Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 7 of 16
Found at i:1043907 original size:20 final size:20
Alignment explanation
Indices: 1043882--1043919 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1043872 GTAAAAAGAC
*
1043882 AGAATGTATCAATACATTGA
1 AGAATGCATCAATACATTGA
*
1043902 AGAATGCATCGATACATT
1 AGAATGCATCAATACATT
1043920 CATACATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (20 bp):
AGAATGCATCAATACATTGA
Found at i:1043959 original size:20 final size:20
Alignment explanation
Indices: 1043934--1043974 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1043924 CATGTATTAA
1043934 ACACTAAAAAATGTATCGAT
1 ACACTAAAAAATGTATCGAT
1043954 ACACTAAAAAATGTATCGAT
1 ACACTAAAAAATGTATCGAT
1043974 A
1 A
1043975 TATCGAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (20 bp):
ACACTAAAAAATGTATCGAT
Found at i:1050377 original size:31 final size:31
Alignment explanation
Indices: 1050333--1050443 Score: 123
Period size: 31 Copynumber: 3.4 Consensus size: 31
1050323 CTTTCAAGGC
1050333 TAAGATAGAAACCTCCCTATCTTTTCACGGGT
1 TAAGATAG-AACCTCCCTATCTTTTCACGGGT
* *** *
1050365 TAAGATAGAACCTCTCTCCCTATATTTTTCAAAAGC
1 TAAGATAGAA---C-CTCCCTAT-CTTTTCACGGGT
1050401 TAAGATAGAACCTCCCTATCTTTTCACGGGT
1 TAAGATAGAACCTCCCTATCTTTTCACGGGT
1050432 TAAGATAGAACC
1 TAAGATAGAACC
1050444 CCTCAATCAC
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
31 21 0.33
32 16 0.25
33 1 0.02
34 1 0.02
35 8 0.12
36 17 0.27
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (31 bp):
TAAGATAGAACCTCCCTATCTTTTCACGGGT
Found at i:1054108 original size:21 final size:21
Alignment explanation
Indices: 1054053--1054110 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
1054043 TTTATTACTT
1054053 AACTCA-TCATTTTCATTTCAC
1 AACTCATTCATTTTC-TTTCAC
* **
1054074 AACTCCTTTC-TTTTCTTTTTC
1 AACT-CATTCATTTTCTTTCAC
1054095 AACTCATTCATTTTCT
1 AACTCATTCATTTTCT
1054111 CCTCTAGCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 4 0.13
21 18 0.60
22 6 0.20
23 2 0.07
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.52
Consensus pattern (21 bp):
AACTCATTCATTTTCTTTCAC
Found at i:1055735 original size:32 final size:32
Alignment explanation
Indices: 1055695--1055805 Score: 127
Period size: 32 Copynumber: 3.4 Consensus size: 32
1055685 ATCTTTCAAG
*
1055695 GCTAAGATAGAATCCTCCTTATCTTTTTACGA
1 GCTAAGATAGAATCCTCCCTATCTTTTTACGA
* *
1055727 GTTAAGATAGAACCTCTCTCCCTATCTTTTT-CAAA
1 GCTAAGATAGAA--TC-CTCCCTATCTTTTTAC-GA
*
1055762 GGCTAAGATAGAA-CCTCCCTATCTTTTCACGA
1 -GCTAAGATAGAATCCTCCCTATCTTTTTACGA
1055794 GCTAAGATAGAA
1 GCTAAGATAGAA
1055806 CCTTTCAATC
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
31 12 0.18
32 25 0.37
33 2 0.03
34 3 0.04
35 14 0.21
36 11 0.16
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (32 bp):
GCTAAGATAGAATCCTCCCTATCTTTTTACGA
Found at i:1055808 original size:31 final size:32
Alignment explanation
Indices: 1055683--1055807 Score: 123
Period size: 31 Copynumber: 3.9 Consensus size: 32
1055673 CTTTACAATA
* *
1055683 CTATC-TTTCAAG-GCTAAGATAGAATCCTCC
1 CTATCTTTTCACGAGCTAAGATAGAACCCTCC
* * *
1055713 TTATCTTTTTACGAGTTAAGATAGAACCTCTCTCC
1 CTATCTTTTCACGAGCTAAGATAGAA-C-C-CTCC
*
1055748 CTATCTTTTTCA-AAGGCTAAGATAGAA-CCTCC
1 CTATC-TTTTCACGA-GCTAAGATAGAACCCTCC
1055780 CTATCTTTTCACGAGCTAAGATAGAACC
1 CTATCTTTTCACGAGCTAAGATAGAACC
1055808 TTTCAATCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
30 4 0.05
31 23 0.30
32 22 0.29
33 1 0.01
34 1 0.01
35 9 0.12
36 16 0.21
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.33
Consensus pattern (32 bp):
CTATCTTTTCACGAGCTAAGATAGAACCCTCC
Found at i:1063122 original size:159 final size:159
Alignment explanation
Indices: 1062625--1065265 Score: 813
Period size: 159 Copynumber: 16.8 Consensus size: 159
1062615 GGAGACACCG
* * * * * * * *
1062625 ACATGATATTGATGCATTAGTTTCACAAGAAAAGTTTTTTTTCCCATCTTTTTCCTTAGAAACAA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
* * * * * * * *
1062690 AGTTCATCCCTTAAATGAGATAAATATGGATTCTCGTAATAATCTTCATTGTTTTTGTGATTGGG
66 AGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGGG
*** * * * *
1062755 TTGTAAAACCACATTCTTTTCA-TGGGAG
131 CAATAAAACCACATTCCTCTCATTAGGAT
** * * * * * *
1062783 ACACAATATTGAAGCTTT-ATTTTGCAA-AAAAGCTTTTCTT-ATAATCTTTTTCCATA-AGATC
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCT-ATCATTTTCCTTAGA-ATC
* * * ** * * ** ** * *
1062844 AAAGTTTGTCACTCAAAAT-A-ATC-AACAAGGATTCTTTTCATAAT-TATAATTGCTTTTATGG
64 AAAGTTCGTCCCTC-AAATGAGA-CAAACATGGATTCTCATAAAAATCT-CCATTATTTTTGTGA
* * * * * *
1062905 TTGGGCAACT-GAAGCATGA-TCTTCTTATT-GGAAA
126 TTGGGCAA-TAAAACCA-CATTCCTCTCATTAGG-AT
* * *
1062939 ACATGATATTGATGTTTTGGTTTTGTAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
* * * * * * *
1063004 AATTCGTCCCTCAAATAAGATAAACATGGATTCTCATAAAAATCTTCACTATTTTTATGATTAGG
66 AGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGGG
*
1063069 TAATAAAACCACATTCCTCTCATTAGGAT
131 CAATAAAACCACATTCCTCTCATTAGGAT
** * * *
1063098 ACATGATATTGATGCTTTATTTTTGCAAGACAAGCTTTTCTT-CTGATCATTTTCCATA-AGATC
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCT-ATCATTTTCCTTAGA-ATC
* * ** * * * * *
1063161 AAAGCATAG-AGCTCAAATGAGACCAACATGGATTCTCATAAAATTCACCATTGTTTTTATGATT
64 AAAG-TTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATT
** *
1063225 GGGCGACCAAAA-CACATT-CTCCTTATTAGGAT
128 GGGC-AATAAAACCACATTCCT-CTCATTAGGAT
** ** * *
1063257 ACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTAGTTCC-ATCAATTTTTTCTCAGAATC
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATC-A-TTTTCCTTAGAATC
* * * * * * * * *
1063321 CAAGTTTGTCCCTCAAATAAGACAAACCTAGATTCTTCA-AATAATCTACATTATTTTCGTGAAT
64 AAAGTTCGTCCCTCAAATGAGACAAACATGGATTC-TCATAAAAATCTCCATTATTTTTGTGATT
* * * *
1063385 AGGAAATAAAACCATATTCTTCAT-ATTAGGAT
128 GGGCAATAAAACCACATTCCTC-TCATTAGGAT
*** * * ** *
1063417 ATGCGATATTGATGCTTTGTTTTTGCAAGAAAAGCTTTTCTTCAGATCATTGTCCATTAG-ATCA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCC-TTAGAATCA
* * * * * * * *
1063481 AAGTTCATCTCTCAAATGAGACTAACTTAGATTCTCACAAAAATCACCATTGTTTTTGTGATTGG
65 AAGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGG
** * ** *
1063546 GCAACCAAAGCATGTT-CTCCTCATTAGAAT
130 GCAATAAAACCACATTCCT-CTCATTAGGAT
* * * * * * *
1063576 ATATGATATTGATGCTTTGGCTTCACAAGAAACGTTTTTCCTCCCATCATTTTCCTTAGAATCAA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
* * * * *
1063641 AGTTTGTTCTTCAAATGAGACAAACATGGATTCTCATAATAATCTTCATTATTTTTGTGATTGGG
66 AGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGGG
* * * *
1063706 CAATAAAATCACATTCTTCACATTAGTAT
131 CAATAAAACCACATTCCTCTCATTAGGAT
** * * * ** * * **
1063735 ACACAATATTGACGCTTTGGCTTCGAAAGAATGGCTTTACTTTCTATCATTTTATTTAGAATCAA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
* * ** * ** *
1063800 AGTTCATCTCTCAAATGAGACAAACATGG------AT---AA-CTTTATTGTTTTCATTATT-GG
66 AGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGGG
* *
1063854 TAATAAAACCATA-T--T-T--TT---AT
131 CAATAAAACCACATTCCTCTCATTAGGAT
** * * * * * * *
1063874 ACATGATATTGAT--TTTTTTTTTGTAAAAAAAGCTTTTCTACTTATCAGTTTCCATA-AGATCA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGA-ATCA
* * * * * * * * * *
1063936 AAGTTTGTCCTTCAAATGAGATC-ACCATTGATTCTCATAATAAGCACCATTGTTTTTTTTTTAT
65 AAGTTCGTCCCTCAAATGAGA-CAAACATGGATTCTCATAAAAATCTCCA-T-TATTTTTGTGAT
* * * * *
1064000 TGAGTAACCAAAA-CACATT-TTCTTTATTAGGAT
127 TGGGCAA-TAAAACCACATTCCTC-TCATTAGGAT
* * *
1064033 ACATGATAGTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTT--TATCATTTTCCATA-AGATCA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGA-ATCA
* * * * * * ** * ** *
1064095 TAGTTTGTCCATCAAAAGAGACCAATATGGATTCTTGTAATAATCTTTATTA-TTTTATGATTGG
65 AAGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGG
** **
1064159 GCAATACAAA--ATGGTTTTTCTCATT-GGTAT
130 GCAATA-AAACCA-CATTCCTCTCATTAGG-AT
** ** * *
1064189 ACATGATAAAGATGCTTTGGTTTCATAAGAAAAGCTTTTCTTCC-ATTATTTTCCTAAGAATCAA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
* * * * * * * * * * * *
1064253 AGTTTGTCCTTCCAAT-AGGACAAACA--AATACTCCTGTAATATCCTTCATTTTTTTTGTTACT
66 AGTTCGTCCCTCAAATGA-GACAAACATGGATTCTCAT-AAAAAT-CTCCATTATTTTTGTGATT
* ** * *
1064315 AGGCAACCAAAGCACATT-CTCCTCATTGGGAT
128 GGGCAATAAAACCACATTCCT-CTCATTAGGAT
* * * * * * * * *
1064347 ACATGATATTAATACTTTGGTTTTGCAAGAAAATCATTTCTT-TTGATTATTTTTCATA-AGATC
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCT-ATCATTTTCCTTAGA-ATC
* * * * * *** *
1064410 AAAGTTTGTCACTCAAAAT-AGACAAA-ATAGATTCTCGTAATAATCTTTTTTGTTTTTGTGATT
64 AAAGTTCGTCCCTC-AAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATT
* * ** *
1064473 AGGCAATAAAAACACATTTTTCTCGTTAGGAT
128 GGGCAATAAAACCACATTCCTCTCATTAGGAT
* * * * ** * * * * ** *
1064505 ACATGCTATAGATGCTTTGCTTTCACAA-AAAAAATGTTCCATCCAACCCCTTTCCATA-AGATC
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCT-TTTCTTCCTATCATTTTCCTTAGA-ATC
* * * * *
1064568 ATAA-TTTGTCCCTCAAATGAGACCAACAT-GAGTTCTTGC-T-ACAACCACCATTA-TTTTGTG
64 A-AAGTTCGTCCCTCAAATGAGACAAACATGGA-TTC-T-CATAAAAATCTCCATTATTTTTGTG
* * * * * * *
1064628 ATTAGGCAA-ACAAAGCACACTCTTCTAATTAAGTT
125 ATTGGGCAATA-AAACCACATTCCTCTCATTAGGAT
** * * * * *
1064663 ACATGATATTGATGCTTTCATTTAGCAAAAAAAAAAGCTTTTCCT-CTCATCATTTGTCATAAG-
1 ACATGATATTGATGCTTTGGTTTCGC---AAGAAAAGCTTTTCTTCCT-ATCATTT-TCCTTAGA
* * * * * * ** * *
1064726 ATTAAAGTTCATCCCTTAAATGAGACCAACATGGATTCAT-GTACAAATCAACATTGTTTTTCTG
61 ATCAAAGTTCGTCCCTCAAATGAGACAAACATGGATTC-TCATAAAAATCTCCATTATTTTTGTG
** * * *
1064790 ATTGGGCAACCAAA--ACATGTTCTCCTCATTGTGGTT
125 ATTGGGCAATAAAACCACAT-TCCT-CTCATT-AGGAT
* * ** * * *** *
1064826 CACA--ATATTGATGCTTTGGTTTTGCATGAAAATATTTTCTTCCCATTATTTTGAATAGGAT--
1 -ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCA
* * * * * * * * * *
1064887 -AGTTCGTGCTTTAAATGAGACCATCATGGATTCTCTTCATAATCT---TT-TTTTTTTAGATTA
65 AAGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGT-GATTG
* * * ** * *
1064947 AGTAATTAAA-CATGTT-CTCCTCATTGGGAG
129 GGCAATAAAACCACATTCCT-CTCATTAGGAT
* * * * * * * *
1064977 ACATGGTAATGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCTTGTCATTTTTCATA-AGATCA
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGA-ATCA
* * * * ** ** * *
1065041 AA-TTCATCCCTCAAATAAAACCAACAAAGATTCTTGTAAAAAT-TGTCATTTTTTTTTTTTTGT
65 AAGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCT-CCA-----TTATTTTTGT
** * *
1065104 GATTGGGCAACCAAAGCACATT-CTCCTTATTAGGAT
124 GATTGGGCAATAAAACCACATTCCT-CTCATTAGGAT
* * * * ** ** *
1065140 ACATGATATTAATGCTTTGGCTTCACAAGAAAAGCTTTTTTTTTTGCATTTTTTTCTTTAGAATC
1 ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCT--ATCATTTTCCTTAGAATC
* ** * * ** * * *
1065205 AAAGTTCATCTTTTAAATGAGATAAACATGGATTCTTGTAATAATTTTCATTATTTTTGTG
64 AAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTG
1065266 TTTAGACAAC
Statistics
Matches: 1826, Mismatches: 513, Indels: 285
0.70 0.20 0.11
Matches are distributed among these distances:
136 1 0.00
137 53 0.03
138 1 0.00
139 12 0.01
142 2 0.00
143 2 0.00
145 1 0.00
146 2 0.00
147 3 0.00
148 13 0.01
149 24 0.01
150 12 0.01
151 7 0.00
152 59 0.03
153 16 0.01
154 32 0.02
155 57 0.03
156 154 0.08
157 77 0.04
158 283 0.15
159 613 0.34
160 135 0.07
161 91 0.05
162 62 0.03
163 62 0.03
164 3 0.00
165 13 0.01
166 35 0.02
167 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.39
Consensus pattern (159 bp):
ACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
AGTTCGTCCCTCAAATGAGACAAACATGGATTCTCATAAAAATCTCCATTATTTTTGTGATTGGG
CAATAAAACCACATTCCTCTCATTAGGAT
Found at i:1063442 original size:319 final size:316
Alignment explanation
Indices: 1062625--1063752 Score: 1024
Period size: 319 Copynumber: 3.6 Consensus size: 316
1062615 GGAGACACCG
* * * * ** * *
1062625 ACATGATATTGATGCATTAGTTTCACAAGAAAAGTTTTTTTTCCCATCTTTTTCCTTAGAAACAA
1 ACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTACTT-CCATCATTTTCCTTAGAATCAA
** * * * * * * *
1062690 AGTTCATCCCTTAAATGAGATAAATATGGATTCTCGTAATAATCTTCATTGTTTTTGTGATTGGG
65 AGTTTGTCCCTCAAATAAGACAAACATGGATTCTCATAATAATCTTCATTATTTTTGTGATTAGG
*** * * * * *
1062755 TTGTAAAACCACATTCTT-TTCA-TGGGAGACACAATATTGAAGCTTTA-TTTTGCAA-AAAAGC
130 AAATAAAACCACATTCTTCAT-ATTAGGATACACGATATTGATGCTTTATTTTTGCAAGAAAAGC
* * * ** *
1062816 TTTTCTT-ATAATCTTTTTCCATAAGATCAAAGTTTGTCA-CTCAAAAT-A-ATCAACA-AGGAT
194 TTTTCTTCA-GATCATTGTCCATAAGATCAAAG-TCAT-AGCTC-AAATGAGACCAACATA-GAT
** * * ** * * ** * * * * * *
1062876 TCTTTTC-ATAATTATAATTGCTTTTATGGTTGGGCAACTGAAGCATGA-TCTTCTTATTGGAAA
254 TC-TCACAAAAATCACCATTGTTTTTATGATTGGGCAACCAAAACA-CATTCTCCTCATTAGAAT
* ** *
1062939 ACATGATATTGATGTTTTGGTTTTGTAAGAAAAGCTTTTCTTCCTATCATTTTCCTTAGAATCAA
1 ACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTACTTCC-ATCATTTTCCTTAGAATCAA
* * * * * *
1063004 AATTCGTCCCTCAAATAAGATAAACATGGATTCTCATAAAAATCTTCACTATTTTTATGATTAGG
65 AGTTTGTCCCTCAAATAAGACAAACATGGATTCTCATAATAATCTTCATTATTTTTGTGATTAGG
* * * *
1063069 TAATAAAACCACATTCCTC-TCATTAGGATACATGATATTGATGCTTTATTTTTGCAAGACAAGC
130 AAATAAAACCACATTCTTCAT-ATTAGGATACACGATATTGATGCTTTATTTTTGCAAGAAAAGC
* * *
1063133 TTTTCTTCTGATCATTTTCCATAAGATCAAAG-CATAGAGCTCAAATGAGACCAACATGGATTCT
194 TTTTCTTCAGATCATTGTCCATAAGATCAAAGTCAT--AGCTCAAATGAGACCAACATAGATTCT
* * * * *
1063197 CATAAAATTCACCATTGTTTTTATGATTGGGCGACCAAAACACATTCTCCTTATTAGGAT
257 CACAAAAATCACCATTGTTTTTATGATTGGGCAACCAAAACACATTCTCCTCATTAGAAT
* * * *
1063257 ACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTAGTTCCATCAATTTTTTCTCAGAATCC
1 ACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTACTTCCATC-A-TTTTCCTTAGAATCA
* * * * *
1063322 AAGTTTGTCCCTCAAATAAGACAAACCTAGATTCTTCA-AATAATCTACATTATTTTCGTGAATA
64 AAGTTTGTCCCTCAAATAAGACAAACATGGATTC-TCATAATAATCTTCATTATTTTTGTGATTA
* ** *
1063386 GGAAATAAAACCATATTCTTCATATTAGGATATGCGATATTGATGCTTTGTTTTTGCAAGAAAAG
128 GGAAATAAAACCACATTCTTCATATTAGGATACACGATATTGATGCTTTATTTTTGCAAGAAAAG
* ** * *
1063451 CTTTTCTTCAGATCATTGTCCATTAGATCAAAGTTCATCTCTCAAATGAGACTAACTTAGATTCT
193 CTTTTCTTCAGATCATTGTCCATAAGATCAAAG-TCATAGCTCAAATGAGACCAACATAGATTCT
* * **
1063516 CACAAAAATCACCATTGTTTTTGTGATTGGGCAACCAAAGCATGTTCTCCTCATTAGAAT
257 CACAAAAATCACCATTGTTTTTATGATTGGGCAACCAAAACACATTCTCCTCATTAGAAT
* * * * * * *
1063576 ATATGATATTGATGCTTTGGCTTCACAAGAAACGTTTTTCCTCCCATCATTTTCCTTAGAATCAA
1 ACATGATATTGATGCTTTGGTTTCATAAGAAAAG-CTTTACTTCCATCATTTTCCTTAGAATCAA
* * * *
1063641 AGTTTGTTCTTCAAATGAGACAAACATGGATTCTCATAATAATCTTCATTATTTTTGTGATTGGG
65 AGTTTGTCCCTCAAATAAGACAAACATGGATTCTCATAATAATCTTCATTATTTTTGTGATTAGG
* * * * * *
1063706 CAATAAAATCACATTCTTCACATTAGTATACACAATATTGACGCTTT
130 AAATAAAACCACATTCTTCATATTAGGATACACGATATTGATGCTTT
1063753 GGCTTCGAAA
Statistics
Matches: 663, Mismatches: 130, Indels: 38
0.80 0.16 0.05
Matches are distributed among these distances:
313 2 0.00
314 124 0.19
315 21 0.03
316 13 0.02
317 45 0.07
318 192 0.29
319 250 0.38
320 13 0.02
321 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (316 bp):
ACATGATATTGATGCTTTGGTTTCATAAGAAAAGCTTTACTTCCATCATTTTCCTTAGAATCAAA
GTTTGTCCCTCAAATAAGACAAACATGGATTCTCATAATAATCTTCATTATTTTTGTGATTAGGA
AATAAAACCACATTCTTCATATTAGGATACACGATATTGATGCTTTATTTTTGCAAGAAAAGCTT
TTCTTCAGATCATTGTCCATAAGATCAAAGTCATAGCTCAAATGAGACCAACATAGATTCTCACA
AAAATCACCATTGTTTTTATGATTGGGCAACCAAAACACATTCTCCTCATTAGAAT
Found at i:1064466 original size:158 final size:152
Alignment explanation
Indices: 1063892--1064523 Score: 404
Period size: 158 Copynumber: 4.0 Consensus size: 152
1063882 TTGATTTTTT
* * * * * *
1063892 TTTTGTAAAAAAAGCTTTTCTACTTATCAGTTTCCATAAGATCAAAGTTTGTCCTTC-AAATGAG
1 TTTTGCAAGAAAAGCTTTTCT--TTATTATTTTTCATAAGATCAAAGTTTGTCCATCAAAAT-AG
** * * * *
1063956 ATCACCATTGATTCTCATAATAAGCACCATTGTTTTTTTTT-TATT-GAGTAACCAAAACACATT
63 A-CAAAATAGATTCTCGTAAT-A--ATC-TT-TTTTTTTTTGTATTAG-GCAACC-AAACACATT
* * * *
1064019 TTCTTTATTAGGATACATGATAGTGATGCTTTGG
120 TTCCTCATTGGGATACATGATA-TAATGCTTTGG
* * * *
1064053 TTTTGCAAGAAAAGCTTTTCTTTATCATTTTCCATAAGATCATAGTTTGTCCATCAAAAGAGACC
1 TTTTGCAAGAAAAGCTTTTCTTTATTATTTTTCATAAGATCAAAGTTTGTCCATCAAAATAGA-C
* * * * * * ** *
1064118 AATATGGATTCTTGTAATAATCTTTATTATTTTATG-ATTGGGCAATACAAA-ATGGTTTTTCTC
65 AAAATAGATTCTCGTAATAATCTTT-TT-TTTTTTGTATTAGGCAA-CCAAACA-CATTTTCCTC
* *
1064181 ATTGGTATACATGATAAAGATGCTTTGG
126 ATTGGGATACATGATATA-ATGCTTTGG
*** * * * *
1064209 TTTCATAAGAAAAGCTTTTCTTCCATTA-TTTTCCTAAGAATCAAAGTTTGTCCTTC-CAATAGG
1 TTTTGCAAGAAAAGCTTTTCTT-TATTATTTTTCATAAG-ATCAAAGTTTGTCCATCAAAATA-G
* * * *
1064272 ACAAACA-A-ATACTCCTGTAAT-ATCCTTCATTTTTTTTGTTACTAGGCAACCAAAGCACATTC
63 ACAAA-ATAGATTCT-C-GTAATAAT-CTT-TTTTTTTTTG-TATTAGGCAACCAAA-CACATTT
*
1064334 TCCTCATTGGGATACATGATATTAATACTTTGG
121 TCCTCATTGGGATACATGATA-TAATGCTTTGG
* *
1064367 TTTTGCAAGAAAATCATTTCTTTTGATTATTTTTCATAAGATCAAAGTTTGT-CACTCAAAATAG
1 TTTTGCAAGAAAAGCTTTTC-TTT-ATTATTTTTCATAAGATCAAAGTTTGTCCA-TCAAAATAG
** *
1064431 ACAAAATAGATTCTCGTAATAATCTTTTTTGTTTTTGTGATTAGGCAATAAAAACACATTTTTCT
63 ACAAAATAGATTCTCGTAATAATCTTTTTT-TTTTTGT-ATTAGGCAA-CCAAACACATTTTCCT
* * *
1064496 CGTTAGGATACATGCTATAGATGCTTTG
125 CATTGGGATACATGATATA-ATGCTTTG
1064524 CTTTCACAAA
Statistics
Matches: 366, Mismatches: 72, Indels: 69
0.72 0.14 0.14
Matches are distributed among these distances:
154 1 0.00
155 9 0.02
156 85 0.23
157 43 0.12
158 106 0.29
159 83 0.23
160 20 0.05
161 19 0.05
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (152 bp):
TTTTGCAAGAAAAGCTTTTCTTTATTATTTTTCATAAGATCAAAGTTTGTCCATCAAAATAGACA
AAATAGATTCTCGTAATAATCTTTTTTTTTTTGTATTAGGCAACCAAACACATTTTCCTCATTGG
GATACATGATATAATGCTTTGG
Found at i:1066342 original size:11 final size:11
Alignment explanation
Indices: 1066318--1066355 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1066308 AAATTTTACT
1066318 TTATGTAAAT-A
1 TTAT-TAAATAA
1066329 TTATTAAATAA
1 TTATTAAATAA
*
1066340 TTATCAAATAA
1 TTATTAAATAA
1066351 TTATT
1 TTATT
1066356 TAATTTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (11 bp):
TTATTAAATAA
Found at i:1067797 original size:62 final size:62
Alignment explanation
Indices: 1067711--1067846 Score: 256
Period size: 62 Copynumber: 2.2 Consensus size: 62
1067701 GCCCTTTAGA
*
1067711 GTTACCGGGTA-CCTTGGTGTCAATGGTAAGCTTCAAGGATAATTTGATCGAGTCCTAAGCT
1 GTTATCGGGTACCCTTGGTGTCAATGGTAAGCTTCAAGGATAATTTGATCGAGTCCTAAGCT
1067772 GTTATCGGGTACCCTTGGTGTCAATGGTAAGCTTCAAGGATAATTTGATCGAGTCCTAAGCT
1 GTTATCGGGTACCCTTGGTGTCAATGGTAAGCTTCAAGGATAATTTGATCGAGTCCTAAGCT
1067834 GTTATCGGGTACC
1 GTTATCGGGTACC
1067847 TTAGCATTAA
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 10 0.14
62 63 0.86
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (62 bp):
GTTATCGGGTACCCTTGGTGTCAATGGTAAGCTTCAAGGATAATTTGATCGAGTCCTAAGCT
Found at i:1068431 original size:17 final size:17
Alignment explanation
Indices: 1068409--1068445 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
1068399 TCACATGGAA
1068409 TAATAAAATTGGGTTAT
1 TAATAAAATTGGGTTAT
*
1068426 TAATAAAATTGGTTTAT
1 TAATAAAATTGGGTTAT
1068443 TAA
1 TAA
1068446 AATTGTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (17 bp):
TAATAAAATTGGGTTAT
Found at i:1077075 original size:56 final size:56
Alignment explanation
Indices: 1077009--1077129 Score: 190
Period size: 56 Copynumber: 2.1 Consensus size: 56
1076999 GATTATTTTA
1077009 TTAAGATAATGTCTAAATTAGGACATACTAGATTAAGGC-GAATAAACCTTGTCCTAG
1 TTAA-ATAATGTCTAAATTAGGACATACTAGATTAAGGCAG-ATAAACCTTGTCCTAG
* *
1077066 TTAAATAATGTCTAAATTAGGACGTACTATATTAAGGCAGATAAACCTTGTCCTAG
1 TTAAATAATGTCTAAATTAGGACATACTAGATTAAGGCAGATAAACCTTGTCCTAG
1077122 TTGAAATA
1 TT-AAATA
1077130 GGATTTCACT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
56 50 0.83
57 10 0.17
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (56 bp):
TTAAATAATGTCTAAATTAGGACATACTAGATTAAGGCAGATAAACCTTGTCCTAG
Found at i:1079370 original size:22 final size:23
Alignment explanation
Indices: 1079343--1079398 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
1079333 GACCAACATC
*
1079343 AATAATCACCATTATTTTTTG-T
1 AATAATCACCATTATTTTCTGTT
* *
1079365 AGTAATCACCATTGTTTTCTGTT
1 AATAATCACCATTATTTTCTGTT
1079388 AATAATCACCA
1 AATAATCACCA
1079399 ACACGGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (23 bp):
AATAATCACCATTATTTTCTGTT
Found at i:1083745 original size:28 final size:28
Alignment explanation
Indices: 1083658--1084216 Score: 529
Period size: 28 Copynumber: 19.3 Consensus size: 28
1083648 GGTTTTAAAA
* *
1083658 AAAGG-TGCCACTAACTTGTGTGGGGTTTG
1 AAAGGATGCCACTGAC-T-TGTGGGCTTTG
* *
1083687 AAAAGAGTTGCCACCGACTGGTGTGGGCTTTG
1 -AAAG-GATGCCACTGACT--TGTGGGCTTTG
1083719 AAAGGATGCCA-TCGACTTGTGGGCTTTG
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* *
1083747 AAAAGG-TGCCACCGACTTGTGGACTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
*
1083775 AAATGGTATGCCACTGACTTGTGGGCTTTA
1 AAA-GG-ATGCCACTGACTTGTGGGCTTTG
* * * *
1083805 AAAGGGTACCACTAACTTATGGGCTTTAG
1 AAAGGATGCCACTGACTTGTGGGCTTT-G
* *
1083834 AAAGG-TGCCACCGATTTGTGTGGGCTTTG
1 AAAGGATGCCACTGA-CT-TGTGGGCTTTG
* * * *
1083863 AAAATAGTTGCCATTGGCTTGTGTGGACTTTG
1 -AAA-GGATGCCACTGACTTGTG-GG-CTTTG
* * *
1083895 AAAAGAGTTACCACTGGCTTGTGGGCTTTGG
1 -AAAG-GATGCCACTGACTTGTGGGCTTT-G
1083926 AAATGG-TGCCACTGACTTGTGGGCTTTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
1083954 AAAAGG-TGCCACTGACTTGTGGGCTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
*
1083982 AAAGGATGCAACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
1084010 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
**
1084038 AAAATATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
1084066 AGAAAGATGCCATTGACTTGTGGGCTTTA
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
*
1084095 AGAAGGATGCCACTGACTTGCGGGCTTTG
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
* **
1084124 AAAGGATGCAACTGACTTGTGGTTTTTTG
1 AAAGGATGCCACTGACTTGTGG-GCTTTG
**
1084153 AAAAAATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
1084181 AAAGGATGCCACTGACCTGTGGG-TTTT
1 AAAGGATGCCACTGACTTGTGGGCTTTG
1084208 AAAGAGATG
1 AAAG-GATG
1084217 AACGTTCTAG
Statistics
Matches: 450, Mismatches: 54, Indels: 52
0.81 0.10 0.09
Matches are distributed among these distances:
27 15 0.03
28 203 0.45
29 109 0.24
30 60 0.13
31 14 0.03
32 49 0.11
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:1085477 original size:9 final size:8
Alignment explanation
Indices: 1085465--1085510 Score: 56
Period size: 9 Copynumber: 5.4 Consensus size: 8
1085455 TTTTTTTAAA
1085465 TTTTTTCTG
1 TTTTTT-TG
1085474 TTTTTTTG
1 TTTTTTTG
1085482 TTTCTTTTG
1 TTT-TTTTG
*
1085491 TTTTTTGTT
1 TTTTTT-TG
1085500 TTTTTTTG
1 TTTTTTTG
1085508 TTT
1 TTT
1085511 GGTACGAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
8 12 0.36
9 21 0.64
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.85
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1085494 original size:16 final size:17
Alignment explanation
Indices: 1085475--1085510 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
1085465 TTTTTTCTGT
1085475 TTTTTTG-TTTCTTTTG
1 TTTTTTGTTTTCTTTTG
*
1085491 TTTTTTGTTTTTTTTTG
1 TTTTTTGTTTTCTTTTG
1085508 TTT
1 TTT
1085511 GGTACGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (17 bp):
TTTTTTGTTTTCTTTTG
Found at i:1086491 original size:21 final size:21
Alignment explanation
Indices: 1086467--1086518 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
1086457 GACCCTTCTA
1086467 TTTTTGTTTGTTTGTTTT-TGG
1 TTTTTGTTTGTTT-TTTTATGG
* **
1086488 TTTTTTTTTGTTTTTTTATTT
1 TTTTTGTTTGTTTTTTTATGG
1086509 TTTTTGTTTG
1 TTTTTGTTTG
1086519 GTACGAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (21 bp):
TTTTTGTTTGTTTTTTTATGG
Found at i:1086494 original size:10 final size:9
Alignment explanation
Indices: 1086467--1086517 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
1086457 GACCCTTCTA
1086467 TTTTTGTTTG
1 TTTTT-TTTG
1086477 TTTGTTTTTGG
1 TTT-TTTTT-G
1086488 TTTTTTTT-
1 TTTTTTTTG
*
1086496 TGTTTTTTTA
1 T-TTTTTTTG
1086506 TTTTTTTTG
1 TTTTTTTTG
1086515 TTT
1 TTT
1086518 GGTACGAAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
8 1 0.03
9 17 0.47
10 12 0.33
11 6 0.17
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:1086499 original size:17 final size:17
Alignment explanation
Indices: 1086477--1086517 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
1086467 TTTTTGTTTG
1086477 TTTGTTTTTGGT-TTTTT
1 TTTGTTTTT-GTATTTTT
*
1086494 TTTGTTTTTTTATTTTT
1 TTTGTTTTTGTATTTTT
1086511 TTTGTTT
1 TTTGTTT
1086518 GGTACGAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTGTTTTTGTATTTTT
Found at i:1099648 original size:10 final size:10
Alignment explanation
Indices: 1099637--1099675 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
1099627 TTGATACATT
*
1099637 ACTGTTCATT
1 ACTGTTCATC
*
1099647 ACTGCTCATC
1 ACTGTTCATC
*
1099657 ACTATTCATC
1 ACTGTTCATC
1099667 ACTGTTCAT
1 ACTGTTCAT
1099676 GTATCGATAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.41
Consensus pattern (10 bp):
ACTGTTCATC
Found at i:1100204 original size:30 final size:31
Alignment explanation
Indices: 1100146--1100205 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
1100136 AAGTGATTGT
*
1100146 GAGGTTTTATCTTAGCTCGTGAAAAGATAGA
1 GAGGTTTCATCTTAGCTCGTGAAAAGATAGA
*
1100177 GAGGTTTCCATCTTAGC-CTTG-AAAGATAG
1 GAGGTTT-CATCTTAGCTCGTGAAAAGATAG
1100206 TATTGTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 8 0.31
31 10 0.38
32 8 0.31
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (31 bp):
GAGGTTTCATCTTAGCTCGTGAAAAGATAGA
Found at i:1107961 original size:22 final size:22
Alignment explanation
Indices: 1107936--1107979 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1107926 TTATCATTTC
* *
1107936 AAAACAGAAGTTGGTAAAAAAT
1 AAAACAAAAGTTGGAAAAAAAT
*
1107958 AAAATAAAAGTTGGAAAAAAAT
1 AAAACAAAAGTTGGAAAAAAAT
1107980 GAAATTGGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAACAAAAGTTGGAAAAAAAT
Found at i:1107984 original size:22 final size:22
Alignment explanation
Indices: 1107943--1107984 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1107933 TTCAAAACAG
*
1107943 AAGTTGGTAAAAAATAAAATAA
1 AAGTTGGAAAAAAATAAAATAA
*
1107965 AAGTTGGAAAAAAATGAAAT
1 AAGTTGGAAAAAAATAAAAT
1107985 TGGCAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (22 bp):
AAGTTGGAAAAAAATAAAATAA
Found at i:1107987 original size:16 final size:18
Alignment explanation
Indices: 1107958--1107995 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
1107948 GGTAAAAAAT
1107958 AAAATAAAAGTTGG-AAA
1 AAAATAAAAGTTGGCAAA
*
1107975 AAAATGAAA-TTGGCAAA
1 AAAATAAAAGTTGGCAAA
1107992 AAAA
1 AAAA
1107996 AAGTTGGACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.66, C:0.03, G:0.16, T:0.16
Consensus pattern (18 bp):
AAAATAAAAGTTGGCAAA
Found at i:1107992 original size:17 final size:17
Alignment explanation
Indices: 1107958--1108003 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
1107948 GGTAAAAAAT
1107958 AAAATAAAAGTTGGAAA
1 AAAATAAAAGTTGGAAA
* *
1107975 AAAATGAAA-TTGG-CA
1 AAAATAAAAGTTGGAAA
1107990 AAAA-AAAAGTTGGA
1 AAAATAAAAGTTGGA
1108004 CGAACCAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
14 3 0.12
15 9 0.38
16 4 0.17
17 8 0.33
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.17
Consensus pattern (17 bp):
AAAATAAAAGTTGGAAA
Found at i:1110331 original size:774 final size:771
Alignment explanation
Indices: 1108660--1110834 Score: 3058
Period size: 775 Copynumber: 2.8 Consensus size: 771
1108650 GCGACAATAA
* * *
1108660 AGCATCAATGTCATGTATCCTAATGAAGGGAACGTGCTTTTAGTTCCCAATCTCGAAAAGAATGG
1 AGCATCAATGTCATCTATCCTAATAAAGGGAACGTGTTTTTAGTTCCCAATCT-GAAAAGAATGG
* * *
1108725 AGACTATTACGAGAATCCATGTTTATCTCATTTATGGGATGGACTTTTATTTAAGGAAAATGGGG
65 AGACTATTACGAGAATCCATGTTTATCTAATTT-TAGGATGAACTTTTATTTAAGGAAAATGGGG
* * * * * *
1108790 CAAAGAAAAGCTTCCCTTGCGAAGCCAAAGCATCAATATCATTTATCCTAATGAGTAAAACAAGT
129 CAAAGAAAAGCTTTCCTTGTGAAGCCAAAGCATCAATATCATGTATCCTAATGAGGAGAACGAGT
* * * *
1108855 TTATGGT-GCCTAATCATGGAAAA-AATGAAGATCGTTACTAGAACCCATGTTTGTGTCATTTAA
194 TTATGGTGGCC-AATCA-CGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA
* * * * * *
1108918 GGCACGAACTTAGACTTTATGGGAAAAAAGTGGGAAGAAAAGCCTTTCTTACAAAGGCAAAGTAT
257 GGCACGAACTTAAACTTTAT-GGAAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAAGCAAAGCAT
* * ** ** * * **
1108983 TAGTATCATGTATCCTAATGAAAGGAATATGTTTATAGTGCCTAATCTT-AAAAGAATGGGGATT
321 CAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATT
* * * *
1109047 ATTA-CGAGAATCCATATTTATCTCAATTAAGAGAC-AACTTTGATTCTATG-AAAATAGTGCTA
386 GTTATC-AGAATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTA
* * *
1109109 AAAAAAGCTTTCCTTGCAAAGCCAAATCATCAATGTCATGTATTCCAATGAGGATCTTTT-ATGC
450 AAAAAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGAT-TTTTGGTGC
* * * * ** * *
1109173 CCAGTCA-CAAAAGGAATGGAGTA-TATTACAAGAGTCCATGTTTATCTTATTTGAGGAACGAAC
513 CTAGTCATGAAAA-GAGTGGA-AACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAAC
* * * *
1109236 TTTGATTCTAAGGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAAACC-TA-CATCAATATCGA
576 TTTGATTTTAAGAAAAATAGGTCAAA-AAAAG-TTTTCTTGC-GAAACCAAAGCATCAATATCGA
* *
1109299 TAAAGAGAACATGTTTATGGTGCCAAATCATGAAAAGATGGACATTGGTATAATAATCCAAGTTT
638 TAAAGAGAACATGTTTATGGTGCCAAATCATGAAAAGATAGACATTGGTATAACAATCCAAGTTT
* * * * * *
1109364 GTCTCATTTGAGGGATGAGCTTTGATTCTATCGAAAATGATGGAAAAAAAGTTTTTCTTATGACA
703 GTCTCATTTAAGGAACGAACTTTGATTCTATCAAAAATGATAGAAAAAAAGTTTTTCTTATGACA
*
1109429 TCAT
768 CCAT
* * * * * *
1109433 AGCATCAACGTCATTTATCCCAATATAGGGAACGTGTTTTTGGTTTCCAATCTTGAAAAGAATGG
1 AGCATCAATGTCATCTATCCTAATAAAGGGAACGTGTTTTTAGTTCCCAATC-TGAAAAGAATGG
*
1109498 AGACTATTATGAGAA-CACATGTTTATCTAATTTTAGGGATGAACTTTTATTTCAAGGAAAATGG
65 AGACTATTACGAGAATC-CATGTTTATCTAATTTTA-GGATGAACTTTTATTT-AAGGAAAATGG
* * * * * *
1109562 GGTAACGAAAAGCTTTCTTTGTGAAGCCAAAGCATCGATATCATGTATCCTAATGAGGAGAATGG
127 GGCAAAGAAAAGCTTTCCTTGTGAAGCCAAAGCATCAATATCATGTATCCTAATGAGGAGAACGA
1109627 GTTTATGGTGGCCAATCACGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA
192 GTTTATGGTGGCCAATCACGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA
* *
1109692 GGCACGAACTTAAACTTTATGGAAACAAGGTGGGAAGAAAAGTCTATCTCATAAAAGCAAAGCAT
257 GGCACGAACTTAAACTTTATGGAAA-AAGGTGGGAAGAAAAGTCTTTCTTATAAAAGCAAAGCAT
*
1109757 CAATATTGTGTACCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATT
321 CAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATT
1109822 GTTATCAGAATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAA
386 GTTATCAGAATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAA
1109887 AAAAACTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTA
451 AAAAACTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTA
1109952 GTCATGAAAAGAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGA
516 GTCATGAAAAGAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGA
*
1110017 TTTTAAGAAAAATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGA
581 TTTTAAGAAAAATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAAGAGA
** * * *
1110082 ATTTGTTTATGGTGCCCAAA-CATGAAAAGATAGAGATTGGTA-AGACGATCCAAGTTTGTTTCA
646 ACATGTTTATGGTG-CCAAATCATGAAAAGATAGACATTGGTATA-ACAATCCAAGTTTGTCTCA
*
1110145 TTTAAGGAACGAACTTTGATTTTATCAAAAAT-AGTAGAAAAAAAGTTTTTCTTATGACACCAT
709 TTTAAGGAACGAACTTTGATTCTATCAAAAATGA-TAGAAAAAAAGTTTTTCTTATGACACCAT
* *
1110208 AG-ATTCAATGTCATCTATCCTAATAAAGGGAACATGTTTTTAGTTCCCAATCATGAAAAGAATA
1 AGCA-TCAATGTCATCTATCCTAATAAAGGGAACGTGTTTTTAGTTCCCAATC-TGAAAAGAATG
* * * *
1110272 AAGACTATTACGAGAATCTATGTTTATCTAATTTCTAGGATGAACTTTT-TTGTAAGGAAACTGT
64 GAGACTATTACGAGAATCCATGTTTATCTAATTT-TAGGATGAACTTTTATT-TAAGGAAAATGG
* * *
1110336 GGCAATGGAAAGCTTTCCTTGAT-AAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAAC
127 GGCAAAGAAAAGCTTTCCTTG-TGAAGCCAAAGCATCAATATCATG-TATCCTAATGAGGAGAAC
* * *
1110400 GAGTTTATGATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
190 GAGTTTATGGTGGCCAATCACGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
1110465 GAGGCATGAACTTAAACTTTATGG-AAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCA
255 AAGGCACGAACTTAAACTTTATGGAAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAAGCAAAGCA
*
1110529 TCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGAT
320 TCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGAT
1110594 TGTTATCAGAATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTA
385 TGTTATCAGAATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTA
1110659 AAAAAACTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCT
450 AAAAAACTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCT
* *
1110724 AGTCATG-AAAGAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTG
515 AGTCATGAAAAGAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTG
1110788 ATTTTAAGAAAAATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGC
580 ATTTTAAGAAAAATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGC
1110835 TTTCCTTGAT
Statistics
Matches: 1261, Mismatches: 116, Indels: 51
0.88 0.08 0.04
Matches are distributed among these distances:
772 104 0.08
773 349 0.28
774 272 0.22
775 371 0.29
776 144 0.11
777 21 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (771 bp):
AGCATCAATGTCATCTATCCTAATAAAGGGAACGTGTTTTTAGTTCCCAATCTGAAAAGAATGGA
GACTATTACGAGAATCCATGTTTATCTAATTTTAGGATGAACTTTTATTTAAGGAAAATGGGGCA
AAGAAAAGCTTTCCTTGTGAAGCCAAAGCATCAATATCATGTATCCTAATGAGGAGAACGAGTTT
ATGGTGGCCAATCACGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCA
CGAACTTAAACTTTATGGAAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAAGCAAAGCATCAATA
TTGTGTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTAT
CAGAATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAA
CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCAT
GAAAAGAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTA
AGAAAAATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAAGAGAACATG
TTTATGGTGCCAAATCATGAAAAGATAGACATTGGTATAACAATCCAAGTTTGTCTCATTTAAGG
AACGAACTTTGATTCTATCAAAAATGATAGAAAAAAAGTTTTTCTTATGACACCAT
Found at i:1111169 original size:158 final size:156
Alignment explanation
Indices: 1110830--1123540 Score: 3252
Period size: 158 Copynumber: 82.3 Consensus size: 156
1110820 TTGCGAAACC
* * * *
1110830 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1110892 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1110955 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1110989 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1111053 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* * *
1111117 AACTTGGATTCTATGAAAAATGGTGCTAAA
127 AACTTTGATTTTATGAAAAATGGTGCAAAA
* * * ** * *
1111147 AAAGCTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1111205 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1111267 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1111297 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1111351 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1111414 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1111444 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1111505 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * * *
1111569 ATGAACTTT--TTTGGAAGGAAACT-GTGGCAACGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * * *
1111602 AAAGTTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1111664 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1111727 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1111761 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * * *
1111825 GTGCCTAATCTTGAAAAGAG-CGATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1111889 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1111920 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * ** * *
1111977 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGCCCATGTTTGTC-CTATTTGAGGA-AT
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA-
*
1112038 GAACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 -AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1112069 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * ** * * * *
1112123 GTGCCCAAACATGAAAATA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1112186 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1112216 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1112277 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1112341 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1112374 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1112436 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1112499 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1112533 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1112597 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1112661 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1112692 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1112749 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1112811 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1112841 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1112895 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1112958 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1112988 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1113049 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1113113 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1113146 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1113208 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1113271 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1113305 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * * *
1113369 GTGCCTAATCTTGAAAAGAG-CGATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1113433 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1113464 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * ** * *
1113521 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGCCCATGTTTGTC-CTATTTGAGGA-AT
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA-
*
1113582 GAACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 -AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1113613 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * ** * * * *
1113667 GTGCCCAAACATGAAAATA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1113730 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1113760 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1113821 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * *
1113885 ATGAACTTT--TTTGTAAGGAAACTAT-G-GCAATGA
124 ACAAACTTTGATTT-T-ATGAAA-AATGGTGCAA-AA
* * * *
1113918 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1113980 AT-GATGCCCAATCATGAAAAGAAT-GAAGATGATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1114043 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1114077 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1114141 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1114205 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1114236 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1114293 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1114355 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1114385 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1114439 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1114502 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1114532 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1114593 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1114657 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1114690 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1114752 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1114815 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1114849 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * * *
1114913 GTGCCTAATCTTGAAAAGAG-CGATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1114977 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** *
1115008 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTAT-CTCAA--TGAGG-A--T-TTT-TG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCT-AATGTGAGGAATGTGTTTATA
* * * * * ** * *
1115064 GTGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGCCCATGTTTGTC-CTATTTGAGGA-A
65 GTGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA
* *
1115125 TGAACTTTGATTTTAAGAAAAATAGGT-TAAAA
127 --AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1115157 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * ** * * * *
1115211 GTGCCCAAACATGAAAATA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1115274 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1115304 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1115365 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * *
1115429 ATGAACTTT--TTTGTAAGGAAACTAT-G-GCAATGA
124 ACAAACTTTGATTT-T-ATGAAA-AATGGTGCAA-AA
* * * *
1115462 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1115524 AT-GATGCCCAATCATGAAAAGAAT-GAAGATGATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1115587 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1115621 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1115685 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1115749 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1115780 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1115837 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1115899 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1115929 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1115983 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1116046 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * ** **
1116076 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCTAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1116137 TTAGTTCCCAATCATGAAAAGAATAAAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * **
1116201 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGG
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1116234 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1116296 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * *
1116359 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAAA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1116393 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1116457 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1116521 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1116552 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1116609 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1116671 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1116701 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1116755 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1116818 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1116848 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1116909 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1116973 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1117006 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1117068 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1117131 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1117165 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * * *
1117229 GTGCCTAATCTTGAAAAGAG-CGATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1117293 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1117324 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * ** * *
1117381 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGCCCATGTTTGTC-CTATTTGAGGA-AT
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA-
*
1117442 GAACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 -AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1117473 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * ** * * * *
1117527 GTGCCCAAACATGAAAATA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1117590 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1117620 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1117681 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * *
1117745 ATGAACTTT--TTTGTAAGGAAACTAT-G-GCAATGA
124 ACAAACTTTGATTT-T-ATGAAA-AATGGTGCAA-AA
* * * *
1117778 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1117840 AT-GATGCCCAATCATGAAAAGAAT-GAAGATGATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1117903 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1117937 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1118001 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1118065 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1118096 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1118153 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1118215 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1118245 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1118299 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1118362 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1118392 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1118453 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1118517 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1118550 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1118612 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1118675 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1118709 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1118773 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1118837 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1118868 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * *
1118925 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTC-CTATTTGAGGA-AT
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA-
*
1118986 GAACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 -AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1119017 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1119071 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1119134 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1119164 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1119225 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1119289 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1119322 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1119384 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1119447 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1119481 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1119545 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1119609 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1119640 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1119697 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1119759 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1119789 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1119843 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1119906 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1119936 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1119997 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1120061 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1120094 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1120156 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1120219 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1120253 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * * *
1120317 GTGCCTAATCTTGAAAAGAG-CGATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1120381 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1120412 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * ** * *
1120469 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGCCCATGTTTGTC-CTATTTGAGGA-AT
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA-
*
1120530 GAACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 -AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1120561 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * ** * * * *
1120615 GTGCCCAAACATGAAAATA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1120678 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1120708 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1120769 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1120833 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1120866 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1120928 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1120991 -CATGAACTTAAACTTTATGGAAAAT-GTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1121025 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1121089 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1121153 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1121184 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1121241 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1121303 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1121333 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1121387 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1121450 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1121480 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * * *
1121541 TTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1121605 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1121638 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1121700 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATTAAGG
** * * * *
1121763 -CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
124 ACA--AACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1121797 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1121861 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1121925 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1121956 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * ** * *
1122013 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGCCCATGTTTGTC-CTATTTGAGGA-AT
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTC-AATTAAGGACA-
*
1122074 GAACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 -AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1122105 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1122159 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1122222 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** **
1122252 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCCAAT-AAAGGGAACATGTTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1122313 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1122377 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1122410 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * *
1122472 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATT-AAG
* ** ** * * * *
1122535 CATGAACTTAAACTTTATGGAAAA-GGTGGGAAGA
123 GACAAACTTTGATTTTATGAAAAATGGT-GCAAAA
** *
1122569 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* * * *
1122633 GTGCCTAATCTTGAAAAGAGT-GATGATTGTTATCAGAATCCATATTTGTCTCAATTAAGAGACA
65 GTGCCCAATCATGAAAAGAGTAGA-GATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACA
* *
1122697 AACTTGGATTCTATGAAAAATGGTGCTAAAA
127 AACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * ** * *
1122728 AAA-CTTTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAA--TGAGG-A--T-TTT-TGG
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
* * * * * * * * *
1122785 TGCCTAGTCATG-AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGA-ATG
66 TGCCCAATCATGAAAAGAGTAGAGA-T-TATTACAGAATCCATGTTTGTCTCAATTAAGGACA--
*
1122847 AACTTTGATTTTAAGAAAAATAGGT-CAAAA
127 AACTTTGATTTTATGAAAAAT-GGTGCAAAA
* * * *
1122877 AAAG-TTTTCTTGCGAAA-CCAAAGCATCAATA-T-CG-A---TAA-G-GA-GAATTTGTTTATG
1 AAAGCTTTCCTTGC-AAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
* ** * * * *
1122931 GTGCCCAAACATGAAAAGA-TAGAGATTGGTA-AGACGATCCAAGTTTGTTTCATTTAAGGAACG
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTACAGA--ATCCATGTTTGTCTCAATTAAGG-ACA
* *
1122994 AACTTTGATTTTATCAAAAATAGTAG-AAAA
127 AACTTTGATTTTATGAAAAATGGT-GCAAAA
* * * * * ** * * ** ** *
1123024 AAAGTTTTTCTTATG-ACA-CCATAG-ATTCAATGTCATCTATCCGAAT-AAAGGGAACATATTT
1 AAAG-CTTTCCT-TGCAAAGCCAAAGCA-TCAATATTGTGTATCCTAATGTGA-GGAATGTGTTT
* * * * * * * *
1123085 TTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCT-AATTTCTAGG
62 ATAGTGCCCAATCATGAAAAGAGTAGAGATTATTAC-AGAATCCATGTTTGTCTCAA-TT-AAGG
** * * * *
1123149 ATGAACTTT--TTTGTAAGGAAACT-GTGGCAATGA
124 ACAAACTTTGATTT-TATGAAAAATGGT-GCAA-AA
* * * *
1123182 AAAGCTTTCCTTG-ATAAGCCAAAGCATCAATATCATGT-TATCCTAAAGAG-GAGAACGAGTTT
1 AAAGCTTTCCTTGCA-AAGCCAAAGCATCAATAT--TGTGTATCCTAATGTGAG-GAATGTGTTT
* * * *
1123244 AT-GATGCCCAATCATGAAAAGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 ATAG-TGCCCAATCATGAAAAGAGTAG-AGATTATTAC-AGAATCCATGTTTGTCTCAATT-AAG
** ** * * *
1123307 GATGAACTTAAACTTTATGGAAAAGTTGG-G-AAGA
123 GACAAACTTTGATTTTAT-GAAAA-ATGGTGCAAAA
** * * *
1123341 AAAGTCTTT-CTTATAAAACCAAAGCATCAATATCGTGTACCCTAATGTGAGGAATGTGTTTATA
1 AAAG-CTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATA
** ** * * *
1123405 GTGCCTGATGTTGAAAAGAATAGGGATTATTATCAGAATCTATGTTTGTCTCAATTAAGAGACAA
65 GTGCCCAATCATGAAAAGAGTAGAGATTATTA-CAGAATCCATGTTTGTCTCAATTAAG-GACAA
*
1123470 ACTTTGATTCTATGAAAAATGGTGCTAAAA
128 ACTTTGATTTTATGAAAAATGGTGC-AAAA
* * * * * *
1123500 TAAGCTTTCCTTGCAAAACCAAATCATTAATGTCGTGTATC
1 AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATC
1123541 TCAATGAAGA
Statistics
Matches: 9289, Mismatches: 2111, Indels: 2304
0.68 0.15 0.17
Matches are distributed among these distances:
142 16 0.00
143 80 0.01
144 1 0.00
145 112 0.01
146 112 0.01
147 995 0.11
148 306 0.03
149 512 0.06
150 820 0.09
151 304 0.03
152 112 0.01
153 16 0.00
154 33 0.00
155 32 0.00
156 221 0.02
157 756 0.08
158 2659 0.29
159 1778 0.19
160 385 0.04
161 37 0.00
162 1 0.00
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (156 bp):
AAAGCTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCCTAATGTGAGGAATGTGTTTATAG
TGCCCAATCATGAAAAGAGTAGAGATTATTACAGAATCCATGTTTGTCTCAATTAAGGACAAACT
TTGATTTTATGAAAAATGGTGCAAAA
Found at i:1111260 original size:486 final size:486
Alignment explanation
Indices: 1110344--1111320 Score: 1909
Period size: 486 Copynumber: 2.0 Consensus size: 486
1110334 GTGGCAATGG
1110344 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1110409 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1110474 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1110539 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
1110604 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1110669 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1110734 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
1110799 AATAGGTCAAAAAAAGTTTTCTTGCGAAACC
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACC
1110830 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1110895 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1110960 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
*
1111025 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
*
1111090 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAGCTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1111155 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1111220 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
1111285 AATAGGTCAAAAAAAGTTTTCTTGCGAAACC
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACC
1111316 AAAGC
1 AAAGC
1111321 ATCAATATCG
Statistics
Matches: 486, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
486 486 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (486 bp):
AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
AATAGGTCAAAAAAAGTTTTCTTGCGAAACC
Found at i:1112317 original size:772 final size:772
Alignment explanation
Indices: 1110830--1124274 Score: 24977
Period size: 772 Copynumber: 17.4 Consensus size: 772
1110820 TTGCGAAACC
1110830 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1110895 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1110960 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1111025 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
*
1111090 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAGCTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1111155 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1111220 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1111285 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1111350 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1111415 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1111480 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
* *
1111545 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGGAAGGAAACTGTGGCAACGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
*
1111602 AAAGTTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1111667 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1111732 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
*
1111797 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1111862 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1111927 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1111992 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1112057 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
*
1112122 GGTGCCCAAACATGAAAATATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1112187 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1112252 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1112317 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1112374 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1112439 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1112504 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1112569 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1112634 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1112699 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1112764 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1112829 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1112894 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1112959 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1113024 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1113089 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1113146 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1113211 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1113276 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
*
1113341 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1113406 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1113471 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1113536 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1113601 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
*
1113666 GGTGCCCAAACATGAAAATATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1113731 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1113796 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
*
1113861 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTATGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1113918 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
*
1113983 ATGCCCAATCATGAAAAGAATGAAGATGATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1114048 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1114113 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1114178 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1114243 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1114308 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1114373 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1114438 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1114503 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1114568 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1114633 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1114690 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1114755 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1114820 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
*
1114885 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1114950 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
*
1115015 CCTTGCAAAGCCAAATCATTAATGTCATGTATCTCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1115080 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
*
1115145 AATAGGTTAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
*
1115210 GGTGCCCAAACATGAAAATATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1115275 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1115340 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
*
1115405 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTATGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1115462 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
*
1115527 ATGCCCAATCATGAAAAGAATGAAGATGATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1115592 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1115657 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1115722 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1115787 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1115852 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1115917 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1115982 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1116047 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
* * *
1116112 CTATCCTAATAAAGGGAACATGTTTTTAGTTCCCAATCATGAAAAGAATAAAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
*
1116177 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGG
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1116234 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1116299 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* *
1116364 ACTTAAACTTTATGGAAAATGTGGGAAAAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1116429 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1116494 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1116559 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1116624 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1116689 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1116754 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1116819 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1116884 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1116949 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1117006 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1117071 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1117136 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
*
1117201 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1117266 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1117331 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1117396 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1117461 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
*
1117526 GGTGCCCAAACATGAAAATATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1117591 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1117656 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
*
1117721 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTATGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1117778 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
*
1117843 ATGCCCAATCATGAAAAGAATGAAGATGATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1117908 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1117973 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1118038 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1118103 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1118168 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1118233 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1118298 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1118363 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1118428 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1118493 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1118550 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1118615 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1118680 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1118745 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1118810 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1118875 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
*
1118940 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1119005 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1119070 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1119135 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1119200 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1119265 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1119322 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1119387 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1119452 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1119517 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1119582 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1119647 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1119712 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1119777 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1119842 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1119907 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1119972 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1120037 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1120094 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1120159 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1120224 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
*
1120289 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGCGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1120354 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1120419 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1120484 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1120549 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
*
1120614 GGTGCCCAAACATGAAAATATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1120679 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1120744 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1120809 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1120866 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1120931 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1120996 ACTTAAACTTTATGGAAAATGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1121061 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1121126 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1121191 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1121256 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1121321 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1121386 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1121451 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
*
1121516 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCAAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1121581 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1121638 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1121703 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1121768 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1121833 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1121898 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1121963 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
* *
1122028 GAGTGGAAACTATTTTAAGAGCCCATGTTTGTCCTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1122093 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1122158 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1122223 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
1122288 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1122353 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1122410 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
*
1122475 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1122540 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
1122605 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
1122670 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
261 ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
1122735 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
326 CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
1122800 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
391 GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
1122865 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
456 AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
1122930 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
521 GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
1122995 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
586 ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
* *
1123060 CTATCCGAATAAAGGGAACATATTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
651 CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
1123125 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
716 ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
1123182 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
1 AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
*
1123247 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGGATGA
66 ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* *
1123312 ACTTAAACTTTATGGAAAAGTTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATCGT
131 ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
* * * * * *
1123377 GTACCCTAATGTGAGGAATGTGTTTATAGTGCCTGATGTTGAAAAGAAT-AGGGATTATTATCAG
196 GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGA-TGATTGTTATCAG
* * * *
1123441 AATCTATGTTTGTCTCAATTAAGAGACAAACTTTGATTCTATGAAAAATGGTGCTAAAATAAGCT
260 AATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAA-AAACT
* * * * *
1123506 TTCCTTGCAAAACCAAATCATTAATGTCGTGTATCTCAATGAAGATTTTTGGTGCCTAGTCACGA
324 TTCCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATG-
* *
1123571 AAAGAGTGGAAACTA--TTACAGAGTCTATGTTTGTCTCATTTGAGGAATGAACTTTGATTTTAA
388 AAAGAGTGGAAACTATTTTA-AGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAA
* ** * * * * * **
1123634 GGAAAATACATTAAAGAAAAGCTTTTTTTGCAAAACCAAAGCATCAATATCAATAAAGAGAAAGT
452 GAAAAATAGGTCAAA-AAAAG-TTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTT
* * ** * * * * *
1123699 ATTTATGGTGTCCAGTCGTGAAAAGATGGAGATTGGTATGACAATCCAAGTTTGTCTCATTTAAG
515 GTTTATGGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAA-
* *
1123764 GGACCCAATCATGACAAGTGGAGATTGGTATGACAATCCAACTTTGATTCTAACAAAAACAGTAG
579 GG--------A--AC-----GA-ACT--T-TG---AT-----TTT-A---T--CAAAAATAGTAG
* * * * * * *
1123829 AAAATAATGTTTTTCTTCTCACACCATTGAATCAATGTCATCTATCCCAATGAAGGG-ACTGTGT
611 AAAA-AAAGTTTTTCTTATGACACCATAGATTCAATGTCATCTATCCCAATAAAGGGAAC-ATGT
* ** * * * * *
1123893 TTTTGGTTCTTAATCTGGGAAAGAATAGAGACTATTACGAGAATCTATGTTTGTCTCATTT-TGG
674 TTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCTATGTTTATCTAATTTCT-A
* * * *
1123957 GGATGAACTTTTATTTTAAAGAAAATGGGGCAATGA
738 GGATGAACTTTT-TTGTAAGGAAACTGTGGCAATGA
* * * *
1123993 AAAGCTTTCCTTG-TAAAGCCAAAGCATCAATAACGTG-TATCCTACTAG-GGAGAATGAGTTTA
1 AAAGCTTTCCTTGAT-AAGCCAAAGCATCAATATCATGTTATCCTA-AAGAGGAGAACGAGTTTA
*** * * * * * *
1124055 TGGCACCCAATTATGAAAAGAATGAAAATCGTTTCTAGAATCCATGTTTGTCTCATTTAAGGCAC
64 TGATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAT
* * * * * * * * *
1124120 AAACTTAGACTATATGGAAAAAGGTGGGAGGAAAAG-CTTTTCCTACAACACTAAAGCATCAATG
129 GAACTTAAACTTTATGG-AAAAGGTGGGAAGAAAAGTC-TTTCTTATAAAACCAAAGCATCAATA
* * * * * * * * * *
1124184 TTATGCATCCCTAAAG-AATGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGA-GATTATT
192 TTGTGTAT-CCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGT-GATGATTGTT
* * * *
1124247 ATGAGAATCCATGTTTATCTCATTTAAG
255 ATCAGAATCCATATTTGTCTCAATTAAG
1124275 GGATAAAATT
Statistics
Matches: 12413, Mismatches: 209, Indels: 63
0.98 0.02 0.00
Matches are distributed among these distances:
771 1 0.00
772 11780 0.95
773 116 0.01
774 20 0.00
775 92 0.01
776 2 0.00
784 1 0.00
786 2 0.00
791 2 0.00
792 2 0.00
794 1 0.00
795 2 0.00
798 2 0.00
803 3 0.00
804 1 0.00
807 1 0.00
809 18 0.00
810 204 0.02
811 156 0.01
812 6 0.00
813 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (772 bp):
AAAGCTTTCCTTGATAAGCCAAAGCATCAATATCATGTTATCCTAAAGAGGAGAACGAGTTTATG
ATGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
ACTTAAACTTTATGGAAAAGGTGGGAAGAAAAGTCTTTCTTATAAAACCAAAGCATCAATATTGT
GTATCCTAATGTGAGGAATGTGTTTATAGTGCCTAATCTTGAAAAGAGTGATGATTGTTATCAGA
ATCCATATTTGTCTCAATTAAGAGACAAACTTGGATTCTATGAAAAATGGTGCTAAAAAAACTTT
CCTTGCAAAGCCAAATCATTAATGTCATGTATCCCAATGAGGATTTTTGGTGCCTAGTCATGAAA
GAGTGGAAACTATTTTAAGAGTCCATGTTTGTCTTATTTGAGGAATGAACTTTGATTTTAAGAAA
AATAGGTCAAAAAAAGTTTTCTTGCGAAACCAAAGCATCAATATCGATAAGGAGAATTTGTTTAT
GGTGCCCAAACATGAAAAGATAGAGATTGGTAAGACGATCCAAGTTTGTTTCATTTAAGGAACGA
ACTTTGATTTTATCAAAAATAGTAGAAAAAAAGTTTTTCTTATGACACCATAGATTCAATGTCAT
CTATCCCAATAAAGGGAACATGTTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGA
ATCTATGTTTATCTAATTTCTAGGATGAACTTTTTTGTAAGGAAACTGTGGCAATGA
Found at i:1124659 original size:33 final size:33
Alignment explanation
Indices: 1124622--1124688 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1124612 TTCAACGATT
1124622 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1124655 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1124688 T
1 T
1124689 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1124660 original size:13 final size:13
Alignment explanation
Indices: 1124642--1124666 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1124632 CATAAAATGT
1124642 TGTATCGATACAA
1 TGTATCGATACAA
1124655 TGTATCGATACA
1 TGTATCGATACA
1124667 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1124747 original size:13 final size:13
Alignment explanation
Indices: 1124729--1124753 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1124719 ATTACTCAAA
1124729 TGTATCGATACAT
1 TGTATCGATACAT
1124742 TGTATCGATACA
1 TGTATCGATACA
1124754 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1124855 original size:52 final size:52
Alignment explanation
Indices: 1124762--1124885 Score: 198
Period size: 52 Copynumber: 2.4 Consensus size: 52
1124752 CACTGATCTT
*
1124762 TGTATCGATACATGCAGGC-AATTTACCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATT-AAA
*
1124813 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATTAAA
*
1124865 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
1124886 CTTTTCATAT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 19 0.28
52 46 0.68
53 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATTAAA
Found at i:1129162 original size:50 final size:50
Alignment explanation
Indices: 1129103--1129209 Score: 196
Period size: 50 Copynumber: 2.1 Consensus size: 50
1129093 AAATAGGGCA
1129103 AAGAGAAGGTTTCTTGCAAAGCAAAAGCATCAATATCGTGTATCCAAAAG
1 AAGAGAAGGTTTCTTGCAAAGCAAAAGCATCAATATCGTGTATCCAAAAG
* *
1129153 AAGAGAAGGTTTCTTGCAAAGCAAAAGCATTAATATCGTGTATCCAAATG
1 AAGAGAAGGTTTCTTGCAAAGCAAAAGCATCAATATCGTGTATCCAAAAG
1129203 AAGAGAA
1 AAGAGAA
1129210 TGGGTTTATA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (50 bp):
AAGAGAAGGTTTCTTGCAAAGCAAAAGCATCAATATCGTGTATCCAAAAG
Found at i:1134654 original size:15 final size:14
Alignment explanation
Indices: 1134636--1134679 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
1134626 CCATACATGG
1134636 TTGAATTCAACATCA
1 TTGAA-TCAACATCA
*
1134651 TTG-ATAAACATCA
1 TTGAATCAACATCA
1134664 TTGAAATCAACATCA
1 TTG-AATCAACATCA
1134679 T
1 T
1134680 CAGGATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 11 0.44
14 1 0.04
15 13 0.52
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (14 bp):
TTGAATCAACATCA
Found at i:1137690 original size:29 final size:29
Alignment explanation
Indices: 1137571--1137711 Score: 99
Period size: 29 Copynumber: 4.9 Consensus size: 29
1137561 CTATGCATCT
* * *
1137571 ACCCTTAAAC-TTCCAAAATTTCACTTTG
1 ACCCCTAAACTTTTCAAAATTACACTTTG
** * ** *
1137599 ACCTTTAAAATTCTTTGAAATTACACATTG
1 ACCCCTAAACTT-TTCAAAATTACACTTTG
* * * *
1137629 ATTCCC-AAACATTTCAAAATTAC-GTGTTA
1 A-CCCCTAAACTTTTCAAAATTACACT-TTG
1137658 ACCCCTAAACTTTTCAAAATTACACTTTG
1 ACCCCTAAACTTTTCAAAATTACACTTTG
* *
1137687 ACCCCTTAACTTTTCATAATTACAC
1 ACCCCTAAACTTTTCAAAATTACAC
1137712 ATTAACCTCA
Statistics
Matches: 84, Mismatches: 23, Indels: 11
0.71 0.19 0.09
Matches are distributed among these distances:
28 11 0.13
29 54 0.64
30 18 0.21
31 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (29 bp):
ACCCCTAAACTTTTCAAAATTACACTTTG
Found at i:1137726 original size:29 final size:29
Alignment explanation
Indices: 1137616--1137728 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
1137606 AAATTCTTTG
** *
1137616 AAATTACACATTGATTCCC-AAACATTTCA
1 AAATTACACATT-AACCCCTAAACTTTTCA
***
1137645 AAATTACGTGTTAACCCCTAAACTTTTCA
1 AAATTACACATTAACCCCTAAACTTTTCA
* * *
1137674 AAATTACACTTTGACCCCTTAACTTTTCA
1 AAATTACACATTAACCCCTAAACTTTTCA
* * *
1137703 TAATTACACATTAACCTCAAAACTTT
1 AAATTACACATTAACCCCTAAACTTT
1137729 AAAATGCTTG
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
28 4 0.06
29 62 0.94
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.35
Consensus pattern (29 bp):
AAATTACACATTAACCCCTAAACTTTTCA
Found at i:1144394 original size:80 final size:81
Alignment explanation
Indices: 1144270--1144559 Score: 284
Period size: 80 Copynumber: 3.6 Consensus size: 81
1144260 ATTTTTGGTG
* * * *
1144270 AAAATTGGGTTGGATTATCCCTTCGAAAATGGTAAGGTTGGAGTATCCCTTGAGATGAA-AATTT
1 AAAATGGGGTTGGAGTATCCCTTCGAAAATGATAAGGTTGGAGTATCCCTTGAGATGAAGAAATT
** *
1144334 TGATGTTTTGGAAAATA
66 CAATGTTTTAG-AAATA
* *
1144351 AAAATGGGGTTGGAGTATCCC-ACGAAAATGATCAGGTTGGAGTAT-CCTTAGAGATGAAGAAAT
1 AAAATGGGGTTGGAGTATCCCTTCGAAAATGATAAGGTTGGAGTATCCCTT-GAGATGAAGAAAT
*
1144414 TCAATGTTTTAGAAGTA
65 TCAATGTTTTAGAAATA
* * ** * *
1144431 AAAATGGGGTTAGAGTATCCCTTCGAAATTGATGGGGTAGGAGTATCCC-AGAGATGAAGAAATT
1 AAAATGGGGTTGGAGTATCCCTTCGAAAATGATAAGGTTGGAGTATCCCTTGAGATGAAGAAATT
*
1144495 CAATATTTTA-AAAGTA
66 CAATGTTTTAGAAA-TA
*** * ** * **
1144511 AAAACATGGTTTGAGTATCCCCCCGAAATTGATGGGGTTGGAGTATCCC
1 AAAATGGGGTTGGAGTATCCCTTCGAAAATGATAAGGTTGGAGTATCCC
1144560 CTCGAAAACA
Statistics
Matches: 178, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
79 6 0.03
80 120 0.67
81 50 0.28
82 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (81 bp):
AAAATGGGGTTGGAGTATCCCTTCGAAAATGATAAGGTTGGAGTATCCCTTGAGATGAAGAAATT
CAATGTTTTAGAAATA
Found at i:1144636 original size:109 final size:108
Alignment explanation
Indices: 1144434--1144666 Score: 288
Period size: 109 Copynumber: 2.1 Consensus size: 108
1144424 AGAAGTAAAA
* * *** **
1144434 ATGGGGTTAGAGTATCCCTTCGAAATTGATGGGGTAGGAGTATCCCAGAGATGAAGAAATTCAAT
1 ATGGGGTTGGAGTATCCCCTCGAAAACAATAAGGTAGGAGTATCCCAGAGATGAAGAAATTCAAT
* * *
1144499 ATTTTAAAAGTAAAAACATGGTTTGAGTATCCCCCC-GAAATTG
66 ATTTTAAAAGTAAAAACAGGGCTAGAGTATCCCCCCAG-AATTG
* *
1144542 ATGGGGTTGGAGTATCCCCTCGAAAACAATAAGGTTGGAGTATCCCTAGAGATTAAGAAATTCAA
1 ATGGGGTTGGAGTATCCCCTCGAAAACAATAAGGTAGGAGTATCCC-AGAGATGAAGAAATTCAA
** * **
1144607 TATTTTAAAAGTAAAAATGGGGCTAGAGTATTCCTTCAGAATTG
65 TATTTTAAAAGTAAAAACAGGGCTAGAGTATCCCCCCAGAATTG
1144651 ATGGGGTTGGAGTATC
1 ATGGGGTTGGAGTATC
1144667 TCTAAAGATG
Statistics
Matches: 106, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
108 38 0.36
109 67 0.63
110 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (108 bp):
ATGGGGTTGGAGTATCCCCTCGAAAACAATAAGGTAGGAGTATCCCAGAGATGAAGAAATTCAAT
ATTTTAAAAGTAAAAACAGGGCTAGAGTATCCCCCCAGAATTG
Found at i:1144730 original size:81 final size:81
Alignment explanation
Indices: 1144574--1144749 Score: 199
Period size: 81 Copynumber: 2.2 Consensus size: 81
1144564 AAAACAATAA
* * * *
1144574 GGTTGGAGTATCCCTAGAGATTAAGAAATTCAATATTTTAAAAGTAAAAATGGGGCTAGAGTATT
1 GGTTGGAGTATCCCTAAAGATGAAGAAATTCAATATTTTAAAAGTAAAAATGGGGCTAGACTATC
*
1144639 CCTTCAGAATTGATGG
66 CCCTCAGAATTGATGG
* * * * * * * *
1144655 GGTTGGAGTATCTCTAAAGATGAAGAAATTTAATGTTTTAGAAGTAAAGATGGTGTTGGACTATC
1 GGTTGGAGTATCCCTAAAGATGAAGAAATTCAATATTTTAAAAGTAAAAATGGGGCTAGACTATC
* *
1144720 CCCTCGGAATTGATGA
66 CCCTCAGAATTGATGG
* *
1144736 GATTTGAGTATCCC
1 GGTTGGAGTATCCC
1144750 CGATGGTGAA
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (81 bp):
GGTTGGAGTATCCCTAAAGATGAAGAAATTCAATATTTTAAAAGTAAAAATGGGGCTAGACTATC
CCCTCAGAATTGATGG
Found at i:1147858 original size:65 final size:65
Alignment explanation
Indices: 1147773--1148450 Score: 413
Period size: 65 Copynumber: 10.6 Consensus size: 65
1147763 AAAAAAGGGA
* * * * *
1147773 TAAAAGGTACCACCAGCTTGTGTGGGCTTTAAAAGAAAAAGAAAAACATCTTGCTCTTTGAACAC
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAGAC
* * *
1147838 TAAAAAGTGCCACCAACTTGTGGGGGC-TTAACAAGAAAAAG----GCATCCTGCTTTTTGAAGA
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AAGAAAAAGAAAAGCATCCTGCTCTTTGAAGA
1147898 C
65 C
*
1147899 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG----TCATCCTGCTCTTTG-AGA
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAG-
1147959 AC
64 AC
* * * * * * *
1147961 TAAAAAGTGCAACCATCTTGTGTGAGCTTTAAAAGAGAAAGAAAAGCATCCTACTCTTTGAGGAC
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAGAC
* * * * * * ** * *
1148026 TAAAAAGTG--ACCAATTTGCGAGAGCTGTAAAAAGAAAAA-AAAAGTGTCTTGCTCTTTGAGGA
1 TAAAAGGTGCCACCAACTTGTGTGGGCT-TTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAGA
1148088 C
65 C
* * * * ** * *
1148089 TAAAAGGTGTCACTAACTTATATGGGCTTTAAAA-AAAAAG----GTGTCCTACTCTTTGAGGAC
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAGAC
* * * * * * *
1148149 TAAAAGGTGCCACTAACTTATATGAGCTTT----GAAAAAGAAAAGGAGTCTTGCT-TTTTAAGG
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCA-TCCTGCTCTTTGAA-G
1148209 AC
64 AC
* * * * * * *
1148211 AAAAGGGATAAAAGGTGCTACCAGCTTGTATGCGCTTTAAATGGAAAAG----GCATCCTACTCT
1 --------TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCT
*
1148272 TTGAGGAC
58 TTGAAGAC
* * * * * * * *
1148280 TAAAAAGTGCCACCAGCTTGTGTAGGTTTTAAAAGAAAAAGAAAAACGTACTGCACTTTGAAGAC
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAGAC
* * * * *** * *
1148345 TAAAAGATGCCACTAACTTGTATGGGCTTTAACAAAAAAAAGAAAAATGTCTTGCTCTTTGAGGA
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AAGAAAAAGAAAAGCATCCTGCTCTTTGAAGA
1148410 C
65 C
* *
1148411 TCAAAGGTGCCACAAACTTGTGTGGGCTTTAAAA-AAAAAG
1 TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
1148451 GCATCCTACT
Statistics
Matches: 484, Mismatches: 91, Indels: 77
0.74 0.14 0.12
Matches are distributed among these distances:
57 6 0.01
60 46 0.10
61 91 0.19
62 60 0.12
63 48 0.10
64 25 0.05
65 107 0.22
66 56 0.12
69 8 0.02
70 31 0.06
74 6 0.01
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (65 bp):
TAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGCATCCTGCTCTTTGAAGAC
Found at i:1148032 original size:188 final size:188
Alignment explanation
Indices: 1147707--1148158 Score: 448
Period size: 188 Copynumber: 2.4 Consensus size: 188
1147697 TAAAGTAGAC
*
1147707 AGGTGCCACCAACTTGTGTGGGCTTTGAAAAAGAAAAA--CAATCCTGCTTTTTGAGGAAAAAAG
1 AGGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAAAGTC-ATCCTGCTCTTTGA-G----AA-
* * * * * *
1147770 GGATAAAAGGTACCACCAGCTTGTGTGGGCTTTAAAAGAAAAAGAAAAACATCTTGCTCTTTGAA
58 --CTAAAAGGTGCAACCAGCTTGTGTGAGCTTTAAAAGAAAAAGAAAAACATCCTACTCTTTGAA
* * * * * *
1147835 CACTAAAAAGTGCCACCAACTTGTGGGGGCT-TAACAAG-AAAAAGGCATCCTGCTTTTTGAAGA
121 CACTAAAAAGTG--ACCAACTTGCGAGAGCTGTAAAAAGAAAAAAAGCATCCTGCTCTTTGAAGA
1147898 CTAAA
184 CTAAA
*
1147903 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGTCATCCTGCTCTTTGAGAACTAAAAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGTCATCCTGCTCTTTGAGAACTAAAAGG
* * * **
1147968 TGCAACCATCTTGTGTGAGCTTTAAAAGAGAAAGAAAAGCATCCTACTCTTTGAGGACTAAAAAG
66 TGCAACCAGCTTGTGTGAGCTTTAAAAGAAAAAGAAAAACATCCTACTCTTTGAACACTAAAAAG
* ** * *
1148033 TGACCAATTTGCGAGAGCTGTAAAAAGAAAAAAAAAGTGTCTTGCTCTTTGAGGACTAAA
131 TGACCAACTTGCGAGAGCTGTAAAAAG--AAAAAAAGCATCCTGCTCTTTGAAGACTAAA
* * * * * * * *
1148093 AGGTGTCACTAACTTATATGGGCTTTAAAAA-AAAAGGT-GTCCTACTCTTTGAGGACTAAAAGG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGTCATCCTGCTCTTTGAGAACTAAAAGG
1148156 TGC
66 TGC
1148159 CACTAACTTA
Statistics
Matches: 217, Mismatches: 33, Indels: 20
0.80 0.12 0.07
Matches are distributed among these distances:
186 13 0.06
187 6 0.03
188 87 0.40
189 6 0.03
190 51 0.24
191 2 0.01
195 12 0.06
196 39 0.18
197 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (188 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGTCATCCTGCTCTTTGAGAACTAAAAGG
TGCAACCAGCTTGTGTGAGCTTTAAAAGAAAAAGAAAAACATCCTACTCTTTGAACACTAAAAAG
TGACCAACTTGCGAGAGCTGTAAAAAGAAAAAAAGCATCCTGCTCTTTGAAGACTAAA
Found at i:1148145 original size:60 final size:61
Alignment explanation
Indices: 1148059--1148191 Score: 207
Period size: 60 Copynumber: 2.2 Consensus size: 61
1148049 GCTGTAAAAA
* * * *
1148059 GAAAAAAAAA-GTGTCTTGCTCTTTGAGGACTAAAAGGTGTCACTAACTTATATGGGCTTT
1 GAAAAAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACTAACTTATATGAGCTTT
1148119 -AAAAAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACTAACTTATATGAGCTTT
1 GAAAAAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACTAACTTATATGAGCTTT
1148179 GAAAAAGAAAAGG
1 GAAAAA-AAAAGG
1148192 AGTCTTGCTT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
59 9 0.14
60 46 0.70
61 5 0.08
62 6 0.09
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (61 bp):
GAAAAAAAAAGGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACTAACTTATATGAGCTTT
Found at i:1148387 original size:66 final size:65
Alignment explanation
Indices: 1148270--1148449 Score: 211
Period size: 66 Copynumber: 2.8 Consensus size: 65
1148260 GCATCCTACT
* * * * *
1148270 CTTTGAGGACTAAAA-AGTGCCACCAGCTTGTGTAGGTTTTAAAAGAAAAAGAAAAACGTAC-TG
1 CTTTGAGGACTAAAAGA-TGCCACAAACTTGTGTGGGCTTTAAAAAAAAAAGAAAAACGT-CTTG
1148333 CA
64 CA
* * * *
1148335 CTTTGAAGACTAAAAGATGCCACTAACTTGTATGGGCTTTAACAAAAAAAAGAAAAATGTCTTGC
1 CTTTGAGGACTAAAAGATGCCACAAACTTGTGTGGGCTTTAA-AAAAAAAAGAAAAACGTCTTGC
*
1148400 T
65 A
* *
1148401 CTTTGAGGACTCAAAGGTGCCACAAACTTGTGTGGGCTTTAAAAAAAAA
1 CTTTGAGGACTAAAAGATGCCACAAACTTGTGTGGGCTTTAAAAAAAAA
1148450 GGCATCCTAC
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
65 42 0.43
66 56 0.57
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (65 bp):
CTTTGAGGACTAAAAGATGCCACAAACTTGTGTGGGCTTTAAAAAAAAAAGAAAAACGTCTTGCA
Found at i:1149161 original size:64 final size:62
Alignment explanation
Indices: 1148951--1150062 Score: 484
Period size: 65 Copynumber: 17.3 Consensus size: 62
1148941 TACCACCAGC
* *
1148951 CTTGTGTGGGCTTTAAAAGAAAAGAATAAAAACATCCTTGCTCTTTGAACACTAAAAAGTGCCAC
1 CTTGTGTGGGCTTT---A-AAAAGAAGAAAAGCATCC-TGCTCTTTGAA-ACTAAAAAGTGCCAC
1149016 CAA
60 CAA
* * * *
1149019 CTTGTGGGGGC-TTAACAAGGAAGAAAAGGCATCCTGCTTTTTGAAACT-AAAGGTGCCACCAA
1 CTTGTGTGGGCTTTAA-AAAGAAGAAAA-GCATCCTGCTCTTTGAAACTAAAAAGTGCCACCAA
* * *
1149081 CTTGTGTGGGCTTTAAAAAGAAGAAAAGTCCATCCTGCTCTTTGGAACTAAAAAGTGCAACCAT
1 CTTGTGTGGGCTTTAAAAAGAAGAAAAG--CATCCTGCTCTTTGAAACTAAAAAGTGCCACCAA
* * * * *
1149145 CTTGTGTGAGCTTTAAAAGAGAAAGAAAAGCATCCTACTCTTTGAGGACTAAAAAATGTCACCAA
1 CTTGTGTGGGCTTTAAAA-AG-AAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCAA
* * * * * ** * * * * *
1149210 TTTGTGAGAGCTGTAAAAAGAAAAAAAAAAGTGTCTTGCTCTTTGAGGACTAAAAGGTGTCACTA
1 CTTGTGTGGGCTTTAAAAAG---AAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCA
1149275 A
62 A
* * * ** * * * *
1149276 CTTATATGGGCTTT-AAAA-AA-AAAGGTGTCCTACTCTTTGAGGACTAAAAGGTGCCACTAA
1 CTTGTGTGGGCTTTAAAAAGAAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCAA
* * * * * * * * *
1149336 CTTATATGAGCTTT-GAAA-AAGAAAAGGAGTCTTGCTTTTTAAGGACAAAAGGGATAAAAGGTG
1 CTTGTGTGGGCTTTAAAAAGAAGAAAAGCA-TCCTGCTCTTT---G---AAA---CTAAAAAGTG
* *
1149399 CTACCAG
56 CCACCAA
* ** * * * *
1149406 CTTGTATGCACTTT-AAATG--GAAAAGGCATCCTACTCTTTGAGGACTAAAAAGTGCCACCAG
1 CTTGTGTGGGCTTTAAAAAGAAGAAAA-GCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCAA
* * * * * * *
1149467 CTTGTGTAGGTTTTAAAAGAAAAAGAAAAACATACTGCACTTTGAAGACT-AAAAGATGCCACTA
1 CTTGTGTGGGCTTT-AAA-AAGAAGAAAAGCATCCTGCTCTTTGAA-ACTAAAAAG-TGCCACCA
1149531 A
62 A
* * *** * * * * *
1149532 CTTGTATGGGCTTTAACAAGAAAAAGAAAAATGTCTTGCTCTTTGAGGACTCAAAGGTGCCACAA
1 CTTGTGTGGGCTTT-A-AA-AAGAAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCA
1149597 A
62 A
* * * * * *
1149598 CTTGTGTGGGCTTT-AAAA-AA-AAAGGCATCCTACTCTTTCAGGACTAAAAGGTG-CAACAA
1 CTTGTGTGGGCTTTAAAAAGAAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCAA
* * * *
1149657 GCTTGTGTGGG-TTTAAAAAGAAAAAGACAAGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACC
1 -CTTGTGTGGGCTTTAAAAAG---AAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACC
1149721 AA
61 AA
* * * * * *
1149723 CTTGTATGGGCTTTAAAAATTTTTAAAAAAAAGGCATCCTGCTTTTTGAGGACTAAAAGGTGCCA
1 CTTGTGTGGGCTTTAAAAA-----GAAGAAAA-GCATCCTGCTCTTTGA-AACTAAAAAGTGCCA
1149788 CCAA
59 CCAA
* ** * * * *
1149792 CTTGTATGGGCTTTAAAAAGAA-AATGGCATCCTGCTCTTTGAGGACT-AATAGTTGCCACTAG
1 CTTGTGTGGGCTTTAAAAAGAAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAG-TGCCACCAA
** * * *
1149854 CTTGTG-GGGCTTTAAAAAGAA-AAAAGGGGTCTTGTTCTTTGAGGACT-AAAAGATGCCACCAA
1 CTTGTGTGGGCTTTAAAAAGAAGAAAA-GCATCCTGCTCTTTGA-AACTAAAAAG-TGCCACCAA
* * ** * * *
1149916 CTTGTGTAGGCTTTAAAAAGAAAGAAAGGTGTCCTGCTCTTTGAGGACTAAAAAGTGCGACCAG
1 CTTGTGTGGGCTTTAAAAAG-AAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCAA
* * ** ** * * *
1149980 CTTGTATGGGCTTTAAAAAAAAAAGAAAAGTGTCCCACTCTTTGAGGACTAAAAGGTGCCATCAA
1 CTTGTGTGGGCTTT--AAAAAGAAGAAAAGCATCCTGCTCTTTGA-AACTAAAAAGTGCCACCAA
* *
1150045 TTTGTGTGGCCTTTAAAA
1 CTTGTGTGGGCTTTAAAA
1150063 GAAAAAGAAA
Statistics
Matches: 831, Mismatches: 155, Indels: 121
0.75 0.14 0.11
Matches are distributed among these distances:
59 7 0.01
60 93 0.11
61 52 0.06
62 109 0.13
63 48 0.06
64 113 0.14
65 168 0.20
66 124 0.15
67 7 0.01
68 16 0.02
69 66 0.08
70 28 0.03
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (62 bp):
CTTGTGTGGGCTTTAAAAAGAAGAAAAGCATCCTGCTCTTTGAAACTAAAAAGTGCCACCAA
Found at i:1149484 original size:191 final size:183
Alignment explanation
Indices: 1149248--1150070 Score: 564
Period size: 191 Copynumber: 4.3 Consensus size: 183
1149238 AAGTGTCTTG
* * * * *
1149248 CTCTTTGAGGACTAAAAGGTGTCACTAA-CTTATATGGGCTTTAAAA-AAAAAG-GTGTCCTACT
1 CTCTTTGAGGACTAAAAGGTGCCAC-AAGCTTGTGTGGGTTTTAAAAGAAAAAGAGAGTCCTACT
* * *
1149310 CTTTGAGGACTAAAAGGTGCCACTAACTTATATGAGCTTTGAAAAAGAAAAGGA-GTCTTGCTTT
65 CTTTGAGGACTAAAAGGTGCCACTAACTTGTATGGGCTTTGAAAAAGAAAA--ATGTCTTGCTCT
* * * **
1149374 TTAAGGACAAAAGGGATAAAAGGTGCTACCAGCTTGTATGCACTTTAAATGGAAAAGGCATCCTA
128 TTAAGGAC--------TAAAAGGTGCCACAAACTTGTATGCACTTTAAA-AAAAAAGGCATCCTA
* * * * ** *
1149439 CTCTTTGAGGACTAAAAAGTGCCACCAGCTTGTGTAGGTTTTAAAAGAAAAAGAAAAACATACTG
1 CTCTTTGAGGACTAAAAGGTGCCACAAGCTTGTGTGGGTTTTAAAAGAAAAAGAGAGTCCTACT-
* *
1149504 CACTTTGAAGACTAAAAGATGCCACTAACTTGTATGGGCTTTAACAAGAAAAAGAAAAATGTCTT
65 --CTTTGAGGACTAAAAGGTGCCACTAACTTGTATGGGCTTT-----GAAAAAGAAAAATGTCTT
* * * **
1149569 GCTCTTTGAGGACTCAAAGGTGCCACAAACTTGTGTGGGCTTTAAAAAAAAAGGCATCCTA
123 GCTCTTTAAGGACTAAAAGGTGCCACAAACTTGTATGCACTTTAAAAAAAAAGGCATCCTA
* * * * *
1149630 CTCTTTCAGGACTAAAAGGTGCAACAAGCTTGTGTGGGTTTAAAAAGAAAAAGACAAGCGTCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACAAGCTTGTGTGGGTTTTAAAAGAAAAAG---AGAGTCCTA
* * * *
1149695 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAATTTTTAAAAAAAAGGCAT
63 CTCTTTGAGGACTAAAAGGTGCCACTAACTTGTATGGGCTTT-GAAA-----AAGAAAAATG--T
* * * * **
1149760 CCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAAGAAAATGGCATCCT
120 CTTGCTCTTTAAGGACTAAAAGGTGCCACAAACTTGTATGCACTTTAAAAA-AAAA-GGCATCCT
*
1149825 G
183 A
* * * * * * **
1149826 CTCTTTGAGGACTAATAGTTGCCACTAGCTTGTG-GGGCTTTAAAAAGAAAAA-AGGGGTCTTGT
1 CTCTTTGAGGACTAAAAGGTGCCACAAGCTTGTGTGGG-TTTTAAAAGAAAAAGA-GAGTCCTAC
* * * * *
1149889 TCTTTGAGGACTAAAAGATGCCACCAACTTGTGTAGGCTTT-AAAAAGAAAGAAAGGTGTCCTGC
64 TCTTTGAGGACTAAAAGGTGCCACTAACTTGTATGGGCTTTGAAAAAG-AA-AAA--TGTCTTGC
* * * * * ** ** *
1149953 TCTTTGAGGACTAAAAAGTGCGACCAGCTTGTATGGGCTTTAAAAAAAAAAGAAAAGTGTCCCA
125 TCTTTAAGGACTAAAAGGTGCCACAAACTTGTATGCACTTT-AAAAAAAAAG----GCATCCTA
* **
1150017 CTCTTTGAGGACTAAAAGGTGCCATCAA-TTTGTGTGGCCTTTAAAAGAAAAAGA
1 CTCTTTGAGGACTAAAAGGTGCCA-CAAGCTTGTGTGGGTTTTAAAAGAAAAAGA
1150071 AAAAAGGTGC
Statistics
Matches: 515, Mismatches: 79, Indels: 75
0.77 0.12 0.11
Matches are distributed among these distances:
186 2 0.00
187 7 0.01
188 50 0.10
189 5 0.01
190 2 0.00
191 180 0.35
192 46 0.09
193 49 0.10
194 52 0.10
195 7 0.01
196 87 0.17
199 1 0.00
200 16 0.03
201 11 0.02
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (183 bp):
CTCTTTGAGGACTAAAAGGTGCCACAAGCTTGTGTGGGTTTTAAAAGAAAAAGAGAGTCCTACTC
TTTGAGGACTAAAAGGTGCCACTAACTTGTATGGGCTTTGAAAAAGAAAAATGTCTTGCTCTTTA
AGGACTAAAAGGTGCCACAAACTTGTATGCACTTTAAAAAAAAAGGCATCCTA
Found at i:1149851 original size:322 final size:316
Alignment explanation
Indices: 1149050--1150062 Score: 914
Period size: 322 Copynumber: 3.2 Consensus size: 316
1149040 AGAAAAGGCA
* * * *
1149050 TCCTGCTTTTTGA-AACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAA---GAAGAAAAGT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAATTTAAAGAAAAG-
* * * * * *
1149110 CCATCCTGCTCTTTG-GAACTAAAAAGTGCAACCATCTTGTGTGAGCTTTAAAAGAGAAAGAAAA
65 GCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-AG-AA-AAAG
* * * * * * *
1149174 GCATCCTACTCTTTGAGGACTAAAAAATGTCACCAATTTGTGAGAGCTGTAAAAAGAAAAAAAAA
127 GCATCCTGCTCTTTGAGGACTAAAAGATGCCACTAACTTGT-AGGGCT-TTAAAAGAAAAAAAAA
* * * *
1149239 AGTGTCTTGCTCTTTGAGGACTAAAAGGTGTCACTAACTTATATGGGCTTTAAAAAAAAAGGTGT
190 A-TGTCTTGCTCTTTGAGGACTAAAAGGTGCCACAAACTTGTGTGGGCTTTAAAAAAAAAGGTGT
* * *
1149304 CCTACTCTTTGAGGACTAAAAGGTGCCACTAA-CTTATATGAGCTTTGAAAAAG-AAAAG---GA
254 CCTACTCTTTGAGGACTAAAAGGTGCAAC-AAGCTTGTATG-GGTTT-AAAAAGAAAAAGAAAGA
1149364 G
316 G
* * * * * **
1149365 TCTTGCTTTTTAAGGACAAAAGGGATAAAAGGTGCTACCAGCTTGTATGCACTTT--AAA--T--
1 TCCTGCTCTTTGAGGAC--------TAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAATTTAA
* * * * *
1149424 GGAAAAGGCATCCTACTCTTTGAGGACTAAAAAGTGCCACCAGCTTGTGTAGG-TTTTAAAAGAA
58 AGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
* * * *
1149488 AAAGAAAAACATACTGCACTTTGAAGACTAAAAGATGCCACTAACTTGTATGGGCTTTAACAAGA
123 AAAG----GCATCCTGCTCTTTGAGGACTAAAAGATGCCACTAACTTGTA-GGGCTTTAA-AAGA
*
1149553 AAAAGAAAAATGTCTTGCTCTTTGAGGACTCAAAGGTGCCACAAACTTGTGTGGGCTTTAAAAAA
182 AAAA-AAAAATGTCTTGCTCTTTGAGGACTAAAAGGTGCCACAAACTTGTGTGGGCTTTAAAAAA
** * *
1149618 AAAGGCATCCTACTCTTTCAGGACTAAAAGGTGCAACAAGCTTGTGTGGGTTTAAAAAGAAAAAG
246 AAAGGTGTCCTACTCTTTGAGGACTAAAAGGTGCAACAAGCTTGTATGGGTTTAAAAAGAAAAAG
*
1149683 ACAAGCG
311 A-AAGAG
*
1149690 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAATTTTTAAAAAAAA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAA--TTTAAAGAAAA
* * * *
1149755 GGCATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAAGAAAATGGC
64 GGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGC
* * * * * ***
1149820 ATCCTGCTCTTTGAGGACTAATAGTTGCCACTAGCTTGTGGGGCTTTAAAA-AGAAAAAAGGGGT
129 ATCCTGCTCTTTGAGGACTAAAAGATGCCACTAACTTGTAGGGCTTTAAAAGAAAAAAAAAATGT
* * * *
1149884 CTTGTTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTAGGCTTTAAAAAGAAAGAAAGGTGTC
194 CTTGCTCTTTGAGGACTAAAAGGTGCCACAAACTTGTGTGGGCTTT--AAA-AAA-AAAGGTGTC
* * * * *
1149949 CTGCTCTTTGAGGACTAAAAAGTGCGACCAGCTTGTATGGGCTTTAAAAA-AAAAAGAAAAGTG
255 CTACTCTTTGAGGACTAAAAGGTGCAACAAGCTTGTATGGG-TTTAAAAAGAAAAAG-AAAGAG
** * * * *
1150012 TCCCACTCTTTGAGGACTAAAAGGTGCCATCAATTTGTGTGGCCTTTAAAA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAA
1150063 GAAAAAGAAA
Statistics
Matches: 567, Mismatches: 91, Indels: 73
0.78 0.12 0.10
Matches are distributed among these distances:
315 11 0.02
316 2 0.00
317 26 0.05
318 49 0.09
319 9 0.02
320 13 0.02
321 46 0.08
322 295 0.52
323 18 0.03
324 1 0.00
325 84 0.15
326 13 0.02
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (316 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAATTTAAAGAAAAGG
CATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCAT
CCTGCTCTTTGAGGACTAAAAGATGCCACTAACTTGTAGGGCTTTAAAAGAAAAAAAAAATGTCT
TGCTCTTTGAGGACTAAAAGGTGCCACAAACTTGTGTGGGCTTTAAAAAAAAAGGTGTCCTACTC
TTTGAGGACTAAAAGGTGCAACAAGCTTGTATGGGTTTAAAAAGAAAAAGAAAGAG
Found at i:1150256 original size:44 final size:44
Alignment explanation
Indices: 1150208--1150295 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
1150198 TTTTTTTTTT
* * * *
1150208 AAAAAGGAAAAGAGTGCCACTAACTCGTGTGGGCTTTCAAAAGG
1 AAAAAAGAAAAGAGTGCCACCAACTCATGTAGGCTTTCAAAAGG
* * * *
1150252 AAAAAAGAAATGGGTGCCACCAACTTATGTAGGCTTTGAAAAGG
1 AAAAAAGAAAAGAGTGCCACCAACTCATGTAGGCTTTCAAAAGG
1150296 GTTGCCACTG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (44 bp):
AAAAAAGAAAAGAGTGCCACCAACTCATGTAGGCTTTCAAAAGG
Found at i:1150302 original size:32 final size:31
Alignment explanation
Indices: 1150258--1150325 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 31
1150248 AAGGAAAAAA
*
1150258 GAAATGGGTGCCACCAACTTATGT-AGGCTTT
1 GAAAAGGGTGCCACCAACTTATGTGA-GCTTT
** *
1150289 GAAAAGGGTTGCCACTGACTTGTGTGAGCTTT
1 GAAAAGGG-TGCCACCAACTTATGTGAGCTTT
1150321 GAAAA
1 GAAAA
1150326 AAAAGGGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
31 7 0.23
32 23 0.74
33 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (31 bp):
GAAAAGGGTGCCACCAACTTATGTGAGCTTT
Found at i:1150360 original size:34 final size:36
Alignment explanation
Indices: 1150290--1150360 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
1150280 GTAGGCTTTG
* * *
1150290 AAAAGGGTTGCCACTGACTTGTGTGAGCTTTGAAAA
1 AAAAGGGATGCCACTAACTTGTGAGAGCTTTGAAAA
*
1150326 AAAAGGGATGCCACTAAGTTGT-AGA-CTTTGAAAA
1 AAAAGGGATGCCACTAACTTGTGAGAGCTTTGAAAA
1150360 A
1 A
1150361 GATGCCACTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 10 0.32
35 2 0.06
36 19 0.61
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (36 bp):
AAAAGGGATGCCACTAACTTGTGAGAGCTTTGAAAA
Found at i:1150369 original size:29 final size:29
Alignment explanation
Indices: 1150326--1150439 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
1150316 GCTTTGAAAA
*
1150326 AAAAGGGATGCCACTAAGTTGTAGACTTTG
1 AAAA-GGATGCCACTAAGTTGTGGACTTTG
* * ** *
1150356 AAAAAGATGCCACTGAGTCATGGAATTTG
1 AAAAGGATGCCACTAAGTTGTGGACTTTG
1150385 AAAAGGAT--CAC-AGAGTTGTGGACTTTG
1 AAAAGGATGCCACTA-AGTTGTGGACTTTG
* * *
1150412 AAATGGATACCACTGAGTTGTGGACTTT
1 AAAAGGATGCCACTAAGTTGTGGACTTT
1150440 AAGAAGGTTA
Statistics
Matches: 67, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
27 21 0.31
29 42 0.63
30 4 0.06
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.27
Consensus pattern (29 bp):
AAAAGGATGCCACTAAGTTGTGGACTTTG
Found at i:1150406 original size:27 final size:28
Alignment explanation
Indices: 1150376--1150435 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
1150366 CACTGAGTCA
1150376 TGGAATTTGAAAAGGAT-CACAGAGTTG
1 TGGAATTTGAAAAGGATACACAGAGTTG
* * *
1150403 TGGACTTTGAAATGGATACCACTGAGTTG
1 TGGAATTTGAAAAGGATA-CACAGAGTTG
1150432 TGGA
1 TGGA
1150436 CTTTAAGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 15 0.54
29 13 0.46
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (28 bp):
TGGAATTTGAAAAGGATACACAGAGTTG
Found at i:1158716 original size:155 final size:152
Alignment explanation
Indices: 1157846--1158977 Score: 727
Period size: 155 Copynumber: 7.4 Consensus size: 152
1157836 TTTAGGACTC
* ** * * * * * *
1157846 GATTTTAGAAAATTACGAAAATAGTCCTATAGGTATACCTTCGACATAAAAGTATTTCGATAACC
1 GATTCTAGAAAATTACGAAAAT-G-CCCCTAGGGATACCTTTGACGTGAAAGTA--TCGGTACCC
* * * * *
1157911 CTAAAAGACTTAAAAAGGTTATAGATGAGATGAACCTAT-CTAAAATACCCACTTTCGACATAAA
62 CTAAAGGACTTAAAAAGATTATAGATGGGATGAACCTATCCT-AAATACCCACCTTCGGCATAAA
* * * * *
1157975 AGCGGACCC-GATGACAACCTAGGAGTGG
126 AGTGAACCCAG-TGACAACCTAGAACT-T
* * * *
1158003 GA-TCTAGAAAATTAC-AAAGATG-CCCTAGGCGATACCTTCGACAT-AGAAGTACCTGATACCC
1 GATTCTAGAAAATTACGAAA-ATGCCCCTAGG-GATACCTTTGACGTGA-AAGTATC-GGTACCC
* * ** * *
1158064 CTAAAGGACTTAAAAAGGATTTTAAAAAGGATGAACTTATCCTAAATACCCACCTTTTGGCATAA
62 CTAAAGGACTTAAAAA-GATTATAGATGGGATGAACCTATCCTAAATACCCACC-TTCGGCATAA
** * * *
1158129 AAGCAAACCCAGTGACAATCTAGGACTC
125 AAGTGAACCCAGTGACAACCTAGAACTT
* * * * **
1158157 GCTTTTAAGAAAATTATC-AAAATG-CCCTAGGAGATAACTTTTACGTAGAAA-TACTCAATA-C
1 GATTCT-AGAAAATTA-CGAAAATGCCCCTAGG-GATACCTTTGACGT-GAAAGTA-TCGGTACC
* * * *
1158218 CCTAAAGGACTT-AAAAG-----AGATGGGATAAACCGATCCTAAATATCCAACTTCGGCATAAA
61 CCTAAAGGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAA
* **
1158277 AGTGGACCTGGTGACAACCTAAGAA-TT
126 AGTGAACCCAGTGACAACCT-AGAACTT
* * * *
1158304 GGTTCT-GAAAAATTATGAAAATGCCCCTAAAGGATACTTTTGACGTGAAAGTATCCCGGTACCC
1 GATTCTAG-AAAATTACGAAAATGCCCCT-AGGGATACCTTTGACGTGAAAGTAT--CGGTACCC
* * * * * * * *
1158368 CTAAAAGA-GTAAAAATAATATA-ACTGAGAAGAACCTATCCTAAATATCCACCTTCAGCATAAA
62 CTAAAGGACTTAAAAAGATTATAGA-TGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAA
* *
1158431 AGTGCACCCACTGACAACCTAGGAA-TT
126 AGTGAACCCAGTGACAACCTA-GAACTT
* * * ** *
1158458 GGTTCTA-AGAAATTACGAAAATGCCCATAGAGATACCTTCAATGTGAAAGTATCTTGGTACCCC
1 GATTCTAGA-AAATTACGAAAATGCCCCTAGGGATACCTTTGACGTGAAAGTATC--GGTACCCC
* * * *
1158522 TAAAGGACTTAAAAAGATTATAAATGGGATGAACATATCCTAAATATCCACCTTTGGCATAAAAG
63 TAAAGGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
* * *
1158587 TAAACTCGGTGACAACCTAGAACTT
128 TGAACCCAGTGACAACCTAGAACTT
* * * * * *
1158612 TATTTTAGTAAATTACAAAAATGCCCCTAGGGAAAACCTTTGACGTGAAAGTATTCGGGTACTCC
1 GATTCTAGAAAATTACGAAAATGCCCCTAGGG-ATACCTTTGACGTGAAAGTA-TC-GGTACCCC
* * *
1158677 TAAAAGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACTCACCTTCGACATAAAAG
63 TAAAGGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
* * * *
1158742 TGAACCCAGTGATAATCTAGTACTC
128 TGAACCCAGTGACAACCTAGAACTT
* * * **
1158767 GATTCTAGGAAATTATGAAAATGCTCCTAAGGGATA-CTTTCGACGT-AGAAGTACTCGGTATGC
1 GATTCTAGAAAATTACGAAAATGCCCCT-AGGGATACCTTT-GACGTGA-AAGTA-TCGGTACCC
* * * * *
1158830 CTAAAGGACCTAAAAAGGATTATAGATGAGATAAATCTATCCTAAATACCCA-CTTCCAGCATAA
62 CTAAAGGACTTAAAAA-GATTATAGATGGGATGAACCTATCCTAAATACCCACCTT-CGGCATAA
* * * *
1158894 AAGCATG--CCCGGTGACAACTTAGCACTC
125 AAG--TGAACCCAGTGACAACCTAGAACTT
* * * * * *
1158922 GGTTTTA-AAAGATTATGAAAATGCCCCTATGGGTATACCTTCGACATGCAAGTATC
1 GATTCTAGAAA-ATTACGAAAATGCCCCTA-GGG-ATACCTTTGACGTGAAAGTATC
1158978 CCGGTAACCC
Statistics
Matches: 773, Mismatches: 149, Indels: 108
0.75 0.14 0.10
Matches are distributed among these distances:
145 1 0.00
146 18 0.02
147 46 0.06
148 32 0.04
149 13 0.02
151 1 0.00
152 1 0.00
153 67 0.09
154 244 0.32
155 268 0.35
156 67 0.09
157 14 0.02
158 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (152 bp):
GATTCTAGAAAATTACGAAAATGCCCCTAGGGATACCTTTGACGTGAAAGTATCGGTACCCCTAA
AGGACTTAAAAAGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGTGA
ACCCAGTGACAACCTAGAACTT
Found at i:1160938 original size:164 final size:158
Alignment explanation
Indices: 1160754--1161103 Score: 359
Period size: 164 Copynumber: 2.2 Consensus size: 158
1160744 ATGGGAGTTT
* *
1160754 AATAATAATATTAT-ATGAATTTTAAAATTTAAACTAAAGAAAATCCCCCT-AAAAATATTTACG
1 AATAATAATATT-TGATGAATTTTAAAATTAAAAATAAA-AAAATCCCCCTGAAAAAT-TTTA-G
* ** ** **
1160817 -GAGTAG-AAAAATTCGTATTTTGGAAACATGAGAATTTCAAGGAAAAAATTTCAAAACTCATGA
62 AGAGT-GTAAAAATTCGTA-TTTCGAAA-AAAAGAATTTCAA--AAAAAA-TGAAAAACGAATGA
* ** * *
1160880 ATATTAATGAA-TTTTCAAAGCAGATTTAATGTAAATCA
121 AAACAAATGAATTTTTCAAAACAGATTTAATAT-AATCA
* * * *
1160918 AATGATAATATTTGATGAATTTTAAAAATTAAAAATGAAAAAATCCCCTTGAAAACTTTTAGAGA
1 AATAATAATATTTGATGAATTTT-AAAATTAAAAATAAAAAAATCCCCCTGAAAAATTTTAGAGA
*
1160983 GTGTAAAACTTCGTATTTCGAAAAAAAGAATTTCAAAAAAAATGAAAAACGAATGAAAACAAATG
65 GTGTAAAAATTCGTATTTCGAAAAAAAGAATTTCAAAAAAAATGAAAAACGAATGAAAACAAATG
* * *
1161048 AATTTTTGAAAACTGATTTAATATAATTA
130 AATTTTTCAAAACAGATTTAATATAATCA
1161077 AATAATAATATTTGATGAATTTTAAAA
1 AATAATAATATTTGATGAATTTTAAAA
1161104 ATTTTAAATC
Statistics
Matches: 157, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
158 4 0.03
159 44 0.28
160 23 0.15
162 11 0.07
163 10 0.06
164 48 0.31
165 17 0.11
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (158 bp):
AATAATAATATTTGATGAATTTTAAAATTAAAAATAAAAAAATCCCCCTGAAAAATTTTAGAGAG
TGTAAAAATTCGTATTTCGAAAAAAAGAATTTCAAAAAAAATGAAAAACGAATGAAAACAAATGA
ATTTTTCAAAACAGATTTAATATAATCA
Found at i:1161093 original size:159 final size:163
Alignment explanation
Indices: 1160885--1161253 Score: 405
Period size: 163 Copynumber: 2.3 Consensus size: 163
1160875 CATGAATATT
* * * *
1160885 AATGAA-TTTTCAAAGCAGATTTAATGTAAATCAAATGATAATATTTGATGAATTTTAAAAATTA
1 AATGAATTTTTCAAAACTGATTTAATAT-AATTAAATGATAATATTTGATGAATTTTAAAAATTA
** * * * *
1160949 AAAAT-GA-AAAAATCCCCTTGAAAACTTTTA-G-AGAGTGTAAAACTTCGTATTTCGA-AAA-A
65 AAAATCGATAAAAATCCCCACGAAAAATTTTACGAAGA-AG-AAAACTCCATATTT-GAGAAACA
*
1161008 -AA-GAATTTCAAAAAAAATGAAAAACGAATGAAAACA
127 TAAGGAATCT-AAAAAAAATGAAAAACGAATGAAAACA
* * **
1161044 AATGAATTTTTGAAAACTGATTTAATATAATTAAATAATAATATTTGATGAATTTTAAAAATTTT
1 AATGAATTTTTCAAAACTGATTTAATATAATTAAATGATAATATTTGATGAATTTTAAAAATTAA
* *
1161109 AAATCGATAAAAATCCTCACGAAAAATTTTACGAAGAAGCAAACTCCATATTTGAGAAACATAAG
66 AAATCGATAAAAATCCCCACGAAAAATTTTACGAAGAAGAAAACTCCATATTTGAGAAACATAAG
*** * *
1161174 GAATCTAGGGAAAATGAAAAACTAATGAAAATA
131 GAATCTAAAAAAAATGAAAAACGAATGAAAACA
* *
1161207 AATGAATTTTTCAAAACTGATTTGATAGGAATTAAATGATAATATTT
1 AATGAATTTTTCAAAACTGATTTAATA-TAATTAAATGATAATATTT
1161254 AAAGAAAAGC
Statistics
Matches: 174, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
159 43 0.25
160 21 0.12
161 33 0.19
162 3 0.02
163 52 0.30
164 22 0.13
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (163 bp):
AATGAATTTTTCAAAACTGATTTAATATAATTAAATGATAATATTTGATGAATTTTAAAAATTAA
AAATCGATAAAAATCCCCACGAAAAATTTTACGAAGAAGAAAACTCCATATTTGAGAAACATAAG
GAATCTAAAAAAAATGAAAAACGAATGAAAACA
Found at i:1163748 original size:472 final size:473
Alignment explanation
Indices: 1162528--1165232 Score: 3258
Period size: 472 Copynumber: 5.7 Consensus size: 473
1162518 ACTTAAATAT
* *
1162528 ATAGGGCAAAGAAAAGATTTCCATGCAATAGAAAATCATCAATATTATTTATCCTAATGAGGAG-
1 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* *
1162592 TATGTATTTACAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAAT-CATGTTTGTCTCA
66 TATG--TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * * * *
1162656 TTTGAGGCATGAACTTATATTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTAGCGAAACTAAAG
129 TTTGAGGCATCAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * *
1162721 CACCATTATCGTGTATTCTAATGAGAAGACTATGTTTACGGTGCCTAGTCTTGAAAAGATTGCGA
194 CACCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGG
* * * ** * *
1162786 AATAGTATGATTATTTATGTTTGTCTTACATAAGAGATAAACTTTGATTCTAT-AAAAACCGGTG
259 AATAGTAAGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAA-CGGTG
* * ** *
1162850 GAAAGAAAATCATTTCTTGCGACACCAAAGCATCAATGTCATGTA-CCTTAATGGTGGGATTGTG
323 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC-TAATGAAGGGAATGTG
* * * *
1162914 TTTTTGGATCCCAATCTCGAAAAGAATGGAGGTTGTTACGAGAATCAATGCTTATCTTATTTAAG
387 TTTTTGGTTCCCAATCT-GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* *
1162979 GGATAAACTTTGGTTTTAACGAAA
451 GGATGAACTTTGATTTTAA-GAAA
* * * *
1163003 ATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAA--ATGCCAATATTACTTATCCTAACGAGGA
1 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT--CAATATCATTTATCCTAATGAGGA
* * * * * * *
1163066 GAATGTGTTTATAGTACCTAATCACAAACTGAATGAAGATCAATACCAGAGTCCATTTTTGTCTC
64 G-ATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * * * *
1163131 ATTCGAGGGATGAACTTAGACTTTACAAAAATTAGTGAAAAAAAAGCCTTTCTTGTGAAACCAAA
128 ATTTGAGGCATCAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAA
* * * *
1163196 GCACCAATATCGGGTATCTTAATGAGAAGACTATATTAATGGTGCCTAATCTTGAAAAGAATGGG
193 GCACCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGG
* * * *
1163261 GAATAGTATGAGTATTCATATTTG-CATTATTTAAGAGACAAACTTTGATTCAATCAAAAACAGT
258 GAATAGTAAGAGTATTAATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGT
* ** * *
1163325 GGAAAGAAAAGCTTTTCTTGCAATGCCAAAGCATCAATGCCATGTATCCTAATGAAGGAAATGTG
322 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * * *
1163390 TTTTTGGTACCTAATCTCTAAAAGAATGGAAATTGTTACTAGAATCGATACTT-TCTTATTTAAG
387 TTTTTGGTTCCCAATCT-GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
*
1163454 GGATGAACTTTGATATTAAGTAAA
451 GGATGAACTTTGATTTTAAG-AAA
* * *
1163478 ATAGGGCAAAGAAAAGATTTGCATGCAAAAGAAAATCATCAAAATCATTTATCTTAATGAGGAG-
1 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
1163542 TATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
66 TATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
1163607 TGAGGCA-CAAGCTTCGATTTTACAAAAATTGGT-GAAAAAAAGCCTTTCTTGCAAAACCAAAGC
131 TGAGGCATCAA-CTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
1163670 ATCAATATCGGGTATCCTAGTGAGAAAACTATATTTATGGTGCCTAATCTTGAAAAGAAAGGGGA
195 ACCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGA
* * * * * *
1163735 ATTGCAAGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCAATCAGAAATGGTGGA
260 ATAGTAAGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGA
* * * *
1163800 AAGAAAAACTTTTCTTACGACACCAAAACATCAATGTCATTTATCCTAATGAAGGGAATGTG-TT
325 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * * * *
1163864 TAGGTTCCCAATGCTGAAAATAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAAGGA
390 TTGGTTCCCAAT-CTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
1163929 TGAACTTTGATTTTAAAGAAA
454 TGAACTTTGATTTT-AAGAAA
* * * *
1163950 ATAAGGCGAAGAAAAGATTTCCATGCAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGA
1 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG-
*
1164015 ATATGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCAT
65 ATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* *
1164079 TTGAGGCA-CGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCAAAA
130 TTGAGGCATC-AACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAG
* * *
1164142 CACCAATATCGTGTATCCTATTCAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGG
194 CACCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGG
* * * * * *
1164207 ATTAGTATA-AGCATTTATGTTTTTCTTATTTAAGAGACAAACTTTGATTCAA-AAAAAACAGTG
259 AATAGTA-AGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
* * *
1164270 GAAAGAAAAGCTTTTCCTGTGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGT
323 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* * * ** * *
1164335 ATTAGGTT-CCAATCTTGAAAAGAATAGAGATTGTTACGAGAATCGATAATTGTCCTATTTGAGG
388 TTTTGGTTCCCAATC-TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
** *
1164399 GACAAACTTTGATTTTAA-AGA
452 GATGAACTTTGATTTTAAGAAA
* * * *
1164420 A-A-GGCAAAGAAAAGATTTCCATGCAAAAAAAAAATCATCAATGTCATTAATCTTAATGAGGAG
1 ATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * *
1164483 AATGTGTTTATAGTGCCTAATCATAAAATGATTGAAGATCACTA-TAAGAATCTATGTTTGTCTC
65 -ATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTC
* ** * * *
1164547 ATTTGAGGTAGAAACCTT-GACTTTACAAAAATTAGT-GAAAAAAAGTCTTTCTTGTGAAACCAA
128 ATTTGAGGCATCAA-CTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAA
* *
1164610 AGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCTTGAAAAGAAT-A
192 AGCACCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * *
1164673 GGAA-AATACA-AATATTAATGTTTGTCTTATTTAGGAGACAAACTTTGAATCAATCAAAAACGG
257 GGAATAGTA-AGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGG
* ** * * *
1164736 TGGAAAGAAGAGCTTTTCTTATGACATCAAAGCATCAATGTCATGTCTCTTAATGAAGGGAATGT
321 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * * *
1164801 GTTTTTGATTCCCAATCATAAAAAGAATGGAAATTGTTGCTG-GAATCGATGCTTGTCTTATTTA
386 GTTTTTGGTTCCCAATC-TGAAAAGAATGGAGATTGTTAC-GAGAATCGATGCTTGTCTTATTTA
* * *
1164865 AGAGATGAACTTTGGTATTAAGTAAA
449 AGGGATGAACTTTGATTTTAAG-AAA
* * * *
1164891 ATACGGCAAAGAAAAGATTTCCATGCAAATGAAAATCATTAATATTATTTATCCTAATGAGGAGA
1 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG-
* * **
1164956 ATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATTGTTACTAGAATCCATGTTTGTCTCAT
65 ATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
1165021 TTGAGGCA-CAAACTTAGATTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAACCGAAG
130 TTGAGGCATC-AACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAG
** * * * *
1165085 CATTAATATTGTGTATCCTAATGAGAAAACTATGTTTACGGTGCCTAATCTTGTAAAGAATGGGG
194 CACCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGG
* * * *
1165150 AATAGTATGAGTA-TAATTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTG
259 AATAGTAAGAGTATTAA-TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
*
1165214 GAAAAAAAAGCTTTTCTTG
323 GAAAGAAAAGCTTTTCTTG
1165233 AGAAGAATGG
Statistics
Matches: 1911, Mismatches: 274, Indels: 89
0.84 0.12 0.04
Matches are distributed among these distances:
467 41 0.02
468 96 0.05
469 148 0.08
470 111 0.06
471 51 0.03
472 522 0.27
473 357 0.19
474 60 0.03
475 185 0.10
476 328 0.17
477 12 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (473 bp):
ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
TATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
TGAGGCATCAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCA
CCAATATCGGGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAA
TAGTAAGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAA
AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
TGGTTCCCAATCTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
AACTTTGATTTTAAGAAA
Found at i:1164074 original size:158 final size:155
Alignment explanation
Indices: 1163425--1164080 Score: 382
Period size: 158 Copynumber: 4.2 Consensus size: 155
1163415 ATGGAAATTG
* ** * *
1163425 TTACTAGAATCGATACTT-TCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAAA
1 TTACTAGAATCCATGTTTGTCTTATTTAA-GGATGAACTTTGATTTTAAAG-AAAAT--GGCGAA
* * *
1163488 GAAAAGATTTGCATGCAAAA-GAAAATCATCAAAATCATTTATCTTAATGAGGAG--TATGTTTA
62 GAAAAGATTT-CATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTA
1163550 TAGTGCCTAATC-ACAAAATGAATGAAGATCA
126 TAGTGCCTAATCTAC-AAATGAATGAAGA-CA
* * * * * * *
1163581 TTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CAAGCTTCGATTTTACAA-AAATTGGTGAAA
1 TTACTAGAATCCATGTTTGTCTTATTTAAGG-ATGAA-CTTTGATTTTA-AAGAAAATGGCGAAG
* * * * *** * * * *
1163644 AAAAGCCTTTCTTGCAAAAC-CAAAGCATCAATATCGGGTATCCTAGTGA-GAAAACTATATTTA
63 AAAAG-ATTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAA-TATGTTTA
* ** * * **
1163707 TGGTGCCTAATCTTGAAAAGAAAGGGGA-A
126 TAGTGCCTAATCTACAAATGAATGAAGACA
* * * * ** * *
1163736 TTGCAAGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGA-TTCAATCAG-AAATGGTGG
1 TTACTAGA--ATCCATGTTTGTCTTATTTAAG-GATGAACTTTGATTTTAA--AGAAAATGG-CG
* * * * * * *
1163799 AAAGAAAA-ACTTTTCTTACGACACCAAAA-CATCAATGTCATTTATCCTAATGAAGG-GAATGT
60 -AAGAAAAGA--TTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAATAT
* * * *
1163861 GTTTA-GGTTCCCAATGCTGA-AAAT-AATGGAGACTA
121 GTTTATAGTGCCTAAT-CT-ACAAATGAATGAAGAC-A
* * *
1163896 TTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAAGAAAATAAGGCGAAG
1 TTACTAGAATCCATGTTTGTCTTATTT-AAGGATGAACTTTGATTTTAAAGAAAAT--GGCGAAG
1163961 AAAAGATTTCCATGC-AAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTAT
63 AAAAGATTT-CATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTAT
1164025 AGTGCCTAATC-ACAAATGAATGAAGATCA
127 AGTGCCTAATCTACAAATGAATGAAGA-CA
* *
1164054 TTACTAGAATCCATTTTTGTCTCATTT
1 TTACTAGAATCCATGTTTGTCTTATTT
1164081 GAGGCACGAA
Statistics
Matches: 370, Mismatches: 88, Indels: 82
0.69 0.16 0.15
Matches are distributed among these distances:
154 2 0.01
155 46 0.12
156 26 0.07
157 98 0.26
158 119 0.32
159 63 0.17
160 15 0.04
161 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (155 bp):
TTACTAGAATCCATGTTTGTCTTATTTAAGGATGAACTTTGATTTTAAAGAAAATGGCGAAGAAA
AGATTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTG
CCTAATCTACAAATGAATGAAGACA
Found at i:1164092 original size:158 final size:155
Alignment explanation
Indices: 1163425--1164550 Score: 384
Period size: 157 Copynumber: 7.2 Consensus size: 155
1163415 ATGGAAATTG
* ** * * * *
1163425 TTACTAGAATCGATACTT-TCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAAA
1 TTACTAGAATCCATGTTTGTCTCATTTAA-GGACGAACTTTGATTTTAAAG-AAAAT--GGCGAA
* * *
1163488 GAAAAGATTTGCATGCAAAA-GAAAATCATCAAAATCATTTATCTTAATGAGGAG--TATGTTTA
62 GAAAAGATTT-CATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTA
1163550 TAGTGCCTAATC-ACAAAATGAATGAAGATCA
126 TAGTGCCTAATCTAC-AAATGAATGAAGA-CA
* * * * *
1163581 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AAGCTTCGATTTTACAA-AAATTGGTGAAA
1 TTACTAGAATCCATGTTTGTCTCATTTAAGG-ACGAA-CTTTGATTTTA-AAGAAAATGGCGAAG
* * * * *** * * * *
1163644 AAAAGCCTTTCTTGCAAAAC-CAAAGCATCAATATCGGGTATCCTAGTGA-GAAAACTATATTTA
63 AAAAG-ATTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAA-TATGTTTA
* ** * * **
1163707 TGGTGCCTAATCTTGAAAAGAAAGGGGA-A
126 TAGTGCCTAATCTACAAATGAATGAAGACA
* * * * * * * *
1163736 TTGCAAGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGA-TTCAATCAG-AAATGGTGG
1 TTACTAGA--ATCCATGTTTGTCTCATTTAAG-GACGAACTTTGATTTTAA--AGAAAATGG-CG
* * * * * * *
1163799 AAAGAAAA-ACTTTTCTTACGACACCAAAA-CATCAATGTCATTTATCCTAATGAAGG-GAATGT
60 -AAGAAAAGA--TTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAATAT
* * * *
1163861 GTTTA-GGTTCCCAATGCTGA-AAAT-AATGGAGACTA
121 GTTTATAGTGCCTAAT-CT-ACAAATGAATGAAGAC-A
* * * * *
1163896 TTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAAGAAAATAAGGCGAAG
1 TTACTAGAATCCATGTTTGTCTCATTT-AAGGACGAACTTTGATTTTAAAGAAAAT--GGCGAAG
1163961 AAAAGATTTCCATGC-AAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTAT
63 AAAAGATTT-CATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTAT
1164025 AGTGCCTAATC-ACAAATGAATGAAGATCA
127 AGTGCCTAATCTACAAATGAATGAAGA-CA
* * * * * *
1164054 TTACTAGAATCCATTTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA-AAATTGGTGGGAA
1 TTACTAGAATCCATGTTTGTCTCATTTAAGG-ACGAACTTTGATTTTA-AAGAAAAT-G-GCGAA
* * * * * * * * * *
1164118 -AAAAGCCTTTCTTGC-GAACCAAAA-CACCAATATCGTGTATCCTATTCA-GAAAACTATGTTT
62 GAAAAG-ATTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAA-TATGTTT
* ** * ** *
1164179 ATGGTGCCTAATCTTGAAAAGAATGGGGATTA
125 ATAGTGCCTAATCTACAAATGAATGAAGA-CA
* * ** * * * ** * *
1164211 GTA-TAAGCATTTATGTTTTTCTTATTTAAGAGACAAACTTTGATTCAAAAAAAACAGTGG-AAA
1 TTACT-AGAATCCATGTTTGTCTCATTTAAG-GACGAACTTTGATTTTAAAGAAA-A-TGGCGAA
* * ** * * * * * * *
1164274 GAAAAGCTTTTCCTGTGACAC-CAAAGCTTCAATGTCATGTATCCTAATGAAGG-GAATGTGTAT
62 GAAAAG-ATTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAAT-AAGGAGAATATGT-T
* * ** * **
1164337 TA-GGTTCC-AATCTTGAAAAGAAT-AGAGATTG
124 TATAGTGCCTAATCTACAAATGAATGA-AGA-CA
* * ** * * *
1164368 TTACGAGAATCGATAATTGTC-CTATTTGAGGGACAAACTTTGATTTTAAAG-AAA-GGCAAAGA
1 TTACTAGAATCCATGTTTGTCTC-ATTT-AAGGACGAACTTTGATTTTAAAGAAAATGGCGAAGA
** * * * * *
1164430 AAAGATTTCCATGCAAAAAAAAAATCATCAATGTCATTAATCTTAATGAGGAGAATGTGTTTATA
64 AAAGATTT-CATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATA
*
1164495 GTGCCTAATCATA-AAATGATTGAAGATCA
128 GTGCCTAATC-TACAAATGAATGAAGA-CA
* *
1164524 CTA-TAAGAATCTATGTTTGTCTCATTT
1 TTACT-AGAATCCATGTTTGTCTCATTT
1164551 GAGGTAGAAA
Statistics
Matches: 715, Mismatches: 182, Indels: 146
0.69 0.17 0.14
Matches are distributed among these distances:
153 5 0.01
154 22 0.03
155 84 0.12
156 104 0.15
157 236 0.33
158 175 0.24
159 72 0.10
160 16 0.02
161 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (155 bp):
TTACTAGAATCCATGTTTGTCTCATTTAAGGACGAACTTTGATTTTAAAGAAAATGGCGAAGAAA
AGATTTCATGCAAAACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTG
CCTAATCTACAAATGAATGAAGACA
Found at i:1165890 original size:159 final size:156
Alignment explanation
Indices: 1165261--1166660 Score: 589
Period size: 159 Copynumber: 8.8 Consensus size: 156
1165251 TCGAGAATTG
* * * * *
1165261 ATGCTTGCCTTATTTAAGAGATGGACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTTA
1 ATGCTTGTCTTATTTGAG-GACGAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCA
* * * * * * * * * *
1165326 TACAAAAGAAAATCATTAACATTATTTACCCTAATAAGGAGAATGTGCTTATAGTGCCTAATCAC
63 TGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
*
1165391 AAAATGAAAGAAGATCATTACTAGAATCC
128 AAAATGAATGAAGATCATTACTAGAATCC
* * * * * ** *
1165420 ATGTTTGTCTTATTTGAGGTACGAACTTAGAGTTTACAAAAATTGATG--AA-AAAAGCCTTTCT
1 ATGCTTGTCTTATTTGAGG-ACGAACTTTGATTTTA-AAAAA-TAAGGCAAAGAAAAGATTTTCA
* * * ** *
1165482 TGCGAAACCAAAGCACCAATATCGA-GTATCCTAATGACAAGACAT-TG-TTATGGTGCCTAATC
63 TGCAAAACAAAAGCATCAATATC-ATGTATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAATC
* * * * * *
1165544 TAGAATAA-AATATGGA-AT-AGTA-TGAGTATTC
126 -ACAA-AATGA-ATGAAGATCATTACT-AGAATCC
* * * * *
1165575 ATGTTTGTCTTATTTGAGAGACAAACTTTGA-TTCAATAAAA-AACGGTGGAAAGAAAGGATTTT
1 ATGCTTGTCTTATTTGAG-GACGAACTTTGATTTTAA-AAAATAA--G-GCAAAGAAAAGATTTT
* * * * * * *
1165638 CTTGTAACACCAAAGCTTCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTAGAT-CCTAA
61 CATGCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAA
**** * * ** * *
1165701 TCTTGTGAA-GAAAGCAGATTGTTACGAGAATCA
124 TC-ACAAAATGAATGAAGATCATTACTAGAATCC
* * *
1165734 ATGCTTGTCATATTTAAGGCACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA
1 ATGCTTGTCTTATTTGAGG-ACGAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCA
* * * *
1165799 TACAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
63 TGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
*
1165864 AAAATGAATGAAGATAATTACTAGAATCC
128 AAAATGAATGAAGATCATTACTAGAATCC
* * * * * ** * **
1165893 ATGTTTATCTCATTTGAGAGATGAACTTAGATTTTACAAAAACTGGTGGGAAA-AAAAGCCTTTC
1 ATGCTTGTCTTATTTGAG-GACGAACTTTGATTTTA-AAAAA-T-AAGGCAAAGAAAAGATTTTC
* * * * * * * * *
1165957 TTGCGAAATC-AAAGCACCAATATCAGGTATCCTAATAAAGG-GAATGTGTTTTTGGTTCCCAAT
62 ATGC-AAAACAAAAGCATCAATATCATGTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAAT
* * ** *
1166020 CTCTAAATGAATGGAA-ATTGTTACTAGAATCG
125 CACAAAATGAAT-GAAGATCATTACTAGAATCC
* * * * * *
1166052 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAAAGTACGGCAAAGAAAAGATTTGCA
1 ATGCTTGTCTTATTTGA-GGACGAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCA
* * * * *
1166117 TGCGAAAGAAAATCATCAATATCAAT-TATCCTAATGAGGAGTATGCGTTTATAGTGCCTAATCA
63 TGCAAAACAAAAGCATCAATATC-ATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
*
1166181 CAAAATAAATGAAGATCATTACTAGAATCC
127 CAAAATGAATGAAGATCATTACTAGAATCC
* * * * * ** * ** *
1166211 ATGCTGGTCTTATTTCAAGCACGAACATAGATTTTACAAAAATTGGTGGAAAG--AAGCCTTTCT
1 ATGCTTGTCTTATTT-GAGGACGAACTTTGATTTTA-AAAAATAAG-GCAAAGAAAAGATTTTCA
* * * *** * * * * * * * *
1166274 TGCGAACCCAAAGTGCCAATATC-GGTAACCTAATGAGAAGACTATATTTATGGGGCCTAATCAT
63 TGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-
* ** * *
1166338 GAACAA--AATGGGGAAT-AGTGTA--AGTATTC
127 CAA-AATGAATGAAG-ATCA-T-TACTAGAATCC
* * * * * *
1166367 ATGTTTGTCTTATTTAAGAGAC-AAATTATGA-TTCAATCAAAA-ACAGTGGAAAGAAAAGCTTT
1 ATGCTTGTCTTATTTGAG-GACGAACTT-TGATTTTAA--AAAATA-AG-GCAAAGAAAAGATTT
* * * * * * * * * *
1166429 TCTTGCGACACCAAAGCATTAATGTCATGTATCCTAATGAAGGA-AATGTGTTTTTGGTTCCCAA
60 TCATGCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAA
* * ** *
1166493 TCTCTAAAA-GAATGAAAATTGTTACTAGAATCG
124 TCAC-AAAATGAATGAAGATCATTACTAGAATCC
* * * * * *
1166526 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAATAGGGCAAAGAAAAGAATTGCA
1 ATGCTTGTCTTATTTGA-GGACGAACTTTGAT-TTTA-AAAAATAAGGCAAAGAAAAGATTTTCA
* * * * * * * *
1166591 TGCGAAAGAAAATCATCAATATCATTTATCTTAATGAGTAGTATGTGTTTATGGTGCCTAATCAC
63 TGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
1166656 AAAAT
128 AAAAT
1166661 TGGTGGAAAA
Statistics
Matches: 909, Mismatches: 254, Indels: 156
0.69 0.19 0.12
Matches are distributed among these distances:
152 1 0.00
153 1 0.00
154 9 0.01
155 59 0.06
156 112 0.12
157 47 0.05
158 122 0.13
159 504 0.55
160 44 0.05
161 8 0.01
162 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (156 bp):
ATGCTTGTCTTATTTGAGGACGAACTTTGATTTTAAAAAATAAGGCAAAGAAAAGATTTTCATGC
AAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCC
Found at i:1166111 original size:318 final size:316
Alignment explanation
Indices: 1165646--1166307 Score: 853
Period size: 318 Copynumber: 2.1 Consensus size: 316
1165636 TTCTTGTAAC
** * * * * * *
1165646 ACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTAGATCCTAATCTTGTGAAG
1 ACCAAAGCACCAATATCAGGTATCCTAATAAAGGGAATGTGTTTTTAGATCCCAATCTTCTAAAG
* *
1165711 AAAGCAGATTGTTACGAGAATCAATGCTTGTCATATTTAAGGCACAAACTTTGATTTTAAGGAAA
66 AAAGCAAATTGTTACGAGAATCAATGCTTGTCATATTTAAGGCACAAACTTTGATATTAAGGAAA
* *
1165776 ATAAGGCAAAGAAAAGATTTTCATACAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
131 ATAAGGCAAAGAAAAGATTTGCATACAAAAAAAAATCATCAATATCAATTATCCTAATGAGGAGA
* * * *
1165841 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCCATGTTTATCTCAT
196 ATGCGTTTATAGTGCCTAATCACAAAATAAATGAAGATAATTACTAGAATCCATGCTGATCTCAT
* * *
1165906 TTGAGAG-ATGAACTTAGATTTTACAAAAACTGGTGGGAAAAAAAGCCTTTCTTGCGAA
261 TTCA-AGCACGAACATAGATTTTACAAAAACTGGT-GG-AAAAAAGCCTTTCTTGCGAA
* * *
1165964 ATCAAAGCACCAATATCAGGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATC-TCTAAAT
1 ACCAAAGCACCAATATCAGGTATCCTAATAAAGGGAATGTGTTTTTAGATCCCAATCTTCTAAA-
* * * * * * ** *
1166028 GAATGGAAATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGTAA
65 GAAAGCAAATTGTTACGAGAATCAATGCTTGTCATATTTAAGGCACAAACTTTGATATTAAGGAA
* * * * *
1166093 AGTACGGCAAAGAAAAGATTTGCATGCGAAAGAAAATCATCAATATCAATTATCCTAATGAGGAG
130 AATAAGGCAAAGAAAAGATTTGCATACAAAAAAAAATCATCAATATCAATTATCCTAATGAGGAG
* * * *
1166158 TATGCGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGCTGGTCTTA
195 AATGCGTTTATAGTGCCTAATCACAAAATAAATGAAGATAATTACTAGAATCCATGCTGATCTCA
* *
1166223 TTTCAAGCACGAACATAGATTTTACAAAAATTGGTGGAAAGAAGCCTTTCTTGCGAA
260 TTTCAAGCACGAACATAGATTTTACAAAAACTGGTGGAAAAAAGCCTTTCTTGCGAA
* ** *
1166280 CCCAAAGTGCCAATATC-GGTAACCTAAT
1 ACCAAAGCACCAATATCAGGTATCCTAAT
1166308 GAGAAGACTA
Statistics
Matches: 295, Mismatches: 47, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
315 10 0.03
316 32 0.11
317 8 0.03
318 245 0.83
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (316 bp):
ACCAAAGCACCAATATCAGGTATCCTAATAAAGGGAATGTGTTTTTAGATCCCAATCTTCTAAAG
AAAGCAAATTGTTACGAGAATCAATGCTTGTCATATTTAAGGCACAAACTTTGATATTAAGGAAA
ATAAGGCAAAGAAAAGATTTGCATACAAAAAAAAATCATCAATATCAATTATCCTAATGAGGAGA
ATGCGTTTATAGTGCCTAATCACAAAATAAATGAAGATAATTACTAGAATCCATGCTGATCTCAT
TTCAAGCACGAACATAGATTTTACAAAAACTGGTGGAAAAAAGCCTTTCTTGCGAA
Found at i:1166878 original size:250 final size:248
Alignment explanation
Indices: 1166457--1166907 Score: 749
Period size: 250 Copynumber: 1.8 Consensus size: 248
1166447 TTAATGTCAT
1166457 GTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTTACTAGA
1 GTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTTACTAGA
* *
1166522 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAATAGGGCAAAGAAAAGAAT
66 ATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAAT
* * * * *
1166587 TGCATGCGAAAGAAAATCATCAATATCATTTATCTTAATGAGTAGTATGTGTTTATGGTGCCTAA
131 TGCATGCAAAAGAAAATCATCAATATCAATTATCCTAATGAGGAG--TGTGTTTATAGTGCCTAA
1166652 TCACAAAATTGGTGGAAAAAAAGCCTTTCTTGTGAAATCAAAGCACCAATATTGG
194 TCACAAAATTGGTGGAAAAAAAGCCTTTCTTGTGAAATCAAAGCACCAATATTGG
* * * *
1166707 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTCTAAATGAATGGAAATTGTTACTGGA
1 GTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTTACTAGA
* * *
1166772 ATCGATGCTTGTCTTATTTAAAGGATGAGCTTTGATATTAAGTAAAGTAGGGCAAAGAAAAGATT
66 ATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAAT
1166837 TGCATGCAAAAGAAAATCATCAATATCAATTATCCTAATGAGGAGTGTGTTTATAGTGCCTAATC
131 TGCATGCAAAAGAAAATCATCAATATCAATTATCCTAATGAGGAGTGTGTTTATAGTGCCTAATC
*
1166902 ATAAAA
196 ACAAAA
1166908 ATGAATGAAG
Statistics
Matches: 186, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
248 24 0.13
250 162 0.87
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (248 bp):
GTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTTACTAGA
ATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGAAT
TGCATGCAAAAGAAAATCATCAATATCAATTATCCTAATGAGGAGTGTGTTTATAGTGCCTAATC
ACAAAATTGGTGGAAAAAAAGCCTTTCTTGTGAAATCAAAGCACCAATATTGG
Found at i:1167327 original size:724 final size:724
Alignment explanation
Indices: 1165931--1167367 Score: 2403
Period size: 724 Copynumber: 2.0 Consensus size: 724
1165921 AGATTTTACA
1165931 AAAACTGGTGGGAAAAAAAGCCTTTCTTGCGAAATCAAAGCACCAATATCAGGTATCCTAATAAA
1 AAAACTGGTGGGAAAAAAAGCCTTTCTTGCGAAATCAAAGCACCAATATCAGGTATCCTAATAAA
1165996 GGGAATGTGTTTTTGGTTCCCAATCTCTAAATGAATGGAAATTGTTACTAGAATCGATGCTTGTC
66 GGGAATGTGTTTTTGGTTCCCAATCTCTAAATGAATGGAAATTGTTACTAGAATCGATGCTTGTC
* *
1166061 TTATTTAAGGGATGAACTTTGATATTAAGTAAAGTACGGCAAAGAAAAGATTTGCATGCGAAAGA
131 TTATTTAAAGGATGAACTTTGATATTAAGTAAAGTACGGCAAAGAAAAGATTTGCATGCAAAAGA
*
1166126 AAATCATCAATATCAATTATCCTAATGAGGAGTATGCGTTTATAGTGCCTAATCACAAAATAAAT
196 AAATCATCAATATCAATTATCCTAATGAGGAG-ATGCGTTTATAGTGCCTAATCAAAAAATAAAT
* *
1166191 GAAGATCATTACTAGAATCCATGCTGGTCTTATTTCAAGCACGAACATAGATTTTACAAAAATTG
260 GAAGATCATTACTAGAATCCATACTGGTCTCATTTCAAGCACGAACATAGATTTTACAAAAATTG
*
1166256 GTGGAAAGAAGCCTTTCTTGCGAACCCAAAGTGCCAATATCGGTAACCTAATGAGAAGACTATAT
325 GTGGAAAAAAGCCTTTCTTGCGAACCCAAAGTGCCAATATCGGTAACCTAATGAGAAGACTATAT
* * *
1166321 TTATGGGGCCTAATCATGAACAAAATGGGGAATAGTGTAAGTATTCATGTTTGTCTTATTTAAGA
390 TTATAGGGCCTAATCATGAACAAAATGAGGAATAGTGTAAGTATTCATGTTTGTCATATTTAAGA
* * *
1166386 GACAAATTATGATTCAATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATTAA
455 GACAAACTATGATTCAATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
*
1166451 TGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTT
520 TGCCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTT
1166516 ACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAATAGGGCAAAGAA
585 ACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAATAGGGCAAAGAA
* * * *
1166581 AAGAATTGCATGCGAAAGAAAATCATCAATATCATTTATCTTAATGAGTAGTATGTGTTTATGGT
650 AAGAATTGCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGTATGTGTTTATGGT
1166646 GCCTAATCAC
715 GCCTAATCAC
* * ** *
1166656 AAAATTGGT-GGAAAAAAAGCCTTTCTTGTGAAATCAAAGCACCAATATTGGGTATCCTAATGAA
1 AAAACTGGTGGGAAAAAAAGCCTTTCTTGCGAAATCAAAGCACCAATATCAGGTATCCTAATAAA
*
1166720 GGGAATGTGTTTTTGGTTCCCAATCTCTAAATGAATGGAAATTGTTACTGGAATCGATGCTTGTC
66 GGGAATGTGTTTTTGGTTCCCAATCTCTAAATGAATGGAAATTGTTACTAGAATCGATGCTTGTC
* *
1166785 TTATTTAAAGGATGAGCTTTGATATTAAGTAAAGTAGGGCAAAGAAAAGATTTGCATGCAAAAGA
131 TTATTTAAAGGATGAACTTTGATATTAAGTAAAGTACGGCAAAGAAAAGATTTGCATGCAAAAGA
* *
1166850 AAATCATCAATATCAATTATCCTAATGAGGAG-TGTGTTTATAGTGCCTAATCATAAAAATGAAT
196 AAATCATCAATATCAATTATCCTAATGAGGAGATGCGTTTATAGTGCCTAATCA-AAAAATAAAT
* * * * *
1166914 GAAGATCATTACTAGAATTCATATTTGTCTCATTTGAGGCACGAACATAGATTTTACAAAAATTG
260 GAAGATCATTACTAGAATCCATACTGGTCTCATTTCAAGCACGAACATAGATTTTACAAAAATTG
* *
1166979 GTGGAAAAAAGTCTTTCTTGCGAACCCAAAGTGCCAATATCAGGTATCCTAATGAGAAGACTATA
325 GTGGAAAAAAGCCTTTCTTGCGAACCCAAAGTGCCAATATC-GGTAACCTAATGAGAAGACTATA
* * *
1167044 TTTATAGTGCCTAATCATGAACATAATGAGGAATAGTGTTAGTATTCATGTTTGTCATATTTAAG
389 TTTATAGGGCCTAATCATGAACAAAATGAGGAATAGTGTAAGTATTCATGTTTGTCATATTTAAG
* * *
1167109 AGACAAACTATGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGACACCTAAGCATCA
454 AGACAAACTATGATTCAATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * *
1167174 ATGCCATGTATCCTGATGAAGGGATTGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGT
519 ATGCCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGT
1167239 TACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAAT-GAGGCAAAG
584 TACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAATAG-GGCAAAG
* * *
1167303 AAAAGATTTGCATGCAAAAGAAAATCATTAATATTATTTATCCTAATAAGGAGTATGTGTTTATG
648 AAAAGAATTGCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGTATGTGTTTATG
1167368 TGTTTATAGT
Statistics
Matches: 663, Mismatches: 46, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
722 20 0.03
723 106 0.16
724 529 0.80
725 8 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (724 bp):
AAAACTGGTGGGAAAAAAAGCCTTTCTTGCGAAATCAAAGCACCAATATCAGGTATCCTAATAAA
GGGAATGTGTTTTTGGTTCCCAATCTCTAAATGAATGGAAATTGTTACTAGAATCGATGCTTGTC
TTATTTAAAGGATGAACTTTGATATTAAGTAAAGTACGGCAAAGAAAAGATTTGCATGCAAAAGA
AAATCATCAATATCAATTATCCTAATGAGGAGATGCGTTTATAGTGCCTAATCAAAAAATAAATG
AAGATCATTACTAGAATCCATACTGGTCTCATTTCAAGCACGAACATAGATTTTACAAAAATTGG
TGGAAAAAAGCCTTTCTTGCGAACCCAAAGTGCCAATATCGGTAACCTAATGAGAAGACTATATT
TATAGGGCCTAATCATGAACAAAATGAGGAATAGTGTAAGTATTCATGTTTGTCATATTTAAGAG
ACAAACTATGATTCAATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
GCCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTTA
CTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTTAGTAAAATAGGGCAAAGAAA
AGAATTGCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGTATGTGTTTATGGTG
CCTAATCAC
Found at i:1168127 original size:477 final size:474
Alignment explanation
Indices: 1166662--1168209 Score: 1964
Period size: 483 Copynumber: 3.2 Consensus size: 474
1166652 TCACAAAATT
* * * * * *** *
1166662 GGTGGAAA-AAAAGCCTTTCTTGTGAAATCAAAGCACCAATATTGGGTATCCTAATGAAGGGAAT
1 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATT
*
1166726 GTGTTTTTGGTTCCCAATCTCT-AAATGAATGGAAATTGTTACTGGAATCGATGCTTGTCTTATT
66 GTGTTTTTGGTTCCCAATCTCTAAAAT-AATGGAAATTGTTACTAGAATCGATGCTTGTCTTATT
* * *
1166790 TAAAGGATGAGCTTTGATATTAAGTAAAGTAGGGCAAAGAAAAGATTTGCATGCAAAAGAAAATC
130 TAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTGCATGCAAAAGAAAATC
* *
1166855 ATCAATATCAATTATCCTAATGAGGAG--TGTGTTTATAGTGCCTAATCATA-AAAATGAATGAA
195 ATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT-A-ACAAAATGAATGAA
* *
1166917 GATCATTACTAGAATTCATATTTGTCTCATTTGAGGCACGAACATAGATTTTACAAAAATTGGT-
258 GATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCAC-AACTTAGATTTTACAAAAATTGGTG
* * **
1166981 GGAAAAAAGTCTTTCTTGCGAACCCAAAGTGCCAATATCAGGTATCCTAATGAGAAGACTATATT
322 GGAAAAAAGCCTTTCTTGCAAACCCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATATT
* * * * *
1167046 TATAGTGCCTAATCATGAACATAATGAGGAATAGTGTTAGTATTCATGTTTGTCATATTTAAGAG
387 TATAGTGCCTAATCATGAAAAGAATG-GGAATAGTGTGAGTATTCATGTTTATCTTATTTAAGAG
*
1167111 ACAAACTATGATTCAATCAAAAAC
451 ACAAACTTTGATTCAATCAAAAAC
* * * *
1167135 GGTGGAAAGAAAAGCTTTTCTTATGACACCTAAGCATCAATGCCATGTATCCTGATGAAGGGATT
1 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATT
* *
1167200 GTGTTTTTGGTTCCCAATCTCTAAAAGAATGAAAATTGTTACTAGAATCGATGCTTGTCTTATTT
66 GTGTTTTTGGTTCCCAATCTCTAAAATAATGGAAATTGTTACTAGAATCGATGCTTGTCTTATTT
*
1167265 AAGGGATGAACTTTGATATTTAGTAAAAT-GAGGCAAAGAAAAGATTTGCATGCAAAAGAAAATC
131 AAGGGATGAACTTTGATATTAAGTAAAATAG-GGCAAAGAAAAGATTTGCATGCAAAAGAAAATC
* * *
1167329 ATTAATATTATTTATCCTAATAAGGAGTATGTGTTTATGTGTTTATAGTGCCTAATCACAAAATG
195 ATCAATATTATTTATCCTAATGAGGAG-A-------ATGTGTTTATAGTGCCTAATAACAAAATG
* * *
1167394 AATGAAGACCATTACTAGAATTGATGTTTGTCTCATTTGAGGCACGACTTAGATTTTACAAAAAT
252 AATGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACAACTTAGATTTTACAAAAAT
* * * *
1167459 TGGTGGAAAAAAAGCCTTTCTTGCAAACCCAAAGCACCAATTTCGGGTATCCTAAAGAGAAGACT
317 TGGTGGGAAAAAAGCCTTTCTTGCAAACCCAAAGCACCAATATCAGGTATCCTAATGAGAAGACT
* * * *
1167524 ATATTTTTGGTGCCTAATCATGAAAAGAATGGGGAATAGTGTGAGTATTCATGCTTACCTTATTT
382 ATATTTATAGTGCCTAATCATGAAAAGAAT-GGGAATAGTGTGAGTATTCATGTTTATCTTATTT
*
1167589 AAGAGACAAGCTTTGATTCAATCAAAAAC
446 AAGAGACAAACTTTGATTCAATCAAAAAC
* * * * * *
1167618 AGTGGAAACAAAAGCTATTCCTGTGGCACCAAAGCATCAATGTCATGTATCCTAATGAAAGGATT
1 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATT
* * *
1167683 GTGTTTTTAGTTCCCAATCACTAAAATAATGGAAATTGTTTCTAGAATCGATGCTTGTCTTATTT
66 GTGTTTTTGGTTCCCAATCTCTAAAATAATGGAAATTGTTACTAGAATCGATGCTTGTCTTATTT
* * * *
1167748 GAGGGATGAACTTTGATATTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAAATC
131 AAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTGCATGCAAAA-GAAAATC
* *
1167813 ATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAATAAATAAAGA
195 ATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGA
* *
1167878 TCATTACTAG-ATTCCATGTTTGTCTTATTTGAGGCACAAACTTAGATTTTACAAAAATTAGTGG
260 TCATTACTAGAATT-CATGTTTGTCTCATTTGAGGCAC-AACTTAGATTTTACAAAAATTGGTGG
* * * * * * * * *
1167942 GAAAAAGGCCTTTCTTACAAAACTAAAGCACTAATACCATGTATCCTAATGAGAAGACTATGTTC
323 GAAAAAAGCCTTTCTTGCAAACCCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATATTT
* * * * **
1168007 ACAGTGCCTAATCTTGAAAAGAATAGGGAATAGTATGAGTATTCATATTTATCTTATTTGGGAGA
388 ATAGTGCCTAATCATGAAAAGAAT-GGGAATAGTGTGAGTATTCATGTTTATCTTATTTAAGAGA
**
1168072 CAAACTTTGATTTTATCAAAAAC
452 CAAACTTTGATTCAATCAAAAAC
* * * * * * *
1168095 GGTAGAAAGTAAAGTTTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAATGTAGGGAAT
1 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATT
** * * **
1168160 GCATTTTTGGATCCCAGTCT-TCAAAATGAAT-GAAGATCATTACTAGAATC
66 GTGTTTTTGGTTCCCAATCTCT-AAAAT-AATGGAA-ATTGTTACTAGAATC
1168210 CATGTTTATC
Statistics
Matches: 924, Mismatches: 128, Indels: 41
0.85 0.12 0.04
Matches are distributed among these distances:
473 9 0.01
474 182 0.20
475 6 0.01
476 65 0.07
477 224 0.24
478 15 0.02
482 23 0.02
483 348 0.38
484 52 0.06
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATT
GTGTTTTTGGTTCCCAATCTCTAAAATAATGGAAATTGTTACTAGAATCGATGCTTGTCTTATTT
AAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTGCATGCAAAAGAAAATCA
TCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGAT
CATTACTAGAATTCATGTTTGTCTCATTTGAGGCACAACTTAGATTTTACAAAAATTGGTGGGAA
AAAAGCCTTTCTTGCAAACCCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATATTTATA
GTGCCTAATCATGAAAAGAATGGGAATAGTGTGAGTATTCATGTTTATCTTATTTAAGAGACAAA
CTTTGATTCAATCAAAAAC
Found at i:1168322 original size:317 final size:318
Alignment explanation
Indices: 1167863--1168477 Score: 865
Period size: 317 Copynumber: 1.9 Consensus size: 318
1167853 TGCCTAATAA
* * *
1167863 CAAAATAAATAAAGATCATTACTAGATTCCATGTTTGTCTTATTTGAGGCACAAACTTAGATTTT
1 CAAAATAAATAAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGATTTT
* * * * * * *
1167928 ACAAAAATTAGTGGGAAAAAGGCCTTTCTTACAAAACTAAAGCACTAATACCATGTATCCTAATG
66 ACAAAAATTAGTCGAAAAAAAGCCTTTCTTACAAAACCAAAGCACCAATACCAGGCATCCTAATG
*
1167993 AGAAGACTATGTTCACAGTGCCTAATCTTGAAAAGAATAGGGAATAGTATGAGTATTCATATTTA
131 AGAAGACTATGTTCACAGTGCCTAATCTTGAAAAAAATAGGGAATAGTATGAGTATTCATATTTA
* * * *
1168058 TCTTATTT-GGGAGACAAACTTTGATTTTATCAAAAACGGTAGAAAGTAAAGTTTTTATTGCGAC
196 TCTT-TTTCAGGAGACAAACTTTGATTTTATCAAAAACGGTAGAAAGAAAAGCTTTTATTACGAC
*
1168122 ACCAAAGCATCAATGTCATGTATCCTAATGTAGGGAATGCATTTTTGGATCCCAGTCTT
260 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAGTCTT
* * **
1168181 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGG-TGAAACTTAGATTTT
1 CAAAATAAATAAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGATTTT
* * * *** *
1168245 ACAAATATTGGTCTAAAAAAAGCCTTTCTTGTGAAACCAAAGCACCAATATCAGGCATCCTAATG
66 ACAAAAATTAGTCGAAAAAAAGCCTTTCTTACAAAACCAAAGCACCAATACCAGGCATCCTAATG
* * ** * * *
1168310 AGAAGTCTATGTTTATGGTGCCTAATCTTGAAAAAAATGGGGATTAGTATGAGTATTCATATTTG
131 AGAAGACTATGTTCACAGTGCCTAATCTTGAAAAAAATAGGGAATAGTATGAGTATTCATATTTA
* *
1168375 TCTTTTTCAGGAGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACA
196 TCTTTTTCAGGAGACAAACTTTGATTTTATCAAAAACGGTAGAAAGAAAAGCTTTTATTACGACA
* *
1168440 CCAAGGCATTAATGTCATGTATCCTAATGAAGGGAATG
261 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
1168478 TGTTTTACAT
Statistics
Matches: 258, Mismatches: 38, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
316 3 0.01
317 211 0.82
318 44 0.17
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (318 bp):
CAAAATAAATAAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGATTTT
ACAAAAATTAGTCGAAAAAAAGCCTTTCTTACAAAACCAAAGCACCAATACCAGGCATCCTAATG
AGAAGACTATGTTCACAGTGCCTAATCTTGAAAAAAATAGGGAATAGTATGAGTATTCATATTTA
TCTTTTTCAGGAGACAAACTTTGATTTTATCAAAAACGGTAGAAAGAAAAGCTTTTATTACGACA
CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAGTCTT
Found at i:1169351 original size:354 final size:355
Alignment explanation
Indices: 1168697--1169393 Score: 976
Period size: 354 Copynumber: 2.0 Consensus size: 355
1168687 TAGATTTTAC
* *
1168697 AAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAAACAAAGCACCAATACCATGTATCCTAATGAG
1 AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAACAAAGCACCAATACCAGGTATCCTAATGAG
* *
1168762 AAGACTATGTTTACGGTGCCTAATCTTGAAAATAATGGGGAATAGTATAAGTATTCATGTTTGTC
66 AAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATAAGTATTCATGTTTATC
* * * * *
1168827 TTATTTGAGAGACAAACTTTTATTTTATCAAAAAATAGTGAAAAGAAAAGCTTTTCTTGTGACAC
131 TTATTTAAAAGACAAACTTTGATTCTATCAAAAAATAGTGAAAAGAAAAGCTTTTCTTGCGACAC
** * * ** *
1168892 CAAAGCATCAATGTTGTGTATCCTAGTGAAGGGAATTTGTTTTTGGATCCCAATCTTGAAAAGAT
196 CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTTGAAAAGAA
* ** * *
1168957 TGGACATTGTTATGAGAATCGATGCTTGTCTTACTTAAGGGATGAACTTTGA-TTTATGGAAAAT
261 TGGACATTGCTACAAGAATCGATGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAGAAAAAT
1169021 AAGGCAAAGAAAAGATTTCCTTGCACAAAAG
326 -AGGCAAAGAAAAGATTTCCTTGCACAAAAG
* * *
1169052 AAAAATTGGT-GGACAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGA
1 AAAAATTGGTGGGA-AAAAAGCCTTTCTTGCGAAAACAAAGCACCAATACCAGGTATCCTAATGA
* * *
1169116 GAATACTATGTTTATGGTG-CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATT-ATTGTTTA
65 GAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATAAGTATTCA-TGTTTA
* *
1169179 TCTTTATTTAAAAGATAAACTTTGATTCTATCAAGAACAAT-G-G-AAAGAAAAGTTTTTCTTGC
129 TC-TTATTTAAAAGACAAACTTTGATTCTATCAA-AA-AATAGTGAAAAGAAAAGCTTTTCTTGC
* *
1169241 GACCCCAAAGCATCAATGTCATGCATCCTAATTAAGGGAATGCGTTTTTGGATCCCAATCTTGAA
191 GACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTTGAA
* * * *
1169306 AAGAATGGAGATTGCTCCAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGA
256 AAGAATGGACATTGCTACAAGAATCGATGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAGA
1169371 AAAATAGGCAAAGAAAAGATTTC
321 AAAATAGGCAAAGAAAAGATTTC
1169394 TATGCAAAAG
Statistics
Matches: 301, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
353 1 0.00
354 185 0.61
355 109 0.36
356 3 0.01
357 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (355 bp):
AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAACAAAGCACCAATACCAGGTATCCTAATGAG
AAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATAAGTATTCATGTTTATC
TTATTTAAAAGACAAACTTTGATTCTATCAAAAAATAGTGAAAAGAAAAGCTTTTCTTGCGACAC
CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTTGAAAAGAA
TGGACATTGCTACAAGAATCGATGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAGAAAAAT
AGGCAAAGAAAAGATTTCCTTGCACAAAAG
Found at i:1169943 original size:475 final size:473
Alignment explanation
Indices: 1169052--1170111 Score: 1425
Period size: 475 Copynumber: 2.2 Consensus size: 473
1169042 TGCACAAAAG
* *
1169052 AAAAATTGGTGGACAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAG
1 AAAAATTGGTGGA-AAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATC-GGTATCCTAATGAA
* *
1169117 AATACTATGTTTATGGTGCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTATTGTTTATCT
64 AAAACTATGTTTACGGTGCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTATTGTTTATCT
* * * * * * * *
1169182 TTATTTAAAAGATAAACTTTGATTCTATCAAGAACAATGGAAAGAAAAGTTTTTCTTGCGACCCC
129 TTATTTAAAAGACAAACTTTGATTCAAACAAAAACAATGGAAAAAAAAGCTTTTCTTGAGACACC
* * *
1169247 AAAGCATCAATGTCATGCATCCTAATTAAGGGAATGCGTTTTTGGATCCCAATCTTGAAAAGAAT
194 AAAGCATCAATGTCATGCATCCTAATGAAAGGAATGCGTTTTTGGAACCCAATCTTGAAAAGAAT
*
1169312 GGAGATTGCTCCAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATA
259 GGAGATTGCTCCAAGAATTGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAGAAAAATA
* * *
1169377 GGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAAGAGAATGT
324 GGCAAAGAAAAGATTTCTATACAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATAT
1169442 ATTTATAGTGCCTAATCACAAAATGAACAAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTG
389 ATTTATAGTGCCTAATCACAAAATGAACAAAGATCATTACTAGAATCCATGTTTGTCTCGA-TTG
*
1169506 AGGCAGGAACTTAAACTCTAC
453 AGGCAAGAACTTAAACTCTAC
* * *
1169527 GAAAATTGGTGGAAACAAAGCCTTTCTTACAAAATCAAAGCACCAATATCAGGTATCCTAATGAA
1 AAAAATTGGTGGAAA-AAAGCCTTTCTTGCAAAACCAAAGCACCAATATC-GGTATCCTAATGAA
* *
1169592 AAAACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGAATTGTATGAGTATTCA-TGTTTGT
64 AAAACTATGTTTACGGTG-CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATT-ATTGTTTAT
* **
1169656 C-TTATTTAAGAGACAAACTTTGATTCAAACAAAAACGGTGGAAAAAAAAGCTTTTCTTGAGACA
127 CTTTATTTAAAAGACAAACTTTGATTCAAACAAAAACAATGGAAAAAAAAGCTTTTCTTGAGACA
* * * * *
1169720 CCAAAGCATTAATGTTATGTATCCTAATGAAAGGAATGTGTTTTTGGAACCTAATCTTGAAAAGA
192 CCAAAGCATCAATGTCATGCATCCTAATGAAAGGAATGCGTTTTTGGAACCCAATCTTGAAAAGA
* * * * *
1169785 TTGGAGATTGTTGCGAGAATTGATGCTTGTCTTATTTAAAGGATGAA-TTTGATTTTAAAGAATA
257 ATGGAGATTGCTCCAAGAATTGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTT-AAGAAAA
* * *
1169849 TTGGGCAAAGAAAAGATTTGC-ATACAAAAGAAAATCCTCAATATCATTTATCCTAAT-AAGGAG
321 ATAGGCAAAGAAAAGATTT-CTATACAAAAGAAAATCATCAATATCATTTATCCTAATGAA-GAG
* * ** *
1169912 TATATGTTTATAGTGCCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCG
384 AATATATTTATAGTGCCTAATCACAAAATGAACAAAGATCATTACTAGAATCCATGTTTGTCTCG
* * *
1169977 ATTGAGGCAAGAACTTATATTTTAC
449 ATTGAGGCAAGAACTTAAACTCTAC
1170002 AAAAATTGGTTGGGAAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTAATG
1 AAAAATTGG-T-GG-AAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCG-GTATCCTAATG
* * * * * *
1170067 AGAAGACAATTTTTACAACGT-TTAATCTTGAAAAGAAT-GGGAATA
62 AAAAAACTATGTTTAC--GGTGCTAATCTTGAAAAGAATGGGGAATA
1170112 TGAAGGCTCA
Statistics
Matches: 512, Mismatches: 60, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
474 13 0.03
475 368 0.72
476 52 0.10
477 74 0.14
478 3 0.01
479 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (473 bp):
AAAAATTGGTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGGTATCCTAATGAAAA
AACTATGTTTACGGTGCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTATTGTTTATCTTT
ATTTAAAAGACAAACTTTGATTCAAACAAAAACAATGGAAAAAAAAGCTTTTCTTGAGACACCAA
AGCATCAATGTCATGCATCCTAATGAAAGGAATGCGTTTTTGGAACCCAATCTTGAAAAGAATGG
AGATTGCTCCAAGAATTGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAGAAAAATAGG
CAAAGAAAAGATTTCTATACAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATAT
TTATAGTGCCTAATCACAAAATGAACAAAGATCATTACTAGAATCCATGTTTGTCTCGATTGAGG
CAAGAACTTAAACTCTAC
Found at i:1170886 original size:20 final size:19
Alignment explanation
Indices: 1170857--1170908 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
1170847 ACAAGCAATA
**
1170857 TATCGATACAATTCATCATG
1 TATCGATACAATGAAT-ATG
*
1170877 TATTGATACAATGAATATG
1 TATCGATACAATGAATATG
1170896 TATCGATACAATG
1 TATCGATACAATG
1170909 TATCGATACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (19 bp):
TATCGATACAATGAATATG
Found at i:1170911 original size:13 final size:13
Alignment explanation
Indices: 1170893--1170919 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1170883 TACAATGAAT
1170893 ATGTATCGATACA
1 ATGTATCGATACA
1170906 ATGTATCGATACA
1 ATGTATCGATACA
1170919 A
1 A
1170920 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1170935 original size:33 final size:32
Alignment explanation
Indices: 1170874--1170938 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
1170864 ACAATTCATC
* *
1170874 ATGTATTGATACAATGAATATGTATCGATACA
1 ATGTATCGATACAAAGAATATGTATCGATACA
*
1170906 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-ATGTATCGATACA
1170939 TCTGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACAAAGAATATGTATCGATACA
Found at i:1172139 original size:468 final size:466
Alignment explanation
Indices: 1171227--1172750 Score: 1826
Period size: 468 Copynumber: 3.2 Consensus size: 466
1171217 GATCCTAACA
* * * *
1171227 GAATAGTATGAGTATTCA-GTTTATCTTATCTAAGAGACAAACTTTGATTCTATCATAAACGGTG
1 GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
* * *
1171291 GAAAGAAAAGGTATTC-T-T---A-C-AAGCATT-AATGTCATGTATCCTAATGAAGGGAATATG
66 GAAAGAAAAGCTTTTCTTATGACACCAAAGC-TTCAATGTCATGTATCCTAATGAAGGGAATGTG
* * ** *
1171348 TTTTTTGATT-CCAATCCTGAAAAGAATGGCAATTGTTACAAGAATCGATGCTTGTCTTATTTAT
130 -TTTTTGGTTCCCAAT-CTTAAAAGAAAAG-AATTGTTACTAGAATCGA---TTGTCTTA---A-
* * * *
1171412 GGGATGAATTTTGACTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
185 GGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * ** * * *
1171477 AATGTC-GTTAATCTTAGTGATAAGAATATGTTTATAGTGCCTAATCACAAAATGAATGGAGATC
250 AATATCAATT-ATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * * * * *
1171541 ATTGCTAGAGTCCATATTTATCTCATTTGAGGCATGAACTTAGACTTCAAAAAAAGTGGTAGAAA
314 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGTGGAAA
* * * * * * * *
1171606 GAAAGCCTTCCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTACGTTTATG
379 AAAAGCCTTTCTTGTG-AACCAAAGCACCAATATTGGGTATCCTAATGAGAAGACTATGTTTATG
*
1171671 GTGCCTAATCCCGAAAAGAATGGG
443 GTGCCTAATCCTGAAAAGAATGGG
* * *
1171695 GATTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGACAAACTTTGATTCAATCAAAAACGGTG
1 GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
**
1171760 GAAAGAAAAATTTTTCTTATGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGT
66 GAAAGAAAAGCTTTTCTTATGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGT
* *
1171825 TTTTGGTTCCCAATCTTAAAAAGAAAAGAGACTGTTACTAGAATCGA-TG-CTTAAGAGATGAAC
131 TTTTGGTTCCCAATCTT-AAAAGAAAAGA-ATTGTTACTAGAATCGATTGTCTTAAGGGATGAAC
* * *
1171888 TTGGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAAT
194 TTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAAT
*
1171953 TATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAAATGAATGAA-AACTATTACTAG
259 TATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATC-ATTACTAG
* *
1172017 AATCCATGTTTGTCTCATTTGAGGCACGAACATAGATTTTACAAAAATTGGTGGAAAAAAAGCCT
322 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGTGGAAAAAAAGCCT
** ** * *
1172082 TTCTTGTGAACCTAAAGTGCCAATATTGGGTATCCTAACAAGAAGACGATATTTATGGTGCCTAA
387 TTCTTGTGAACC-AAAGCACCAATATTGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
1172147 TCATGAACAGAATGGG
451 TCCTGAAAAGAATGGG
* * * *
1172163 GAATAGTGTTAGTATTCATGTTTGTCTTATTTAAGAGACAAACTATGATTTAATCAAAAACGGTG
1 GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
* * * * *
1172228 GAAATAAAAGCTTTTCTTATGACACCAAAGCATCAATGCCATGAATCCCAATGAA-GGAATTGTG
66 GAAAGAAAAGCTTTTCTTATGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAA-TGTG
* *
1172292 TTTTTGGTTCCCAATCTCTAAAAGAACAAAAATTGCTACTAGAATCGATTCTTGTCTTATTTAAG
130 TTTTTGGTTCCCAATCT-TAAAAGAA-AAGAATTGTTACTAGAATCGA---TTGTC----TTAAG
* * * *
1172357 GGATGAACTTTGATATTT-CGTAAAATAGGGTAAAGAAAAGATTTGCATGCAAAAGAAAATCATT
186 GGATGAACTTTGAT-TTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* *
1172421 AATATCATTTATCCTAATGAGGAGTATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCA
250 AATATCAATTATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
1172486 TTACTAGAATCCATGTTTGTCTCATTTGAGGTATG-ACTTAGATTTTACAAAAATTGGTGGGAAA
315 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGTGGAAAA
* *
1172550 AAA-CCTTTCTTGTGAAGCCAAAGCACCAATATTGGGTATGCTAATGGGAAGACTATGTTTATGG
380 AAAGCCTTTCTTGTGAA-CCAAAGCACCAATATTGGGTATCCTAATGAGAAGACTATGTTTATGG
* *
1172614 TGCCTTATCCTGAAAAGAATGGA
444 TGCCTAATCCTGAAAAGAATGGG
* *
1172637 GAATAGTATGAGTATTCATGTTTGT-TTTTTTAAGAGACAATCTTTGATTCAATCAAAAACGGTG
1 GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
* *
1172701 GAAAGAAAAGCTTTTCTTACGACAGCAAAGCTTCAATGTCATGTATCCTA
66 GAAAGAAAAGCTTTTCTTATGACACCAAAGCTTCAATGTCATGTATCCTA
1172751 GAATCCATTA
Statistics
Matches: 906, Mismatches: 119, Indels: 57
0.84 0.11 0.05
Matches are distributed among these distances:
467 104 0.11
468 300 0.33
469 58 0.06
470 1 0.00
471 5 0.01
472 4 0.00
473 79 0.09
474 93 0.10
475 46 0.05
476 107 0.12
477 106 0.12
478 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (466 bp):
GAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTG
GAAAGAAAAGCTTTTCTTATGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGT
TTTTGGTTCCCAATCTTAAAAGAAAAGAATTGTTACTAGAATCGATTGTCTTAAGGGATGAACTT
TGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTA
TCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
CATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGTGGAAAAAAAGCCTTTCT
TGTGAACCAAAGCACCAATATTGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
AAAAGAATGGG
Found at i:1172784 original size:19 final size:19
Alignment explanation
Indices: 1172756--1172804 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
1172746 TCCTAGAATC
1172756 CATTACTAGAATCCAAGAT
1 CATTACTAGAATCCAAGAT
*
1172775 CATTAATAGAATCCAAGAT
1 CATTACTAGAATCCAAGAT
1172794 CATTACTAGAA
1 CATTACTAGAA
1172805 GACTGTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (19 bp):
CATTACTAGAATCCAAGAT
Found at i:1176323 original size:5 final size:5
Alignment explanation
Indices: 1176313--1176362 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
1176303 TTTATTCGAT
1176313 ATAAA ATAAA ATAAA AGTAAA A-AAA AT-AA A-AAA ATAAA AGTAAA A-AAA
1 ATAAA ATAAA ATAAA A-TAAA ATAAA ATAAA ATAAA ATAAA A-TAAA ATAAA
1176361 AT
1 AT
1176363 CATCATGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
4 14 0.36
5 15 0.38
6 10 0.26
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (5 bp):
ATAAA
Found at i:1176853 original size:35 final size:36
Alignment explanation
Indices: 1176814--1176881 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
1176804 ATTTTATAAA
**
1176814 AAAAGAAGGAAAA-AAAGGTAACTCACGGCAAGAGG
1 AAAAGAAAAAAAAGAAAGGTAACTCACGGCAAGAGG
*
1176849 AAAAGAAAAAAAAGAAAGGTAACTCATGGCAAG
1 AAAAGAAAAAAAAGAAAGGTAACTCACGGCAAG
1176882 TGGGAGAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 11 0.38
36 18 0.62
ACGTcount: A:0.57, C:0.10, G:0.25, T:0.07
Consensus pattern (36 bp):
AAAAGAAAAAAAAGAAAGGTAACTCACGGCAAGAGG
Found at i:1177168 original size:122 final size:123
Alignment explanation
Indices: 1176943--1177172 Score: 293
Period size: 122 Copynumber: 1.9 Consensus size: 123
1176933 TAAGGGAATA
* *
1176943 AACAGTAGCTTTCAGCTCCAACAAAGCACCCAAAACTAGCAATTCGAGTTTCTTCCAACACCTAC
1 AACAGTAGCTTCCAGCTCCAACAAAGCACCCAAAACTAGCAACTCGAGTTTCTTCCAACACCTAC
* * *
1177008 GGCAACAGCAGCTTCCATGAGCACTTGCTGCTCAAGCACTCCATCAGCAGCATCCACC
66 GACAACAGCAGCTTCCACGAGCACTTGCAGCTCAAGCACTCCATCAGCAGCATCCACC
* * ** *
1177066 AACAGTAGCTTCCAGCTCCAACAAAGCA-CCAAAACTAGTAGCTCGAGTTTCTTTTAGCATCC-A
1 AACAGTAGCTTCCAGCTCCAACAAAGCACCCAAAACTAGCAACTCGAGTTTCTTCCAACA-CCTA
* ** ** *
1177129 TGACAGTAGCAGCTTCCACGAGTGCTTGCAGCTCGAGCACTCCA
65 CGACAACAGCAGCTTCCACGAGCACTTGCAGCTCAAGCACTCCA
1177173 ACAGTGGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
122 61 0.68
123 29 0.32
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.21
Consensus pattern (123 bp):
AACAGTAGCTTCCAGCTCCAACAAAGCACCCAAAACTAGCAACTCGAGTTTCTTCCAACACCTAC
GACAACAGCAGCTTCCACGAGCACTTGCAGCTCAAGCACTCCATCAGCAGCATCCACC
Found at i:1179537 original size:42 final size:42
Alignment explanation
Indices: 1179482--1179600 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 42
1179472 TTCTTCTCTC
* *
1179482 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * * *
1179524 CTCCTCTTATCATCCCTCATATCTCTACTATCTCTCTTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * *
1179566 CTTCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1179601 TTGAGGGCTA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.11, C:0.43, G:0.01, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:1181368 original size:21 final size:19
Alignment explanation
Indices: 1181346--1181393 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
1181336 TGAGTGAATA
1181346 AAACTTGTTTACGATTTT-TT
1 AAACTT-TTT-CGATTTTATT
1181366 AAACATTTTTCGATTTTATT
1 AAAC-TTTTTCGATTTTATT
1181386 CAAACTTT
1 -AAACTTT
1181394 GTTATATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 7 0.28
20 12 0.48
21 6 0.24
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (19 bp):
AAACTTTTTCGATTTTATT
Found at i:1183794 original size:22 final size:20
Alignment explanation
Indices: 1183754--1183794 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
1183744 CTATAGACCT
*
1183754 TAATTCATATCAAACAAATA
1 TAATTCATAACAAACAAATA
1183774 TAATTCATTAACACAACAAAT
1 TAATTCA-TAACA-AACAAAT
1183795 TTAAACACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (20 bp):
TAATTCATAACAAACAAATA
Found at i:1186660 original size:21 final size:20
Alignment explanation
Indices: 1186627--1186669 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
1186617 TATTAAAAAG
* *
1186627 TTAGCTAATAAAAATAATGAA
1 TTAGCTAAGAAAAACAA-GAA
*
1186648 TTAGCTAGGAAAAACAAGAA
1 TTAGCTAAGAAAAACAAGAA
1186668 TT
1 TT
1186670 TGCATGATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (20 bp):
TTAGCTAAGAAAAACAAGAA
Found at i:1193154 original size:20 final size:20
Alignment explanation
Indices: 1193129--1193182 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1193119 GTTAGAAGCA
**
1193129 ATGTATCGATACAAT-TCATG
1 ATGTATCGATACAATGT-ACC
1193149 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
1193169 ATGTATCGATACAA
1 ATGTATCGATACAA
1193183 ACAATGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1194610 original size:477 final size:474
Alignment explanation
Indices: 1193590--1194815 Score: 1524
Period size: 477 Copynumber: 2.6 Consensus size: 474
1193580 CTAACAGAAT
* * * * * * * *
1193590 AGTATGAGTATTCAGGTTTATCTTATTTAAAAGATATACTTTGATTCTAT-AATAAACGGTGGAA
1 AGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAA-AAACAGTGGAA
* * *
1193654 AGAAAAGGTATTC-T-TG----C-AAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTT
65 AGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * * *
1193712 TTTATCCTAATCTTGAAAAGAATGGCGATTGTTACGAGAATCGATGTTTGTCTTATTTATGGGAT
130 TGT-TCCCAATCTT-AAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGAT
* * *
1193777 GAATTTTGATTTTAAAGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
193 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * *
1193842 C-GTTAATCTTAATGATGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
258 CAATT-ATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
* * * * *
1193906 CAGAGTCCATATTTGTTTTATTCAGGGCATGAACTTAGACTTCACAAAAATTGGTAGAAAGAAAG
322 CAGAATCCATATTTGTCTCATTCAGGGCATGAACATAGACTTCACAAAAATTGGTAGAAAAAAAG
* * * * *** *
1193971 CCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATTTGAAAACTACGTTTATGGTGCC
387 CCTTTCTTGAGAAACCAAAGCACCAATATCGGGTATCCTAACAAGAAAACTACATTTATGGTGCC
* **
1194036 TAATCCCGAAAAGAATGGGGATT
452 TAATCACGAAAAGAATGGGGAAG
1194059 AGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACAGTGGAAA
1 AGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACAGTGGAAA
* * *
1194124 GAAAAGCTTTTCTTGTGACACCAAAGCATTAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTT
66 GAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* * *
1194189 GGTTCCCAATCTTAAAAAGAAAGGAGACTGTTACTAGAATCGATGCTTGTCTTATTTAAGAGATG
131 -GTTCCCAATCTT-AAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
1194254 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
194 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
1194319 AATTATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAAATGAATGAAAATCATTACT
259 AATTATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAAATCATTACC
* * * * * *
1194384 AGAATCTATGTTTGTCTCATT-TGAGGCATGAACATAGATTTTACAAAAATTGGTGGAAAAAAAG
323 AGAATCCATATTTGTCTCATTCAG-GGCATGAACATAGACTTCACAAAAATTGGTAGAAAAAAAG
* ** * * *
1194448 GCTTTCTTGAG-AACCTAAAGTGCCAATATCGGGTATCCTAACAAGAAGACTATATTTATTGTGC
387 CCTTTCTTGAGAAACC-AAAGCACCAATATCGGGTATCCTAACAAGAAAACTACATTTATGGTGC
* *
1194512 CTAATCATGAACAGAATGGGGAAG
451 CTAATCACGAAAAGAATGGGGAAG
* * * *
1194536 AGTGTTAGTATTCATGTTTGTCTTATTTAGGAGACAAA-TTATGATTCAATCAAAAACAGTGGAA
1 AGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTT-TGATTCAATCAAAAACAGTGGAA
* * * *
1194600 ATAAAAGCTTTTCTTATGACACTAAAGCATCAATGCCATGTATCCTAATGAAGGGATTGTGTTTT
65 AGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * *
1194665 TAGTTCCCAATCTCTAAAAGAATGAAAATTGTTACTAAAATCGATGCTTATCTTATTTAAGGGAT
130 T-GTTCCCAATCT-TAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGAT
* * *
1194730 GAACTTTGATATTT-AGTAAAATAGGGCAAAGAAAAGATTTGCATGCAAAAGAAAATCATTAATA
193 GAACTTTGAT-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
*
1194794 TCATTTATCCTAATGAGGAGTA
257 TCAATTATCCTAATGAGGAGTA
1194816 ACGCATCAAT
Statistics
Matches: 653, Mismatches: 88, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
469 64 0.10
470 3 0.00
471 2 0.00
475 1 0.00
476 194 0.30
477 385 0.59
478 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
AGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACAGTGGAAA
GAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
GTTCCCAATCTTAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAA
CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAA
TTATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACCAGA
ATCCATATTTGTCTCATTCAGGGCATGAACATAGACTTCACAAAAATTGGTAGAAAAAAAGCCTT
TCTTGAGAAACCAAAGCACCAATATCGGGTATCCTAACAAGAAAACTACATTTATGGTGCCTAAT
CACGAAAAGAATGGGGAAG
Found at i:1195718 original size:476 final size:471
Alignment explanation
Indices: 1194818--1198788 Score: 4671
Period size: 476 Copynumber: 8.3 Consensus size: 471
1194808 GAGGAGTAAC
* * * * * *
1194818 GCATCAATATCATGTATCCTAATGAAGGGAATGTATTTTGGGATCCCAATCTTGAAAAGAATAGA
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTT-TGAACCCAATCTTGAAAAGAATGGA
* *
1194883 GATTGTTGCAAGAATCGATGCTTGTCTTATTTATGGGATGAA-TTTGATTTTAAAAAATATTGGG
65 GATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAATA--GGG
* * * * *
1194947 CAAAAAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTATTCTAATAAGGAAAATGTGT
128 CAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGT
* * *
1195012 TTACAGTGTCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGT
193 TTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
*
1195077 CAC-AGACTTAGAC-CTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCA
258 CACGA-ACTTAGACTCTTACAAAAATTGGTGG-AAAAAAGCCTTTCTTACGAAACCAAAGCACCA
* * *
1195140 ACATCGGGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTAGAAAAGAATGTGGAATAG
321 ACATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAG
* * * * *
1195205 AATGAGTATTCATGTTTGTCTTATGTAAGAAACAAACTTTAATTCTATAAAAAATGGTAGAAAGA
386 TATGAGTATTCATGTTTGTCTTAT-TTAGAGACAAACTTTGATTCTATAAAAAACGGT-GAAAGA
* **
1195270 AAAGTTTTTCTTGCAACACCAAA
449 AAAGCTTTTCTTGTGACACCAAA
*
1195293 CCATCAATG-CATGTATCCTAATGAAGGAAATGTGTTTTTGAACCCTAATCTTGAAAAGAATGGA
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGAACCC-AATCTTGAAAAGAATGGA
* * * * *
1195357 GATTATTGCGAGAATAGCTGCGTATCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGG
65 GATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA--AAAAATAGGG
* **
1195422 CAAAGAAAAGTTTTCCATGCATAAG-AAATCATCAATATTTTTTATCCTAATAAGGAGAATGTGT
128 CAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGT
* ** * * * * * * **
1195486 TTATAGTATCTAATGACAAAAAGAATTAAGATCACTAGTAAGAATCCATGTTTATAGCATTTGAG
193 TTACAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG
* *
1195551 GCACGAACTTAGACTCTT-CAAAAATTAGTGGTAAAAGAAGCTTTTCTTGA-GAAACCAAAGCAC
257 GCACGAACTTAGACTCTTACAAAAATTGGTGG-AAAA-AAGCCTTTCTT-ACGAAACCAAAGCAC
* * * * **
1195614 C-ACTATCGGGTATCCTAATAAGAAGTCTATGTTTATGGTTCCTAATCTTAAAAAGTTTGGGGAA
319 CAAC-ATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAA
* * *
1195678 TAGTATGAGTATTCATGTTTGTGTTATTTAAGAGACAAACTTTGATTCAATAAAAAACGATGGAA
383 TAGTATGAGTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATAAAAAACGGT-GAA
*
1195743 AGAAAAGCTTTTCTTGCGACACCAAA
446 AGAAAAGCTTTTCTTGTGACACCAAA
* * *
1195769 GCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTTGGAACCCAATCTTGAAAAGATTGGA
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTT-GAACCCAATCTTGAAAAGAATGGA
* * ** * *
1195834 GATTGTTGCGAGAATTGATGCTTGTCTTATCTAAGATATGAATTTTGATTTTAAAGAATATTGGG
65 GATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AA-ATAGGG
* * * * * *
1195899 CAAAGAAAAGATTTCCATGCAAAAGAAAATCCTTAATATCATTTACCCTAATGAGGAGAATATGT
128 CAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGT
* * * *
1195964 TGAC-GTTGCCTAATTACAAAATGAATGAAGATCCTTACTAGAATCCATATTTGTCTCATTTGAG
193 TTACAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* *
1196028 GCACGAACTTAAACTGTT-CAAAAATTGGTGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAA
257 GCACGAACTTAGACTCTTACAAAAATTGGTGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAA
* * * *
1196092 CATCGGGTAT-CTAATGAGAAGACTATGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTGGT
322 CATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGT
* * * *
1196156 ATGAGTATTCATGTTTGTCTTATTTAGAAGATAAACTTTGATTTTATAAAAAACAGTGGGAAGAA
387 ATGAGTATTCATGTTTGTCTTATTTAG-AGACAAACTTTGATTCTATAAAAAACGGT-GAAAGAA
* *
1196221 AAGCTTATCTCGTGACACCAAA
450 AAGCTTTTCTTGTGACACCAAA
* ** * *
1196243 GCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTTTAGGTTCCCAATGC-TGAAAATAATA
1 GCATCAATGTCATGTATCCTAATGAAGGA-AATGTGTTTT-TGAACCCAAT-CTTGAAAAGAATG
* * ** *
1196306 GAGACTATTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAG
63 GAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AA-AAAATAG
* *
1196371 GGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCGTCAATATCGTTTATCCTAATAAGGAGAATG
126 GGCAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
* **** * *
1196435 TGTATGTTTTGCCTAATCACAAAATGAATTAAGATCATTACTAGAATCCAAGTTTGTCTCATTTG
190 TGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
1196500 AGGCACGAACTTAAACT-TTTCCAAAATTGGTGGGGAAAAAA-CCTTACTTGCAAAACCAAAGCA
255 AGGCACGAACTTAGACTCTTACAAAAATTGGT--GGAAAAAAGCCTTTCTTACGAAACCAAAGCA
* ** * * * *
1196563 CCAATATCATGTATCCTATTCAGAAAACCATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAA
318 CCAACATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAA
* * * * * *
1196628 TAATATGAGTATTCATGCTTGTCTTATTTGAGAGATAAACTTTCATTCTATCAAAAACGATGTAA
383 TAGTATGAGTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATAAAAAACGGTG-AA
1196693 AGAAAAGCTTTTCTTGTGACACCAAA
446 AGAAAAGCTTTTCTTGTGACACCAAA
* * *
1196719 GCATCAATGTCAGGTATCCTAATGAAGGGAAA-GTGTTTTTGGATCCTAATCTTGAAAAGAATGG
1 GCATCAATGTCATGTATCCTAATGAA-GGAAATGTGTTTTT-GAACCCAATCTTGAAAAGAATGG
** * * *
1196783 AGATTGTTGCGAGAATCGATATTTGTCTTAATTAAGGGATGAACTTTAATTTTAAATAATATTGG
64 AGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AA-ATAGG
* *
1196848 GCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATTCTAATAAGGAAAATGT
127 GCAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGT
* * * *
1196912 GTTTACAGTGCCTAATAAGAAAATGAATAAAGATCATTACTAGAATCAATGTTTGTCTCATTTGA
191 GTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * *
1196977 GGTACGAACTTAGAC-CTTACAAAAATTGATGGAAAAAAAGCCTTTCTTAGGAAACCCAAGCACC
256 GGCACGAACTTAGACTCTTACAAAAATTGGTGG-AAAAAAGCCTTTCTTACGAAACCAAAGCACC
* * * ** * *
1197041 AATATCGGGTATCCTAATGACAAAACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGAGATTA
320 AACATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATA
* * *
1197106 GTATGAGTATTCATGTTTGTCTTACTTAGAAGACAAACTTTGATTTTATCAAAAACGGTGAGAAG
385 GTATGAGTATTCATGTTTGTCTTATTTAG-AGACAAACTTTGATTCTATAAAAAACGGTGA-AAG
*
1197171 AAAAGCTTTTCTTGTGACACTAAA
448 AAAAGCTTTTCTTGTGACACCAAA
* * * * ** *
1197195 GCATCAATGTCATGTATCCCACTGAAGGGAATGTGTTTTAGGTTCCCAATGC-TGAAAATAATGG
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTT-TGAACCCAAT-CTTGAAAAGAATGG
* * ** * * *
1197259 AGACTATTATGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTCGATTTTAAAGAAT-GTTG
64 AGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAATAG--G
* * * * *
1197323 GCCCAAGAAAAGATTTCCAAGCAAAAGAAAATCCTCAATATCATTTATCCTAATTAGGAGAATGT
127 G-CAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGT
** * *
1197388 GTTTACAGTGCCTAATCTGAAAATGAATAAAGGTCATTACTAGAATCCATGTTTGTCTCATTTGA
191 GTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
*
1197453 GGCACGAACTTAGACT-TTACAAAAATTGGTGGCAAAAAAGGCTTTCTTACGAAACCAAAGCACC
256 GGCACGAACTTAGACTCTTACAAAAATTGGTGG-AAAAAAGCCTTTCTTACGAAACCAAAGCACC
* * * *
1197517 AACATCTGGTA-CCTCAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATT
320 AACATCGGGTATCCT-AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAAT
* * *
1197581 AGTATGAGTTTTCATGTTTGTCTTATTTGGAAGACAAACTTTGATTTTATCAAAAAGGACGG-GA
384 AGTATGAGTATTCATGTTTGTCTTATTTAG-AGACAAACTTTGATTCTAT-AAAAA--ACGGTGA
* * *
1197645 CA-AAAAGCTTATCTCGTGACACCAAA
445 AAGAAAAGCTTTTCTTGTGACACCAAA
* * * ** *
1197671 GCATCAATGTCATGTATCCTAATAAAGGAAATGTATTTTAGGTTCCCAATGC-TGAAAATAATGG
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTT-TGAACCCAAT-CTTGAAAAGAATGG
* * ** **
1197735 AGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAAT
64 AGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AA-AAAATAGG
* * * * *
1197800 GCAAAGAAAACATTTT-CATGC-AAAGCATAATCATCAATATTATTTATCCTAGTAAGAAGAATG
127 GCAAAGAAAA-GTTTTCCATGCAAAAG-AAAATCATCAATATCATTTATCCTAATAAGGAGAATG
*** * * *
1197863 TGTTTGTTGTGCCTAATCACAAAATGAACGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTA
190 TGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * *
1197928 AGGCACGAACTTGGACT-TTACAAAAATTAGTGGGGAAAAAA-CCTTTCTTGCGAAACTAAAGCA
255 AGGCACGAACTTAGACTCTTACAAAAATT-G-GTGGAAAAAAGCCTTTCTTACGAAACCAAAGCA
* ** * * *
1197991 CCAATATCATGTATCCTAATCAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAATGGCGAA
318 CCAACATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAA
* * * *
1198056 TAGTATGAGTATTCATGCTTGTCTTATTTGAGAGATAAACTTTCATTCTATGAAAAACGGTGTAA
383 TAGTATGAGTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATAAAAAACGGTG-AA
1198121 AGAAAAGCTTTTCTTGTGACACCAAA
446 AGAAAAGCTTTTCTTGTGACACCAAA
* * * *
1198147 GCATCACTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCTAATCTTGAAAAGAATGGA
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTT-GAACCCAATCTTGAAAAGAATGGA
* * ** * *
1198212 GACTGTTGCGATAATCGATATTTGTCTTATTTAAGAGATGAACTTTGATTTTAAATAATATTGGG
65 GATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AA-ATAGGG
* *
1198277 CAAAGAAAAGAATTT-CATGCAAAAGAAAATCATCAATATCATTTATTCTAA-AGAGGAGAATGT
128 CAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGT
* * **
1198340 GTTTACAGTGCCTAATTATAAAATGAATGAAGATCATTACTAGAATATATGTTTGTCTCATTTGA
191 GTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * *
1198405 GACACGAACTTAGA-TCTTATAAAAATTGGTGAAAAAAAGCCTTTCTTACAAAACCAAAGCACCA
256 GGCACGAACTTAGACTCTTACAAAAATTGGTGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCA
* * *
1198469 ACATTGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-TCAGAAAAGAATGGGGATTA
321 ACATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCT-TGAAAAGAATGGGGAATA
* *
1198533 GAATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAAACGGTGGAAA
385 GTATGAGTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTAT-AAAAAACGGT-GAAA
**
1198598 GAAAAGCTTTTCTTGCAACACCAAA
447 GAAAAGCTTTTCTTGTGACACCAAA
* * *
1198623 CCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGACCCCAATCGTGAAAAGAATGGA
1 GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTT-GAACCCAATCTTGAAAAGAATGGA
* * *
1198688 GATTGTTGCGAGAATCGATGCTTATTTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGG
65 GATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-A-AAAAATAGGG
*
1198753 CAAAGAAAAGTTTTCCATGCACAAGAAAATCATCAA
128 CAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAA
1198789 AGAAAAGAGA
Statistics
Matches: 2994, Mismatches: 419, Indels: 165
0.84 0.12 0.05
Matches are distributed among these distances:
473 15 0.01
474 512 0.17
475 336 0.11
476 1840 0.61
477 209 0.07
478 78 0.03
479 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (471 bp):
GCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGAACCCAATCTTGAAAAGAATGGAG
ATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAATAGGGCAA
AGAAAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTA
CAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
GAACTTAGACTCTTACAAAAATTGGTGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAACATC
GGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGA
GTATTCATGTTTGTCTTATTTAGAGACAAACTTTGATTCTATAAAAAACGGTGAAAGAAAAGCTT
TTCTTGTGACACCAAA
Found at i:1196318 original size:159 final size:157
Alignment explanation
Indices: 1196125--1198689 Score: 813
Period size: 159 Copynumber: 16.2 Consensus size: 157
1196115 TATGTTTATT
* * * ** *
1196125 GTGCCTAATCCTGAAAAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTATTTAGAAGATAA
1 GTGCCTAAT-CTGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGAAGATGA
* * *
1196190 ACTTTGATTTTATAAAAAACAGTGGGAAGAAAAGCTTATCTCGTGACACCAAAGCATCAATGTCA
65 ACTTTGATTTTATAAAAAATAGTGGGAAGAAAAGCTT-TCTCGTGAAACCAAAGCATCAATATCA
1196255 TGTATCCTAATGAAGAGAATGTGTTTTAG
129 TGTATCCTAATGAAGAGAATGTGTTTTAG
* * * * * * *
1196284 GTTCCCAATGCTGAAAATAATAGAGACTATTATGAGAATTGATGCTTGTCTTATTTA-AGGGATG
1 GTGCCTAAT-CTGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGA-AGATG
* * * ** * *
1196348 AACTTTGATTTTA-AAGAAAATAG-GGCAAAGAAAAGATTT-TCATGCAAAAGAAAATCGTCAAT
64 AACTTTGATTTTATAA-AAAATAGTGG-GAAGAAAAGCTTTCTCGTG--AAACCAAAGCATCAAT
* *
1196410 ATCGTTTATCCTAAT-AAGGAGAATGTGTATGTT--
125 ATCATGTATCCTAATGAA-GAGAATGTGT-T-TTAG
* ** ** * * * * *
1196443 TTGCCTAATCACAAAATGAATTAAGA-TCATTACT-AGAATCCAAGTTTGTCTCATTT-GAGGCA
1 GTGCCTAATCTGAAAAT-AATGGAGACT-ATTA-TGAGTATTCATGTTTGTCTTATTTAGAAG-A
* ** ** * * * * * ** *
1196505 CGAACTTAAACTTTT-CCAAAATTGGTGGGGAA-AAAACCTTACTTGCAAAACCAAAGCACCAAT
62 TGAACTTTGA-TTTTATAAAAAATAGT-GGGAAGAAAAGCTTTCTCGTGAAACCAAAGCATCAAT
** * **
1196568 ATCATGTATCCT-ATTCAGAAAACCATG-TTTATG
125 ATCATGTATCCTAATGAAGAGAA-TGTGTTTTA-G
* * * * * *
1196601 GTGCCTAATCTTGAAAAGAATGGGGAATAATATGAGTATTCATGCTTGTCTTATTT-GAGAGATA
1 GTGCCTAATC-TGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGA-AGATG
* * * * ** * * *
1196665 AACTTTCATTCTATCAAAAA-CGATGTAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
64 AACTTTGATTTTATAAAAAATAG-TGGGAAGAAAAGC-TTTCTCGTGAAACCAAAGCATCAATAT
* * * *
1196729 CAGGTATCCTAATGAAGGGAAAGTGTTTTTG
127 CATGTATCCTAATGAAGAGAATGTGTTTTAG
* * * ** * * * *
1196760 GAT-CCTAATCTTGAAAAGAATGGAGATTGTTGCGAG-AATCGATATTTGTCTTAATTA-AGGGA
1 G-TGCCTAATC-TGAAAATAATGGAGACTATTATGAGTATTC-ATGTTTGTCTTATTTAGA-AGA
* * * * * ** *
1196822 TGAACTTT-AATTT-TAAATAATATTGGGCAAAGAAAAGATTT-TCATGCAAAAGAAAATCATCA
62 TGAACTTTGATTTTATAAAAAATAGTGGG--AAGAAAAGCTTTCTCGTG--AAACCAAAGCATCA
* * * *
1196884 ATATCATTTATTCTAAT-AAGGAAAATGTG-TTTACA
123 ATATCATGTATCCTAATGAA-GAGAATGTGTTTTA-G
** ** * * *
1196919 GTGCCTAATAAGAAAATGAATAAAGA-TCATTACT-AG-AATCAATGTTTGTCTCATTT-GAGGT
1 GTGCCTAATCTGAAAAT-AATGGAGACT-ATTA-TGAGTATTC-ATGTTTGTCTTATTTAGAAG-
* * ** * * * * * *
1196980 ACGAACTTAGACCTTA-CAAAAATTGAT-GGAAAAAAAGCCTTTCTTAG-GAAACCCAAGCACCA
61 ATGAACTTTGATTTTATAAAAAATAG-TGGGAAGAAAAG-CTTTC-TCGTGAAACCAAAGCATCA
** *
1197042 ATATCGGGTATCCTAATGACA-A-AACTATG-TTTATG
123 ATATCATGTATCCTAATGA-AGAGAA-TGTGTTTTA-G
* * * * * **
1197077 GTGCCTAATCCCGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTACTTAGAAGACAA
1 GTGCCTAAT-CTGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGAAGATGA
* ** * * * * *
1197142 ACTTTGATTTTATCAAAAACGGTGAGAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCA
65 ACTTTGATTTTATAAAAAATAGTGGGAAGAAAAGC-TTTCTCGTGAAACCAAAGCATCAATATCA
* * *
1197207 TGTATCCCACTGAAGGGAATGTGTTTTAG
129 TGTATCCTAATGAAGAGAATGTGTTTTAG
* * * *
1197236 GTTCCCAATGCTGAAAATAATGGAGACTATTATGAG-AATCGATGCTTGTCTTATTTA-AAGGAT
1 GTGCCTAAT-CTGAAAATAATGGAGACTATTATGAGTATTC-ATGTTTGTCTTATTTAGAA-GAT
* * * * ** ** * *
1197299 GAACTTCGA-TTT-TAAAGAAT-GTTGGCCCAAGAAAAGATTTC-CAAGCAAAAGAAAATCCTCA
63 GAACTTTGATTTTATAAAAAATAG-TGG--GAAGAAAAGCTTTCTC--GTGAAACCAAAGCATCA
* * * *
1197360 ATATCATTTATCCTAATTAGGAGAATGTG-TTTACA
123 ATATCATGTATCCTAATGAAGAGAATGTGTTTTA-G
** * * * * *
1197395 GTGCCTAATCTGAAAATGAATAAAG-GTCATTACT-AGAATCCATGTTTGTCTCATTT-GAGGCA
1 GTGCCTAATCTGAAAAT-AATGGAGACT-ATTA-TGAGTATTCATGTTTGTCTTATTTAGAAG-A
* * * * * * * *** * *
1197457 CGAACTTAGACTTTACAAAAATTGGTGGCAA-AAAAGGCTTTCTTACGAAACCAAAGCACCAACA
62 TGAACTTTGATTTTATAAAAAATAGTGGGAAGAAAA-GCTTTCTCGTGAAACCAAAGCATCAATA
* * *
1197521 TC-TGGTA-CCTCAAAG-AGAAGACTATG-TTTATG
126 TCAT-GTATCCT-AATGAAG-AGAATGTGTTTTA-G
* * * * * * * **
1197553 GTGCCTAATCTTGGAAAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTGGAAGACAA
1 GTGCCTAATC-TGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGAAGATGA
* * * * *
1197618 ACTTTGATTTTATCAAAAA-GGACGGGACA-AAAAGCTTATCTCGTGACACCAAAGCATCAATGT
65 ACTTTGATTTTATAAAAAATAG-TGGGA-AGAAAAGCTT-TCTCGTGAAACCAAAGCATCAATAT
* *
1197681 CATGTATCCTAATAAAG-GAAATGTATTTTAG
127 CATGTATCCTAATGAAGAG-AATGTGTTTTAG
* * * * *
1197712 GTTCCCAATGCTGAAAATAATGGAGACTATTATGAG-AATCGATGCTTGTCTTATTTA-AGGGAT
1 GTGCCTAAT-CTGAAAATAATGGAGACTATTATGAGTATTC-ATGTTTGTCTTATTTAGA-AGAT
* ** * * *
1197775 GAACTTTGATTTTA-AAGAAAATAATGCAAAGAAAA-CATTT-TCATGCAAAGCATAATCATCAA
63 GAACTTTGATTTTATAA-AAAATAGTGGGAAGAAAAGC-TTTCTCGTG-AAACCA-AAGCATCAA
* * * *
1197837 TATTATTTATCCTAGT-AAGAAGAATGTGTTTGT-T
124 TATCATGTATCCTAATGAAG-AGAATGTGTTT-TAG
** * * * * * *
1197871 GTGCCTAATCACAAAATGAACGAAGA-TCATTA-GTAGAATCCATGTTTGTCTCATTTA-AGGCA
1 GTGCCTAATCTGAAAAT-AATGGAGACT-ATTATG-AGTATTCATGTTTGTCTTATTTAGAAG-A
* * * * * * * * * *
1197933 CGAACTTGGACTTTACAAAAATTAGTGGGGAA-AAAACCTTTCTTGCGAAACTAAAGCACCAATA
62 TGAACTTTGATTTTATAAAAAATAGT-GGGAAGAAAAGCTTTCTCGTGAAACCAAAGCATCAATA
* *
1197997 TCATGTATCCTAATCAGAAGACAATGT-TTAT-G
126 TCATGTATCCTAAT--GAAGAGAATGTGTTTTAG
* * * * * *
1198029 GTGCCTAATCTTGAAAAGAATGGCGAATAGTATGAGTATTCATGCTTGTCTTATTT-GAGAGATA
1 GTGCCTAATC-TGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGA-AGATG
* * * ** ** * * * *
1198093 AACTTTCATTCTATGAAAAACGGTGTAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCACTGTC
64 AACTTTGATTTTATAAAAAATAGTGGGAAGAAAAGC-TTTCTCGTGAAACCAAAGCATCAATATC
* *
1198158 ATGTATCCTAATGAAGGGAATGTGTTTTTG
128 ATGTATCCTAATGAAGAGAATGTGTTTTAG
* * ** * *
1198188 GAT-CCTAATCTTGAAAAGAATGGAGACTGTTGCGA-TAATCGATATTTGTCTTATTTA-AGAGA
1 G-TGCCTAATC-TGAAAATAATGGAGACTATTATGAGTATTC-ATGTTTGTCTTATTTAGA-AGA
* * * ** ** *
1198250 TGAACTTTGA-TTT-TAAATAATATTGGGCAAAGAAAAGAATTTCAT-GCAAAAGAAAATCATCA
62 TGAACTTTGATTTTATAAAAAATAGTGGG--AAGAAAAG-CTTTC-TCGTGAAACCAAAGCATCA
* * * * *
1198312 ATATCATTTATTCTAAAGAGGAGAATGTG-TTTACA
123 ATATCATGTATCCTAATGAAGAGAATGTGTTTTA-G
* * * *
1198347 GTGCCTAAT-TATAAAATGAATGAAGA-TCATTACT-AGAATAT-ATGTTTGTCTCATTT-GAGA
1 GTGCCTAATCT-GAAAAT-AATGGAGACT-ATTA-TGAGTAT-TCATGTTTGTCTTATTTAGA-A
* * * * * **** *
1198407 CACGAACTTAGATCTTAT-AAAAAT--TGGTGAAAAAAAGCCTTTCTTACAAAACCAAAGCACCA
60 GATGAACTTTGATTTTATAAAAAATAGTGG-GAAGAAAAG-CTTTCTCGTGAAACCAAAGCATCA
* *** * *
1198469 ACATTGGGTATCCTAATG-AGAAGACTATG-TTTATG
123 ATATCATGTATCCTAATGAAG-AGAATGTGTTTTA-G
* * * * ** *
1198504 GTGCCTAATTCAGAAAAGAATGGGGATTAGAATGAGTATTCATGTTTGTCTTATTTA-AGAGATA
1 GTGCCTAA-TCTGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGA-AGATG
* * * *
1198568 AACTTTGATTCTATAAAAAA-ACGGTGGAAAGAAAAGCTTT-TCTTGCAACACCAAACCATCAAT
64 AACTTTGATTTTATAAAAAATA--GTGGGAAGAAAAGCTTTCTCGTG-AA-ACCAAAGCATCAAT
* *
1198631 GTCATGTATCCTAATGAAG-GAAATGTGTTTTTG
125 ATCATGTATCCTAATGAAGAG-AATGTGTTTTAG
** * *
1198664 GACCCCAATCGTGAAAAGAATGGAGA
1 GTGCCTAATC-TGAAAATAATGGAGA
1198690 TTGTTGCGAG
Statistics
Matches: 1726, Mismatches: 505, Indels: 349
0.67 0.20 0.14
Matches are distributed among these distances:
155 2 0.00
156 6 0.00
157 163 0.09
158 459 0.27
159 932 0.54
160 136 0.08
161 27 0.02
162 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
GTGCCTAATCTGAAAATAATGGAGACTATTATGAGTATTCATGTTTGTCTTATTTAGAAGATGAA
CTTTGATTTTATAAAAAATAGTGGGAAGAAAAGCTTTCTCGTGAAACCAAAGCATCAATATCATG
TATCCTAATGAAGAGAATGTGTTTTAG
Found at i:1198947 original size:20 final size:21
Alignment explanation
Indices: 1198914--1198956 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
1198904 TCCGAAAATT
1198914 TTACCCAGATGTATCGATACA
1 TTACCCAGATGTATCGATACA
1198935 TTACCCA-ATGTATCGATACA
1 TTACCCAGATGTATCGATACA
1198955 TT
1 TT
1198957 CAAGCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (21 bp):
TTACCCAGATGTATCGATACA
Found at i:1201419 original size:102 final size:104
Alignment explanation
Indices: 1201243--1201488 Score: 345
Period size: 102 Copynumber: 2.4 Consensus size: 104
1201233 TTAAGTTTCT
* * * *
1201243 CAATTTTTCATAATCGGGGGTACTCCAACCCCGGTTTTA-TTTCTAGAACACTAATTTTCCACAA
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCTAAAACACCAATTTTCCACAA
* *
1201307 TCGAGGATACTCCAACTCCGATTTTATTTTC-GAAACAC
66 TCGAGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
* * * *
1201345 CAATTTTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTTC-AAAACACCAATTTTCTATAA
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCTAAAACACCAATTTTCCACAA
* *
1201409 TCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACAC
66 TCGAGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
* *
1201448 AAATTTTTCACAATCGGGGATACTCCAACCCCGGCTTTATT
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATT
1201489 CCTAAAATAT
Statistics
Matches: 126, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
102 79 0.63
103 47 0.37
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (104 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCTAAAACACCAATTTTCCACAA
TCGAGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
Found at i:1201467 original size:52 final size:51
Alignment explanation
Indices: 1201243--1201480 Score: 282
Period size: 51 Copynumber: 4.6 Consensus size: 51
1201233 TTAAGTTTCT
* * * *
1201243 CAATTTTTCATAATCGGGGGTACTCCAACCCCGGTTTTA-TTTCTAGAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACAC
* * * * *
1201294 TAATTTTCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCGAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
* * *
1201345 CAATTTTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTTCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
* * * *
1201396 CAA-TTTTCTATAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACAC
1 CAATTTTTC-ACAATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACAC
*
1201448 AAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1201481 GCTTTATTCC
Statistics
Matches: 159, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
50 4 0.03
51 116 0.73
52 34 0.21
53 5 0.03
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
Found at i:1201512 original size:103 final size:100
Alignment explanation
Indices: 1201244--1201527 Score: 334
Period size: 102 Copynumber: 2.8 Consensus size: 100
1201234 TAAGTTTCTC
* * * *
1201244 AATTTTTCATAATCGGGGGTACTCCAACCCCGGTTTTATTTCTAGAACACTAATTTTCCACAATC
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTA-TTCTAAAACACTAATTTT-CATAATC
* * * *
1201309 GAGGATACTCCAACTCCGATTTTATTTTCGAAACACC
64 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACA
* * * *
1201346 AATTTTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTTCAAAACACCAATTTTCTATAATC
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCT-AAAACACTAATTTTC-ATAATC
*
1201411 GGGGATACTCCAACTCTGATTTTATTTCCAAAAACACA
64 GGGGATACTCCAACTCCGATTTTATTTCC-AAAACACA
* * * *
1201449 AATTTTTCACAATCGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTGATTTCTCATAATC
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATT-CTAAAACACTAATTT-TCATAATC
* *
1201514 AGGTATACTCCAAC
64 GGGGATACTCCAAC
1201528 CTCATTATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
101 4 0.03
102 77 0.50
103 70 0.45
104 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (100 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCTAAAACACTAATTTTCATAATCGG
GGATACTCCAACTCCGATTTTATTTCCAAAACACA
Found at i:1201607 original size:51 final size:51
Alignment explanation
Indices: 1201542--1201660 Score: 202
Period size: 51 Copynumber: 2.3 Consensus size: 51
1201532 TTATTTTCGA
*
1201542 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
* * *
1201593 GGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATC
1 GGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
1201644 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
1201661 ATTATTTTCA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
Found at i:1201713 original size:130 final size:130
Alignment explanation
Indices: 1201414--1201713 Score: 379
Period size: 130 Copynumber: 2.3 Consensus size: 130
1201404 TATAATCGGG
* * * * *
1201414 GATACTCCAACTCTGATTTTATTTCCAAAAACA-CAAATTTTTCACAATCGGGGATACTCCAACC
1 GATACTCCAACCCCGACTTTATTTCC-AAAACATC-GATTTCTCACAATCGGGGATACTCCAACC
* * *
1201478 CCGGCTTTATTCCTAAAATATTGATTTCTCATAATCAGGTATACTCCAACCTCATTATTTTCGAG
64 CCGGCCTTATTCCTAAAATATTGATTTCTCATAATCAGGGATACTCCAACCCCATTATTTTCGAG
*
1201543 GG
129 GA
* * * *
1201545 GATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCGGGGATACTTCAACCCC
1 GATACTCCAACCCCGACTTTATTTCCAAAACATCGATTTCTCACAATCGGGGATACTCCAACCCC
* *
1201610 GGCCTTATTTCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCATTATTTTC-ATGG
66 GGCCTTATTCCTAAAATATTGATTTCTCATAATCAGGGATACTCCAACCCCATTATTTTCGA-GG
1201674 A
130 A
* * * **
1201675 GATACTCTAATCCCGATTTTATTTTTAAAACATCGATTT
1 GATACTCCAACCCCGACTTTATTTCCAAAACATCGATTT
1201714 TCCATACTCC
Statistics
Matches: 144, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
129 1 0.01
130 121 0.84
131 22 0.15
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (130 bp):
GATACTCCAACCCCGACTTTATTTCCAAAACATCGATTTCTCACAATCGGGGATACTCCAACCCC
GGCCTTATTCCTAAAATATTGATTTCTCATAATCAGGGATACTCCAACCCCATTATTTTCGAGGA
Found at i:1216795 original size:18 final size:18
Alignment explanation
Indices: 1216759--1216819 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
1216749 CCGGAACAGT
* * *
1216759 CAAAAGTAAACACATAAA
1 CAAAAGTAAAAAAAAAAA
1216777 CAAAAGTAAAAAAAAAAA
1 CAAAAGTAAAAAAAAAAA
**
1216795 CAAAACACAAAAAAACAAAA
1 CAAAA-GTAAAAAAA-AAAA
1216815 CAAAA
1 CAAAA
1216820 AAAGTGCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
18 20 0.56
19 7 0.19
20 9 0.25
ACGTcount: A:0.77, C:0.15, G:0.03, T:0.05
Consensus pattern (18 bp):
CAAAAGTAAAAAAAAAAA
Found at i:1216806 original size:13 final size:13
Alignment explanation
Indices: 1216784--1216822 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
1216774 AAACAAAAGT
1216784 AAAA-AAAAAAAC
1 AAAACAAAAAAAC
1216796 AAAACACAAAAAAAC
1 -AAA-ACAAAAAAAC
1216811 AAAACAAAAAAA
1 AAAACAAAAAAA
1216823 GTGCAAAGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 4 0.17
15 8 0.33
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAACAAAAAAAC
Found at i:1216808 original size:15 final size:14
Alignment explanation
Indices: 1216787--1216822 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
1216777 CAAAAGTAAA
1216787 AAAAAAAACAAAAC
1 AAAAAAAACAAAAC
1216801 ACAAAAAAACAAAAC
1 A-AAAAAAACAAAAC
1216816 AAAAAAA
1 AAAAAAA
1216823 GTGCAAAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAACAAAAC
Found at i:1218143 original size:33 final size:33
Alignment explanation
Indices: 1218106--1218628 Score: 402
Period size: 33 Copynumber: 15.8 Consensus size: 33
1218096 ATATCTTCTC
* *
1218106 AAAGTCCACGACTCAGTGGCATC-TTTCCTTCTT
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTT-TT
* ** * *
1218139 AAAGTCCACGACTTAGTGGCATCTTGT-C--TC
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTTTT
* * **
1218169 AGAGTCCACAATTCAATGGCATCTCTTTCC----
1 AAAGTCCACAACTCCGTGGCATCT-TTTCCTTTT
* * **
1218199 AAAGTCCACGACTCAGTGGCATCTTTTCCTCCT
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTTTT
* *
1218232 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTTTT
* *
1218264 CAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGTCCACAACTCCGTGGCA-TC-TTTT-CCTTTT
* *
1218301 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTCCGTGGCATCTT-TTCCTTTT
* * *
1218335 -AAGTCCACGACTCCGTGGC-GC-CTT-CTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTTTT
*
1218364 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGTCCACAACTCCGTGGCA-TC-TTTT-CCTTTT
* *
1218401 AAAGTCCACAACTCTGTGGCATCTCTTTCC-TTC
1 AAAGTCCACAACTCCGTGGCATCT-TTTCCTTTT
*
1218434 AAAGTCCACAACTTCGTGGCACTCTTTTTCCCTTTT
1 AAAGTCCACAACTCCGTGGCA-TC-TTTT-CCTTTT
*
1218470 AAAGTCCACAACCCCGTGGCATCTTGTTCCTTTT
1 AAAGTCCACAACTCCGTGGCATCTT-TTCCTTTT
*
1218504 -AAGTCCACGACTCCGTGGCA-C-TTT-CTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTTTT
* *
1218533 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCATTT
1 -AAAGTCCACAACTCCGTGGCA-TC-TTTT-CCTTTT
* *
1218570 AAAGTCCACAACTTCGTGGCACCTTATTCCTTTT
1 AAAGTCCACAACTCCGTGGCATCTT-TTCCTTTT
1218604 -AAGTCCACAAC-CTCGTGGCATCTTT
1 AAAGTCCACAACTC-CGTGGCATCTTT
1218629 CACCCTTTTC
Statistics
Matches: 399, Mismatches: 54, Indels: 75
0.76 0.10 0.14
Matches are distributed among these distances:
29 15 0.04
30 44 0.11
31 38 0.10
32 30 0.08
33 102 0.26
34 51 0.13
35 24 0.06
36 81 0.20
37 14 0.04
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.33
Consensus pattern (33 bp):
AAAGTCCACAACTCCGTGGCATCTTTTCCTTTT
Found at i:1218177 original size:30 final size:29
Alignment explanation
Indices: 1218101--1218256 Score: 134
Period size: 30 Copynumber: 5.1 Consensus size: 29
1218091 TTCAAATATC
1218101 TTCTCAAAGTCCACGACTCAGTGGCATCT
1 TTCTCAAAGTCCACGACTCAGTGGCATCT
*
1218130 TTCCTTCTTAAAGTCCACGACTTAGTGGCATCT
1 TT-C-TC--AAAGTCCACGACTCAGTGGCATCT
* * * *
1218163 TGTCTCAGAGTCCACAATTCAATGGCATCT
1 T-TCTCAAAGTCCACGACTCAGTGGCATCT
1218193 CTT-TCCAAAGTCCACGACTCAGTGGCATCTT
1 -TTCT-CAAAGTCCACGACTCAGTGGCATC-T
* * * *
1218224 TTCCTCCTAAGTCCACAACTCCGTGGCACCT
1 TT-CT-CAAAGTCCACGACTCAGTGGCATCT
1218255 TT
1 TT
1218257 TTCTTTTCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
29 3 0.03
30 43 0.42
31 7 0.07
32 24 0.23
33 25 0.24
34 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.31
Consensus pattern (29 bp):
TTCTCAAAGTCCACGACTCAGTGGCATCT
Found at i:1218381 original size:100 final size:100
Alignment explanation
Indices: 1218199--1218628 Score: 432
Period size: 100 Copynumber: 4.3 Consensus size: 100
1218189 ATCTCTTTCC
* * * *
1218199 AAAGTCCACGACTCAGTGGCATCTTTTCCTCCTAAGTCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTCCTTCTAAGTCCACAACTCCGTGGCA-CTCTTTCTTTT
*
1218264 CAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTT
65 CAAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTT
* * * * *
1218301 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCGC-C-TTCTTTT
1 AAAGTCCACAACTCCGTGGCATCTT-TTCCTTCTAAGTCCACAACTCCGTGGCACTCTTTCTTTT
1218364 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
65 CAAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTT
* * *
1218401 AAAGTCCACAACTCTGTGGCATCTCTTTCCTTCAAAGTCCACAACTTCGTGGCACTCTTTTTCCC
1 AAAGTCCACAACTCCGTGGCATCT-TTTCCTTCTAAGTCCACAACTCCGTGGCACTC--TTT--C
* * *
1218466 TTTT-AAAGTCCACAACCCCGTGGCA-TCTTGTTCCTTTT
61 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * *
1218504 -AAGTCCACGACTCCGTGGCA-C-TTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT-TTCC
1 AAAGTCCACAACTCCGTGGCATCTTTTC-CTTCTAAGTCCACAACTCCGTGGCACTCTTTCTT--
* * * *
1218565 CATTTAAAGTCCACAACTTCGTGGCAC-CTTATTCCTTTT
63 --TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1218604 -AAGTCCACAAC-CTCGTGGCATCTTT
1 AAAGTCCACAACTC-CGTGGCATCTTT
1218629 CACCCTTTTC
Statistics
Matches: 280, Mismatches: 30, Indels: 36
0.81 0.09 0.10
Matches are distributed among these distances:
95 2 0.01
98 3 0.01
99 7 0.03
100 160 0.57
101 4 0.01
102 42 0.15
103 30 0.11
104 8 0.03
105 19 0.07
106 5 0.02
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (100 bp):
AAAGTCCACAACTCCGTGGCATCTTTTCCTTCTAAGTCCACAACTCCGTGGCACTCTTTCTTTTC
AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
Found at i:1218444 original size:69 final size:66
Alignment explanation
Indices: 1218104--1218628 Score: 429
Period size: 69 Copynumber: 7.9 Consensus size: 66
1218094 AAATATCTTC
* * * * ** *
1218104 TCAAAGTCCACGACTCAGTGGCA--TCTTTCCTTCTTAAAGTCCACGACTTAGTGGCATCTTGT-
1 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTT-TTAAAGTCCACAACTCCGTGGCATCTTTTC
1218166 C-
65 CT
* * ** * * * *
1218167 TCAGAGTCCACAATTCAATGGCATCTCTTTCC----AAAGTCCACGACTCAGTGGCATCTTTTCC
1 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGTCCACAACTCCGTGGCATCTTTTCC
1218228 T
66 T
* * * *
1218229 CCTAAGTCCACAACTCCGTGGCACCTTTTT-CTTTTCAAAGCCCATAACTCCGTGGCACTCTTTT
1 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAAGTCCACAACTCCGTGGCA-TC-TTT
1218293 TCCCTT
63 T-CC-T
* * * * **
1218299 TTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT-AAGTCCACGACTCCGTGGCGCCTTCTT-
1 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGTCCACAACTCCGTGGCATCTT-TTC
1218362 -T
65 CT
* *
1218363 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCTGTGGCATCTCTT
1 TCAAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTTAAAGTCCACAACTCCGTGGCATCT-TT
1218428 TCCT
63 TCCT
* *
1218432 TCAAAGTCCACAACTTCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCATCTTGT
1 TCAAAGTCCACAACTCCGTGGCAC-CTTTTT-CCTTTTAAAGTCCACAACTCCGTGGCATCTT-T
1218497 TCCT
63 TCCT
** * *
1218501 TTTAAGTCCACGACTCCGTGGCA-C--TTT-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTT-AAAGTCCACAACTCCGTGGCA-TC-TTT
1218562 TCCCAT
63 T-CC-T
* * *
1218568 TTAAAGTCCACAACTTCGTGGCACCTTATTCCTTTT-AAGTCCACAAC-CTCGTGGCATCTTT
1 TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGTCCACAACTC-CGTGGCATCTTT
1218629 CACCCTTTTC
Statistics
Matches: 379, Mismatches: 51, Indels: 60
0.77 0.10 0.12
Matches are distributed among these distances:
60 25 0.07
61 2 0.01
62 22 0.06
63 24 0.06
64 41 0.11
65 19 0.05
66 27 0.07
67 50 0.13
68 13 0.03
69 118 0.31
70 28 0.07
71 10 0.03
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.33
Consensus pattern (66 bp):
TCAAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGTCCACAACTCCGTGGCATCTTTTCC
T
Found at i:1218455 original size:169 final size:168
Alignment explanation
Indices: 1218232--1218648 Score: 622
Period size: 169 Copynumber: 2.5 Consensus size: 168
1218222 TTTTCCTCCT
* * * * *
1218232 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCC
1 AAGTCCACAACTCTGTGGCACC-TTTTC-CTTCAAAGTCCACAACTTCGTGGCACTCTTTTTCCC
*
1218297 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCGCCTTCTT
64 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTT
*
1218362 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
129 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCATTTA
*
1218402 AAGTCCACAACTCTGTGGCATCTCTTTCCTTCAAAGTCCACAACTTCGTGGCACTCTTTTTCCCT
1 AAGTCCACAACTCTGTGGCACCT-TTTCCTTCAAAGTCCACAACTTCGTGGCACTCTTTTTCCCT
* *
1218467 TTTAAAGTCCACAACCCCGTGGCATCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACTTTCTTT
65 TTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTT
1218532 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCATTTA
130 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCATTTA
** * **
1218571 AAGTCCACAACT-TCGTGGCACCTTATTCCTTTTAAGTCCACAACCTCGTGGCA-TCTTTCACCC
1 AAGTCCACAACTCT-GTGGCACCTT-TTCCTTCAAAGTCCACAACTTCGTGGCACTCTTTTTCCC
*
1218634 TTTTCAAAGCCCACA
64 TTTT-AAAGTCCACA
1218649 CAAGTAGGTG
Statistics
Matches: 226, Mismatches: 17, Indels: 9
0.90 0.07 0.04
Matches are distributed among these distances:
168 14 0.06
169 188 0.83
170 24 0.11
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (168 bp):
AAGTCCACAACTCTGTGGCACCTTTTCCTTCAAAGTCCACAACTTCGTGGCACTCTTTTTCCCTT
TTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTT
CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCATTTA
Found at i:1218667 original size:32 final size:32
Alignment explanation
Indices: 1218630--1218790 Score: 225
Period size: 32 Copynumber: 5.0 Consensus size: 32
1218620 GGCATCTTTC
*
1218630 ACCCTTTTCAAAGCCCACACAAGTAGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1218662 ACCCTTTCCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
**
1218694 ACCCTTCCCAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
*
1218726 ACCTTTTTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTC-AAAGCCCACACAAGTTGGTGGCA
**
1218759 ACCC-CCTCAAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTC-AAAGCCCACACAAGTTGGTGGCA
1218791 TCTGCCTTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
32 91 0.78
33 26 0.22
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (32 bp):
ACCCTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1218772 original size:65 final size:63
Alignment explanation
Indices: 1218638--1218790 Score: 227
Period size: 65 Copynumber: 2.4 Consensus size: 63
1218628 TCACCCTTTT
*
1218638 CAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAAAGCCCACACAAGTCGGTGGCAACCCTTCC
1 CAAAGCCCACACAAGTTGGTGGCAACCCTTTCCAAAGCCCACACAAGTCGGTGGCAACCC-TCC
* * *
1218702 CAAAGCCCACACAAGTTGGTGGCAACCTTTTTCTAAAGCCCACACAAGTTGGTGGCAACCC-CC
1 CAAAGCCCACACAAGTTGGTGGCAACC-CTTTCCAAAGCCCACACAAGTCGGTGGCAACCCTCC
1218765 TCAAAAGCCCACACAAGTTGGTGGCA
1 -C-AAAGCCCACACAAGTTGGTGGCA
1218791 TCTGCCTTTA
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
63 2 0.02
64 27 0.33
65 53 0.65
ACGTcount: A:0.30, C:0.34, G:0.20, T:0.16
Consensus pattern (63 bp):
CAAAGCCCACACAAGTTGGTGGCAACCCTTTCCAAAGCCCACACAAGTCGGTGGCAACCCTCC
Found at i:1218910 original size:43 final size:43
Alignment explanation
Indices: 1218795--1219931 Score: 766
Period size: 43 Copynumber: 24.1 Consensus size: 43
1218785 GTGGCATCTG
* *
1218795 CCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
1218838 CCTTGTCTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 -C----C-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
1218887 CCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGACA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
1218930 TCTTCATTTATAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--C--TT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
1218979 CCTTTAAGTCCAATATTGCTGGCCTTAAATCAGTATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
1219022 TCTTCATCTTTAAGTCCAATGTAGCAGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
1219071 CCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
1219114 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
1219163 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
1219206 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1219255 CCTTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCA
1 CCTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGG---CA
* * *
1219301 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCTGCACATTGGCA
1 -C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
** * *
1219347 CCTCCAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGACGTCTTTGTCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT---G-----G-CA
* * * * *
1219399 TCTTTAAGTCTAATGTAGCTGGCCTTGAAACAGCACATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
** * *
1219442 CCTCCAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT---G-----G-CA
* * *
1219494 TCTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
** *
1219538 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT---G-----G-CA
* * *
1219590 TCTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCGCT-TTGGCA
1 -CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGC-ATATTGGCA
** * * *
1219634 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCGCCTT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-G-C-A
** *
1219681 CGTCATTTTTAAAACCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 C--C---TTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
1219730 CCCTCATCTTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--C-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
1219780 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGC
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-A
* *
1219824 CTTTGTCATATTGAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGT
1 C-----C-T-TT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-A
* *
1219876 CTTTGTCATATTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG
1 C-----C---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1219927 CCTTT
1 CCTTT
1219932 GTCATCTTTA
Statistics
Matches: 889, Mismatches: 111, Indels: 187
0.75 0.09 0.16
Matches are distributed among these distances:
42 1 0.00
43 349 0.39
44 14 0.02
45 7 0.01
46 12 0.01
47 5 0.01
48 6 0.01
49 223 0.25
50 39 0.04
51 11 0.01
52 120 0.13
53 99 0.11
54 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:1218952 original size:92 final size:92
Alignment explanation
Indices: 1218795--1220034 Score: 1407
Period size: 92 Copynumber: 13.0 Consensus size: 92
1218785 GTGGCATCTG
* * *
1218795 CCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-GTCTTTTAAGTCCAATG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC-TTTAAGTCCAATG
*
1218859 TAGCTGGCCTTGAATCAGCATATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
1218887 CCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGACATCTTCAT-TTATAAGTCCAATG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT-TAAGTCCAATG
1218951 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
1218979 CCTTTAAGTCCAATATTGCTGGCCTTAAATCAGTATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
*
1219044 AGCAGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
1219071 CCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
*
1219136 AGCTGGCCTTGAATTAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
1219163 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1219228 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
1219255 CCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
*
1219320 AGCTGGCCTTGAATCTGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
** * * * *
1219347 CCTCCAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGACGTCTTTGTCATCTTTAAGTCTAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC--T-TCATCTTTAAGTCCAA
*
1219412 TGTAGCTGGCCTTGAAACAGCACATTGGCA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
** * * *
1219442 CCTCCAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-GCATCT-TCATC-TTTAAGTCCA
1219507 ATGTAGCTGGCCTTGAATCAGCACATTGGCA
62 ATGTAGCTGGCCTTGAATCAGCACATTGGCA
** * *
1219538 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-GCATCT-TCATC-TTTAAGTCCA
* *
1219603 ATGTAGCTGGCCTTGAATCAGCGCTTTGGCA
62 ATGTAGCTGGCCTTGAATCAGCACATTGGCA
** * * * * **
1219634 CCTCCAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCGCCTTCGTCATTTTTAAAACCCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-G-CATCTTCATCTTT-AAGTCCA
* * *
1219699 ATATCGCTGGCCTTGAATCAGCATATTGGCA
62 ATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * *
1219730 CCCTCATCTTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGT
1 ----C--C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGT
* * * *
1219789 CCAATATCGCTGGCCTTGAATCAGCATATTGGCGC
59 CCAATGTAGCTGGCCTTGAATCAGCACATTGGC-A
* *
1219824 CTTTGTCATATTGAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATATTT
1 C-----C-T-TT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC--T-TCATCTTT
* * *
1219889 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
55 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATT---G-----G-CA
* * *
1219936 TCTTTAAGTCCAATATCGCTCGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC--T-TCATCTTTAAGTCCAA
*
1220001 TGTCGCTGGCCTTGAATCAGCACATTGGCA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
1220031 CCTT
1 CCTT
1220035 CATCTTTAAC
Statistics
Matches: 1023, Mismatches: 83, Indels: 81
0.86 0.07 0.07
Matches are distributed among these distances:
90 1 0.00
91 2 0.00
92 465 0.45
93 41 0.04
94 5 0.00
95 129 0.13
96 212 0.21
97 4 0.00
100 2 0.00
101 2 0.00
102 3 0.00
103 31 0.03
104 119 0.12
105 2 0.00
106 1 0.00
107 2 0.00
112 1 0.00
113 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:1219778 original size:146 final size:145
Alignment explanation
Indices: 1218981--1220041 Score: 936
Period size: 135 Copynumber: 7.4 Consensus size: 145
1218971 CATTGGCACC
* * * * *
1218981 TTTAAGTCCAATATTGCTGGCCTTAAATCAGTATATTGGCATCTTCATC-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATGTC
* ** *
1219045 GCAGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
* * *
1219110 -G-GCATCT-TCATC
131 GGCGCCTTTGTCATT
* * * * * *
1219122 TTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--C-TTTAAGTCCAATATA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATGTC
* * * *
1219180 GCTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCACATTGGCACC-TC--C---AAGTCCAATATCGCTGGCCTTGAATCAG
* *
1219245 CACATTGGC-AC-----C---
125 CATATTGGCGCCTTTGTCATT
* * *
1219257 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCATCATC-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATGTC
* *
1219321 GCTGGCCTTGAATCTGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATTAGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
* * *
1219386 GACGTCTTTGTCATC
131 GGCGCCTTTGTCATT
* * * * * **
1219401 TTTAAGTCTAATGTAGCTGGCCTTGAAACAGCACATTGGCACC-TC--C----AAGTCCAACATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATGTC
* * * *
1219459 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAATGTAGCTGGCCTTGAA
66 GCTGGCCTTGAATCAGCACATTGGCACC----TC--C----AAGTCCAATATCGCTGGCCTTGAA
* *
1219524 TCAGCACATTGGCACC----TC---
121 TCAGCATATTGGCGCCTTTGTCATT
* *
1219542 --CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTTAAGTCCAAT
* * * *
1219605 GTAGCTGGCCTTGAATCAGCGCTTTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGTAT
63 GTCGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCAT
*
1219670 ATTGGCGCCTTCGTCATT
128 ATTGGCGCCTTTGTCATT
** * *
1219688 TTTAAAACCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAATGT
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATGT
**
1219753 CGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
65 CGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
1219818 TGGCGCCTTTGTCATA
130 TGGCGCCTTTGTCATT
* ** ** *
1219834 TTGAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATATTTAAGTCCAATA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-T-TTTAAGTCCAATG
* * *
1219899 TCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATCGCTCGCCTTGA
64 TCGCTGGCCTTGAATCAGCACATTGGCACC----TC--C---AAGTCCAATATCGCTGGCCTTGA
* *
1219964 ATCAGCATATTGGCGTCTTTGTCATC
120 ATCAGCATATTGGCGCCTTTGTCATT
* *
1219990 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
1220042 AACATTCCTA
Statistics
Matches: 748, Mismatches: 108, Indels: 115
0.77 0.11 0.12
Matches are distributed among these distances:
135 108 0.14
136 2 0.00
137 1 0.00
138 36 0.05
139 70 0.09
140 2 0.00
141 108 0.14
142 3 0.00
143 7 0.01
144 40 0.05
145 42 0.06
146 95 0.13
147 39 0.05
148 33 0.04
149 70 0.09
151 1 0.00
154 2 0.00
155 1 0.00
156 88 0.12
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (145 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTTAAGTCCAATGTC
GCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
GGCGCCTTTGTCATT
Found at i:1219863 original size:52 final size:52
Alignment explanation
Indices: 1219782--1220034 Score: 425
Period size: 52 Copynumber: 4.9 Consensus size: 52
1219772 CATTGGCACC
1219782 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATA
* *
1219834 TTGAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATA
*
1219886 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATA
* * *
1219938 TTTAAGTCCAATATCGCTCGCCTTGAATCAGCATATTGGCGTCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATA
* * *
1219990 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
1220035 CATCTTTAAC
Statistics
Matches: 189, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 189 1.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (52 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATA
Found at i:1220748 original size:19 final size:20
Alignment explanation
Indices: 1220712--1220760 Score: 91
Period size: 19 Copynumber: 2.5 Consensus size: 20
1220702 CAACGATTTA
1220712 TATCGATACATAAAGTGTTG
1 TATCGATACATAAAGTGTTG
1220732 TATCGATACAT-AAGTGTTG
1 TATCGATACATAAAGTGTTG
1220751 TATCGATACA
1 TATCGATACA
1220761 ATGTAAGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATAAAGTGTTG
Found at i:1220800 original size:13 final size:13
Alignment explanation
Indices: 1220782--1220806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1220772 TGCCAAAAAA
1220782 TGTATCGATACAT
1 TGTATCGATACAT
1220795 TGTATCGATACA
1 TGTATCGATACA
1220807 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1220922 original size:50 final size:51
Alignment explanation
Indices: 1220815--1220941 Score: 195
Period size: 50 Copynumber: 2.5 Consensus size: 51
1220805 CACTGATCTT
*
1220815 TGTATCGATACATGCAGGTAAATTTGCCCAGATGTATCGATACACTATAAAG
1 TGTATCGATACATGCAGGCAAATTTGCCCA-ATGTATCGATACACTATAAAG
* *
1220867 GGTATCAATACATGCAGGCAAATTTGCCC-ATGTATCGATACACTATGAAA-
1 TGTATCGATACATGCAGGCAAATTTGCCCAATGTATCGATACACTAT-AAAG
1220917 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1220942 TCATATTTCG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
50 40 0.58
51 3 0.04
52 26 0.38
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (51 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAATGTATCGATACACTATAAAG
Found at i:1227867 original size:12 final size:12
Alignment explanation
Indices: 1227850--1227898 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
1227840 GCACACAAAC
*
1227850 AAAAGTCAAAAA
1 AAAAGACAAAAA
*
1227862 AAAAG-TAAAAA
1 AAAAGACAAAAA
1227873 AAAA-ACAAAAA
1 AAAAGACAAAAA
*
1227884 AAAACACAAAAA
1 AAAAGACAAAAA
1227896 AAA
1 AAA
1227899 GGTGCAAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 18 0.55
12 15 0.45
ACGTcount: A:0.84, C:0.08, G:0.04, T:0.04
Consensus pattern (12 bp):
AAAAGACAAAAA
Found at i:1227882 original size:10 final size:10
Alignment explanation
Indices: 1227869--1227898 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
1227859 AAAAAAAGTA
1227869 AAAAAAAAAC
1 AAAAAAAAAC
1227879 AAAAAAAAAC
1 AAAAAAAAAC
1227889 ACAAAAAAAA
1 A-AAAAAAAA
1227899 GGTGCAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1227887 original size:11 final size:11
Alignment explanation
Indices: 1227856--1227898 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
1227846 AAACAAAAGT
*
1227856 CAAAAAAAAAG
1 CAAAAAAAAAA
*
1227867 TAAAAAAAAAA
1 CAAAAAAAAAA
1227878 CAAAAAAAAACA
1 CAAAAAAAAA-A
1227890 CAAAAAAAA
1 CAAAAAAAA
1227899 GGTGCAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.02
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:1227894 original size:22 final size:22
Alignment explanation
Indices: 1227842--1227898 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
1227832 AAAAGTAAGC
**
1227842 ACACAAACAAAAGTCAAAAAAAA
1 ACACAAA-AAAAAACAAAAAAAA
*
1227865 AGTA-AAAAAAAAACAAAAAAAA
1 A-CACAAAAAAAAACAAAAAAAA
1227887 ACACAAAAAAAA
1 ACACAAAAAAAA
1227899 GGTGCAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 1 0.04
22 22 0.79
23 4 0.14
24 1 0.04
ACGTcount: A:0.81, C:0.12, G:0.04, T:0.04
Consensus pattern (22 bp):
ACACAAAAAAAAACAAAAAAAA
Found at i:1228167 original size:20 final size:21
Alignment explanation
Indices: 1228138--1228180 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
1228128 GTTCTTTTCC
* *
1228138 AAAGACAAAAA-AAAAGAGAA
1 AAAGAAAAAAACAAAACAGAA
1228158 AAAGAAAAAAACAAAACAGAA
1 AAAGAAAAAAACAAAACAGAA
1228179 AA
1 AA
1228181 TCTCAGTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.81, C:0.07, G:0.12, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAAACAAAACAGAA
Found at i:1228238 original size:8 final size:8
Alignment explanation
Indices: 1228225--1228264 Score: 62
Period size: 8 Copynumber: 4.9 Consensus size: 8
1228215 TCTTCACAAA
1228225 AAAAAAAC
1 AAAAAAAC
1228233 AAAAAAAC
1 AAAAAAAC
*
1228241 AAAAACAAA
1 AAAAA-AAC
1228250 AAAAAAAC
1 AAAAAAAC
1228258 AAAAAAA
1 AAAAAAA
1228265 AAGGAAAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:1228273 original size:1 final size:1
Alignment explanation
Indices: 1228222--1228266 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
1228212 TAATCTTCAC
* * * *
1228222 AAAAAAAAAACAAAAAAACAAAAACAAAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1228267 GGAAAAACCC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1228273 original size:11 final size:11
Alignment explanation
Indices: 1228220--1228266 Score: 67
Period size: 11 Copynumber: 4.0 Consensus size: 11
1228210 CCTAATCTTC
1228220 ACAAAAAAAAA
1 ACAAAAAAAAA
1228231 ACAAAAAAACAAAA
1 AC--AAAAA-AAAA
1228245 ACAAAAAAAAA
1 ACAAAAAAAAA
1228256 ACAAAAAAAAA
1 ACAAAAAAAAA
1228267 GGAAAAACCC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 17 0.52
12 5 0.15
13 5 0.15
14 6 0.18
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:1228274 original size:17 final size:17
Alignment explanation
Indices: 1228223--1228266 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
1228213 AATCTTCACA
*
1228223 AAAAAAAAACAAAAAAAC
1 AAAAACAAA-AAAAAAAC
1228241 AAAAACAAAAAAAAAAC
1 AAAAACAAAAAAAAAAC
1228258 AAAAA-AAAA
1 AAAAACAAAA
1228267 GGAAAAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.16
17 13 0.52
18 8 0.32
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAAAAAAAC
Found at i:1229245 original size:31 final size:31
Alignment explanation
Indices: 1229210--1229811 Score: 373
Period size: 31 Copynumber: 18.9 Consensus size: 31
1229200 CTTCAAATAC
*
1229210 CTTTTCAAAGTCCACGACTCCGTGGCACCTT
1 CTTTTCAAAGTCCACAACTCCGTGGCACCTT
* *
1229241 CTTTTCAAAGCCCACAACTCCGTGGCATTCTTTGTT
1 CTTTTCAAAGTCCACAACTCCGTGGCA--C---CTT
* * * ** * *
1229277 CTTTT-TAAGTTCACGACTTAGTGGTATCTT
1 CTTTTCAAAGTCCACAACTCCGTGGCACCTT
* * * *
1229307 -GTCTCAAAGTCCACGACTCAGTGGCA----
1 CTTTTCAAAGTCCACAACTCCGTGGCACCTT
*
1229333 ----TCAAAGTCCACGACTCCGTGGCACCTTTTT
1 CTTTTCAAAGTCCACAACTCCGTGGCACC---TT
*
1229363 CTTTTCAAAGTCCACGACTCCGTGGCACCTT
1 CTTTTCAAAGTCCACAACTCCGTGGCACCTT
* * *
1229394 CTTTTCAAAGCCCACAACTCTGTGGCATCTTTTT
1 CTTTTCAAAGTCCACAACTCCGTGGCA-C--CTT
*
1229428 CCATTTT-AAAGCCCACAACTCCGTGGCACTCTT
1 -C-TTTTCAAAGTCCACAACTCCGTGGCAC-CTT
* *
1229461 TTTCCTTCTAAGTCCACAACTCCGTGGCACC--
1 CTT--TTCAAAGTCCACAACTCCGTGGCACCTT
* *
1229492 CGTTT--AAGCCCAC-ACTCCGTGGCACTCTT
1 CTTTTCAAAGTCCACAACTCCGTGGCAC-CTT
*
1229521 -TTTCCGTCTAAGTCCACAACTCCGTGGCACCTT
1 CTTT---TCAAAGTCCACAACTCCGTGGCACCTT
*
1229554 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CTTTTCAAAGTCCACAACTCCGTGGCAC-C---TT
*
1229589 CCCTTTT-AAAGTCCACAACTCCGTGGCACTTGTT
1 --CTTTTCAAAGTCCACAACTCCGTGGCAC--CTT
*
1229623 CCTTTT--AAGTCCACGACTCCGTGGCACCTT
1 -CTTTTCAAAGTCCACAACTCCGTGGCACCTT
*
1229653 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CTTTTCAAAGTCCACAACTCCGTGGCAC-C---TT
* * *
1229688 CCCTTTT-GAAGTCCATAACCCCGTGGCACCTT
1 --CTTTTCAAAGTCCACAACTCCGTGGCACCTT
* ** *
1229720 GTTCCTTTTAAGTCCACGACTCCGTGGCACCTT
1 CTT--TTCAAAGTCCACAACTCCGTGGCACCTT
* *
1229753 CCTTTCAAAGTCCACGACTCCGTGGCACCTT
1 CTTTTCAAAGTCCACAACTCCGTGGCACCTT
*
1229784 CTTTTCAAAGCCCACAACTCCGTGGCAC
1 CTTTTCAAAGTCCACAACTCCGTGGCAC
1229812 TCTTTTTCCC
Statistics
Matches: 461, Mismatches: 57, Indels: 106
0.74 0.09 0.17
Matches are distributed among these distances:
23 22 0.05
26 12 0.03
27 8 0.02
28 2 0.00
29 9 0.02
30 23 0.05
31 147 0.32
32 27 0.06
33 45 0.10
34 65 0.14
35 40 0.09
36 50 0.11
37 11 0.02
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (31 bp):
CTTTTCAAAGTCCACAACTCCGTGGCACCTT
Found at i:1229340 original size:23 final size:23
Alignment explanation
Indices: 1229310--1229355 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1229300 GTATCTTGTC
1229310 TCAAAGTCCACGACTCAGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
*
1229333 TCAAAGTCCACGACTCCGTGGCA
1 TCAAAGTCCACGACTCAGTGGCA
1229356 CCTTTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (23 bp):
TCAAAGTCCACGACTCAGTGGCA
Found at i:1229513 original size:60 final size:61
Alignment explanation
Indices: 1229431--1229817 Score: 304
Period size: 67 Copynumber: 6.1 Consensus size: 61
1229421 TCTTTTTCCA
1229431 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
* *
1229493 GTTTAAGCCCAC-ACTCCGTGGCACTCTTTTTCCGTCTAAGTCCACAACTCCGTGGCACCTTC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACC--C
*
1229555 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACTT
1 TTTT--AAGCCCACAACTCCGTGGCACTCTTTTT-CCTTCT-AAGTCCACAACTCCGTGGCAC--
1229620 GTTCC
60 ---CC
* * * * *
1229625 TTTTAAGTCCACGACTCCGTGGCAC-CTTCTT--TTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCA-------
1229687 TCCC
59 -CCC
* * * * * *
1229691 TTTTGAAGTCCATAACCCCGTGGCAC-CTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCC
1 TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCA-C--CC
* * * * * * *
1229755 TTTCAAAGTCCACGACTCCGTGGCAC-CTTCTT--TTCAAAGCCCACAACTCCGTGGCACTC
1 TTT-TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
1229814 TTTT
1 TTTT
1229818 TCCCTTTTAA
Statistics
Matches: 268, Mismatches: 31, Indels: 56
0.75 0.09 0.16
Matches are distributed among these distances:
59 4 0.01
60 46 0.17
61 9 0.03
62 28 0.10
63 19 0.07
64 38 0.14
65 19 0.07
66 10 0.04
67 49 0.18
68 19 0.07
69 20 0.07
70 5 0.02
71 1 0.00
72 1 0.00
ACGTcount: A:0.19, C:0.36, G:0.14, T:0.31
Consensus pattern (61 bp):
TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
Found at i:1229642 original size:99 final size:100
Alignment explanation
Indices: 1229501--1229850 Score: 464
Period size: 99 Copynumber: 3.5 Consensus size: 100
1229491 CCGTTTAAGC
* * *
1229501 CCAC-ACTCCGTGGCACTCTTTTTCCGTCTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGC
1 CCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGC
1229565 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGT
65 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGT
*
1229601 CCACAACTCCGTGGCA-CTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCC
1 CCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCC
*
1229665 CACAACTCCGTGGCACTCTTTTTCCCTTTTGAAGT
66 CACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGT
* * * * *
1229700 CCATAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTC
1 CCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCC
* *
1229765 CACGACTCCGTGGCAC-C---TT--CTTTTCAAAGC
66 CACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGT
* * *
1229795 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGGGGCACCTT
1 CCACAACTCCGTGGCAC-CTTGTT-CCTTTT-AAGTCCACAACTCCGTGGCACCTT
1229851 GTTCCTTTTA
Statistics
Matches: 226, Mismatches: 18, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
94 5 0.02
95 18 0.08
96 7 0.03
97 6 0.03
98 21 0.09
99 93 0.41
100 65 0.29
101 11 0.05
ACGTcount: A:0.19, C:0.36, G:0.15, T:0.30
Consensus pattern (100 bp):
CCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGCC
CACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGT
Found at i:1229783 original size:131 final size:131
Alignment explanation
Indices: 1229336--1229878 Score: 666
Period size: 131 Copynumber: 4.2 Consensus size: 131
1229326 AGTGGCATCA
* *
1229336 AAGTCCACGACTCCGTGGCACCTTTTTCTTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACC---TTCCTTT-AAAGTCCACGACTCCGTGGCACCTTCTTTTCA
* * *
1229401 AAGCCCACAACTCTGTGGCA-TCTTTTTCCATTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
62 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTC
*
1229465 CTTCT
127 CTTTT
* * *
1229470 AAGTCCACAACTCCGTGGCACC--CGTTT-AAGCCCAC-ACTCCGTGGCACTCTT-TTTCCGTCT
1 AAGTCCACAACTCCGTGGCACCTTCCTTTAAAGTCCACGACTCCGTGGCAC-CTTCTTT---TCA
* *
1229530 AAGTCCACAACTCCGTGGCAC-C---TT--CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
62 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGCCCACAACTCCGTGGCACTCTTGTT
1229589 CCCTTTT
126 -CCTTTT
* *
1229596 AAAGTCCACAACTCCGTGGCACTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAA
1 -AAGTCCACAACTCCGTGGCAC--CTTCCTTTAAAGTCCACGACTCCGTGGCACCTTCTTTTCAA
* * * *
1229661 AGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTGAAGTCCATAACCCCGTGGCAC-CTTGTTCC
63 AGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCC
1229725 TTTT
128 TTTT
*
1229729 AAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
1 AAGTCCACAACTCCGTGGCACCTTCCTTT-AAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAG
*
1229794 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGGGGCAC-CTTGTTCCTT
65 CCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTT
1229858 TT
130 TT
* *
1229860 AAGT-TACAACTTCGTGGCA
1 AAGTCCACAACTCCGTGGCA
1229879 TCTTTCACCC
Statistics
Matches: 358, Mismatches: 29, Indels: 48
0.82 0.07 0.11
Matches are distributed among these distances:
124 4 0.01
125 29 0.08
126 22 0.06
127 31 0.09
129 25 0.07
130 41 0.11
131 104 0.29
132 30 0.08
133 21 0.06
134 28 0.08
135 18 0.05
136 5 0.01
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACAACTCCGTGGCACCTTCCTTTAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGC
CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTT
T
Done.