 0.06
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (23 bp):
AAAAAATTTACATTAACAAATTA
Found at i:932968 original size:18 final size:19
Alignment explanation
Indices: 932933--932975 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
932923 ATATTTTCTC
*
932933 AAAAATATTTTTAAATAATA
1 AAAAATATTATT-AATAATA
932953 AAAAATATTATT-ATAATA
1 AAAAATATTATTAATAATA
932971 AAAAA
1 AAAAA
932976 CTTTTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
20 11 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATATTATTAATAATA
Found at i:933119 original size:124 final size:126
Alignment explanation
Indices: 932962--933441 Score: 607
Period size: 124 Copynumber: 3.9 Consensus size: 126
932952 AAAAAATATT
* *
932962 ATTATAATAAAAAACTTTTTT-TAATTTAAAATTTTTTA-TTTGA-AAAAACATAATAATTAATA
1 ATTATAATAAAAAACTTTTTTATATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATA
*
933024 TTTTAATTTGTTAATGTAAATTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAA
66 TTTTAATTTGTTAATGT-AATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAA
* * *
933086 ATTATAGTAAAAAACATTTTTA-ATTTTAAAATTTTTTATTTTTATAAAAATATAATAATTAATA
1 ATTATAATAAAAAACTTTTTTATATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATA
933150 TTTTAATTTGTTAATGTAATTTTTTAAA-TTAATTAAATATTATTTTTAATTTTATTAAAA
66 TTTTAATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAA
**** *
933210 ATTATAAT-AATTTTTTTTTTATATTTTAAAATATTTTATTTTTATAAAAACATAATAATTAATA
1 ATTATAATAAAAAACTTTTTTATATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATA
933274 TTTTAATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAA
66 TTTTAATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAA
* * * * **
933335 A-AATAATAATAAAGCCTTTTTATTTTTGTTTAATTTTTT-TATTTT-T-------TAA-AATTA
1 ATTATAATAA-AAAACTTTTTTATATTT-TAAAATTTTTTAT-TTTTATAAAAACATAATAATTA
* * *
933389 ATATTTTAATTTGTTAATATAAATTTTTTTAAAGTTAATGAAATATTATTTTT
63 ATATTTTAATTTGTTAATGT-AA-TTTTTTAAACTTAATTAAATATTATTTTT
933442 TATTAAAAAT
Statistics
Matches: 318, Mismatches: 27, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
118 24 0.08
119 5 0.02
120 27 0.08
123 8 0.03
124 145 0.46
125 49 0.15
126 48 0.15
127 12 0.04
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (126 bp):
ATTATAATAAAAAACTTTTTTATATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATA
TTTTAATTTGTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAA
Found at i:933195 original size:22 final size:22
Alignment explanation
Indices: 933170--933214 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
933160 TTAATGTAAT
*
933170 TTTTTAAATTAATTAAATATTA
1 TTTTTAAATTAATTAAAAATTA
* *
933192 TTTTTAATTTTATTAAAAATTA
1 TTTTTAAATTAATTAAAAATTA
933214 T
1 T
933215 AATAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTTAAATTAATTAAAAATTA
Found at i:933227 original size:31 final size:29
Alignment explanation
Indices: 933166--933227 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 29
933156 TTTGTTAATG
933166 TAATTTTTTAAATTAATTAAATATTATTTT
1 TAATTTTTTAAA-TAATTAAATATTATTTT
*
933196 TAATTTTATTAAA-AATTATAATAATTTTTTT
1 TAATTTT-TTAAATAATTA-AAT-ATTATTTT
933227 T
1 T
933228 TTATATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 5 0.18
30 10 0.36
31 13 0.46
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (29 bp):
TAATTTTTTAAATAATTAAATATTATTTT
Found at i:933395 original size:22 final size:22
Alignment explanation
Indices: 933364--933419 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
933354 TTATTTTTGT
*
933364 TTAATTTTTTTATTTTTTAAAA
1 TTAATTTTTTTATTTGTTAAAA
* * *
933386 TTAATATTTTAATTTGTTAATA
1 TTAATTTTTTTATTTGTTAAAA
*
933408 TAAATTTTTTTA
1 TTAATTTTTTTA
933420 AAGTTAATGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTAATTTTTTTATTTGTTAAAA
Found at i:933488 original size:249 final size:242
Alignment explanation
Indices: 932986--933457 Score: 609
Period size: 249 Copynumber: 1.9 Consensus size: 242
932976 CTTTTTTTAA
*
932986 TTTAAAATTTTTTATTTGAAAAAACATAATAATTAATATTTTAATTTGTTAATGTAAATTTTTTA
1 TTTAAAATATTTTATTTGAAAAAACATAATAATTAATATTTTAATTTGTTAATGTAAATTTTTTA
* * *
933051 AACTTAATTAAATATTATTTTTTATTTTATTAAAAATTATAGTAAAAAACATTTTTAATTTTAAA
66 AACTTAATTAAATATTATTTTTAATTTTATTAAAAATAATAATAAAAAACATTTTTAATTTT---
* * *
933116 ATTTTTTATTTTTATAAAAATATAATAATTAATATTTTAATTTGTTAATGTAATTTTTTAAATTA
128 ATGTTTAATTTTTATAAAAATATAATAATTAATATTTTAATTTGTTAATATAATTTTTTAAATTA
* * *
933181 ATTAAATATTATTTTTAATTTTATTAAAAATTATAATAATTTTTTTTTTATAT
193 ATGAAATATTA--TTT-ATTTTATTAAAAATTATAATAATTTTTTTTTAAAAT
*
933234 TTTAAAATATTTTATTTTTATAAAAACATAATAATTAATATTTTAATTTGTTAATGT-AATTTTT
1 TTTAAAATATTTTA-TTTGA-AAAAACATAATAATTAATATTTTAATTTGTTAATGTAAATTTTT
* *
933298 TAAACTTAATTAAATATTATTTTTAATTTTATTAAAAA-AATAATAATAAAGCCTTTTT-ATTTT
64 TAAACTTAATTAAATATTATTTTTAATTTTATTAAAAATAATAATAA-AAAACATTTTTAATTTT
* *** *
933361 -TGTTTAATTTTT-TTATTTTTTAA-AATTAATATTTTAATTTGTTAATATAAATTTTTTTAAAG
128 ATGTTTAATTTTTATAAAAATATAATAATTAATATTTTAATTTGTTAATAT-AA-TTTTTTAAA-
*
933423 TTAATGAAATATTA-TT-TTTTATTAAAAATGATAAT
190 TTAATGAAATATTATTTATTTTATTAAAAATTATAAT
933458 TAATACATTA
Statistics
Matches: 201, Mismatches: 17, Indels: 20
0.84 0.07 0.08
Matches are distributed among these distances:
240 18 0.09
242 26 0.13
243 8 0.04
244 19 0.09
245 13 0.06
248 24 0.12
249 57 0.28
250 36 0.18
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (242 bp):
TTTAAAATATTTTATTTGAAAAAACATAATAATTAATATTTTAATTTGTTAATGTAAATTTTTTA
AACTTAATTAAATATTATTTTTAATTTTATTAAAAATAATAATAAAAAACATTTTTAATTTTATG
TTTAATTTTTATAAAAATATAATAATTAATATTTTAATTTGTTAATATAATTTTTTAAATTAATG
AAATATTATTTATTTTATTAAAAATTATAATAATTTTTTTTTAAAAT
Found at i:933930 original size:18 final size:20
Alignment explanation
Indices: 933898--933938 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
933888 ATAAATAAGA
*
933898 GTTCATCATTGTTACTT-TT
1 GTTCATCATTCTTACTTCTT
933917 GTTC-TCATTCTTACTTCTT
1 GTTCATCATTCTTACTTCTT
933936 GTT
1 GTT
933939 GTTTTCTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.12, C:0.20, G:0.10, T:0.59
Consensus pattern (20 bp):
GTTCATCATTCTTACTTCTT
Found at i:936005 original size:385 final size:385
Alignment explanation
Indices: 935295--936066 Score: 1499
Period size: 385 Copynumber: 2.0 Consensus size: 385
935285 ACATGACTTC
935295 TTACAAGAAGGCATGAATAGCAAAGCAAAAAGCAATTGCTCGAGTATTTGGAGATTGGGATAAAT
1 TTACAAGAAGGCATGAATAGCAAAGCAAAAAGCAATTGCTCGAGTATTTGGAGATTGGGATAAAT
935360 CATACAACGATTTGCCAAAATGGTTAGTTGCAATGCAACATTTTGTTCCCGGTACAATTGTAGAA
66 CATACAACGATTTGCCAAAATGGTTAGTTGCAATGCAACATTTTGTTCCCGGTACAATTGTAGAA
935425 TTACAAACCATACCTGCATACAATGGTTCTGAAATGGTTTATGGTAAGTGTTTTTTCCATCGACT
131 TTACAAACCATACCTGCATACAATGGTTCTGAAATGGTTTATGGTAAGTGTTTTTTCCATCGACT
935490 GTTCTAGACATTTAAGTCTTGTATTCAAGGATTTCCTTTTTGTAAACCCATTGTACAAATAGATG
196 GTTCTAGACATTTAAGTCTTGTATTCAAGGATTTCCTTTTTGTAAACCCATTGTACAAATAGATG
*
935555 GTACATTTTTATATGTAAAATACAAAGGAACATTATTATTAGTTATTGCACAAGATGGAAATCAA
261 GTACATTTTTATATGTAAAATACAAAGGAACATTATTATTAGCTATTGCACAAGATGGAAATCAA
*
935620 AATATAGTGTCAATTGCTTTTGCCATTGTGGAAAGTGAGACGAGGGAGGCTTGGTCATTT
326 AATATAGTGTCAATTGCCTTTGCCATTGTGGAAAGTGAGACGAGGGAGGCTTGGTCATTT
*
935680 TTACAAGAAGGCATGGATAGCAAAGCAAAAAGCAATTGCTCGAGTATTTGGAGATTGGGATAAAT
1 TTACAAGAAGGCATGAATAGCAAAGCAAAAAGCAATTGCTCGAGTATTTGGAGATTGGGATAAAT
935745 CATACAACGATTTGCCAAAATGGTTAGTTGCAATGCAACATTTTGTTCCCGGTACAATTGTAGAA
66 CATACAACGATTTGCCAAAATGGTTAGTTGCAATGCAACATTTTGTTCCCGGTACAATTGTAGAA
*
935810 TTGCAAACCATACCTGCATACAATGGTTCTGAAATGGTTTATGGTAAGTGTTTTTTCCATCGACT
131 TTACAAACCATACCTGCATACAATGGTTCTGAAATGGTTTATGGTAAGTGTTTTTTCCATCGACT
935875 GTTCTAGACATTTAAGTCTTGTATTCAAGGATTTCCTTTTTGTAAACCCATTGTACAAATAGATG
196 GTTCTAGACATTTAAGTCTTGTATTCAAGGATTTCCTTTTTGTAAACCCATTGTACAAATAGATG
*
935940 GTACATTTTTATATGTAAAATACAAAGGAACATTATTATTAGCTGTTGCACAAGATGGAAATCAA
261 GTACATTTTTATATGTAAAATACAAAGGAACATTATTATTAGCTATTGCACAAGATGGAAATCAA
936005 AATATAGTGTCAATTGCCTTTGCCATTGTGGAAAGTGAGACGAGGGAGGCTTGGTCATTT
326 AATATAGTGTCAATTGCCTTTGCCATTGTGGAAAGTGAGACGAGGGAGGCTTGGTCATTT
936065 TT
1 TT
936067 CCTCGATAGA
Statistics
Matches: 382, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
385 382 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (385 bp):
TTACAAGAAGGCATGAATAGCAAAGCAAAAAGCAATTGCTCGAGTATTTGGAGATTGGGATAAAT
CATACAACGATTTGCCAAAATGGTTAGTTGCAATGCAACATTTTGTTCCCGGTACAATTGTAGAA
TTACAAACCATACCTGCATACAATGGTTCTGAAATGGTTTATGGTAAGTGTTTTTTCCATCGACT
GTTCTAGACATTTAAGTCTTGTATTCAAGGATTTCCTTTTTGTAAACCCATTGTACAAATAGATG
GTACATTTTTATATGTAAAATACAAAGGAACATTATTATTAGCTATTGCACAAGATGGAAATCAA
AATATAGTGTCAATTGCCTTTGCCATTGTGGAAAGTGAGACGAGGGAGGCTTGGTCATTT
Found at i:937903 original size:13 final size:13
Alignment explanation
Indices: 937885--937909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
937875 CTTTTTACCA
937885 TGTATCGATACAT
1 TGTATCGATACAT
937898 TGTATCGATACA
1 TGTATCGATACA
937910 AATGTCCCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:938004 original size:19 final size:19
Alignment explanation
Indices: 937959--938014 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
937949 TTGCCAGTTT
*
937959 CATGTATCGATACAATTAAG
1 CATGTATCGATACAA-TGAG
*
937979 TATGTATCGATACAATGAG
1 CATGTATCGATACAATGAG
*
937998 CATGTATAGATACAATG
1 CATGTATCGATACAATG
938015 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:938590 original size:243 final size:243
Alignment explanation
Indices: 938156--938628 Score: 813
Period size: 243 Copynumber: 1.9 Consensus size: 243
938146 TTTACTTGAA
*
938156 AACATTCGATTTAAGGCTTGAAAACACTTATATGAAACTCTAAAACATTTTTGATATTGAAATTC
1 AACATTCGATTTAAGGCTTAAAAACACTTATATGAAACTCTAAAACATTTTTGATATTGAAATTC
* * * *
938221 ACTTAGAACACGGTTTTAGAATATTTTTGAAAGAATAAAACTTGTTTATGGTTTTTCAAATCTTT
66 ACTTAGAACACAGTTTTAGAATATTTTTAAAAGAATAAAACTTGTTTACGATTTTTCAAATCTTT
*
938286 TTCCGATTTTATTCATATTTTGTTATATCAAAAGCAAGATCCTAATAATCTCTCCCTTTTTGATA
131 TTCCGATTTTATTCATACTTTGTTATATCAAAAGCAAGATCCTAATAATCTCTCCCTTTTTGATA
*
938351 TAACAAAACTTTAAAAATAAATTTGGTTGATTTTAAAACACTTATAGC
196 TAACAAAACTTTAAAAATAAATTTGGTTGACTTTAAAACACTTATAGC
938399 AACATTCGATTTAAGGCTTAAAAACACTTATATGAAACTCTAAAACATTTTTGATATTGAAATTC
1 AACATTCGATTTAAGGCTTAAAAACACTTATATGAAACTCTAAAACATTTTTGATATTGAAATTC
*
938464 ACTTAGAACACAGTTTTAGAGTATTTTTAAAAGAATAAAACTTGTTTACGATTTTTCAAATCTTT
66 ACTTAGAACACAGTTTTAGAATATTTTTAAAAGAATAAAACTTGTTTACGATTTTTCAAATCTTT
** *
938529 TTTTGATTTTATTTATACTTTGTTATATCAAAAGCAAGATCCTAATAATCTC-CCTCTTTTTGAT
131 TTCCGATTTTATTCATACTTTGTTATATCAAAAGCAAGATCCTAATAATCTCTCC-CTTTTTGAT
* *
938593 ATAATAAAATTTTAAAAATAAATTTGGTTGACTTTA
195 ATAACAAAACTTTAAAAATAAATTTGGTTGACTTTA
938629 CTCTTTATTG
Statistics
Matches: 216, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
242 2 0.01
243 214 0.99
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (243 bp):
AACATTCGATTTAAGGCTTAAAAACACTTATATGAAACTCTAAAACATTTTTGATATTGAAATTC
ACTTAGAACACAGTTTTAGAATATTTTTAAAAGAATAAAACTTGTTTACGATTTTTCAAATCTTT
TTCCGATTTTATTCATACTTTGTTATATCAAAAGCAAGATCCTAATAATCTCTCCCTTTTTGATA
TAACAAAACTTTAAAAATAAATTTGGTTGACTTTAAAACACTTATAGC
Found at i:947086 original size:19 final size:19
Alignment explanation
Indices: 947043--947113 Score: 106
Period size: 19 Copynumber: 3.7 Consensus size: 19
947033 CTGCCAGTTT
*
947043 CATGTATCGATACAATTGAG
1 CATGTATCGATACGA-TGAG
* *
947063 TATGTATCGATATGATGAG
1 CATGTATCGATACGATGAG
947082 CATGTATCGATACGATGAG
1 CATGTATCGATACGATGAG
947101 CATGTATCGATAC
1 CATGTATCGATAC
947114 AAAGCATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 34 0.74
20 12 0.26
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (19 bp):
CATGTATCGATACGATGAG
Found at i:948353 original size:297 final size:295
Alignment explanation
Indices: 947811--948455 Score: 1011
Period size: 297 Copynumber: 2.2 Consensus size: 295
947801 AAGTTGAGGA
** *
947811 AAATTTTTTCTTGGTCATTTTACTGATAAAGGAAAGCTCGTATTTAAGTCGTTACTAAAAAATGA
1 AAATTTTTTCTTGGTCATTTTACAAATAAAGGAAAGCTCGTATTTAAGTCGTTACTAAAAAATAA
* *
947876 AATGCGTGTGATCTGTAAATTCGAAATAAGTCGTTATCGAAAAAAGTAATTCATTGTTGGCTAAC
66 AAT-CGTGTGATCTGTAAATTCGAAATAAGTCATTATCGAAAAAAGTAAATCATTGTTGGCTAAC
947941 ATAAATTTAAGTTATATCAATTATAAAAATAATACATGTACAATATTAATTAATTTAAAAAATAA
130 ATAAATTTAAGTTATATCAATTATAAAAATAATACATGTACAATATTAATTAATTTAAAAAATAA
*
948006 ATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAAT-TCATGCATAA
195 ATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATAT-ATGCACAA
* *
948070 TATTAATTAATTTTAATAAAAATAATACATGTATAAT
259 TATTAATTAATTTTAATAAAAATAATACATATACAAT
* *
948107 AAATTTTTTCTTGGTCATTTTACAAATAAAGGAAAGTTCGTATTTAAGTCGTTATTAAAAAATAA
1 AAATTTTTTCTTGGTCATTTTACAAATAAAGGAAAGCTCGTATTTAAGTCGTTACTAAAAAATAA
948172 AAT-GTGTGCATCTGTAAA-TCTGAAATAAGTCATTATCGAAAAAAGTAAAAT-ATTGTTGGCTA
66 AATCGTGTG-ATCTGTAAATTC-GAAATAAGTCATTATCGAAAAAAGT-AAATCATTGTTGGCTA
*
948234 ACAT-AATTTAAGTTTTATCAATTATAAAAATAATACATGTACAATATTAATTAATTTTAATAAA
128 ACATAAATTTAAGTTATATCAATTATAAAAATAATACATGTACAATATTAATTAA-TTT-A-AAA
*
948298 AATAAATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATATATGT
190 AATAAATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATATATGC
948363 ACAATATTAATTAATTTTAATAAAAATAATACATATACAAT
255 ACAATATTAATTAATTTTAATAAAAATAATACATATACAAT
* * *
948404 AAATATTTTCTTGGTCA-TTTA-AAGATAAA--AAAACTCGTATTTAAGTCATTAC
1 AAATTTTTTCTTGGTCATTTTACAA-ATAAAGGAAAGCTCGTATTTAAGTCGTTAC
948456 CGAAATATAA
Statistics
Matches: 324, Mismatches: 17, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
294 75 0.23
295 53 0.16
296 76 0.23
297 119 0.37
298 1 0.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.38
Consensus pattern (295 bp):
AAATTTTTTCTTGGTCATTTTACAAATAAAGGAAAGCTCGTATTTAAGTCGTTACTAAAAAATAA
AATCGTGTGATCTGTAAATTCGAAATAAGTCATTATCGAAAAAAGTAAATCATTGTTGGCTAACA
TAAATTTAAGTTATATCAATTATAAAAATAATACATGTACAATATTAATTAATTTAAAAAATAAA
TTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATATATGCACAATA
TTAATTAATTTTAATAAAAATAATACATATACAAT
Found at i:948655 original size:23 final size:23
Alignment explanation
Indices: 948629--948724 Score: 74
Period size: 23 Copynumber: 4.3 Consensus size: 23
948619 TAGCTTAATT
*
948629 TTTTTAAATTTAATTAAATATTA
1 TTTTTAAATTTAATTAAATATAA
* *
948652 TTTTT-AATTTTA-TAAAAATAA
1 TTTTTAAATTTAATTAAATATAA
** * *
948673 TAATTAAGATATT-ATTTATTA-AA
1 TTTTTAA-AT-TTAATTAAATATAA
*
948696 TTTTTAAATTTAATTAAATATTA
1 TTTTTAAATTTAATTAAATATAA
948719 TTTTTA
1 TTTTTA
948725 TTATAAAATA
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
21 12 0.22
22 15 0.28
23 22 0.41
24 5 0.09
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (23 bp):
TTTTTAAATTTAATTAAATATAA
Found at i:948660 original size:32 final size:32
Alignment explanation
Indices: 948623--948724 Score: 125
Period size: 32 Copynumber: 3.1 Consensus size: 32
948613 AAATCATAGC
948623 TTAATTTTTTTAAATTTAATTAAATATTATTT
1 TTAATTTTTTTAAATTTAATTAAATATTATTT
** *
948655 TTAATTTTATAAAAATAATAATTAAGATATTATTT
1 TTAATTTT-TTTAAAT-TTAATTAA-ATATTATTT
*
948690 ATTAA-ATTTTTAAATTTAATTAAATATTATTT
1 -TTAATTTTTTTAAATTTAATTAAATATTATTT
948722 TTA
1 TTA
948725 TTATAAAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
31 3 0.05
32 17 0.29
33 12 0.20
34 12 0.20
35 11 0.19
36 4 0.07
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (32 bp):
TTAATTTTTTTAAATTTAATTAAATATTATTT
Found at i:948719 original size:28 final size:27
Alignment explanation
Indices: 948695--948771 Score: 84
Period size: 31 Copynumber: 2.7 Consensus size: 27
948685 TATTTATTAA
948695 ATTTTTAAATTTAATTAA-ATATTATT
1 ATTTTTAAATTTAATTAATATATTATT
* *
948721 TTTATTATAAAATAATAATTAATATATTATT
1 ATT-TT-T-AAAT-TTAATTAATATATTATT
948752 ATTTCTTAAATTTAATTAAT
1 ATTT-TTAAATTTAATTAAT
948772 TTATAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 2 0.05
27 2 0.05
28 9 0.22
29 8 0.20
30 9 0.22
31 11 0.27
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (27 bp):
ATTTTTAAATTTAATTAATATATTATT
Found at i:948774 original size:67 final size:66
Alignment explanation
Indices: 948629--948751 Score: 207
Period size: 67 Copynumber: 1.9 Consensus size: 66
948619 TAGCTTAATT
948629 TTTTTAAATTTAATTAAATATTATTTTTAATTTTATAAAAATAATAATTAAGATATTATTTATTA
1 TTTTTAAATTTAATTAAATATTATTTTTAA-TTTATAAAAATAATAATTAAGATATTATTTATTA
948694 AA
65 AA
*
948696 TTTTTAAATTTAATTAAATATTATTTTT-A-TTAT-AAAATAATAATTAATATATTATT
1 TTTTTAAATTTAATTAAATATTATTTTTAATTTATAAAAATAATAATTAAGATATTATT
948752 ATTTCTTAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
63 22 0.40
64 4 0.07
66 1 0.02
67 28 0.51
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.54
Consensus pattern (66 bp):
TTTTTAAATTTAATTAAATATTATTTTTAATTTATAAAAATAATAATTAAGATATTATTTATTAA
A
Found at i:949060 original size:21 final size:21
Alignment explanation
Indices: 949011--949053 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
949001 CTAGTAACGG
949011 TGAAATTA-ATTATTATAATAA
1 TGAAATTAGA-TATTATAATAA
*
949032 TGAAATTAGATATTATAGTAA
1 TGAAATTAGATATTATAATAA
949053 T
1 T
949054 TATATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (21 bp):
TGAAATTAGATATTATAATAA
Found at i:950094 original size:18 final size:18
Alignment explanation
Indices: 950071--950116 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
950061 CTACAAGATT
*
950071 ATGAAACAAATAACTTGA
1 ATGAAACAAATAACATGA
* **
950089 ATGAAATAAATGTCATGA
1 ATGAAACAAATAACATGA
950107 ATGAAACAAA
1 ATGAAACAAA
950117 CTACACGAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (18 bp):
ATGAAACAAATAACATGA
Found at i:952282 original size:334 final size:332
Alignment explanation
Indices: 951925--952691 Score: 990
Period size: 334 Copynumber: 2.3 Consensus size: 332
951915 AAATATTTTT
* *
951925 GGGATGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAATTATTATTATTTATTTTATATTAA
1 GGGA-GATTTTTCTTGGTTTTTAATTTTTAAAATCCATCAAATATTATTATTTATTTTATATTAA
* * *
951990 ATTAATTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAA-ATTTTCGCTTAAAATTTTCCT-A
65 ATTAATTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATATTTTC-CTTAAAATTTCCCTGA
* * *
952053 TTTTCAAAAAAAGGAGTTTTT-TACTTCGTAAATTTTTT-TGAGGAGATTTTTTTTCAGTTTTTA
129 TTTTCAAAAAAA--AGTTTTTCTACTTCGTAAATTTTTTCAG-GGAGATTTTTCTT-AGTTTTCA
* * * * * * *
952116 ATTTTGAAAATTTATCAAATATTATTATTTATTTCATAATAAATTATTTTTAAGAATTACATTTA
190 ATTTTGAAAATTCATAAAATATTATTATTTATTTCATAATAAATCAGTTTTAAAAAATACATTCA
*
952181 TTTT-CACGAGTTTTTGATTTTTTTCTTGAAATT-TCCTATTTTTGAAAAACGAAGTTTTCAACT
255 TTTTGCA--AGTTTTTGATTTTTTCCTTGAAATTCTCCT-TTTTTGAAAAACGAAGTTTTCAACT
952244 CCATAATTTATTTCGG
317 CCATAATTTATTTCGG
* *
952260 GGGAGATTTTTCTTAGTTTTTAATTTTTAAAATCCATAAAATATTATTATTTATTTTATATTAAA
1 GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATCCATCAAATATTATTATTTATTTTATATTAAA
* * * * * * * *
952325 TCAATTTTTAAAAATTCATTTATTTTTATGGGTTTTTGAATTTTTTCTTTGAAATTTCCCTGTTT
66 TTAATTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATATTTTCCTTAAAATTTCCCTGATT
* * * * *
952390 TTGAAAAACAATTTTTTCTACTTCGTAAATTTTTTCAGGGAGATTTTTCTTGGTTTTCAATTTTT
131 TTCAAAAAAAAGTTTTTCTACTTCGTAAATTTTTTCAGGGAGATTTTTCTTAGTTTTCAATTTTG
* * *
952455 AAAATTCATAAAATATTATTATTTATTTCTTAATAAATCAGTTTTAAAAAATGCATTCATTTTGT
196 AAAATTCATAAAATATTATTATTTATTTCATAATAAATCAGTTTTAAAAAATACATTCATTTTGC
* * *
952520 AAGTTTTTGATTTTTTCCTTGAAATTCTCCTTTTTTGAAAAATGGAGTTTTCTACTCCATAATTT
261 AAGTTTTTGATTTTTTCCTTGAAATTCTCCTTTTTTGAAAAACGAAGTTTTCAACTCCATAATTT
*
952585 ATTTTGG
326 ATTTCGG
* * * *
952592 GGG-GATTTTTTTTGGTTTTTCATTTTTAAAATCCATCAAATAGTACTATTTATTTTATATTAAA
1 GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATCCATCAAATATTATTATTTATTTTATATTAAA
* * * *
952656 TTATTTTTTAAAAACTCCTTCATGTTCATGAGTTTT
66 TTAATTTTTAAAAATTCATTCATTTTCATGAGTTTT
952692 AGATTTTTTC
Statistics
Matches: 374, Mismatches: 52, Indels: 16
0.85 0.12 0.04
Matches are distributed among these distances:
331 83 0.22
332 64 0.17
333 75 0.20
334 132 0.35
335 20 0.05
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (332 bp):
GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATCCATCAAATATTATTATTTATTTTATATTAAA
TTAATTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATATTTTCCTTAAAATTTCCCTGATT
TTCAAAAAAAAGTTTTTCTACTTCGTAAATTTTTTCAGGGAGATTTTTCTTAGTTTTCAATTTTG
AAAATTCATAAAATATTATTATTTATTTCATAATAAATCAGTTTTAAAAAATACATTCATTTTGC
AAGTTTTTGATTTTTTCCTTGAAATTCTCCTTTTTTGAAAAACGAAGTTTTCAACTCCATAATTT
ATTTCGG
Found at i:952311 original size:166 final size:164
Alignment explanation
Indices: 951925--952747 Score: 818
Period size: 167 Copynumber: 4.9 Consensus size: 164
951915 AAATATTTTT
*
951925 GGGATGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAATTATTATTATTTATTTTATATTAA
1 GGGA-GATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTTATATTAA
* * ** *
951990 ATTAATTTTCAAAAATTCATTCATTTTCATAAGTTTTTGAAATTTTCGCTTAAAATTTTCCTATT
65 ATT-ATTTTTAAAAATTCATTCATTTTCATGAGTTTTTG-AATTTTTTCTTGAAA-TTTCCTATT
** * * * * * *
952055 TTCAAAAAAAGGAGTTTTTTACTTCGTAAATTTTTT-TG
127 TTTGAAAAACGAAGTTTTCTACTCCAT-AATTTTTTCGG
* * * * * * *
952093 AGGAGATTTTTTTTCAGTTTTTAATTTTGAAAATTTATCAAATATTATTATTTATTTCATAATAA
1 GGGAGATTTTTCTT-GGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTTATATTAA
* * * *
952158 ATTATTTTTAAGAATTACATTTATTTTCACGAGTTTTTGATTTTTTTCTTGAAATTTCCTATTTT
65 ATTATTTTTAAAAATT-CATTCATTTTCATGAGTTTTTGAATTTTTTCTTGAAATTTCCTATTTT
*
952223 TGAAAAACGAAGTTTTCAACTCCATAATTTATTTCGG
129 TGAAAAACGAAGTTTTCTACTCCATAATTT-TTTCGG
* * *
952260 GGGAGATTTTTCTTAGTTTTTAATTTTTAAAATCCATAAAATATTATTATTTATTTTATATTAAA
1 GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTTATATTAAA
* * * * *
952325 TCAATTTTTAAAAATTCATTTATTTTTATGGGTTTTTGAATTTTTTCTTTGAAATTTCCCTGTTT
66 T-TATTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTC-TTGAAATTT-CCTATTT
* * * *
952390 TTGAAAAAC-AATTTTTTCTACTTCGTAAATTTTTTC-A
128 TTGAAAAACGAA-GTTTTCTACTCCAT-AATTTTTTCGG
* * *
952427 GGGAGATTTTTCTTGGTTTTCAATTTTTAAAATTCATAAAATATTATTATTTATTTCT-TAATAA
1 GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTT-TATATTAA
* * * * *
952491 ATCAGTTTTAAAAAATGCATTCATTTT-GTAAGTTTTTG-ATTTTTTCCTTGAAATTCTCCT-TT
65 ATTA-TTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTT-CTTGAAATT-TCCTATT
* * *
952553 TTTGAAAAATGGAGTTTTCTACTCCATAATTTATTTTGG
127 TTTGAAAAACGAAGTTTTCTACTCCATAATTT-TTTCGG
* * * * *
952592 GGG-GATTTTTTTTGGTTTTTCATTTTTAAAATCCATCAAATAGTACTATTTATTTTATATTAAA
1 GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTTATATTAAA
* * * * ** *
952656 TTATTTTTTAAAAACTCCTTCATGTTCATGAGTTTTAG-ATTTTTTCTTTGAAATCCCCATTTTT
66 TTA-TTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTC-TTGAAATTTCC-TATTT
* * *
952720 TTAAAAAACTAAGTTTTCTATTCCATAA
128 TTGAAAAACGAAGTTTTCTACTCCATAA
952748 ATATTTCTGA
Statistics
Matches: 545, Mismatches: 89, Indels: 44
0.80 0.13 0.06
Matches are distributed among these distances:
163 6 0.01
164 98 0.18
165 50 0.09
166 141 0.26
167 146 0.27
168 99 0.18
169 5 0.01
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (164 bp):
GGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTTATATTAAA
TTATTTTTAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTCTTGAAATTTCCTATTTTTG
AAAAACGAAGTTTTCTACTCCATAATTTTTTCGG
Found at i:954582 original size:167 final size:165
Alignment explanation
Indices: 954172--954699 Score: 669
Period size: 167 Copynumber: 3.2 Consensus size: 165
954162 ATATTAATAA
* * ** * *
954172 TTTTTT-TAATCTTTTATATTTCTATGAGAATCCGTAAGGGAATTAAAGATTTCAAAAACGTTTC
1 TTTTTTCTAATCTTTTATA-TCCTATGGGGGTCCGTAAGGGAATAAAAGATTTCAAAAACTTTTC
* *
954236 GTATCTTTTTGGGTTTCCATTAAAGTACGAAATGGTATTTTTCAAAAATAAATAAAATTAAATT-
65 GTATCTTTGTGGGTTTCCATTAAAGTACGAAATAGTATTTTTCAAAAATAAATAAAATTAAATTA
**
954300 AAT----ACTTTCATAATTGAA-ATAAATATTAATAA-T
130 AATCAACACTTTCATAA-CCAAGATAAAT-TTAA-AATT
* * * *
954333 TTTTCT-TAATCTTTTATATCCTTATAGGGGTCCATAAGGGTATAAAAGATTTCAAAAACTTTTC
1 TTTTTTCTAATCTTTTATATCC-TATGGGGGTCCGTAAGGGAATAAAAGATTTCAAAAACTTTTC
* * * *
954397 GTATATTCGTGGGTTTCCATTAAGGTACGAAATAGTATTTTTCGAAAATAAATAAAATTAAATTA
65 GTATCTTTGTGGGTTTCCATTAAAGTACGAAATAGTATTTTTCAAAAATAAATAAAATTAAATTA
*
954462 AATCAACACTTTCGTAACCAAGATAAATTTAAAATT
130 AATCAACACTTTCATAACCAAGATAAATTTAAAATT
* *
954498 TTTTTTCTAATATTTTATAGTCCTATGGGGGTCCTGTAAGGGCATAAAAGATTTCAAAAACTTTT
1 TTTTTTCTAATCTTTTATA-TCCTATGGGGGTCC-GTAAGGGAATAAAAGATTTCAAAAACTTTT
* * * *
954563 CGTATCTTTGTGCGTTTCCATTAAAGTATGAAATAGTATTTTTCAAAAACAAATAAAATTAAATC
64 CGTATCTTTGTGGGTTTCCATTAAAGTACGAAATAGTATTTTTCAAAAATAAATAAAATTAAATT
954628 AAATCAACACTTTCATAACCAAGATAAATTTAAATATT
129 AAATCAACACTTTCATAACCAAGATAAATTTAAA-ATT
* *
954666 TCTTTTCTAATCTTTTATATTCCTATGGAGGTCC
1 TTTTTTCTAATCTTTTATA-TCCTATGGGGGTCC
954700 ATAGCAGTAT
Statistics
Matches: 318, Mismatches: 37, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
160 2 0.01
161 109 0.34
162 3 0.01
164 2 0.01
165 12 0.04
166 36 0.11
167 121 0.38
168 33 0.10
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (165 bp):
TTTTTTCTAATCTTTTATATCCTATGGGGGTCCGTAAGGGAATAAAAGATTTCAAAAACTTTTCG
TATCTTTGTGGGTTTCCATTAAAGTACGAAATAGTATTTTTCAAAAATAAATAAAATTAAATTAA
ATCAACACTTTCATAACCAAGATAAATTTAAAATT
Found at i:956875 original size:3 final size:3
Alignment explanation
Indices: 956861--956897 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
956851 CATTAAGGAC
*
956861 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
956898 GTGACTCAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (3 bp):
GAT
Found at i:957108 original size:24 final size:25
Alignment explanation
Indices: 957072--957118 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
957062 TTTAATTGTC
*
957072 CAAACCTAAAGAAGAAAGGCATGAG
1 CAAACCTAAAGAAGAAAGCCATGAG
957097 CAAACC-AAAGAAGAAAGCCATG
1 CAAACCTAAAGAAGAAAGCCATG
957119 GTAGCCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.53, C:0.19, G:0.21, T:0.06
Consensus pattern (25 bp):
CAAACCTAAAGAAGAAAGCCATGAG
Found at i:963354 original size:24 final size:23
Alignment explanation
Indices: 963308--963354 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
963298 TGATTAAAGG
* *
963308 AATTTGTTTTATTAAGGGGGAGA
1 AATTTGTTTTATTAAAGGCGAGA
*
963331 AATTTTTTTTAATTAAAGGCGAGA
1 AATTTGTTTT-ATTAAAGGCGAGA
963355 GAAAAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.40
Consensus pattern (23 bp):
AATTTGTTTTATTAAAGGCGAGA
Found at i:963382 original size:17 final size:17
Alignment explanation
Indices: 963360--963394 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
963350 CGAGAGAAAA
*
963360 GAAATTTTTTTATTAAG
1 GAAATTGTTTTATTAAG
963377 GAAATTGTTTTATTAAG
1 GAAATTGTTTTATTAAG
963394 G
1 G
963395 GGGAGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (17 bp):
GAAATTGTTTTATTAAG
Found at i:965329 original size:154 final size:155
Alignment explanation
Indices: 965035--965685 Score: 613
Period size: 156 Copynumber: 4.2 Consensus size: 155
965025 TCCTTATGTT
* * **
965035 TTTAAAT-CCTTCGGGGTATCGGGTACTTTTACGTCAAAGGTATCTCCTTGGGGGTATTTTCATA
1 TTTAAATCCCTTTGGGGTATCGGGTACTTTTACGTCAAA-G-ATATCCTTTAGGGTATTTTCATA
* * ** **
965099 ATTTTTTAGAACCAACTCCTAGGTCGTCATCAGGTCTGCTTTTATGCCGAAGGTAGATGCTTAGG
64 ATTTTTTAGAACCAACTCCTAGGTCGTCACCGGGTCCACTTTTATGCCGAAGGTAGATATTTAGG
*
965164 ATAGGTTCATCCC-TTCTAAAATCCTC
129 ATAGGTTCATCCCATTTTAAAATCCTC
* *
965190 TTTAAATCCCTTTGGGGTATCGGGTACTTTTACGTCAAAGTTATCCTTTAGGGTGTTTTCATAAT
1 TTTAAATCCCTTTGGGGTATCGGGTACTTTTACGTCAAAGATATCCTTTAGGGTATTTTCATAAT
*** * * * *
965255 TTTTTAGAACCAACTCCTAGGTCGTCGTTGGGTCCGCTTTTATGCTGAAGGTAGATGTTTATGAT
66 TTTTTAGAACCAACTCCTAGGTCGTCACCGGGTCCACTTTTATGCCGAAGGTAGATATTTAGGAT
*
965320 AGGTTCATCCC-TTTTAAAATTCTC
131 AGGTTCATCCCATTTTAAAATCCTC
* * * * *
965344 TTTAAATCCC-TTAGGG-AT-AGGTACTTTTACGTCAAAAATATCCCTTAGAGGTATTTTCGTAA
1 TTTAAATCCCTTTGGGGTATCGGGTACTTTTACGTCAAAGATATCCTTTAG-GGTATTTTCATAA
* * * * * * ** *
965406 TTTTCTAAAACCACCTCCTAGGTCGTCACCGAGTCCACTTTTATGCTGAAGGTGGGCATTTATGA
65 TTTTTTAGAACCAACTCCTAGGTCGTCACCGGGTCCACTTTTATGCCGAAGGTAGATATTTAGGA
*
965471 TAGGTTCA-CCCTATTTTATAATCCT-
130 TAGGTTCATCCC-ATTTTAAAATCCTC
* * * * * * * * *
965496 TTGT-AAGCCTTTTAGGGGAATCGAGTATTTTTACGTCGAAGATATCCCTTAAGAGCATTTTCAT
1 TT-TAAATCCCTTT-GGGGTATCGGGTACTTTTACGTCAAAGATAT-CCTTTAGGGTATTTTCAT
* * * * * **
965560 AATTTCTTAGAATCAAC-CCTTATGTCATCACTGGGTCCACTTTTATGCCGAAGAAAGATATTTA
63 AATTTTTTAGAACCAACTCC-TAGGTCGTCACCGGGTCCACTTTTATGCCGAAGGTAGATATTTA
* * * *
965624 GGGTAGGTTCATCCCA-GTTAAAGTCCTTT
127 GGATAGGTTCATCCCATTTTAAAATCC-TC
* *
965653 TTTAAAGTCCTTTTGGGGTATCAGGTACTTTTA
1 TTTAAA-TCCCTTTGGGGTATCGGGTACTTTTA
965686 TATTGAAGAT
Statistics
Matches: 406, Mismatches: 74, Indels: 30
0.80 0.15 0.06
Matches are distributed among these distances:
151 29 0.07
152 80 0.20
153 18 0.04
154 113 0.28
155 19 0.05
156 114 0.28
157 27 0.07
158 6 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (155 bp):
TTTAAATCCCTTTGGGGTATCGGGTACTTTTACGTCAAAGATATCCTTTAGGGTATTTTCATAAT
TTTTTAGAACCAACTCCTAGGTCGTCACCGGGTCCACTTTTATGCCGAAGGTAGATATTTAGGAT
AGGTTCATCCCATTTTAAAATCCTC
Found at i:965468 original size:152 final size:152
Alignment explanation
Indices: 965035--965576 Score: 535
Period size: 154 Copynumber: 3.5 Consensus size: 152
965025 TCCTTATGTT
** * * *
965035 TTTAAAT-CCTTCGGGGTATCGGGTACTTTTACGTCAAAGGTATCTCCTTGGGGGTATTTTCATA
1 TTTAAATCCCTTTAGGGTATCAGGTACTTTTACGTCAAAGATATC-CCTT-AGGGTATTTTCATA
* * * *
965099 ATTTTTTAGAACCAACTCCTAGGTCGTCATC-AGGTCTGCTTTTATGCCGAAGGTAGATGCTTAG
64 ATTTTTTAGAACCAACTCCTAGGTCGTCATCGA-GTCCGCTTTTATGCTGAAGGTGGAT--TTAT
965163 GATAGGTTCATCCCTTCTAAAATCCTC
126 GATAGGTTCATCCCTTCTAAAATCCTC
* * * * *
965190 TTTAAATCCCTTTGGGGTATCGGGTACTTTTACGTCAAAGTTATCCTTTAGGGTGTTTTCATAAT
1 TTTAAATCCCTTTAGGGTATCAGGTACTTTTACGTCAAAGATATCCCTTAGGGTATTTTCATAAT
* * * *
965255 TTTTTAGAACCAACTCCTAGGTCGTCGTTGGGTCCGCTTTTATGCTGAAGGTAGATGTTTATGAT
66 TTTTTAGAACCAACTCCTAGGTCGTCATCGAGTCCGCTTTTATGCTGAAGGTGGA--TTTATGAT
* *
965320 AGGTTCATCCCTTTTAAAATTCTC
129 AGGTTCATCCCTTCTAAAATCCTC
* *
965344 TTTAAATCCC-TTAGGG-AT-AGGTACTTTTACGTCAAAAATATCCCTTAGAGGTATTTTCGTAA
1 TTTAAATCCCTTTAGGGTATCAGGTACTTTTACGTCAAAGATATCCCTTAG-GGTATTTTCATAA
* * * * *
965406 TTTTCTAAAACCACCTCCTAGGTCGTCACCGAGTCCACTTTTATGCTGAAGGTGGGCATTTATGA
65 TTTTTTAGAACCAACTCCTAGGTCGTCATCGAGTCCGCTTTTATGCTGAAGGT-GG-ATTTATGA
* *
965471 TAGGTTCA-CCCTATTTTATAATCCT-
128 TAGGTTCATCCC--TTCTAAAATCCTC
* * * * * * *
965496 TTGT-AAGCCTTTTAGGGGAATC-GAGTATTTTTACGTCGAAGATATCCCTTAAGAGCATTTTCA
1 TT-TAAATCCCTTTA-GGGTATCAG-GTACTTTTACGTCAAAGATATCCCTT-AGGGTATTTTCA
* *
965559 TAATTTCTTAGAATCAAC
62 TAATTTTTTAGAACCAAC
965577 CCTTATGTCA
Statistics
Matches: 327, Mismatches: 44, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
151 29 0.09
152 79 0.24
153 20 0.06
154 105 0.32
155 13 0.04
156 79 0.24
157 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (152 bp):
TTTAAATCCCTTTAGGGTATCAGGTACTTTTACGTCAAAGATATCCCTTAGGGTATTTTCATAAT
TTTTTAGAACCAACTCCTAGGTCGTCATCGAGTCCGCTTTTATGCTGAAGGTGGATTTATGATAG
GTTCATCCCTTCTAAAATCCTC
Found at i:965659 original size:13 final size:13
Alignment explanation
Indices: 965641--965666 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
965631 TTCATCCCAG
965641 TTAAAGTCCTTTT
1 TTAAAGTCCTTTT
965654 TTAAAGTCCTTTT
1 TTAAAGTCCTTTT
965667 GGGGTATCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
TTAAAGTCCTTTT
Found at i:967573 original size:21 final size:21
Alignment explanation
Indices: 967549--967598 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
967539 CTATTATAAC
967549 CTTTATTTCCTT-TATTTTTTA
1 CTTTATTTCCTTCT-TTTTTTA
* *
967570 CTTTATTTTCTTCTTTTTTTC
1 CTTTATTTCCTTCTTTTTTTA
967591 CTTT-TTTC
1 CTTTATTTC
967599 TCTAACTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 21 0.84
22 1 0.04
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (21 bp):
CTTTATTTCCTTCTTTTTTTA
Found at i:969934 original size:10 final size:10
Alignment explanation
Indices: 969919--969943 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
969909 TGAAAATAAT
969919 AATAAAAATA
1 AATAAAAATA
969929 AATAAAAATA
1 AATAAAAATA
969939 AATAA
1 AATAA
969944 GGAAGAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AATAAAAATA
Found at i:970710 original size:21 final size:22
Alignment explanation
Indices: 970686--970729 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
970676 TTAAATTTAG
970686 TTCCATAAG-CTTTG-GATTAAT
1 TTCC-TAAGTCTTTGTGATTAAT
*
970707 TTCCTAAGTTTTTGTGATTAAT
1 TTCCTAAGTCTTTGTGATTAAT
970729 T
1 T
970730 ATTTGAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 8 0.40
22 8 0.40
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (22 bp):
TTCCTAAGTCTTTGTGATTAAT
Found at i:971616 original size:17 final size:18
Alignment explanation
Indices: 971575--971625 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
971565 ATGCATGAAT
* *
971575 TAAAAAAAAGAAATAAAGA
1 TAAAATAAA-AAATAAAAA
*
971594 TAAAATAGAAAATAAAAA
1 TAAAATAAAAAATAAAAA
971612 T-AAATAAAAAATAA
1 TAAAATAAAAAATAA
971626 GCAAATCCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 12 0.43
18 9 0.32
19 7 0.25
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (18 bp):
TAAAATAAAAAATAAAAA
Found at i:973032 original size:12 final size:12
Alignment explanation
Indices: 973011--973052 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
973001 TAACATGGAG
*
973011 AAAAAGAAGAAA
1 AAAAAAAAGAAA
*
973023 AAAAAAAAGACA
1 AAAAAAAAGAAA
*
973035 AAGAAAAAGAAA
1 AAAAAAAAGAAA
973047 AAAAAA
1 AAAAAA
973053 TGGTAGTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.86, C:0.02, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:975624 original size:23 final size:23
Alignment explanation
Indices: 975576--975628 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
975566 AATCTACTCT
* *
975576 AAAATCAGTCAATTACAGCCTCA
1 AAAATCAGTAAATTAAAGCCTCA
*
975599 AAAAGTCAGTAAATTAAATCCT--
1 AAAA-TCAGTAAATTAAAGCCTCA
975621 AAAATCAG
1 AAAATCAG
975629 CATATTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 4 0.15
22 4 0.15
23 4 0.15
24 14 0.54
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (23 bp):
AAAATCAGTAAATTAAAGCCTCA
Found at i:975703 original size:24 final size:25
Alignment explanation
Indices: 975672--975728 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
975662 CTGAGTTCTA
* *
975672 GGATTTTTTATTCCCTAATTTATAG
1 GGATTTTTCAGTCCCTAATTTATAG
* *
975697 GGATTTTTCAGTCTCTGATTTATAG
1 GGATTTTTCAGTCCCTAATTTATAG
975722 GGATTTT
1 GGATTTT
975729 CCAACAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.51
Consensus pattern (25 bp):
GGATTTTTCAGTCCCTAATTTATAG
Found at i:976034 original size:32 final size:32
Alignment explanation
Indices: 975965--976025 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
975955 TATAAATTCT
* *
975965 AGAATTTATTCCTTGATTAAAATGCAAGACCA
1 AGAATTAATTCCTTGATTAAAATGAAAGACCA
975997 AGAATTAATTCCTTGATTAAAATGAAAGA
1 AGAATTAATTCCTTGATTAAAATGAAAGA
976026 ATCGGAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.31
Consensus pattern (32 bp):
AGAATTAATTCCTTGATTAAAATGAAAGACCA
Found at i:980672 original size:78 final size:75
Alignment explanation
Indices: 980579--980761 Score: 203
Period size: 78 Copynumber: 2.4 Consensus size: 75
980569 CTCATTGATT
* * *
980579 TTTTCACCATTGGGGATACTCCAACTCCATCATTTCTGAA-GGGATACTT-CAACCCCTT-TTTA
1 TTTTCACCATCGGGGATACTCCAACCCCATCATTT-TCAAGGGGATA-TTCCAA--CCTTATTT-
* *
980641 CTTCTCAAATA-TCAAA
61 -TT-TAAAATATTAAAA
*
980657 TTTTCACCATCGGGGACACTCCAACCCCATCATTTTCAAGGGGATATTCCAACCTTATTTTTTAA
1 TTTTCACCATCGGGGATACTCCAACCCCATCATTTTCAAGGGGATATTCCAACCTTATTTTTTAA
980722 AATATTAAAA
66 AATATTAAAA
* *
980732 TTTTCACCGTCGTGGATACTCCAACCCCAT
1 TTTTCACCATCGGGGATACTCCAACCCCAT
980762 TTTTATTTCC
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
74 6 0.07
75 33 0.36
76 4 0.04
77 8 0.09
78 41 0.45
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.33
Consensus pattern (75 bp):
TTTTCACCATCGGGGATACTCCAACCCCATCATTTTCAAGGGGATATTCCAACCTTATTTTTTAA
AATATTAAAA
Found at i:982845 original size:20 final size:20
Alignment explanation
Indices: 982820--982984 Score: 90
Period size: 20 Copynumber: 8.7 Consensus size: 20
982810 GTTACAAGCT
982820 ATGTATCGATACATTTCTTC
1 ATGTATCGATACATTTCTTC
* *
982840 ATGTATCGATATAATGTATCGATAC
1 ATGTATCGATA-CAT-T-TC--TTC
* *
982865 ATTATATTGATACATTTCTTC
1 A-TGTATCGATACATTTCTTC
* *
982886 ATGTATTGAT--A-----TA
1 ATGTATCGATACATTTCTTC
982899 ATGTATCGATACATTTCTTC
1 ATGTATCGATACATTTCTTC
982919 ATGTATCGATACA-------
1 ATGTATCGATACATTTCTTC
982932 ATGTATCGATACATTTCTTC
1 ATGTATCGATACATTTCTTC
**
982952 ATGTATCGATACATTGT-AGC
1 ATGTATCGATACATT-TCTTC
982972 ATGTATCGATACA
1 ATGTATCGATACA
982985 AATAATGATA
Statistics
Matches: 112, Mismatches: 12, Indels: 42
0.67 0.07 0.25
Matches are distributed among these distances:
13 23 0.21
15 1 0.01
18 1 0.01
20 62 0.55
21 6 0.05
22 1 0.01
23 4 0.04
24 1 0.01
25 5 0.04
26 8 0.07
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTCTTC
Found at i:982890 original size:33 final size:33
Alignment explanation
Indices: 982853--982969 Score: 180
Period size: 33 Copynumber: 3.5 Consensus size: 33
982843 TATCGATATA
* * *
982853 ATGTATCGATACATTATATTGATACATTTCTTC
1 ATGTATCGATACAATGTATCGATACATTTCTTC
* *
982886 ATGTATTGATATAATGTATCGATACATTTCTTC
1 ATGTATCGATACAATGTATCGATACATTTCTTC
982919 ATGTATCGATACAATGTATCGATACATTTCTTC
1 ATGTATCGATACAATGTATCGATACATTTCTTC
*
982952 ATGTATCGATACATTGTA
1 ATGTATCGATACAATGTA
982970 GCATGTATCG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 76 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.43
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCGATACATTTCTTC
Found at i:982937 original size:13 final size:13
Alignment explanation
Indices: 982919--982944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
982909 ACATTTCTTC
982919 ATGTATCGATACA
1 ATGTATCGATACA
982932 ATGTATCGATACA
1 ATGTATCGATACA
982945 TTTCTTCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:983060 original size:19 final size:18
Alignment explanation
Indices: 983014--983070 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 18
983004 CTGCTAGTTT
*
983014 CATGTATCGATACAATTTGT
1 CATGTATCGATACAA--TGA
983034 CGATGTATCGATACAATGAA
1 C-ATGTATCGATACAATG-A
*
983054 CATGTATTGATACAATG
1 CATGTATCGATACAATG
983071 TATCGATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 17 0.52
20 2 0.06
21 14 0.42
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (18 bp):
CATGTATCGATACAATGA
Found at i:983077 original size:32 final size:33
Alignment explanation
Indices: 983036--983100 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
983026 CAATTTGTCG
* *
983036 ATGTATCGATACAATG-AACATGTATTGATACA
1 ATGTATCGATACAAAGCAACATGTATCGATACA
*
983068 ATGTATCGATACAAAGCAGCATGTATCGATACA
1 ATGTATCGATACAAAGCAACATGTATCGATACA
983101 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAAAGCAACATGTATCGATACA
Found at i:985547 original size:13 final size:13
Alignment explanation
Indices: 985529--985557 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
985519 AAATAGTGCC
985529 CAATGTATCGATA
1 CAATGTATCGATA
985542 CAATGTATCGATA
1 CAATGTATCGATA
985555 CAA
1 CAA
985558 GGAATGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:991753 original size:13 final size:13
Alignment explanation
Indices: 991735--991765 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
991725 ACATTTCTTC
991735 ATGTATCGATACA
1 ATGTATCGATACA
991748 ATGTATCGATACA
1 ATGTATCGATACA
*
991761 TTGTA
1 ATGTA
991766 GCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:991753 original size:33 final size:33
Alignment explanation
Indices: 991715--991781 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
991705 GTTACAAGCT
**
991715 ATGTATCGATACATT-TCTTCATGTATCGATACA
1 ATGTATCGATACATTGT-AGCATGTATCGATACA
991748 ATGTATCGATACATTGTAGCATGTATCGATACA
1 ATGTATCGATACATTGTAGCATGTATCGATACA
991781 A
1 A
991782 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTAGCATGTATCGATACA
Found at i:991850 original size:13 final size:13
Alignment explanation
Indices: 991832--991858 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
991822 CAATTTGTTG
991832 ATGTATCGATACA
1 ATGTATCGATACA
991845 ATGTATCGATACA
1 ATGTATCGATACA
991858 A
1 A
991859 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:992950 original size:16 final size:16
Alignment explanation
Indices: 992929--992959 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
992919 AAGAATTTCA
992929 ACAAAATCAAGCATCC
1 ACAAAATCAAGCATCC
992945 ACAAAATCAAGCATC
1 ACAAAATCAAGCATC
992960 ACACCTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.29, G:0.06, T:0.13
Consensus pattern (16 bp):
ACAAAATCAAGCATCC
Found at i:994249 original size:10 final size:10
Alignment explanation
Indices: 994203--994249 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
994193 GCATTTCATG
*
994203 ATTTTTTTTA
1 ATTTTTATTA
*
994213 ATTTCTATTA
1 ATTTTTATTA
994223 ATTTTTATTA
1 ATTTTTATTA
994233 TTATTTTT-TTA
1 --ATTTTTATTA
994244 ATTTTT
1 ATTTTT
994250 GATTTCTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 6 0.19
10 17 0.53
11 3 0.09
12 6 0.19
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:995765 original size:42 final size:42
Alignment explanation
Indices: 994762--995765 Score: 1012
Period size: 42 Copynumber: 23.9 Consensus size: 42
994752 CAGTCTTCAA
* * * * * * *
994762 GGTCAAAGCTGACACGCAGACTGAGGGTAGAAAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * * *
994804 GGTC-AAGATCGACAAGCAGGCTAAAGGTAGGAAAGTCTCTAG
1 GGTCAAAG-CCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * * *
994846 GGTCAAAGCCGACAAGCAGACTAAGGGTAGAAAAGTCTCCAC
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * * *
994888 GGTC-AAGCCGACGGGCAGACTGAGGGTAGAAAAGTCTCAAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * *
994929 GGTCAAAGCTGACAGGCAGACTAAGGGAAAGAAAGTCTTTAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * *
994971 GGTCAAAGCCGACAGGCAAACTAAGGGAAAGAAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
** * ** * *
995013 GGTCAAATACGATAGATAGACTAAGGGAAGGAAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * *
995055 GATCAAAGTCGACAGGTAGACTAAGGGAAGGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * * *
995097 GATCAAAGCCGAAAGGAAGGCTAAGGGAAGGAAAGTCT-TCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCT-AG
* * * * *
995139 GGTCAAAGCCGATAGGGAGATTAAAGGAAAGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * *
995181 GGTCAAAGCCGACAAGAAGACTAAAGGAAGGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * *
995223 GGTCAAAGCCGACAAGAAGACTAAAGGAAGGAAAGTCTCTAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* *
995265 GGTCAAAGCCAACAGGCAGACTAAGGGTAGGAAAGTCT-TCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCT-AG
* * * *
995307 GGTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCCCCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * *
995349 GGTCAAAGCCGATAGGCAGACTAAGGCAAGGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * *
995391 GGTCAAAGCCGACAGGTAGACTAAGGGAAGAAAAGTCTGC-AT
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCT-CTAG
* * *
995433 GGTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * *
995475 GGTCAAATCTGACATGCAGACTAAGGGAAGGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* *
995517 GGTCAAAGCCGACAGGCAGACTAAGGGTAGGAAAGTCTATAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
** * *
995559 GGTCAAAGCCGATGGGCAAACTGAGGGAAGGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * * * *
995601 GGTCAAAGTCGATAGGTAGACAAAGGGAAGGAAAGTCTCTAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * ** * * *
995643 GGTCAAAGTCGATAGATAAACTAAGGGAAGAAAAGTCTTTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
** * *
995685 GGTCAAAGCTAACAGGCAGACTAAGGAAAAGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
* * *
995727 GGTCAAAGTCGATAGGCAGACTATA-AGAAGGAAAGTCTC
1 GGTCAAAGCCGACAGGCAGACTA-AGGGAAGGAAAGTCTC
995766 CAGAAGTTTA
Statistics
Matches: 815, Mismatches: 137, Indels: 20
0.84 0.14 0.02
Matches are distributed among these distances:
41 42 0.05
42 767 0.94
43 6 0.01
ACGTcount: A:0.39, C:0.17, G:0.30, T:0.14
Consensus pattern (42 bp):
GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAG
Found at i:1008406 original size:16 final size:14
Alignment explanation
Indices: 1008378--1008430 Score: 70
Period size: 15 Copynumber: 3.6 Consensus size: 14
1008368 TGTTAGATGA
1008378 ATTTTTTTTTTATT
1 ATTTTTTTTTTATT
1008392 ATTTTATTTTGTTATT
1 ATTTT-TTTT-TTATT
*
1008408 ATTTTTTTATTATAT
1 ATTTTTTTTTTAT-T
1008423 ATTTTTTT
1 ATTTTTTT
1008431 AAAATTTTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
14 9 0.26
15 16 0.46
16 10 0.29
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (14 bp):
ATTTTTTTTTTATT
Found at i:1011236 original size:24 final size:25
Alignment explanation
Indices: 1011202--1011251 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
1011192 ATGCAAAATT
* *
1011202 TTACCTTAAAATG-TCCAGTGTCGA
1 TTACCTCAAAATGTTCCAGTATCGA
1011226 TTACCTCAAAATGTTCCAGTATCGA
1 TTACCTCAAAATGTTCCAGTATCGA
1011251 T
1 T
1011252 ACAATAAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (25 bp):
TTACCTCAAAATGTTCCAGTATCGA
Found at i:1012915 original size:126 final size:127
Alignment explanation
Indices: 1012690--1012930 Score: 448
Period size: 126 Copynumber: 1.9 Consensus size: 127
1012680 TGGACCAAAT
*
1012690 GTATTGATATATTATTCAATGTATCGATACATGCAGGCTATTCTCCATGATCGTGGCATTTTTAA
1 GTATTGATATATTATTCAATGTATCGATACATGCAGGCTATTCTCCATGATCATGGCATTTTTAA
*
1012755 CTTGTCCACCATTGATCCAAAGTTTGATTTTAACTTA-TTTTTTTTGCATAAAAAAATATCA
66 CTTGTCCACCATTGATCCAAAGTTTGATTTTAACTCATTTTTTTTTGCATAAAAAAATATCA
*
1012816 GTATTGATATATTATTCAATGTATCGATACATGCAGGCTATTCTTCATGATCATGGCATTTTTAA
1 GTATTGATATATTATTCAATGTATCGATACATGCAGGCTATTCTCCATGATCATGGCATTTTTAA
1012881 CTTGTCCACCATTGATCCAAAGTTTGATTTTAACTCATTTTTTTTTGCAT
66 CTTGTCCACCATTGATCCAAAGTTTGATTTTAACTCATTTTTTTTTGCAT
1012931 CAGAAAAGAT
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
126 99 0.89
127 12 0.11
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (127 bp):
GTATTGATATATTATTCAATGTATCGATACATGCAGGCTATTCTCCATGATCATGGCATTTTTAA
CTTGTCCACCATTGATCCAAAGTTTGATTTTAACTCATTTTTTTTTGCATAAAAAAATATCA
Found at i:1014291 original size:19 final size:19
Alignment explanation
Indices: 1014230--1014319 Score: 99
Period size: 20 Copynumber: 4.6 Consensus size: 19
1014220 CCCTTGAAAA
* *
1014230 TATCGATACATATCCAGATG
1 TATCGATACATATTCA-TTG
* *
1014250 TATCGATACATCATGCTTTG
1 TATCGATACAT-ATTCATTG
*
1014270 TATCGATACATGTTCATTG
1 TATCGATACATATTCATTG
*
1014289 TATCGATACATACTCAATTG
1 TATCGATACATATTC-ATTG
1014309 TATCGATACAT
1 TATCGATACAT
1014320 GAAAGTGGCA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
19 18 0.30
20 39 0.65
21 3 0.05
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (19 bp):
TATCGATACATATTCATTG
Found at i:1014297 original size:39 final size:40
Alignment explanation
Indices: 1014230--1014320 Score: 107
Period size: 39 Copynumber: 2.3 Consensus size: 40
1014220 CCCTTGAAAA
* *
1014230 TATCGATACATATCCAGATGTATCGATACAT-CATGC-TTTG
1 TATCGATACATGTCCAGATGTATCGATACATAC-T-CAATTG
* *
1014270 TATCGATACATGTTCA-TTGTATCGATACATACTCAATTG
1 TATCGATACATGTCCAGATGTATCGATACATACTCAATTG
1014309 TATCGATACATG
1 TATCGATACATG
1014321 AAAGTGGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 29 0.64
40 15 0.33
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (40 bp):
TATCGATACATGTCCAGATGTATCGATACATACTCAATTG
Found at i:1015976 original size:3 final size:3
Alignment explanation
Indices: 1015961--1015995 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
1015951 AACCGTCAAA
* *
1015961 GAT GAT GAA GAT GAT GAT GAT GAT GAT AAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1015996 GATTGACTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:1019128 original size:16 final size:16
Alignment explanation
Indices: 1019104--1019134 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1019094 AAAGGCTTTC
*
1019104 AAAATTTTTAATAGAA
1 AAAAGTTTTAATAGAA
1019120 AAAAGTTTTAATAGA
1 AAAAGTTTTAATAGA
1019135 GGAAATGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAGTTTTAATAGAA
Found at i:1023078 original size:19 final size:19
Alignment explanation
Indices: 1023051--1023104 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
1023041 GCATCATGCT
* **
1023051 TTGTTTCGATACATGTTTA
1 TTGTATCGATACATGTCAA
*
1023070 TTGTATCGATACATACTCAA
1 TTGTATCGATACAT-GTCAA
1023090 TTGTATCGATACATG
1 TTGTATCGATACATG
1023105 AAAGTGGCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.43
Consensus pattern (19 bp):
TTGTATCGATACATGTCAA
Found at i:1027773 original size:30 final size:31
Alignment explanation
Indices: 1027730--1027789 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
1027720 AATTATCTTG
1027730 ATCATGCATCCATAT-CACTAATCAT-TCATC
1 ATCATGCATCCATATCCACT-ATCATCTCATC
1027760 ATCATG-ATCCCATATCCACTATCATCTCAT
1 ATCATGCAT-CCATATCCACTATCATCTCAT
1027790 TATAAACTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 2 0.07
30 17 0.63
31 8 0.30
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.33
Consensus pattern (31 bp):
ATCATGCATCCATATCCACTATCATCTCATC
Found at i:1032314 original size:27 final size:28
Alignment explanation
Indices: 1032248--1032320 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
1032238 GTTGGTGACA
*
1032248 ACCTATTCAAAGCCCACAAGTCAGTGGC
1 ACCTCTTCAAAGCCCACAAGTCAGTGGC
* * *
1032276 ACC-CTTTTAAAGCCC-TAAGTTAGTGGC
1 ACCTC-TTCAAAGCCCACAAGTCAGTGGC
*
1032303 ACCTCTTCAAAGCTCACA
1 ACCTCTTCAAAGCCCACA
1032321 CTAGTTGGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
27 21 0.60
28 14 0.40
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (28 bp):
ACCTCTTCAAAGCCCACAAGTCAGTGGC
Found at i:1032445 original size:29 final size:28
Alignment explanation
Indices: 1032395--1032496 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 28
1032385 AGGGAGTTGA
*
1032395 ATCCTTTCAAAGCCCACAATTTAGTGGC
1 ATCCTTTCAAAGCCCATAATTTAGTGGC
**
1032423 ATCCTTTCAAAAGTTCATAATTTAGTGGC
1 ATCCTTTC-AAAGCCCATAATTTAGTGGC
* *
1032452 A-CTCTTTCCTAAGCCCATAAGTTAGTGGC
1 ATC-CTTT-CAAAGCCCATAATTTAGTGGC
*
1032481 ACCCTTTTC-AAGCCCA
1 ATCC-TTTCAAAGCCCA
1032497 CAAATTTATG
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
28 16 0.26
29 41 0.66
30 5 0.08
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (28 bp):
ATCCTTTCAAAGCCCATAATTTAGTGGC
Found at i:1032733 original size:36 final size:38
Alignment explanation
Indices: 1032690--1032780 Score: 132
Period size: 36 Copynumber: 2.4 Consensus size: 38
1032680 TCAGGCCTAG
*
1032690 GTCAAAGCCCACACAAGTTAGTGGCAA-CT-AGTTTGA
1 GTCAAAGCCCACACAAGTTAGTGGCAACCTAAGTCTGA
*
1032726 GTCAAAGCCCACACAAGTTGGTGGCAACCTAAGTCTGA
1 GTCAAAGCCCACACAAGTTAGTGGCAACCTAAGTCTGA
* *
1032764 GTCAAGGCCCTCACAAG
1 GTCAAAGCCCACACAAG
1032781 CTGGCAGCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 26 0.53
37 2 0.04
38 21 0.43
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (38 bp):
GTCAAAGCCCACACAAGTTAGTGGCAACCTAAGTCTGA
Found at i:1038088 original size:31 final size:31
Alignment explanation
Indices: 1038033--1038130 Score: 103
Period size: 31 Copynumber: 3.2 Consensus size: 31
1038023 GTGGTAACCA
* * *
1038033 AACCTTT-TCAAAGTTCACACGAGTTGGTGGC
1 AACCTTTGTC-AAGTCCACATGAGTTGGTGAC
1038064 -A-CTTTAGTCAAGGTCCACATGAGTTGGTGAC
1 AACCTTT-GTCAA-GTCCACATGAGTTGGTGAC
* *
1038095 AACCTTTTTGAAGTCCACATGAGTTGGTGAC
1 AACCTTTGTCAAGTCCACATGAGTTGGTGAC
1038126 AACCT
1 AACCT
1038131 GTTCAAAGCC
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
29 4 0.07
30 3 0.05
31 42 0.74
32 4 0.07
33 4 0.07
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (31 bp):
AACCTTTGTCAAGTCCACATGAGTTGGTGAC
Found at i:1038193 original size:27 final size:28
Alignment explanation
Indices: 1038127--1038194 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
1038117 GTTGGTGACA
*
1038127 ACCTGTTCAAAG-CCTACAAGTCAGTGGC
1 ACCTCTTCAAAGCCCTA-AAGTCAGTGGC
* *
1038155 ACC-CTTTTAAAGCCCT-AAGTTAGTGGC
1 ACCTC-TTCAAAGCCCTAAAGTCAGTGGC
1038182 ACCTCTTCAAAGC
1 ACCTCTTCAAAGC
1038195 TCACACTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
27 20 0.61
28 10 0.30
29 3 0.09
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (28 bp):
ACCTCTTCAAAGCCCTAAAGTCAGTGGC
Found at i:1038326 original size:29 final size:28
Alignment explanation
Indices: 1038274--1038380 Score: 101
Period size: 29 Copynumber: 3.8 Consensus size: 28
1038264 AGGGAGTTGA
*
1038274 ATCCTTTCAAAGCCCACAATTTAGTGGC
1 ATCCTTTCAAAGCCCACAAATTAGTGGC
*
1038302 ATCCTTTCAAAAGTCCACAAATTAGTGGC
1 ATCCTTTC-AAAGCCCACAAATTAGTGGC
* * *
1038331 A-CCGTTTCCTAAGCCCATAAGTTAGTGGC
1 ATCC-TTT-CAAAGCCCACAAATTAGTGGC
* *
1038360 ACCCTTTTC-AGGCCCACAAAT
1 ATCC-TTTCAAAGCCCACAAAT
1038381 CCATGGCACT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 19 0.29
29 40 0.62
30 6 0.09
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
ATCCTTTCAAAGCCCACAAATTAGTGGC
Found at i:1038583 original size:38 final size:37
Alignment explanation
Indices: 1038493--1038660 Score: 176
Period size: 37 Copynumber: 4.5 Consensus size: 37
1038483 GTAACAACTA
* * *
1038493 AGTCAAAGCCCATAGAAGTTGGTGGCAACCTAGTCTG
1 AGTCAAAGCCCACACAAGTTGGTGGCAACCCAGTCTG
* * * *
1038530 AGTCATA-CCCTACACAAGTTGGTGACAACCCAGGCCTA
1 AGTCAAAGCCC-ACACAAGTTGGTGGCAACCCA-GTCTG
* * * *
1038568 AGTCAAAGCCCACACAAGCTAGTGGCAACCTAGTTTG
1 AGTCAAAGCCCACACAAGTTGGTGGCAACCCAGTCTG
*
1038605 AGTCAAAGCCCACACTAGTTGGTGGCAACCCAAGTCTG
1 AGTCAAAGCCCACACAAGTTGGTGGCAACCC-AGTCTG
* *
1038643 AGTCAAAGTCCTCACAAG
1 AGTCAAAGCCCACACAAG
1038661 CTAGCAGCAC
Statistics
Matches: 104, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
36 3 0.03
37 52 0.50
38 46 0.44
39 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (37 bp):
AGTCAAAGCCCACACAAGTTGGTGGCAACCCAGTCTG
Found at i:1038625 original size:75 final size:75
Alignment explanation
Indices: 1038490--1038664 Score: 217
Period size: 75 Copynumber: 2.3 Consensus size: 75
1038480 CTAGTAACAA
* * * * *
1038490 CTAAGTCAAAGCCCATAGAAGTTGGTGGCAACCTAGTCTGAGTCATACCCTACACAAGTTGGTGA
1 CTAAGTCAAAGCCCACACAAGCTAGTGGCAACCTAGTCTGAGTCAAACCCTACACAAGTTGGTGA
*
1038555 CAACCCAGGC
66 CAACCCAAGC
* *
1038565 CTAAGTCAAAGCCCACACAAGCTAGTGGCAACCTAGTTTGAGTCAAAGCCC-ACACTAGTTGGTG
1 CTAAGTCAAAGCCCACACAAGCTAGTGGCAACCTAGTCTGAGTCAAA-CCCTACACAAGTTGGTG
* *
1038629 GCAACCCAAGT
65 ACAACCCAAGC
* * *
1038640 CTGAGTCAAAGTCCTCACAAGCTAG
1 CTAAGTCAAAGCCCACACAAGCTAG
1038665 CAGCACTCAC
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
75 83 0.97
76 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (75 bp):
CTAAGTCAAAGCCCACACAAGCTAGTGGCAACCTAGTCTGAGTCAAACCCTACACAAGTTGGTGA
CAACCCAAGC
Found at i:1041556 original size:26 final size:27
Alignment explanation
Indices: 1041527--1041578 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
1041517 ATTTTTGATT
*
1041527 GAAA-AACGGGGTTGGAGTATCCCCTC
1 GAAAGAACGGGGTTAGAGTATCCCCTC
* *
1041553 GAAAGAATGGGGTTAGAGTGTCCCCT
1 GAAAGAACGGGGTTAGAGTATCCCCT
1041579 ATGATGACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (27 bp):
GAAAGAACGGGGTTAGAGTATCCCCTC
Found at i:1043897 original size:51 final size:51
Alignment explanation
Indices: 1043842--1044039 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 51
1043832 AGATGTATGG
1043842 ATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCA
1 ATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCA
* * ** * * * *
1043893 ATACATTGAAGAATGCATCGATACATTCATACATGTATTAAACACTAAAAAATGTATCG
1 ATACATTGAAAAATGTATCGATACA-TC-T--GGGTA--AAA-A-GACAGAATGTATCA
* * * *
1043952 ATACACTAAAAAATGTATCGATATATC-GAGGTAAAAAGACAGAATGTATTA
1 ATACATTGAAAAATGTATCGATACATCTG-GGTAAAAAGACAGAATGTATCA
*
1044003 ATACATTGAAAAATGTATCGATACATATGGGTAAAAA
1 ATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
1044040 TGTGACTTTT
Statistics
Matches: 113, Mismatches: 24, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
51 63 0.56
52 4 0.04
53 4 0.04
55 6 0.05
57 3 0.03
58 3 0.03
59 30 0.27
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (51 bp):
ATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCA
Done.