Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 8 of 16
Found at i:1229878 original size:230 final size:221
Alignment explanation
Indices: 1229333--1229878 Score: 633
Period size: 230 Copynumber: 2.4 Consensus size: 221
1229323 CTCAGTGGCA
* * * * * *
1229333 TCAAAGTCCACGACTCCGTGGCAC-CTTTTT--CTTTTCAAAGTCCACGACTCCGTGGCAC--CT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGCCCACAACTCCGGGGCACTTGT
* * *
1229393 T-CTTTTCAAAGCCCACAACTCTGTGGCATCTTTTTCCATTTTAAAGCCCACAACTCCGTGGCAC
65 TCCTTTT--AAGTCCACAACTCCGTGGCA-C--CTT-C-TTTTAAAGCCCACAACTCCGTGGCAC
*
1229457 TCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTTTAAGCCCACACTCCGTGGCACTCTTT
123 TCTTTTTCCTTCTAAGTCCACAACCCCGTGGCACCCGTTTAAGCCCACACTCCGTGGCACTC--T
*
1229522 TTCCGTCTAAGTCCACAACTCCGTGGCACCTTCTTT
186 TTCCGTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* *
1229558 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGCACTTGTT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGGGGCACTTGTT
*
1229623 CCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
66 CCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTT
* * * *
1229688 CCCTTTTGAAGTCCATAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C-
130 -CCTTCT-AAGTCCACAACCCCGTGGCA-C-----CCGTTTAAGCCCAC-ACTCCGTGGCACTCT
* *
1229751 TTCCTTTCAAAGTCCACGACTCCGTGGCACCTTCTTT
186 TTCC-GTCAAAGTCCACAACTCCGTGGCACCTTCTTT
1229788 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGGGGCACCTTGT
1 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGGGGCA-CTTGT
* *
1229853 TCCTTTTAAGT-TACAACTTCGTGGCA
65 TCCTTTTAAGTCCACAACTCCGTGGCA
1229879 TCTTTCACCC
Statistics
Matches: 282, Mismatches: 21, Indels: 31
0.84 0.06 0.09
Matches are distributed among these distances:
223 4 0.01
224 30 0.11
225 29 0.10
226 24 0.09
227 23 0.08
228 22 0.08
229 6 0.02
230 103 0.37
231 16 0.06
232 13 0.05
233 12 0.04
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.31
Consensus pattern (221 bp):
TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGGGGCACTTGTT
CCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CTTCTAAGTCCACAACCCCGTGGCACCCGTTTAAGCCCACACTCCGTGGCACTCTTTCCGTCAAA
GTCCACAACTCCGTGGCACCTTCTTT
Found at i:1229922 original size:32 final size:32
Alignment explanation
Indices: 1229885--1230092 Score: 276
Period size: 32 Copynumber: 6.5 Consensus size: 32
1229875 GGCATCTTTC
1229885 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
* * * *
1229917 ACCCTTCTCAAAGCCCACACAAGTCAGTTGCA
1 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
* *
1229949 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
* *
1229981 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
* * *
1230013 ACCCTCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
* *
1230045 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTT-TTTAAAGCCCACACAAGTCGGTGGCA
1230078 ACCC-TTTT-AAGCCCA
1 ACCCTTTTTAAAGCCCA
1230093 ATATCGCTGG
Statistics
Matches: 159, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
30 7 0.04
31 2 0.01
32 122 0.77
33 28 0.18
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.19
Consensus pattern (32 bp):
ACCCTTTTTAAAGCCCACACAAGTCGGTGGCA
Found at i:1229965 original size:64 final size:64
Alignment explanation
Indices: 1229885--1230083 Score: 319
Period size: 64 Copynumber: 3.1 Consensus size: 64
1229875 GGCATCTTTC
* * * *
1229885 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCAGTTGCA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1229949 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
* *
1230013 ACCC-TCTCTAAAGCCCACACAAGTTGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACACAAGTCGGTGGC
1230077 A
64 A
1230078 ACCCTT
1 ACCCTT
1230084 TTAAGCCCAA
Statistics
Matches: 126, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
63 4 0.03
64 94 0.75
65 27 0.21
66 1 0.01
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.19
Consensus pattern (64 bp):
ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCA
Found at i:1229994 original size:96 final size:97
Alignment explanation
Indices: 1229885--1230083 Score: 321
Period size: 96 Copynumber: 2.1 Consensus size: 97
1229875 GGCATCTTTC
* * *
1229885 ACCCTTTTTAAAGCCCACACAAGTCGGTGGCAACCCT-TCTCAAAGCCCACACAAGTCAGTTGCA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTCT-AAAGCCCACACAAGTCAGTGGCA
*
1229949 ACCCTTCTC-AAAGCCCACACAAGTCGGTGGCA
65 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCA
**
1229981 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTTGGTGGCAA
1 ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCAGTGGCAA
1230046 CCATTCTCTAAAGCCCACACAAGTCGGTGGCA
66 CCATTCTCTAAAGCCCACACAAGTCGGTGGCA
1230078 ACCCTT
1 ACCCTT
1230084 TTAAGCCCAA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
96 63 0.66
97 32 0.34
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.19
Consensus pattern (97 bp):
ACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCAGTGGCAA
CCATTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:1230143 original size:49 final size:49
Alignment explanation
Indices: 1230083--1230609 Score: 564
Period size: 43 Copynumber: 11.1 Consensus size: 49
1230073 TGGCAACCCT
* *
1230083 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
1230132 TTTAAGTCCAATGTAC-CTGGCCATGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATAT-CGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
*
1230175 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
** * *
1230224 TTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
*
1230267 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* ** * * * *
1230316 TTTAAGACCAACGTAGCTGGCCTTGAATCATCACATTGGCAAC-TC--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
1230362 ---AAGTCCAATATTGCTAGCCTTGAATCAGCATATTGGCACCCTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
1230408 TTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
*
1230452 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
*
1230504 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTCTATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-CT-TCATC
*
1230556 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1230605 TTTAA
1 TTTAA
1230610 CATTCCTAAG
Statistics
Matches: 401, Mismatches: 45, Indels: 64
0.79 0.09 0.13
Matches are distributed among these distances:
42 1 0.00
43 143 0.36
44 3 0.01
45 2 0.00
46 3 0.01
47 2 0.00
48 2 0.00
49 119 0.30
50 37 0.09
51 1 0.00
52 86 0.21
53 1 0.00
54 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
Found at i:1230244 original size:92 final size:92
Alignment explanation
Indices: 1230083--1230609 Score: 730
Period size: 92 Copynumber: 5.6 Consensus size: 92
1230073 TGGCAACCCT
* * *
1230083 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
*
1230148 CTGGCCATGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* *
1230175 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAACGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
1230240 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * *
1230267 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGACCAACGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
* *
1230332 CTGGCCTTGAATCATCACATTGGCAAC
66 CTGGCCTTGAATCAGCACATTGGCACC
** * * * * *
1230359 TCCAAGTCCAATATTGCTAGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAATGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTCCAATGTA
1230424 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
* *
1230452 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGTCCAATG
* *
1230517 TCGCTGGCCTTGAATCAGCATATTGGCGTCTCTATCATC
63 TAGCTGGCCTTGAATCAGCACATT-G-G---C-A-C--C
*
1230556 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAA
1230610 CATTCCTAAG
Statistics
Matches: 390, Mismatches: 32, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
92 217 0.56
93 76 0.19
95 34 0.09
96 6 0.02
97 1 0.00
100 1 0.00
101 11 0.03
102 2 0.01
104 42 0.11
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:1230529 original size:52 final size:52
Alignment explanation
Indices: 1230451--1230600 Score: 255
Period size: 52 Copynumber: 2.9 Consensus size: 52
1230441 ACATTGGCAC
*
1230451 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCAT
* *
1230503 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTCTATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCAT
* *
1230555 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
1230601 CATCTTTAAC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCAT
Found at i:1231460 original size:13 final size:13
Alignment explanation
Indices: 1231442--1231530 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
1231432 CATAAAGTGT
1231442 TGTATCGATACAA
1 TGTATCGATACAA
1231455 TGTATCGATACATAAA
1 TGTATCGATAC---AA
1231471 TGTTGTATCGATACAA
1 ---TGTATCGATACAA
*
1231487 TGTATTGATACATAA
1 TGTATCGATAC--AA
1231502 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1231519 TGTATCGATACA
1 TGTATCGATACA
1231531 TAAGTTTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 33 0.53
15 2 0.03
16 4 0.06
17 2 0.03
19 21 0.34
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1231479 original size:19 final size:18
Alignment explanation
Indices: 1231419--1231549 Score: 85
Period size: 19 Copynumber: 7.8 Consensus size: 18
1231409 AATTTCAACG
1231419 ATTTGTATCGATACATAA
1 ATTTGTATCGATACATAA
1231437 AGTGTTGTATCGATAC---A
1 A-T-TTGTATCGATACATAA
1231454 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
1231470 ATGTTGTATCGATAC---A
1 AT-TTGTATCGATACATAA
*
1231486 A--TGTATTGATACATAA
1 ATTTGTATCGATACATAA
*
1231502 GTGTTGTATCGATAC---A
1 AT-TTGTATCGATACATAA
1231518 A--TGTATCGATACATAA
1 ATTTGTATCGATACATAA
*
1231534 GTTTTGTATCGATACA
1 -ATTTGTATCGATACA
1231550 ATGTAAGCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 39
0.67 0.04 0.30
Matches are distributed among these distances:
13 32 0.36
16 7 0.08
17 2 0.02
18 1 0.01
19 34 0.39
20 12 0.14
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
ATTTGTATCGATACATAA
Found at i:1231480 original size:32 final size:32
Alignment explanation
Indices: 1231422--1231554 Score: 221
Period size: 32 Copynumber: 4.1 Consensus size: 32
1231412 TTCAACGATT
1231422 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAA-TGTTGTATCGATACAA
1231455 TGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
* *
1231487 TGTATTGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
* *
1231519 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
1231551 TGTA
1 TGTA
1231555 AGCTACTGCC
Statistics
Matches: 96, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 80 0.83
33 16 0.17
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAATGTTGTATCGATACAA
Found at i:1231580 original size:33 final size:33
Alignment explanation
Indices: 1231538--1231615 Score: 156
Period size: 33 Copynumber: 2.4 Consensus size: 33
1231528 ACATAAGTTT
1231538 TGTATCGATACAATGTAAGCTACTGCCAAAAAA
1 TGTATCGATACAATGTAAGCTACTGCCAAAAAA
1231571 TGTATCGATACAATGTAAGCTACTGCCAAAAAA
1 TGTATCGATACAATGTAAGCTACTGCCAAAAAA
1231604 TGTATCGATACA
1 TGTATCGATACA
1231616 TTACTCAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (33 bp):
TGTATCGATACAATGTAAGCTACTGCCAAAAAA
Found at i:1231745 original size:32 final size:32
Alignment explanation
Indices: 1231709--1231785 Score: 145
Period size: 32 Copynumber: 2.4 Consensus size: 32
1231699 ACACTATAAA
1231709 ATGTATCGATACATACAGGCAAATTTGCCCAG
1 ATGTATCGATACATACAGGCAAATTTGCCCAG
*
1231741 ATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACATACAGGCAAATTTGCCCAG
1231773 ATGTATCGATACA
1 ATGTATCGATACA
1231786 CTATGAAATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (32 bp):
ATGTATCGATACATACAGGCAAATTTGCCCAG
Found at i:1231753 original size:84 final size:84
Alignment explanation
Indices: 1231658--1231818 Score: 286
Period size: 84 Copynumber: 1.9 Consensus size: 84
1231648 CACTGATCTT
1231658 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAATGTATCGATACAT
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAATGTATCGATACAT
*
1231723 ACAGGCAAATTTGCCCAGA
66 ACAAGCAAATTTGCCCAGA
* *
1231742 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATGTATCGATACAT
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAATGTATCGATACAT
*
1231807 GCAAGCAAATTT
66 ACAAGCAAATTT
1231819 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 73 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (84 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATAAAATGTATCGATACAT
ACAAGCAAATTTGCCCAGA
Found at i:1239438 original size:53 final size:51
Alignment explanation
Indices: 1239323--1239441 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
1239313 CAATTCTCCG
* * *
1239323 CAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCTA
* *
1239374 TAATCGTGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTT-TCA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTCC--AAAACACCAATTTTCT-A
1239427 CAATCGGGGATACTC
1 CAATCGGGGATACTC
1239442 TAACCCCGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 30 0.52
52 1 0.02
53 27 0.47
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (51 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCTA
Found at i:1239550 original size:79 final size:79
Alignment explanation
Indices: 1239460--1239630 Score: 195
Period size: 79 Copynumber: 2.2 Consensus size: 79
1239450 TTAATCATCA
* * * * *
1239460 GGGATACTCCAACCTCATTATTTCC-GAGAGGATACTCCAACCCCTGCTTT-A-TTCTTAAAATA
1 GGGATACTCCAACCCCATTATTTCCAAAG-GGATACTCCAACCCC-GATTTCATTTC-CAAAACA
**
1239522 TTGATTTCTCATAATCG
63 TCAATTTCTCATAATCG
* * *
1239539 GGGATACTCCAACCCCGTTATTTTCAAAGGGATACTCCAATCCCGATTTCATTTCCAAAACATCA
1 GGGATACTCCAACCCCATTATTTCCAAAGGGATACTCCAACCCCGATTTCATTTCCAAAACATCA
*
1239604 ATTTCTCTTAATCG
66 ATTTCTCATAATCG
1239618 GGGATACTCCAAC
1 GGGATACTCCAAC
1239631 TTCGATTTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 4 0.05
79 69 0.88
80 5 0.06
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCATTATTTCCAAAGGGATACTCCAACCCCGATTTCATTTCCAAAACATCA
ATTTCTCATAATCG
Found at i:1239627 original size:51 final size:50
Alignment explanation
Indices: 1239567--1239732 Score: 199
Period size: 51 Copynumber: 3.3 Consensus size: 50
1239557 TATTTTCAAA
* * *
1239567 GGGATACTCCAA-TCCCGATTTCATTTCCAAAACATCAATTTCTCTTAATCG
1 GGGATACTCCAACT-CCGATTTTATTTCCAAAACACCAATTT-TCATAATCG
* * *
1239618 GGGATACTCCAACTTCGATTTTATTTCTAAAACACCCATTTTCCATAATCG
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTT-CATAATCG
* * *
1239669 GGGATACTCAAACTCCGATTTTATTTCCAAAGCACCGACTTTTCATAATCG
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACACC-AATTTTCATAATCG
*
1239720 GGGATATTCCAAC
1 GGGATACTCCAAC
1239733 CCCGTTATTT
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
50 1 0.01
51 92 0.94
52 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCATAATCG
Found at i:1239828 original size:27 final size:28
Alignment explanation
Indices: 1239790--1239866 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
1239780 CATCAATTTC
*
1239790 TCATTGGGGATACTCCAACCCCGTTA-A
1 TCATAGGGGATACTCCAACCCCGTTACA
* *
1239817 TCATCGGGGATACTCCAACCCCGTTACC
1 TCATAGGGGATACTCCAACCCCGTTACA
**
1239845 TCCGAGGGGATACTCCAACCCC
1 TCATAGGGGATACTCCAACCCC
1239867 AGCTTTATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.21
Consensus pattern (28 bp):
TCATAGGGGATACTCCAACCCCGTTACA
Found at i:1239895 original size:103 final size:105
Alignment explanation
Indices: 1239716--1239913 Score: 274
Period size: 103 Copynumber: 1.9 Consensus size: 105
1239706 ACTTTTCATA
* ** * * * *
1239716 ATCGGGGATATTCCAACCCCGTTATTTCTGAGGGGACACTCCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGACACTCCAACCCCAGCTTTATTTCCAAAAC
1239781 ATCAATTTCTCAT-T-GGGGATACTCCAACCCCGTTAATC
66 ATCAATTTCTCATATCGGGGATACTCCAACCCCGTTAATC
* *
1239819 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCAGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGACACTCCAACCCCAGCTTTATTTCCAAAAC
**
1239884 ATTGATTTCTCATAATCGGGGATACTCCAA
66 ATCAATTTCTCAT-ATCGGGGATACTCCAA
1239914 ACCCAGTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
103 67 0.83
105 1 0.01
106 13 0.16
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (105 bp):
ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGACACTCCAACCCCAGCTTTATTTCCAAAAC
ATCAATTTCTCATATCGGGGATACTCCAACCCCGTTAATC
Found at i:1239919 original size:51 final size:51
Alignment explanation
Indices: 1239850--1240070 Score: 198
Period size: 51 Copynumber: 4.3 Consensus size: 51
1239840 TTACCTCCGA
* * * * *
1239850 GGGGATACTCCAACCCCAGCTTTATTTCCAAAATATTGATTTCTCATAATC
1 GGGGATACTCCAACCCCAGTTTTATTTCCAAAACACTAATTTCTCACAATC
* * * *
1239901 GGGGATACTCCAAACCCAGTTTTATTTCTAAAACACTAATTTTTCACAATT
1 GGGGATACTCCAACCCCAGTTTTATTTCCAAAACACTAATTTCTCACAATC
* * * *
1239952 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTT-TC-CTTTAATT
1 GGGGATACTCCAACCCCAGTTTTATTTCCAAAACACTAATTTCTCAC---AATC
* ** *
1240004 GGGGATACTCCAACTCC-GATTTTATTTTTAAAA-ACATCAATTTTTCACAATC
1 GGGGATACTCCAACCCCAG-TTTTATTTCCAAAACAC-T-AATTTCTCACAATC
*
1240056 GAGGATACTCCAACC
1 GGGGATACTCCAACC
1240071 TCATTATTTC
Statistics
Matches: 142, Mismatches: 20, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
49 1 0.01
50 2 0.01
51 82 0.58
52 49 0.35
53 5 0.04
54 2 0.01
55 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACCCCAGTTTTATTTCCAAAACACTAATTTCTCACAATC
Found at i:1240027 original size:52 final size:50
Alignment explanation
Indices: 1239889--1240070 Score: 170
Period size: 52 Copynumber: 3.5 Consensus size: 50
1239879 AAAATATTGA
* *
1239889 TTTCTCATAATCGGGGATACTCCAAACCC-AGTTTTA-TTTCTAAAACACTAAT
1 TTTC-CATAATTGGGGATACTCC-AACCCGA-TTTTATTTTC-AAAACACCAAT
* * *
1239941 TTTTCACAATTGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAAT
1 TTTCCATAATTGGGGATACTCCAA-CCCGATTTTATTTTCAAAACACCAAT
* * *
1239992 TTTCCTTTAATTGGGGATACTCCAACTCCGATTTTATTTTTAAAAACATCAAT
1 TTTCC-ATAATTGGGGATACTCCAAC-CCGATTTTA-TTTTCAAAACACCAAT
* * * *
1240045 TTTTCACAATCGAGGATACTCCAACC
1 TTTCCATAATTGGGGATACTCCAACC
1240071 TCATTATTTC
Statistics
Matches: 108, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
50 2 0.02
51 40 0.37
52 48 0.44
53 18 0.17
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (50 bp):
TTTCCATAATTGGGGATACTCCAACCCGATTTTATTTTCAAAACACCAAT
Found at i:1240089 original size:28 final size:30
Alignment explanation
Indices: 1240053--1240133 Score: 98
Period size: 28 Copynumber: 2.8 Consensus size: 30
1240043 ATTTTTCACA
* * *
1240053 ATCGAGGATACTCCAACCTCATTA-TTTC-
1 ATCGGGGATACTCCAACCCCATTACCTTCG
*
1240081 ATCGGGGATACTCCAACCCCGTTACCTTCG
1 ATCGGGGATACTCCAACCCCATTACCTTCG
1240111 A--GGGGATACTCCAACCCCATTAC
1 ATCGGGGATACTCCAACCCCATTAC
1240134 TATCTGCAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 42 0.91
29 3 0.07
30 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCATTACCTTCG
Found at i:1244793 original size:13 final size:13
Alignment explanation
Indices: 1244775--1244799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1244765 CATAAAATGT
1244775 TGTATCGATACAA
1 TGTATCGATACAA
1244788 TGTATCGATACA
1 TGTATCGATACA
1244800 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1244797 original size:33 final size:33
Alignment explanation
Indices: 1244755--1244819 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
1244745 TTCAACAATT
1244755 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1244788 TGTATCGATACATATTTTTTTGTATCGATACA
1 TGTATCGATACATAAAATGTTGTATCGATACA
1244820 TTTTAAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1244939 original size:52 final size:52
Alignment explanation
Indices: 1244895--1245019 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
1244885 CATTGATCTT
1244895 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* * *
1244947 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* *
1244999 TGTATCGATACATGCAAGCAA
1 TGTATCAATACATGCAGGCAA
1245020 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (52 bp):
TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:1252172 original size:1 final size:1
Alignment explanation
Indices: 1252166--1252222 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
1252156 TTCCAAACAC
** * * * * *
1252166 AAAAAAAAGGAAAAAAAAAAGAAAAAAAAAAGAAAAAAAGAAAAGAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1252223 CAGAAAATCT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.88, C:0.02, G:0.11, T:0.00
Consensus pattern (1 bp):
A
Found at i:1252184 original size:13 final size:11
Alignment explanation
Indices: 1252166--1252217 Score: 77
Period size: 11 Copynumber: 4.5 Consensus size: 11
1252156 TTCCAAACAC
*
1252166 AAAAAAAAGGA
1 AAAAAAAAAGA
1252177 AAAAAAAAAGA
1 AAAAAAAAAGA
1252188 AAAAAAAAAGAA
1 AAAAAAAAAG-A
1252200 AAAAAGAAAAGA
1 AAAAA-AAAAGA
1252212 AAAAAA
1 AAAAAA
1252218 CAAAACAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
11 21 0.55
12 12 0.32
13 5 0.13
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:1252203 original size:24 final size:23
Alignment explanation
Indices: 1252166--1252217 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 23
1252156 TTCCAAACAC
*
1252166 AAAAAAAAGGAAAAAAAAAAGAA
1 AAAAAAAAGAAAAAAAAAAAGAA
1252189 AAAAAAAAGAAAAAAAGAAAAGAA
1 AAAAAAAAGAAAAAAA-AAAAGAA
1252213 AAAAA
1 AAAAA
1252218 CAAAACAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (23 bp):
AAAAAAAAGAAAAAAAAAAAGAA
Found at i:1252214 original size:20 final size:18
Alignment explanation
Indices: 1252176--1252229 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 18
1252166 AAAAAAAAGG
1252176 AAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAGAAAAAAA
1252194 AAAGAAAAAAAGAAAAGAAA
1 AAA-AAAAAAAGAAAA-AAA
*
1252214 AAAACAAAACAGAAAA
1 AAAA-AAAAAAGAAAA
1252230 TCTCGATAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 3 0.09
19 13 0.41
20 16 0.50
ACGTcount: A:0.87, C:0.04, G:0.09, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAAAA
Found at i:1252222 original size:13 final size:12
Alignment explanation
Indices: 1252166--1252222 Score: 80
Period size: 13 Copynumber: 4.7 Consensus size: 12
1252156 TTCCAAACAC
*
1252166 AAAAAAAAGGAA
1 AAAAAAAAGAAA
1252178 AAAAAAAAG-AA
1 AAAAAAAAGAAA
1252189 AAAAAAAAGAAA
1 AAAAAAAAGAAA
1252201 AAAAGAAAAGAAA
1 AAAA-AAAAGAAA
1252214 AAAACAAAA
1 AAAA-AAAA
1252223 CAGAAAATCT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
11 11 0.26
12 15 0.36
13 16 0.38
ACGTcount: A:0.88, C:0.02, G:0.11, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:1253322 original size:33 final size:32
Alignment explanation
Indices: 1253269--1253412 Score: 209
Period size: 33 Copynumber: 4.4 Consensus size: 32
1253259 CCACGACTCA
*
1253269 GTGGCAA-CCTTCCTCTAAAGCCCACACAAGTTG
1 GTGGCAACCCTTCC-C-AAAGCCCACACAAGTCG
1253302 GTGGCAATCCCTTCCCAAAGCCCACACAAGTCG
1 GTGGCAA-CCCTTCCCAAAGCCCACACAAGTCG
*
1253335 GTGGCAACCCTTCCCAAAGCCCACACAAGTTG
1 GTGGCAACCCTTCCCAAAGCCCACACAAGTCG
* *
1253367 GTGGCAACCATTCTCTAAAGCCCACACAAGTCG
1 GTGGCAACCCTTC-CCAAAGCCCACACAAGTCG
1253400 GTGGCAACCCTTC
1 GTGGCAACCCTTC
1253413 TAAGCCCAAT
Statistics
Matches: 102, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
32 36 0.35
33 59 0.58
34 1 0.01
35 6 0.06
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (32 bp):
GTGGCAACCCTTCCCAAAGCCCACACAAGTCG
Found at i:1253387 original size:65 final size:67
Alignment explanation
Indices: 1253269--1253412 Score: 233
Period size: 65 Copynumber: 2.2 Consensus size: 67
1253259 CCACGACTCA
*
1253269 GTGGCAA-CCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATCCCTTCCCAAAGCCCACACAAGT
1 GTGGCAACCCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATCCATTCCCAAAGCCCACACAAGT
1253333 CG
66 CG
*
1253335 GTGGCAACCCTTCC-C-AAAGCCCACACAAGTTGGTGGCAA-CCATTCTCTAAAGCCCACACAAG
1 GTGGCAACCCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATCCATTC-CCAAAGCCCACACAAG
1253397 TCG
65 TCG
1253400 GTGGCAACCCTTC
1 GTGGCAACCCTTC
1253413 TAAGCCCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
64 5 0.07
65 55 0.74
66 8 0.11
67 6 0.08
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (67 bp):
GTGGCAACCCTTCCTCTAAAGCCCACACAAGTTGGTGGCAATCCATTCCCAAAGCCCACACAAGT
CG
Found at i:1253471 original size:49 final size:49
Alignment explanation
Indices: 1253413--1253999 Score: 728
Period size: 49 Copynumber: 11.8 Consensus size: 49
1253403 GCAACCCTTC
* *
1253413 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1253462 TAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
1253511 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1253560 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
1253609 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
1253658 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
1253707 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CTTGCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-CATCTT
*
1253756 TAAGTCC-ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
1253804 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
1253853 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * *
1253905 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T--TCATCTT
* * * * *
1253961 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1254000 TCTTTATCAC
Statistics
Matches: 460, Mismatches: 67, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
48 40 0.09
49 336 0.73
51 2 0.00
52 40 0.09
53 2 0.00
55 3 0.01
56 36 0.08
57 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:1253587 original size:98 final size:98
Alignment explanation
Indices: 1253413--1253940 Score: 871
Period size: 98 Copynumber: 5.4 Consensus size: 98
1253403 GCAACCCTTC
* * * * * * * *
1253413 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGTT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1253478 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
1253511 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGCCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1253576 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
1253609 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
*
1253674 GGCCTTGAATCAGCATATTGGCACTTTTATCTT
66 GGCCTTGAATCAGCATATTGGCACCTTTATCTT
1253707 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CTTGCACCATTAAGTCC-ATATAGC
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT-CACCATTAAGTCCAATATAGC
1253770 TGGCCTTGAATCAGCATATTGGCACCTTTATCTT
65 TGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
1253804 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCT
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
*
1253869 GGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
66 GGCCTTGAATCAGCATATTGGCACC-TTT--ATCTT
* *
1253905 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTG
1253941 ACATCCTTTT
Statistics
Matches: 407, Mismatches: 17, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
97 93 0.23
98 272 0.67
99 3 0.01
101 39 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (98 bp):
TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATAGCT
GGCCTTGAATCAGCATATTGGCACCTTTATCTT
Found at i:1254896 original size:13 final size:13
Alignment explanation
Indices: 1254878--1254902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1254868 CATAAAATGT
1254878 TGTATCGATACAA
1 TGTATCGATACAA
1254891 TGTATCGATACA
1 TGTATCGATACA
1254903 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1254900 original size:33 final size:33
Alignment explanation
Indices: 1254858--1254922 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
1254848 TTCAACAATT
1254858 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1254891 TGTATCGATACATATTTTTTTGTATCGATACA
1 TGTATCGATACATAAAATGTTGTATCGATACA
1254923 TTTTAAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1254983 original size:13 final size:13
Alignment explanation
Indices: 1254965--1254992 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1254955 ATTACTCAAA
1254965 TGTATCGATACAT
1 TGTATCGATACAT
1254978 TGTATCGATACAT
1 TGTATCGATACAT
1254991 TG
1 TG
1254993 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1255041 original size:52 final size:52
Alignment explanation
Indices: 1254998--1255122 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 52
1254988 CATTGATCTT
*
1254998 TGTATCAATACATGCAGGCAAATTTTCCCAGATGTATCGATACATTATAAAA
1 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* * *
1255050 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* *
1255102 TGTATCGATACATGCAAGCAA
1 TGTATCAATACATGCAGGCAA
1255123 CTTTTCATAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (52 bp):
TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:1259748 original size:131 final size:131
Alignment explanation
Indices: 1259514--1259763 Score: 500
Period size: 131 Copynumber: 1.9 Consensus size: 131
1259504 AATGCCACAG
1259514 CCCGTGCATTCTACCGGGGTTGTTCCAACAATGAATTTCACCCCAAATCCAGCTCCAAGCATGAC
1 CCCGTGCATTCTACCGGGGTTGTTCCAACAATGAATTTCACCCCAAATCCAGCTCCAAGCATGAC
1259579 CCAAAATGTGCAGCCTCGCCATGCAGTTAACGCAAGGAACATAAACAACCAACATAAACCCTAAA
66 CCAAAATGTGCAGCCTCGCCATGCAGTTAACGCAAGGAACATAAACAACCAACATAAACCCTAAA
1259644 C
131 C
1259645 CCCGTGCATTCTACCGGGGTTGTTCCAACAATGAATTTCACCCCAAATCCAGCTCCAAGCATGAC
1 CCCGTGCATTCTACCGGGGTTGTTCCAACAATGAATTTCACCCCAAATCCAGCTCCAAGCATGAC
1259710 CCAAAATGTGCAGCCTCGCCATGCAGTTAACGCAAGGAACATAAACAACCAACA
66 CCAAAATGTGCAGCCTCGCCATGCAGTTAACGCAAGGAACATAAACAACCAACA
1259764 AGCACCCCGA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 119 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (131 bp):
CCCGTGCATTCTACCGGGGTTGTTCCAACAATGAATTTCACCCCAAATCCAGCTCCAAGCATGAC
CCAAAATGTGCAGCCTCGCCATGCAGTTAACGCAAGGAACATAAACAACCAACATAAACCCTAAA
C
Found at i:1267651 original size:55 final size:54
Alignment explanation
Indices: 1267399--1267708 Score: 336
Period size: 61 Copynumber: 5.5 Consensus size: 54
1267389 CTTCTTTCAC
* *
1267399 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1267453 CCTTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1267507 -CTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCG
1 CCTTTAGTCCTCAAAGAGCAGGATG------CCTTTCAAAGCCCACACAAGTTGGTGGCA
** * *
1267566 CCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCA
1 CC-TTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1267621 CCTTTTACTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCA
1 CC-TTTAGTCCTCAAAGAGCAGGATGCC-TTT-C----AAAGCCCACACAAGTTGGTGGCA
*
1267682 -CTTCCTAGTCCTTAAAGAGCAGGATGC
1 CCTT--TAGTCCTCAAAGAGCAGGATGC
1267709 TCCCTCCTTT
Statistics
Matches: 216, Mismatches: 24, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
53 22 0.10
54 50 0.23
55 50 0.23
56 3 0.01
57 1 0.00
59 29 0.13
60 2 0.01
61 59 0.27
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (54 bp):
CCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1267675 original size:116 final size:113
Alignment explanation
Indices: 1267424--1267705 Score: 386
Period size: 116 Copynumber: 2.5 Consensus size: 113
1267414 GAGCAGGACG
* **
1267424 CCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAG
1 CCTTTTAAAGCCCACACAAGTTGGTGGC-CCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAG
* * * *
1267488 CCCACACGAGTTGGTGGCACTTCAGTCCTCAAAGAGCAGGATGCCTTTT
65 CCCACACAAGCTAGTGGCACTTCACTCCTCAAAGAGCAGGATGCCTTTT
*
1267537 CCTTTCAAAGCCCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAG
1 CCTTTTAAAGCCCACACAAGTTGGTGGC-CCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAG
* *
1267602 CCCACACAAGCTAGTGGCACCTTTTACTCCTCAAAGAGTAGGATGCCTTTT
65 CCCACACAAGCTAGTGGCA-C-TTCACTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1267653 CCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCTTAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCCCTT-TTAGTCCTCAAAGAGCAGGA
1267706 TGCTCCCTCC
Statistics
Matches: 149, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
113 29 0.19
114 46 0.31
115 4 0.03
116 70 0.47
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (113 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
CCACACAAGCTAGTGGCACTTCACTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1267788 original size:55 final size:55
Alignment explanation
Indices: 1267729--1267971 Score: 310
Period size: 55 Copynumber: 4.3 Consensus size: 55
1267719 CGCCTTTTTT
* * *
1267729 TCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAG
*
1267784 TCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAG
1 TCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAG
* * * *
1267845 TCCTCAAAGAGTAGGACGTCTTTCAAAGCCCACACGAGTTGGTGGCACCTT-TCAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT-AG
* *
1267900 TCCTTAAAGAGAAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1267955 TCCTCAAAGAGCAGGAC
1 TCCTCAAAGAGCAGGAC
1267972 ACTCTCTCTT
Statistics
Matches: 164, Mismatches: 14, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
54 1 0.01
55 107 0.65
56 4 0.02
60 3 0.02
61 49 0.30
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (55 bp):
TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAG
Found at i:1267846 original size:155 final size:155
Alignment explanation
Indices: 1267564--1267860 Score: 486
Period size: 155 Copynumber: 1.9 Consensus size: 155
1267554 AAGTTGGTGG
1267564 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTTAC
1 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTTAC
* * *
1267629 TCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCT
66 TCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCT
*
1267694 TAAAGAGCAGGATGCTCCCTCCTTT
131 CAAAGAGCAGGATGCTCCCTCCTTT
** ** * * *
1267719 CGCCTTTTTTTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTTAC
1267784 TCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCT
66 TCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCT
*
1267849 CAAAGAGTAGGA
131 CAAAGAGCAGGA
1267861 CGTCTTTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
155 130 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (155 bp):
CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTTAC
TCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCT
CAAAGAGCAGGATGCTCCCTCCTTT
Found at i:1267985 original size:116 final size:112
Alignment explanation
Indices: 1267729--1267976 Score: 317
Period size: 116 Copynumber: 2.2 Consensus size: 112
1267719 CGCCTTTTTT
* *
1267729 TCCTCAAAGAGCAGGATGC-CTTTT-AAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAA
1 TCCTCAAAGAGCAGGA-CCTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
*
1267792 GAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAG
65 GAGAAGGACG----C-CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAG
* * * * *
1267845 TCCTCAAAGAGTAGGACGTC-TTTCAAAGCCCACACGAGTTGGTGGCACCTTTCAGTCCTTAAAG
1 TCCTCAAAGAGCAGGACCTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAG
1267909 AGAAGGACG-CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAG
66 AGAAGGACGCCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAG
1267955 TCCTCAAAGAGCAGGACACTCT
1 TCCTCAAAGAGCAGGAC-CTCT
1267977 CTCTTTTCAC
Statistics
Matches: 117, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
110 49 0.42
111 5 0.04
115 3 0.03
116 60 0.51
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (112 bp):
TCCTCAAAGAGCAGGACCTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAG
AGAAGGACGCCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAG
Found at i:1268040 original size:265 final size:265
Alignment explanation
Indices: 1267453--1268127 Score: 890
Period size: 265 Copynumber: 2.5 Consensus size: 265
1267443 GTTGGTGGCA
1267453 CCTTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCA-CTTCAGTCCT
1 CCTTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTCAGTCCT
* * * *
1267517 CAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAA
66 CAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGC-ACTTCTAGTCCTCAAA
* *
1267582 GAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTTACTCCTCAAAGAGTAGGATG
130 GAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTCACTCCTCAAAGAGAAGGA--
* * * **
1267647 CCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCTTAAAGAGCAGGATGCTCC
193 CC--TGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACACTCC
*
1267712 CTCCTTTCGC
256 CTCCTTTCAC
* ** * * * * *
1267722 CTTTTTTTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCC
1 CCTTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCACC-TTCAGTCC
* *
1267787 TCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAA
65 TCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTT-CTAGTCCTCAA
* ** * * * * *
1267852 AGAGTAGGACGTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTCAGTCCTTAAAGAGAAGGA-
129 AGAGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTCACTCCTCAAAGAGAAGGAC
*
1267916 C-GCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGACACTCTCT
194 CTGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACACTCCCT
*
1267979 CTTTTCAC
258 CCTTTCAC
* *
1267987 CCTTTAGTCTTCAGAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCC
1 CCTTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTCAGTCC
* * *
1268052 TCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCATACAAGTTGGTGGCACTTTGTAGTCCTCA
65 TCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCAC-TTCTAGTCCTCA
1268117 AAGAGCAGGAC
128 AAGAGCAGGAC
1268128 TCACTTTATT
Statistics
Matches: 351, Mismatches: 48, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
265 134 0.38
266 47 0.13
267 2 0.01
268 1 0.00
269 47 0.13
270 4 0.01
271 116 0.33
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (265 bp):
CCTTTAGTCTTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTCAGTCCT
CAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTAGTCCTCAAAG
AGCAGGACACCTTTCAAAGCCCACACAAGCTAGTGGCACCTTTCACTCCTCAAAGAGAAGGACCT
GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACACTCCCTCCT
TTCAC
Found at i:1268166 original size:42 final size:42
Alignment explanation
Indices: 1268110--1268264 Score: 163
Period size: 42 Copynumber: 3.6 Consensus size: 42
1268100 GCACTTTGTA
*
1268110 GTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTT
* * *
1268152 GTCCTCAAAGAGCAGGAAGCA-TTTCGTTTTCCTCTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTCTT-TCTTTT
* * *
1268195 GTCCTCAAAGAGCAGGACGCTCTTTA-TTTCCTTCTTTTCCCTCCTA
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC-TTT--CT-TTT
1268241 GTCCTCAAAGAGCAGGACGC-CTTT
1 GTCCTCAAAGAGCAGGACGCACTTT
1268265 TAAAGCCCAC
Statistics
Matches: 95, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 3 0.03
42 34 0.36
43 27 0.28
44 5 0.05
45 5 0.05
46 21 0.22
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.36
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTT
Found at i:1268554 original size:46 final size:46
Alignment explanation
Indices: 1268450--1268645 Score: 212
Period size: 46 Copynumber: 4.4 Consensus size: 46
1268440 TGGCACTTTG
* * *
1268450 TAGTCCTCAAAGAGCAGGACTCACTTTATTTTCC-TC-TTT--CTTT
1 TAGTCCTCAAAGAGCAGGACACTCTTTA-TTTCCTTCTTTTCCCTTC
*
1268493 TA-TCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTTC
1 TAGTCCTCAAAGAGCAGGACACTCTTTATTTCCTTCTTTTCCCTTC
* ** * *
1268538 TAGTCCTCAAAAAGCAGGACACAT-TTCGTTT--TCCTTTTCTCTT-
1 TAGTCCTCAAAGAGCAGGACAC-TCTTTATTTCCTTCTTTTCCCTTC
*
1268581 TTGTCCTCAAAGAGCAGGACACTCTTTATTTCCTTCTTTTCCCTTC
1 TAGTCCTCAAAGAGCAGGACACTCTTTATTTCCTTCTTTTCCCTTC
*
1268627 TAGTCTTCAAAGAGCAGGA
1 TAGTCCTCAAAGAGCAGGA
1268646 TGCACTTTAT
Statistics
Matches: 126, Mismatches: 17, Indels: 17
0.79 0.11 0.11
Matches are distributed among these distances:
41 5 0.04
42 26 0.21
43 30 0.24
44 10 0.08
45 15 0.12
46 39 0.31
47 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.13, T:0.39
Consensus pattern (46 bp):
TAGTCCTCAAAGAGCAGGACACTCTTTATTTCCTTCTTTTCCCTTC
Found at i:1268589 original size:342 final size:340
Alignment explanation
Indices: 1267898--1268600 Score: 1074
Period size: 342 Copynumber: 2.1 Consensus size: 340
1267888 GGCACCTTTC
* *
1267898 AGTCCTTAAAGAGAAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA
* * *
1267963 GAGCAGGACACTCTCTCTTTTCACCCTTTAGTCTTCAGAGAGCAGGATGCCTTTCAAAGCCCACA
66 GAGCAGGACACTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
* *
1268028 CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCATACAA
131 CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAA
*
1268093 GTTGGTGGCACTTTGTAGTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTGTCCTC
196 GTTGGTGGCACTTTGTAGTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTATCCTC
* * *
1268158 AAAGAGCAGGAAGCATTTCGTTTTCCTCTTCTCCTTTGTCCTCAAAGAGCAGGACGCTCTTTATT
261 AAAGAGCAGGAAGCATTTC-TTTTCCTCTTCTCCTTTGTCCTCAAAAAGCAGGACACTCTTCATT
*
1268223 TCCTTCTTTTCCCTCCT
325 T-CTCCTTTTCCCTCCT
*
1268240 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCTTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA
* * *
1268305 GAGTAGGACGCTCTCTCTTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
66 GAGCAGGACACTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
* *
1268370 TGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGGCCACACAA
131 CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAA
1268435 GTTGGTGGCACTTTGTAGTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTATCCTC
196 GTTGGTGGCACTTTGTAGTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTATCCTC
* *
1268500 AAAGAGCAGGACGC-TCTT-TATTTCCTTCTTTTCCCTTCTAGTCCTCAAAAAGCAGGACACAT-
261 AAAGAGCAGGAAGCAT-TTCT-TTTCC-TCTTCT-CCTT-T-GTCCTCAAAAAGCAGGACAC-TC
* * *
1268562 TTCGTTT-TCCTTTTCTCT-TT
319 TTCATTTCTCCTTTTCCCTCCT
*
1268582 TGTCCTCAAAGAGCAGGAC
1 AGTCCTCAAAGAGCAGGAC
1268601 ACTCTTTATT
Statistics
Matches: 330, Mismatches: 24, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
340 1 0.00
341 6 0.02
342 285 0.86
343 13 0.04
344 1 0.00
345 23 0.07
346 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (340 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA
GAGCAGGACACTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
CGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAA
GTTGGTGGCACTTTGTAGTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTATCCTC
AAAGAGCAGGAAGCATTTCTTTTCCTCTTCTCCTTTGTCCTCAAAAAGCAGGACACTCTTCATTT
CTCCTTTTCCCTCCT
Found at i:1268606 original size:89 final size:88
Alignment explanation
Indices: 1268450--1268688 Score: 340
Period size: 89 Copynumber: 2.7 Consensus size: 88
1268440 TGGCACTTTG
* * * *
1268450 TAGTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTT-TCTTTTATCCTCAAAGAGCAGGACGC
1 TAGTCCTCAAAGAGCAGGACACA-TTTATTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACAC
1268514 TCTTTATTTCCTTCTTTTCCCTTC
65 TCTTTATTTCCTTCTTTTCCCTTC
* *
1268538 TAGTCCTCAAAAAGCAGGACACATTTCGTTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACAC
1 TAGTCCTCAAAGAGCAGGACACATTT-ATTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACAC
1268603 TCTTTATTTCCTTCTTTTCCCTTC
65 TCTTTATTTCCTTCTTTTCCCTTC
* * *
1268627 TAGTCTTCAAAGAGCAGGATGCAC-TTTATTTTCCTTTTC-CTTTTGTCCTCAGAGAGAAGGAC
1 TAGTCCTCAAAGAGCAGGA--CACATTTATTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGAC
1268689 GTATTTCGTT
Statistics
Matches: 136, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
87 3 0.02
88 51 0.38
89 76 0.56
90 3 0.02
91 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (88 bp):
TAGTCCTCAAAGAGCAGGACACATTTATTTTCCTTTTCTCTTTTGTCCTCAAAGAGCAGGACACT
CTTTATTTCCTTCTTTTCCCTTC
Found at i:1268675 original size:131 final size:129
Alignment explanation
Indices: 1268452--1268721 Score: 305
Period size: 131 Copynumber: 2.1 Consensus size: 129
1268442 GCACTTTGTA
* * *
1268452 GTCCTCAAAGAGCAGGACTCACTTTATTTTCCTCTTTCTTTTATCCTCAAAGAGCAGGACGCTCT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTCTTTCTTCTATCCTCAAAGAGCAGGACGCACT
* * * *
1268517 TTATTTCCTTCTTTTCCCTTCTAGTCCTCAAAAAGCAGGACACATTTCGTTTTCCTTTTCTCTTT
66 TTATTT-CTCCTTTTCCCTTCTAGTCCTCAAAAAGAAGGACACATTTCGTTTCCCTTTT-TCCTT
1268582 T
129 T
* * *
1268583 GTCCTCAAAGAGCAGGACACTCTTTA-TTTCCTTCTTTTCCCTTCTAGTCTTCAAAGAGCAGGAT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCC-TC-TTT--CTTCTA-TCCTCAAAGAGCAGGAC
* * * **
1268647 GCACTTTATTT-TCCTTTT-CCTT-TTGTCCTCAGAGAGAAGGACGTATTTCGTTTCCCTTTTTC
61 GCACTTTATTTCTCCTTTTCCCTTCTAGTCCTCAAAAAGAAGGACACATTTCGTTTCCCTTTTTC
1268709 CTTT
126 CTTT
*
1268713 GTCCACAAA
1 GTCCTCAAA
1268722 AAGTGGGACA
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
130 18 0.15
131 57 0.48
132 7 0.06
133 6 0.05
134 5 0.04
135 25 0.21
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (129 bp):
GTCCTCAAAGAGCAGGACACACTTTATTTTCCTCTTTCTTCTATCCTCAAAGAGCAGGACGCACT
TTATTTCTCCTTTTCCCTTCTAGTCCTCAAAAAGAAGGACACATTTCGTTTCCCTTTTTCCTTT
Found at i:1269296 original size:21 final size:21
Alignment explanation
Indices: 1269270--1269325 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
1269260 TTTTTATCCA
*
1269270 AATGTATCGATACATTTGTAT
1 AATGTATCGATACATTTGTAG
**
1269291 AATGTATCGATATTTTTGTAG
1 AATGTATCGATACATTTGTAG
1269312 AATGTATCGATACA
1 AATGTATCGATACA
1269326 AGGTCCCAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1269389 original size:21 final size:22
Alignment explanation
Indices: 1269353--1269396 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
1269343 AATTTTGATT
*
1269353 TTCAATAATTTGTATCGATACA
1 TTCAATAATATGTATCGATACA
1269375 TTCAATAA-ATGTATCGATACA
1 TTCAATAATATGTATCGATACA
1269396 T
1 T
1269397 AAGTGTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (22 bp):
TTCAATAATATGTATCGATACA
Found at i:1269408 original size:19 final size:18
Alignment explanation
Indices: 1269384--1269446 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
1269374 ATTCAATAAA
1269384 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
1269403 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
1269416 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
1269435 TGTATCGATACA
1 TGTATCGATACA
1269447 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:1269421 original size:13 final size:13
Alignment explanation
Indices: 1269403--1269427 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1269393 ACATAAGTGT
1269403 TGTATCGATACAA
1 TGTATCGATACAA
1269416 TGTATCGATACA
1 TGTATCGATACA
1269428 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1269423 original size:32 final size:32
Alignment explanation
Indices: 1269382--1269454 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
1269372 ACATTCAATA
1269382 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
1269414 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
1269446 AATGTATCG
1 AATGTATCG
1269455 CTACGAAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:1269497 original size:21 final size:21
Alignment explanation
Indices: 1269471--1269512 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1269461 AGCTACTGCC
1269471 AAGGAAATATATCGATACATT
1 AAGGAAATATATCGATACATT
*
1269492 AAGGAAATGTATCGATACATT
1 AAGGAAATATATCGATACATT
1269513 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (21 bp):
AAGGAAATATATCGATACATT
Found at i:1269517 original size:13 final size:13
Alignment explanation
Indices: 1269499--1269524 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1269489 ATTAAGGAAA
1269499 TGTATCGATACAT
1 TGTATCGATACAT
1269512 TGTATCGATACAT
1 TGTATCGATACAT
1269525 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1271947 original size:51 final size:52
Alignment explanation
Indices: 1271888--1272012 Score: 182
Period size: 51 Copynumber: 2.4 Consensus size: 52
1271878 CTCAATTCTC
* * *
1271888 CACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-TTTT
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
*
1271938 CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTT
1 C-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTTTT
1271992 CACAATCGGGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
1272013 CCCGTTATTT
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
50 1 0.02
51 32 0.48
53 28 0.42
54 5 0.08
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (52 bp):
CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:1272148 original size:79 final size:77
Alignment explanation
Indices: 1271947--1272170 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 77
1271937 TCTATAATCG
* * *
1271947 GGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
1 GGGATACTCCAAC-CCGA-TTTATTTCC--AAAACATCAATTTCTCATAATCGGGGATACTCCAA
*
1272012 CCCCGTTATTTCCGAG
62 CCCCGTTATTTCCGAA
* * ** ** *
1272028 GGGATACTCCAACCCCTGCTTTA-TTCTTAAATTATTGATTTCTCATAATCGAGGATACTCCAAC
1 GGGATACTCCAA-CCC-GATTTATTTC-CAAAACATCAATTTCTCATAATCGGGGATACTCCAAC
*
1272092 CCCGTTATTTTCGAA
63 CCCGTTATTTCCGAA
* *
1272107 GGGATACTCCAATCCCGGTTTCATTTCCAAAACATCAATTTCTCTTAATCGGGGATACTCCAAC
1 GGGATACTCCAA-CCCGATTT-ATTTCCAAAACATCAATTTCTCATAATCGGGGATACTCCAAC
1272171 TCCGATTTTA
Statistics
Matches: 117, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
78 4 0.03
79 87 0.74
80 6 0.05
81 18 0.15
82 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (77 bp):
GGGATACTCCAACCCGATTTATTTCCAAAACATCAATTTCTCATAATCGGGGATACTCCAACCCC
GTTATTTCCGAA
Found at i:1272167 original size:51 final size:51
Alignment explanation
Indices: 1272106--1272272 Score: 178
Period size: 51 Copynumber: 3.3 Consensus size: 51
1272096 TTATTTTCGA
* * * *
1272106 AGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCAA-TTTCTCTTAATC
1 AGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCAATTTTC-CATAATC
* * *
1272157 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATC
1 AGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCATAATC
* * *
1272208 AGGGATACTCCAACTCCGATTTTATTTCCAAAGCACCGACTTTT-CACAATC
1 AGGGATACTCCAACTCCGATTTTATTTCCAAAACACC-AATTTTCCATAATC
* *
1272259 GGGGATATTCCAAC
1 AGGGATACTCCAAC
1272273 CCCGTTATTT
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
51 89 0.91
52 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (51 bp):
AGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCATAATC
Found at i:1272378 original size:76 final size:76
Alignment explanation
Indices: 1272208--1272431 Score: 214
Period size: 76 Copynumber: 2.9 Consensus size: 76
1272198 TTCCATAATC
* * * * * * * *
1272208 AGGGATACTCCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCGGGGATATTCCAAC
1 AGGGATACTCCAACCCCGGTTTTATTTCCAAAACATC-A-ATTTCTC-ATTGGGGATACTCCAAC
** *
1272273 CCCGTTATTTCTGA
63 CCCGTTACCTCCGA
* * * *
1272287 GGGGACACTCTAACCCCGGTTTTATTTCTAAAACATCAATTTCTCATTGGGGATACTCCAACCCC
1 AGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTCATTGGGGATACTCCAACCCC
1272352 GTTACCTCCGA
66 GTTACCTCCGA
* * * **
1272363 AGGGATACTCCAACCCCGGCTTTGTTTCCAAAATATTGATTTCTCATAATCGGGGATACTCCAAC
1 AGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTCAT--T-GGGGATACTCCAAC
1272428 CCCG
63 CCCG
1272432 GTTTTATTTC
Statistics
Matches: 118, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
76 64 0.54
77 5 0.04
78 2 0.02
79 47 0.40
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (76 bp):
AGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTCTCATTGGGGATACTCCAACCCC
GTTACCTCCGA
Found at i:1272424 original size:51 final size:51
Alignment explanation
Indices: 1272364--1272585 Score: 232
Period size: 51 Copynumber: 4.3 Consensus size: 51
1272354 TACCTCCGAA
* * * * *
1272364 GGGATACTCCAACCCCGGCTTTGTTTCCAAAATATTGATTTCTCATAATCG
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTCTCATAATCG
*
1272415 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTT-TCCATAATCG
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTCT-CATAATCG
* *
1272466 GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAAATTTC-CATTAATCG
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACA-CTAATTTCTCA-TAATCG
* *** * * * * *
1272518 GGGATACTCCAACTCTAATTTTATTTCTAAAAACACCAATTTTTCACAATTG
1 GGGATACTCCAACCCCGGTTTTATTTC-CAAAACACTAATTTCTCATAATCG
*
1272570 AGGATACTCCAACCCC
1 GGGATACTCCAACCCC
1272586 ATTATTTCAT
Statistics
Matches: 143, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
50 1 0.01
51 77 0.54
52 57 0.40
53 8 0.06
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTCTCATAATCG
Found at i:1272425 original size:257 final size:259
Alignment explanation
Indices: 1271891--1272530 Score: 858
Period size: 257 Copynumber: 2.5 Consensus size: 259
1271881 AATTCTCCAC
* *
1271891 AATCGGGGATATTCCAACTCCGATTTTATTT-TCAAAACACTAATTTTCTATAATCGGGGATACT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCT-AAAACACTAATTTTCCATAATCGGGGATACT
*
1271955 CCAACTCCGATTTTATTTCCAAAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGTTA
65 CCAACTCCGATTTTATTTCC--AAAACACCAAATTTTCACAATCGGGGATACTCCAACCCCGTTA
* * ** **
1272020 TTTCCGAGGGGATACTCCAACCCCTGCTTTATTCTTAAATTATTGATTTCTCATAATCGAGGATA
128 TTTCCGAGGGGACACTCCAACCCCGGCTTTATTCTTAAAACATCAATTTCTCAT-ATCGAGGATA
** * *
1272085 CTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCCCGGTTTCATTTCCAAAACATCAATTTCT
192 CTCCAACCCCGTTACCTCCGAAGGGATACTCCAACCCCGGTTTCATTTCCAAAACATCAATTTCT
*
1272150 CTT
257 CAT
** *
1272153 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATCAGGGATACTC
1 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTC
* * * *
1272218 CAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCGGGGATATTCCAACCCCGTTATTT
66 CAACTCCGATTTTATTTCCAAAACACCAAATTTTCACAATCGGGGATACTCCAACCCCGTTATTT
* * * *
1272283 CTGAGGGGACACTCTAACCCCGGTTTTATT-TCTAAAACATCAATTTCTCAT-T-GGGGATACTC
131 CCGAGGGGACACTCCAACCCCGGCTTTATTCT-TAAAACATCAATTTCTCATATCGAGGATACTC
* * **
1272345 CAACCCCGTTACCTCCGAAGGGATACTCCAACCCCGGCTTT-GTTTCCAAAATATTGATTTCTCA
195 CAACCCCGTTACCTCCGAAGGGATACTCCAACCCCGG-TTTCATTTCCAAAACATCAATTTCTCA
1272409 T
259 T
* *
1272410 AATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTC
1 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTC
* * * * *
1272475 CAACCCCGGTTTTATTTTCAAAACACCAAATTTCCATTAATCGGGGATACTCCAAC
66 CAACTCCGATTTTATTTCCAAAACACCAAATTTTCA-CAATCGGGGATACTCCAAC
1272531 TCTAATTTTA
Statistics
Matches: 332, Mismatches: 42, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
257 150 0.45
258 21 0.06
259 1 0.00
260 82 0.25
262 77 0.23
263 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (259 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTAATTTTCCATAATCGGGGATACTC
CAACTCCGATTTTATTTCCAAAACACCAAATTTTCACAATCGGGGATACTCCAACCCCGTTATTT
CCGAGGGGACACTCCAACCCCGGCTTTATTCTTAAAACATCAATTTCTCATATCGAGGATACTCC
AACCCCGTTACCTCCGAAGGGATACTCCAACCCCGGTTTCATTTCCAAAACATCAATTTCTCAT
Found at i:1272542 original size:103 final size:103
Alignment explanation
Indices: 1272364--1272585 Score: 268
Period size: 103 Copynumber: 2.2 Consensus size: 103
1272354 TACCTCCGAA
* * ***
1272364 GGGATACTCCAACCCCGGCTTTGTTTCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGCTTTATTTCCAAAACACAAATTTCTCATAATCGGGGATACTCCAACC
** * *
1272429 CCGGTTTTATTTCT-AAAACACTAATTTTCCATAATCG
66 CCAATTTTATTTCTAAAAACACCAATTTTCCACAATCG
* *
1272466 GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAAATTTC-CATTAATCGGGGATACTCCAA
1 GGGATACTCCAACCCCGGCTTTATTTCCAAAACA-CAAATTTCTCA-TAATCGGGGATACTCCAA
* * * *
1272530 CTCTAATTTTATTTCTAAAAACACCAATTTTTCACAATTG
64 CCCCAATTTTATTTCTAAAAACACCAATTTTCCACAATCG
*
1272570 AGGATACTCCAACCCC
1 GGGATACTCCAACCCC
1272586 ATTATTTCAT
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
102 32 0.32
103 35 0.35
104 34 0.34
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (103 bp):
GGGATACTCCAACCCCGGCTTTATTTCCAAAACACAAATTTCTCATAATCGGGGATACTCCAACC
CCAATTTTATTTCTAAAAACACCAATTTTCCACAATCG
Found at i:1272603 original size:28 final size:28
Alignment explanation
Indices: 1272571--1272646 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
1272561 TCACAATTGA
*
1272571 GGATACTCCAACCCCATTA-TTTC-ATCGG
1 GGATACTCCAACCCCATTACCTTCGA--GG
* *
1272599 GGATACTCCAACCTCGTTACCTTCGAGG
1 GGATACTCCAACCCCATTACCTTCGAGG
*
1272627 GGATACTCTAACCCCATTAC
1 GGATACTCCAACCCCATTAC
1272647 TATCTGCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 36 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (28 bp):
GGATACTCCAACCCCATTACCTTCGAGG
Found at i:1273740 original size:79 final size:79
Alignment explanation
Indices: 1273609--1273833 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 79
1273599 CGTCGCGACA
* * * * * * *
1273609 GAGGGGATACTCCAACCCCAGCTTTATTTCTAAAATATTAATTTCTCATAATCAGGAATACTCCA
1 GAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCA
*
1273674 ACCCCATTATTTCT
66 ACCCCATTATTTCC
* *
1273688 GAGGGGATACTCCAACCGCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCC
1 GAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCA
* * *
1273753 ATCTCGTTATTTCC
66 ACCCCATTATTTCC
* * * * * * * * *
1273767 CATGGGATACTCCAACCTCGATTTTATTTGTAAAACACCAATTCTCCACAATCGGGGATACTCCA
1 GAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCA
1273832 AC
66 AC
1273834 TCCGATTTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
79 122 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (79 bp):
GAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCA
ACCCCATTATTTCC
Found at i:1273846 original size:51 final size:51
Alignment explanation
Indices: 1273770--1273885 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 51
1273760 TATTTCCCAT
**
1273770 GGGATACTCCAACCTCGATTTTATTTGTAAAACACCAA-TTCTCCACAATCG
1 GGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTCT-CACAATCG
*
1273821 GGGATACTCCAA-CTCCGATTTTATTTCCAAAACACCGATTTCTCACAATCG
1 GGGATACTCCAACCT-CGATTTTATTTCCAAAACACCAATTTCTCACAATCG
1273872 GGGATACTCCAACC
1 GGGATACTCCAACC
1273886 CCGTTATTTC
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
50 2 0.03
51 52 0.88
52 5 0.08
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (51 bp):
GGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTCTCACAATCG
Found at i:1273873 original size:130 final size:125
Alignment explanation
Indices: 1273690--1274089 Score: 399
Period size: 130 Copynumber: 3.1 Consensus size: 125
1273680 TTATTTCTGA
* * * *
1273690 GGGGATACTCCAACCGCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCCAT
1 GGGGATACTCCAACC-CGGTTTTATTTCTAAAACATCGATTTCTCATAATCGGGGATACTCCAAC
* * *
1273755 CTCGTTATTTCCCATGGGATACTCCAACCTCGATTTTATTTGTAAAACACCAATTCTCCACAATC
65 CCCGTTATTT--CATGGGATACTCCAACCTCGATTTTATTT-TAAAACATCGATT-TCCACAATC
* * * *
1273820 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTCTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAAC-CCGGTTTTATTTCTAAAACATCGATTTCTCATAATCGGGGATACTCCAAC
* ** * * *
1273885 CCCGTTATTTCATCGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
65 CCCGTTATTTCAT--GGGATACTCCAACCTCGATTTTATTT-TAAAACATCGATTTC-CACAATC
* ** * * *
1273950 GGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATCGGGGATAGTCCAAC
1 GGGGATACTCCAA-CCCGGTTTTATTTCTAAAACATCGATTTCTCATAATCGGGGATACTCCAAC
* * * * *
1274015 CCCATTATTTTCACGGGGATACTCCAATCCT-GATTTT-TTTTTAAACATCGATTTTCTATAATC
65 CCCGTTA-TTTCA-TGGGATACTCCAA-CCTCGATTTTATTTTAAAACATCGA-TTTCCACAATC
1274078 GGGGATACTCCA
1 GGGGATACTCCA
1274090 GCCCTGTTGT
Statistics
Matches: 221, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
128 26 0.12
129 9 0.04
130 177 0.80
131 9 0.04
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (125 bp):
GGGGATACTCCAACCCGGTTTTATTTCTAAAACATCGATTTCTCATAATCGGGGATACTCCAACC
CCGTTATTTCATGGGATACTCCAACCTCGATTTTATTTTAAAACATCGATTTCCACAATC
Found at i:1273900 original size:79 final size:79
Alignment explanation
Indices: 1273817--1273967 Score: 239
Period size: 79 Copynumber: 1.9 Consensus size: 79
1273807 ATTCTCCACA
* *
1273817 ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTCTCACAATCGGGGATACTCC
1 ATCGGGGATACTCCAACCCCGACTTTATTTCCAAAACACCGATTTCTCACAATCGGGGATACTCC
1273882 AACCCCGTTATTTC
66 AACCCCGTTATTTC
* * ** *
1273896 ATCGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCGGGGATACTTC
1 ATCGGGGATACTCCAACCCCGACTTTATTTCCAAAACACCGATTTCTCACAATCGGGGATACTCC
1273961 AACCCCG
66 AACCCCG
1273968 GCCTTATTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 65 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGACTTTATTTCCAAAACACCGATTTCTCACAATCGGGGATACTCC
AACCCCGTTATTTC
Found at i:1273956 original size:51 final size:51
Alignment explanation
Indices: 1273896--1274017 Score: 199
Period size: 51 Copynumber: 2.4 Consensus size: 51
1273886 CCGTTATTTC
*
1273896 ATCGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACA
1 ATCGGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACA
* * *
1273947 ATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATA
1 ATCGGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACA
*
1273998 ATCGGGGATAGTCCAACCCC
1 ATCGGGGATACTCCAACCCC
1274018 ATTATTTTCA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (51 bp):
ATCGGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACA
Found at i:1276168 original size:4 final size:4
Alignment explanation
Indices: 1276159--1276183 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1276149 TATTTTAAGG
1276159 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
1276184 TTTTGTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:1277874 original size:12 final size:12
Alignment explanation
Indices: 1277857--1277881 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1277847 GTATCGACTT
1277857 ATCGAAGGTAGA
1 ATCGAAGGTAGA
1277869 ATCGAAGGTAGA
1 ATCGAAGGTAGA
1277881 A
1 A
1277882 CTGACGGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.32, T:0.16
Consensus pattern (12 bp):
ATCGAAGGTAGA
Found at i:1287663 original size:55 final size:54
Alignment explanation
Indices: 1287485--1288294 Score: 888
Period size: 55 Copynumber: 14.4 Consensus size: 54
1287475 CCTTTCGCCC
** *
1287485 TTTAGTCCTCAAAGAGCAGGACGTTTTTTAAAGCCCACACAAGTTGGTGGCACTT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAC-T
*
1287540 TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATT
1 TT-TAGTCCTCAAAGAGCAGGACG------CCTTTCAAAGCCCACACAAGTTGGTGGCACT
* **
1287601 TTCTAGTCCTCAAAGAGCATGATACCTTTCAAAGCCCACACAAGTTGGTGGCACCT
1 TT-TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CT
* * *
1287657 TTTAGTCCTCAAAGAGTAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** * * *
1287711 TCCCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCTACACGAGTTGGTGGCA-T
1 T-TTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
* *
1287765 TTTCCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAGAAGTTGGTGGCACT
1 TTT--AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** *
1287821 TCCCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACT
1 T-TTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** *
1287876 TCCCAGTCCTCAAAGAGCAGGACGCCTTTGAAAGCCCACACAAGTTGGTGGCACT
1 T-TTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** * *
1287931 TCCCAGTCCTTAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACT
1 T-TTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** *
1287986 TCCCAGTCCTCAAAGAGCAGGACGCCTTTGAAAGCCCACACAAGTTGGTGGCACT
1 T-TTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** * * *
1288041 TCCGAGTCCTCAAAGAGCAGGATGCCTCTT-AAAGCCCACATAAGTTGGTGGCATT
1 T-TTAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCACT
1288096 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-T
1 TTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
* * * *
1288150 TTTCCAGTCCTCAAAGAGTAGGATGCTTTCTCTTTGCAAAGCCCATACACGTTGGTGGCACCT
1 TTT--AGTCCTCAAAGAGCAGGA--C--GC-CTTT-CAAAGCCCACACAAGTTGGTGGCA-CT
* * * *
1288213 TCTAGTCCTCATAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCATTT
1 TTTAGTCCTCAAAGAGCAGGACG-----CC-TTTCAAAGCCCACACAAGTTGGTGGCA-CT
1288274 TTTAGTCCTCAAAGAGCAGGA
1 TTTAGTCCTCAAAGAGCAGGA
1288295 TGCACTTTAT
Statistics
Matches: 664, Mismatches: 60, Indels: 56
0.85 0.08 0.07
Matches are distributed among these distances:
54 11 0.02
55 483 0.73
56 28 0.04
57 1 0.00
59 2 0.00
60 4 0.01
61 102 0.15
62 30 0.05
63 3 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (54 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
Found at i:1287805 original size:165 final size:164
Alignment explanation
Indices: 1287485--1288294 Score: 1023
Period size: 165 Copynumber: 4.8 Consensus size: 164
1287475 CCTTTCGCCC
* * *
1287485 TTTAGTCCTCAAAGAGCAGGACGTTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
1 TTTAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCCAGTCCT
*
1287550 CAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAA
65 CAAAGAGCAGGACG------CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAA
* **
1287615 GAGCATGATACCTTTCAAAGCCCACACAAGTTGGTGGCACCT
124 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CT
* *
1287657 TTTAGTCCTCAAAGAGTAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTT
1 TTTAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTC
* *
1287722 AAAGAGCAGGACGCCTTTCAAAGCCTACACGAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
66 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
* *
1287787 ACGCCTTTTAAAGCCCACAGAAGTTGGTGGCACT
131 ACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** *
1287821 TCCCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCT
1 T-TTAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCT
* * * *
1287886 CAAAGAGCAGGACGCCTTTGAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTTAAAGAGCAG
65 CAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAG
*
1287951 GACGCCTTTTAAAGCCCACACAAGTTGGTGGCACT
130 GACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
** * * *
1287986 TCCCAGTCCTCAAAGAGCAGGACGCCTTTGAAAGCCCACACAAGTTGGTGGCACTTCCGAGTCCT
1 T-TTAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCT
* * *
1288051 CAAAGAGCAGGATGCCTCTT-AAAGCCCACATAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCA
65 CAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCA
1288115 GGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-T
129 GGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
* * * *
1288150 TTTCCAGTCCTCAAAGAGTAGGATGCTTTCTCTTTGCAAAGCCCATACACGTTGGTGGCACCTT-
1 TTT--AGTCCTCAAAGAGCAGGA--C-GTCT-TTT--AAAGCCCACACAAGTTGGTGGCA-CTTC
* * * **
1288214 CTAGTCCTCATAGAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCATTTTTTAG
57 CCAGTCCTCAAAGAGCAGGACG-----CC-TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAG
1288279 TCCTCAAAGAGCAGGA
116 TCCTCAAAGAGCAGGA
1288295 TGCACTTTAT
Statistics
Matches: 572, Mismatches: 48, Indels: 31
0.88 0.07 0.05
Matches are distributed among these distances:
164 5 0.01
165 395 0.69
166 2 0.00
167 1 0.00
168 2 0.00
169 2 0.00
171 62 0.11
172 54 0.09
176 4 0.01
177 45 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (164 bp):
TTTAGTCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTC
AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
ACGCCTTTCAAAGCCCACACAAGTTGGTGGCACT
Found at i:1288974 original size:32 final size:32
Alignment explanation
Indices: 1288929--1289001 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
1288919 ACAAACAGTA
1288929 AATGTATCAATACATAAGTGTTGTATCGATAC
1 AATGTATCAATACATAAGTGTTGTATCGATAC
** * *
1288961 AATGTATTGATACATAAGTTTTGTATTGATAC
1 AATGTATCAATACATAAGTGTTGTATCGATAC
1288993 AATGTATCA
1 AATGTATCA
1289002 CTACGAAGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (32 bp):
AATGTATCAATACATAAGTGTTGTATCGATAC
Found at i:1291871 original size:13 final size:13
Alignment explanation
Indices: 1291853--1291879 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1291843 ACATTATGCT
1291853 TTGTATCGATACA
1 TTGTATCGATACA
1291866 TTGTATCGATACA
1 TTGTATCGATACA
1291879 T
1 T
1291880 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1291909 original size:20 final size:19
Alignment explanation
Indices: 1291863--1291919 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
1291853 TTGTATCGAT
*
1291863 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGC
*
1291882 TCATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
*
1291901 ACAATTGTATTGATACATG
1 AC-ATTGTATCGATACATG
1291920 AAACTGGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:1293628 original size:15 final size:15
Alignment explanation
Indices: 1293608--1293641 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1293598 ACCATCAAAG
1293608 ATGATGAAGATAATA
1 ATGATGAAGATAATA
* *
1293623 ATGATGATGATAATG
1 ATGATGAAGATAATA
1293638 ATGA
1 ATGA
1293642 AGTTGACTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (15 bp):
ATGATGAAGATAATA
Found at i:1300701 original size:19 final size:20
Alignment explanation
Indices: 1300677--1300730 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
1300667 ACATTATGCT
* **
1300677 TTGTATTGATACATGTTC-A
1 TTGTATCGATACATGCACAA
*
1300696 TTGTATCGATAAATGCACAA
1 TTGTATCGATACATGCACAA
1300716 TTGTATCGATACATG
1 TTGTATCGATACATG
1300731 AAACTGGTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGCACAA
Found at i:1302417 original size:476 final size:476
Alignment explanation
Indices: 1301524--1304580 Score: 3717
Period size: 476 Copynumber: 6.4 Consensus size: 476
1301514 TTACAAATTC
* * * *
1301524 CATGTATCCTAATGAAGGAAATGTGTTTTTGGACCCCAATCTTGAAAAGAATGGAGATTGTTGCA
1 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
* * * *
1301589 AGAATCAATGCTTATCTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
66 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
* * *
1301654 ATTTCCATGCATAAA-AAAGTCATCAATATTA-TTATCCTAATGAGGAGAATGTGTTTATAGTGT
131 ATTTCCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
1301717 CTAATGACAAAAAGAATGAAGATCACTACTAGAATCCATATTTATCTCATTTGAGGCACGAACTT
195 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* *
1301782 AGACTGTACAAAAATTGGTGGAAAAAAAGCCTTT-TTCACGAAACCAAAGCACCAATATCGAGTA
260 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-ACGAAACCAAAGCACCAATATCGAGTA
* * * *
1301846 TCCTAATGAGAAGTCTATGTTTATAGTGCCTAATCTTCAAAAGATTGGGGAATAGTATGAGTATT
324 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
* * * *
1301911 CAGGTTTTTCTTATTTAAGAGACAAACTTTGATTCAATAAAAAACGATGGAAAGAAAAGCTTTTC
389 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTC
* *
1301976 TTGCGACACTAAAGCATCATTGT
454 TTGCGACACCAAAGCATCAATGT
* * * * *
1301999 CGTGTATCCTAATGAAGGGAATGTGTTTTTGGAACCCAATATTGAAAAGATTGGAGATTGTTGCG
1 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
* * * * *
1302064 AGAATCGATGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAAGAATATTGGGCAAAAAAAAT
66 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
* * * * *
1302129 ATTTCCATGCAAAAGAAAATCCTCAATATCATTTATCCTAATGAGGAGATTGTGTTTACAATGCG
131 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
1302194 TAATTACAAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTA
196 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
1302259 GACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTACGAAACCAAAGCACCAACATCTAGTACC
261 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGAGTATC
* * * *
1302324 CCAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTATGAGTATTCA
326 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA
* * * * *
1302389 TGTTTGTCTTATTT-AGAAGATAAACTTTGATTTTATCAAAAAC-AGCGGAAAAAAAAGTTTTTC
391 TGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAACGA-TGGAAAGAAAAGCTTTTC
* * *
1302452 TTGTGACATCAAAACATCAATGT
454 TTGCGACACCAAAGCATCAATGT
* ** * * * * * *
1302475 CATGTATCCTAATGAAAGGAATGTGTTTTAAGTTCCCAATGC-TGAACATAATAGAGACTATTAC
1 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAAT-CTTGAAAAGAATAGAGATTGTTGC
* * * *
1302539 GAGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTTAAAGAAAATCGAGCAAAGAAAA
65 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAA
* * *
1302604 GATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATTA-TG
130 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTG
* * *
1302668 CCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTGTCATTTGCGGCACGAACT
194 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * * ** *
1302733 AAGACTATGCAAAAATTGATGGGGAAAAAGCCTTTCTTGTGAAACTAAAGCACCAATATC-ATGT
259 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGA-GT
* * * * * * * *
1302797 ATCCTATTTAGAAGACCATG-TT-TGGTGCCTGATCTTGAAAATAATAGTGAATAGTATGGGTAT
323 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
* * * * * * *
1302860 TCATGATTGTCTTATATGAGAGATAAACTTTCATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
388 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT
*
1302925 CTTGTGACACCAAAGCATCAATGT
453 CTTGCGACACCAAAGCATCAATGT
* **
1302949 CATGTATCCTAATGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTATG
1 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
* * * *
1303014 GGAATCGATGCTTTTCTTATTTAAGGGATGAACTTTGATTTTAAAGAATATTGGGCAAAGAAAAG
66 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
* * * * * * *
1303079 ATTTACATACAAAAGAAAATCATCAATATCAATTATTCTATTGAGGAGAATGTGTTTACAATGCC
131 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * *
1303144 TAATCATAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTGTCAATTAAGGCACGGACTTA
196 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
1303209 GACCTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTATGAAACCAAAGCACTAACATC-AGGTAT
261 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGA-GTAT
* ** *
1303272 CATAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAAT-GGGAATAGAATGAGTATTC
325 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTC
* * *
1303336 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTCGAAAGAAAAGCTTTTCT
390 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT
**
1303401 TATGACACCAAAGCATCAATGT
455 TGCGACACCAAAGCATCAATGT
** * * *
1303423 CATGTATCCTCCTGAAGAGAATGT-TTTCTTGGATCCCAATCTTGAAAA-AATAGAGATTATTGT
1 CATGTATCCTAATGAAGGGAATGTGTTT-TTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGC
* * * *
1303486 GAGAATCAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAAGAATATTGGGCAAAGAAAA
65 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAA
* * * * *
1303551 TATTTCCATGCAAAAGAAAATCATCAATATCTTTTATTCGAATGAGGAGAATGTGTTTACAGTGC
130 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
1303616 CGAATCACAAAATGAATAAACATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTT
195 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
** * * * * *
1303681 AGACCATATAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAGACCAAAGTACCAATATCGGGTAT
260 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGAGTAT
* ** ** * * * *
1303746 CCTAATGAGAACACTGCGTTTATTATG-CTAATCCTGAAAATAACGAGGAATAGTATGAGTATTC
325 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTC
* * * * * *
1303810 ATGTTTATCTTATTTAAGATACAAACTTTGATTCTATCAAAAATGGTGGGAAGAAAAGCTTTCCT
390 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT
1303875 TGC-ATCACCAAAGCATCAATGT
455 TGCGA-CACCAAAGCATCAATGT
* * * * * * *
1303897 CATGTATCCTAATGAAGGGAATGAGTTTTTAGTTCCCAACCTTGAAAAGAATGGAGATTGTTACA
1 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
* * *
1303962 AGGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTCATATT-AAGTAAAATAGGGCAAAGAAA
66 A-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAA
* * * * * * *
1304026 ATATTTTCATGCAAAATAAAATCATTAATATC-TTTAATCTTAAAGAGGAGAATATGTTTATAGT
129 AGATTTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTTTATAGT
* * * * ** * *
1304090 GCCTAATCACAAAATGAATGATGATCAATACTAGAATCCTTATTTGGATCACTTGAGGCATGAAC
193 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * ** * * * * *
1304155 ATAGACTTTACAAAAATTGGTGGGGAAAAAGGTTTTCTTGCGAAACCAAAGTATCATTATCGGGT
258 TTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGAGT
* * * *
1304220 ATCCTAATGAGTAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTAAGAGTAT
323 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
* * * *
1304285 TCTTGTTTGTCTTATTTAAGAGACAAACATTGATTGTAACAAAAACGATGGAAAGAAAAGCTTTT
388 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT
1304350 CTTGCGACACCAAAGCATCAATGT
453 CTTGCGACACCAAAGCATCAATGT
* * * * *
1304374 CATGTATTCTAATGAAAGGAATGTGTTTTTGGATCCCAATCTTCAAAAGAATAGAGATTGTAGCA
1 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
* * *
1304439 AGAATCGATACTTGTCTTATTTAAGGGATGAACTTTCATATT-AAGTAAAATAGGGCAAAGAAAA
66 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAAA
* * * * * * *
1304503 GATTTCCACGCAATATAAAATCTTCAATATC-TTTAATCTTAATAAGGAGAATATGTTTATAGTG
130 GATTTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTTTATAGTG
1304567 CCTAATCACAAAAT
194 CCTAATCACAAAAT
1304581 TTGAGGCACG
Statistics
Matches: 2221, Mismatches: 335, Indels: 51
0.85 0.13 0.02
Matches are distributed among these distances:
473 277 0.12
474 672 0.30
475 187 0.08
476 920 0.41
477 164 0.07
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGAGTATC
CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATGT
Found at i:1303074 original size:159 final size:155
Alignment explanation
Indices: 1301524--1304503 Score: 645
Period size: 159 Copynumber: 18.8 Consensus size: 155
1301514 TTACAAATTC
* * *
1301524 CATGTATCCTAATGA-AGGAAATGTGTTTTTGGA-CCCCAATCTTGAAAAGAATGGAGATTGTTG
1 CATGTATCCTAATGAGA-G-AATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTA
** * * * ** *
1301587 CAAGAATCAATGCTTATCTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
63 TGAGAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAA--AAAATTGGGCAAAGAAA
* * *
1301652 AG-ATTTC-CATGCATAA-AAAAGTCATCAATAT
125 AGCTTTTCTTATG-A-AACCAAAG-CATCAATAT
* * * * * **** * *
1301683 TAT-TATCCTAATGAGGAGAATGTGTTTATAG-TGTCTAATGACAAAAAGAATGAAGATCACTAC
1 CATGTATCCTAATGA-GAGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAATG-AGATTATTA-
* * * * * * * * * *
1301746 T-AGAATCCATATTTATCTCATTTGAGGCACGAACTTAGACTGTACAAAAATTGGTGGAAA-AAA
63 TGAGAAT-CATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTA-AAAAATTGG-GCAAAGAAA
* * *
1301809 AGCCTTTT-TCACGAAACCAAAGCACCAATAT
125 AG-CTTTTCTTATGAAACCAAAGCATCAATAT
** * * * * * * * * *
1301840 CGA-GTATCCTAATGAGAAGTCTATGTTTATAG-TGCCTAATCTTCAAAAGATTGGGGAATAGTA
1 C-ATGTATCCTAATGAG-AGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTA
* * * * * *
1301903 TGAGTATTCAGGTTTTTCTTATTTAAGAGACAAACTTTGATTCAATAAAAAA-CGATGG-AAAGA
63 TGAG-AATCATGTTTGTCTTATTTAAGGGACAAACTTTGATT--TTAAAAAATTG--GGCAAAGA
** * * * *
1301966 AAAGCTTTTCTTGCGACACTAAAGCATCATTGT
123 AAAGCTTTTCTTATGAAACCAAAGCATCAATAT
* * * * * * **
1301999 CGTGTATCCTAATGAAGGGAATGTGTTTTTGGA-ACCCAATATTGAAAAGATTGGAGATTGTTGC
1 CATGTATCCTAATG-AGAGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTAT
* * **
1302063 GAGAATCGATGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAAGAATATTGGGCAAA-AAAA
64 GAGAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAAA-AA-ATTGGGCAAAGAAAA
* * ** * *
1302127 -ATATTTC-CATGCAAAAGAAAATCCTCAATAT
126 GCT-TTTCTTATG--AAACCAAAGCATCAATAT
* * *** ** ** **
1302158 CATTTATCCTAATGAGGAGATTGTG-TTTACAATGCGTAAT-TACAAAATGAATGAAGATCCTTA
1 CATGTATCCTAATGA-GAGAATGTGTTTTTGGATGCCCAATCTTGAAAA-GAATG-AGATTATTA
* * * * * * *
1302221 CT-AGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAA-AA
63 -TGAGAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTA-AAAAATTGG-GCAAAGAA
* * * *
1302284 AAGCCTTTCTTACGAAACCAAAGCACCAACAT
124 AAGCTTTTCTTATGAAACCAAAGCATCAATAT
* * * * * * * * * *
1302316 C-TAGTACCCCAAAGAGAAGACTATGTTTATGG-TGCCTAATCTTGGAAAGAATGGGGATTAGTA
1 CAT-GTATCCTAATGAG-AGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTA
* * * ** *
1302379 TGAGTATTCATGTTTGTCTTATTT-AGAAGATAAACTTTGATTTTATCAAAAACAGCGG-AAAAA
63 TGAG-AATCATGTTTGTCTTATTTAAG-GGACAAACTTTGATTTTA--AAAAATTG-GGCAAAGA
* * * * * *
1302442 AAAGTTTTTCTTGTGACATCAAAACATCAATGT
123 AAAGCTTTTCTTATGAAACCAAAGCATCAATAT
* ** * * * *
1302475 CATGTATCCTAATGAAAGGAATGTGTTTTAAG-TTCCCAATGC-TGAACATAATAGAGACTATTA
1 CATGTATCCTAATGAGA-GAATGTGTTTTTGGATGCCCAAT-CTTGAAAAGAAT-GAGATTATTA
* * * * * *
1302538 CGAGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTTAAAGAAAATCGAGCAAAGAAA
63 TGAGAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTT-AA-AAAATTGGGCAAAGAAA
* * ** *
1302603 AGATTTTC--AAGCAAAAGAAAATCATCAATAT
125 AGCTTTTCTTATG--AAACCAAAGCATCAATAT
* * * ** *
1302634 CATTTATCCTAATAAGGAGAATGTGTTTATT--ATGCCTAATC-ACAAAATGAATGACGATCATT
1 CATGTATCCTAATGA-GAGAATGTGTTT-TTGGATGCCCAATCTTGAAAA-GAATGA-GATTATT
* * ** * * ** * ** **
1302696 ACT-AGAATCCATGTTTGTGTCATTTGCGGCACGAACTAAGACTATGCAAAAATTGATGG-GGA-
62 A-TGAGAAT-CATGTTTGTCTTATTTAAGGGACAAACTTTGA-TTTTAAAAAATTG--GGCAAAG
* * * *
1302758 AAAAGCCTTTCTTGTGAAACTAAAGCACCAATAT
122 AAAAGCTTTTCTTATGAAACCAAAGCATCAATAT
* * *** ** * * * *
1302792 CATGTATCCTATTTAGAAGACCATG--TTTGG-TGCCTGATCTTGAAAATAATAGTGAATAGTAT
1 CATGTATCCTAATGAG-AGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTAT
* * * * * * * * * *
1302854 GGGTATTCATGATTGTCTTATATGAGAGATAAACTTTCATTCTATCAAAAA-TGGTGGAAAGAAA
64 GAG-AATCATGTTTGTCTTATTTAAGGGACAAACTTTGATT-T-TAAAAAATTGG-GCAAAGAAA
* * *
1302918 AGCTTTTCTTGTGACACCAAAGCATCAATGT
125 AGCTTTTCTTATGAAACCAAAGCATCAATAT
*
1302949 CATGTATCCTAATGA-AGGAAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATAGAGATTGTTA
1 CATGTATCCTAATGAGA-G-AATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTA
* **
1303012 TGGGAATCGATGCTTT-TCTTATTTAAGGGATGAACTTTGATTTTAAAGAATATTGGGCAAAGAA
63 TGAGAATC-ATG-TTTGTCTTATTTAAGGGACAAACTTTGATTTTAAA-AA-ATTGGGCAAAGAA
* * * ** ** *
1303076 AAGATTTACATACAAAAGAAAATCATCAATAT
124 AAGCTTTTCTTATGAAACCAAAGCATCAATAT
* * *** * * * *
1303108 CAAT-TATTCTATTGAGGAGAATGTG-TTTACAATGCCTAATCAT-AAAATGAATGAAAATCATT
1 C-ATGTATCCTAATGA-GAGAATGTGTTTTTGGATGCCCAATCTTGAAAA-GAATG-AGATTATT
* * * * ** * ** *
1303170 ACT-AGAATCCATGTTTGTGTCAATTAAGGCACGGACTTAGACCTTACAAAAATTGGTG-GAA-A
62 A-TGAGAAT-CATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTA-AAAAATTGG-GCAAAGA
* *
1303232 AAAGCCTTTCTTATGAAACCAAAGCA-CTAACAT
123 AAAGCTTTTCTTATGAAACCAAAGCATC-AATAT
* * * * * * ** * * **
1303265 CAGGTATCATAATGAGAAGACTATGTTTATGG-TGCCTAATCCAGAAAAGAATGGGAATAGAATG
1 CATGTATCCTAATGAG-AGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAATGAGATTATTATG
* * * *
1303329 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAA-CGGTCGAAAGAAAA
65 AG-AATCATGTTTGTCTTATTTAAGGGACAAACTTTGATT-T-TAAAAAATTGGGC-AAAGAAAA
* *
1303393 GCTTTTCTTATGACACCAAAGCATCAATGT
126 GCTTTTCTTATGAAACCAAAGCATCAATAT
** *
1303423 CATGTATCCTCCTGAAGAGAATGT-TTTCTTGGAT-CCCAATCTTGAAAA-AATAGAGATTATTG
1 CATGTATCCTAATG-AGAGAATGTGTTT-TTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTA
* *
1303485 TGAGAATCAATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAAGAATATTGGGCAAAGAAA
63 TGAGAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAAA-AA-ATTGGGCAAAGAAA
* ** *
1303550 A--TATTTC-CATGCAAAAGAAAATCATCAATAT
125 AGCT-TTTCTTATG--AAACCAAAGCATCAATAT
* * * * *** * ** * * *
1303581 CTTTTATTCGAATGAGGAGAATGTGTTTACAG-TGCCGAATC-ACAAAATGAATAAACATCATTA
1 CATGTATCCTAATGA-GAGAATGTGTTTTTGGATGCCCAATCTTGAAAA-GAAT-GAGATTATTA
* * * * * * *** **
1303644 CT-AGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACCATATAAAAATTGGTGGGAA-AA
63 -TGAGAAT-CATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTA-AAAAATTGG-GCAAAGAA
* ** * * *
1303707 AAGCCTTTCTTGCGAGACCAAAGTACCAATAT
124 AAGCTTTTCTTATGAAACCAAAGCATCAATAT
** * * * * * * *
1303739 CGGGTATCCTAATGAGA-ACACTGCGTTTATT--ATG-CTAATCCTGAAAATAACGAGGAATAGT
1 CATGTATCCTAATGAGAGA-A-TGTGTTT-TTGGATGCCCAATCTTGAAAAGAATGA-GATTATT
* * ** *
1303800 ATGAGTATTCATGTTTATCTTATTTAAGATACAAACTTTGATTCTATCAAAAATGGTGGG--AAG
62 ATGAG-AATCATGTTTGTCTTATTTAAGGGACAAACTTTGATT-T-TAAAAAAT--TGGGCAAAG
* * *
1303863 AAAAGC-TTTCCT-TGCATCACCAAAGCATCAATGT
122 AAAAGCTTTTCTTATG-A-AACCAAAGCATCAATAT
* * * * * * *
1303897 CATGTATCCTAATGAAGGGAATGAGTTTTTAG-TTCCCAACCTTGAAAAGAATGGAGATTGTTAC
1 CATGTATCCTAATG-AGAGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTAT
* * ** * * *
1303961 AAGGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTCATATTAAGTAAAATAGGGCAAAGAAA
64 GA-GAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAA--AAAATTGGGCAAAGAAA
** ** * *
1304026 ATATTTTC--ATGCAAAATAAAATCATTAATAT
125 AGCTTTTCTTATG--AAACCAAAGCATCAATAT
* * * * * * * ** * *
1304057 C-TTTAATCTTAAAGAGGAGAATATGTTTATAG-TGCCTAATC-ACAAAATGAATGATGATCAAT
1 CATGT-ATCCTAATGA-GAGAATGTGTTTTTGGATGCCCAATCTTGAAAA-GAATGA-GATTATT
* * ** * * * * ** * * * ***
1304119 ACT-AGAATCCTTATTTGGATCACTTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGGA-A
62 A-TGAGAAT-CATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTA-AAAAATTGG-GCAAAGA
* ** * *
1304182 AAAGGTTTTCTTGCGAAACCAAAGTATCATTAT
123 AAAGCTTTTCTTATGAAACCAAAGCATCAATAT
** * * * * * * * *
1304215 CGGGTATCCTAATGAGTAGACTATGTTTATGG-TGCCTAATCTCGAAAAGAATGGGGATTAGTAA
1 CATGTATCCTAATGAG-AGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTAT
* * * * * **
1304279 GAGTATTCTTGTTTGTCTTATTTAAGAGACAAACATTGATTGTAACAAAAACGATGG-AAAGAAA
64 GAG-AATCATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAA-AAAATTG--GGCAAAGAAA
** * *
1304343 AGCTTTTCTTGCGACACCAAAGCATCAATGT
125 AGCTTTTCTTATGAAACCAAAGCATCAATAT
* * * *
1304374 CATGTATTCTAATGAAAGGAATGTGTTTTTGGAT-CCCAATCTTCAAAAGAATAGAGATT-GTA-
1 CATGTATCCTAATGAGA-GAATGTGTTTTTGGATGCCCAATCTTGAAAAGAAT-GAGATTATTAT
** ** * * *
1304436 GCAAGAATCGATACTTGTCTTATTTAAGGGATGAACTTTCATATTAAGTAAAATAGGGCAAAGAA
64 G--AGAATC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAA--AAAATTGGGCAAAGAA
1304501 AAG
124 AAG
1304504 ATTTCCACGC
Statistics
Matches: 1991, Mismatches: 627, Indels: 406
0.66 0.21 0.13
Matches are distributed among these distances:
154 1 0.00
155 7 0.00
156 89 0.04
157 237 0.12
158 701 0.35
159 805 0.40
160 145 0.07
161 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (155 bp):
CATGTATCCTAATGAGAGAATGTGTTTTTGGATGCCCAATCTTGAAAAGAATGAGATTATTATGA
GAATCATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTAAAAAATTGGGCAAAGAAAAGCTTT
TCTTATGAAACCAAAGCATCAATAT
Found at i:1305412 original size:158 final size:155
Alignment explanation
Indices: 1304763--1305468 Score: 414
Period size: 158 Copynumber: 4.5 Consensus size: 155
1304753 TAATTCCATT
* * * *
1304763 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCA-ACCCTAAAGCATCAATGTCATGTATCCTAATGA
1 AAAATAGGTGCAAAGAAAAGATTTTCTTGCACA-CC-AAAGCATCAATATCATGTATCCTAATG-
* * * ** * * * *
1304827 ACGGAATGTGTTTTTGGACCCCAACCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCATGT
63 AGGGAATGTATTTTAGGTTCCCAATCTTGAAAAGAATGGAAATTATTACGAGAATCGATGCTTAT
1304892 CTTATTTAAGAGATGAACTTTGATCTTAAA
128 CTTATTTAAGAGATGAACTTTGAT-TT-AA
* ** * * *
1304922 GAAAATACG-GCAAAGAAAAGATTTTCTTGCACAAGAAAATCATCAATATTATTTATCCTAATGA
1 -AAAATAGGTGCAAAGAAAAGATTTTCTTGCAC-ACCAAAGCATCAATATCATGTATCCTAATGA
* ** * * ** * *
1304986 GGAGAATGTATTTATA-GTAT-CTAATCACGAAAAGAAT-GAAGATCACTACTCGAATCCATGTT
64 GG-GAATGTATTT-TAGGT-TCCCAATCTTGAAAAGAATGGAA-ATTATTACGAGAATCGATGCT
** * * *
1305048 TATCTCGTTTGAG-GCACGAACTTAGACTTTACA
125 TATCTTATTTAAGAG-ATGAACTTTGA-TTTA-A
* * ** * * * * **
1305081 AAAATTGGTG-AAAAAAAAGCCTTTCTTGTGAAACCAAAACACCAATATCGGGTATCCTAATGA-
1 AAAATAGGTGCAAAGAAAAGATTTTCTTG-CACACCAAAGCATCAATATCATGTATCCTAATGAG
* * * * * * * * ** *
1305144 -GAAGTCTATGTTTATGGTGCCTAATCTTGAAAAGATTAGGGAA-TAGTATGAGTATTTATGTTT
65 GGAA-TGTAT-TTTA-GGTTCCCAATCTTGAAAAGAAT-GGAAATTATTACGAGAATCGATGCTT
* * * *
1305207 GTCTAATTTAAGAGATAAACTTTGATTCAA
126 ATCTTATTTAAGAGATGAACTTTGATTTAA
* * *
1305237 TCAAAA-ACGGTGGAAAGAAAAGATTTTCTTGCACACCAAAGCATTAATGTCATGTATCCTAATG
1 --AAAATA-GGTGCAAAGAAAAGATTTTCTTGCACACCAAAGCATCAATATCATGTATCCTAATG
* * * *
1305301 AAGGGAATGTATTTTAGGTTCCCAATCTTGAAAAGAATGGAAATTGTTTCTAGAATCGATACTTA
63 -AGGGAATGTATTTTAGGTTCCCAATCTTGAAAAGAATGGAAATTATTACGAGAATCGATGCTTA
*
1305366 TCTTATTTAAGGGATGAACTTTGATATTAA
127 TCTTATTTAAGAGATGAACTTTGAT-TTAA
* ** * *
1305396 GTAAAATAGG-GCAAAG-AAAGATTTT-TATGCAAAAAAAAATCATCAATATCATTTATCCTAAT
1 --AAAATAGGTGCAAAGAAAAGATTTTCT-TGC-ACACCAAAGCATCAATATCATGTATCCTAAT
1305458 GAGGAGAATGT
62 GAGG-GAATGT
1305469 GTTTATAGTG
Statistics
Matches: 402, Mismatches: 112, Indels: 66
0.69 0.19 0.11
Matches are distributed among these distances:
155 3 0.01
156 8 0.02
157 24 0.06
158 214 0.53
159 134 0.33
160 15 0.04
161 4 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (155 bp):
AAAATAGGTGCAAAGAAAAGATTTTCTTGCACACCAAAGCATCAATATCATGTATCCTAATGAGG
GAATGTATTTTAGGTTCCCAATCTTGAAAAGAATGGAAATTATTACGAGAATCGATGCTTATCTT
ATTTAAGAGATGAACTTTGATTTAA
Found at i:1307654 original size:948 final size:951
Alignment explanation
Indices: 1304579--1308393 Score: 4731
Period size: 948 Copynumber: 4.1 Consensus size: 951
1304569 TAATCACAAA
* * * * * *
1304579 ATTTGAGGCACGGATTTAGACTT-CACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCAAAATCAA
1 ATTTGAGGCACGAATTTAGA-TTGTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * * * *** *
1304643 AGCATCAATATCGTGTATCCTTATGAGAAGACTACGTTTATGATGCCTAATCCCGAAAAGAATGG
65 AGCACCAATATCGAGTAT-CTTATGAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGA
* ** * * * * * *
1304708 GGATTAGTATGTCTATTCA-TG-TTGTTTTATTTAAGAGACAAACTTTAATTCCATTAAAATTGG
129 GGAATAGTATGAGTATT-ATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGG
* * *** *
1304771 TGGAAAGAAAAGCTTTTCTTGCAACCCTAAAGCATCAATGTCATGTATCCTAATGAACGGAATGT
193 AGGAAAGAAAAG-GTTTCTTGTGGCCC--AAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * * * * *
1304836 GTTTTTGGACCCCAACCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCATGTCTTATTTAA
255 GTTTTTGGATCCCAATCTTGAAAAAAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAA
* * * *
1304901 GAGATGAACTTTGATCTTAAAGAAAATACGGCAAAGAAAAGATTTTCTTGCACAAGAAAATCATC
320 GAGATGAACTTTGATTTTAAAGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
* * * *
1304966 AATATTATTTATCCTAATGAGGAGAATGTATTTATAGT-ATCTAATCACGAAAA-GAATGAAGAT
385 AATATCATTTATCCTGATAAGGAGAATGTGTTTATAGTGA-CTAATCAC-AAAATGAATGAAGAT
* * * * * ***
1305029 CACTACTCGAATCCATGTTTATCTCGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAAA
448 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGG
* * * * *
1305094 AAAAAGCCTTTCTTGTGAAACCAAAACACCAATATCGGGTATCCTAATGAGAAGTCTATGTTTAT
513 AAAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * *
1305159 GGTGCCTAATCTTGAAAAGATTAGGGAATAGTATGAGTATTTATGTTTGTC-TAATTTAAGAGAT
578 GGTGCCTAATCCTAAAAAGAATAGGGAATAGCATGAGTATTCATGTTTGTCATATTTTAGGAGAC
* * * * *
1305223 AAAC-TTTGATTCAATCAAAAACGGTGGAAAGAAAAGATTTTCTTG-CACACCAAAGCATTAATG
643 AAACATTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATG
* * * * * *
1305286 TCATGTATCCTAATGAAGGGAATGTATTTTAGGTTCCCAATCTTGAAAAGAATGGAAATTGTTTC
708 TCATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTAC
* * * *
1305351 TAGAATCGATACTTATCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAAAG-AA
773 GAGAATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATACGGCAAAGAAA
* * * * **
1305414 AGATTT-TTATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
837 AGATTTACTATGCAAAATAAAATCATCAATATCATTAATCTTAATGAGGAGAACATGTTTATAGT
* * *
1305478 GTCTAATCACAAAATGAGTAAAGATCATTACTAGAATGCATGTTTATCTC
902 GCCTAATCACAAAATGAGTGAAGATCATTACTAGAATCCATGTTTATCTC
* * *
1305528 ATTTGAGGCACGAATTTAGATTTTACAAAAGTTGGTGGGAAAAAAAACCTTTCTTGCGAAACCAA
1 ATTTGAGGCACGAATTTAGATTGTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGCGAAACCAA
* * * *
1305593 AGAACC---A---A-TATC--ATG-TAAGACTATGTTTATAGTGCCTAATCTTGAAAAA-AATGG
65 AGCACCAATATCGAGTATCTTATGAGAAGACTATGTTTATGGTGCCTAATCTT-AAAAAGAATGA
* * * * ** *
1305647 GGAATAGTA-GAGTATTAATGTTTGTCTTATGTAAGAGACAAACTTTGATTC-AACGAACGACGG
129 GGAATAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATC-AAAAATGG
* *
1305710 TGGAAAGAAAA-G---C---T----------TCAATGCCATGTATCCTAATGAAGGGAATGTGTT
193 AGGAAAGAAAAGGTTTCTTGTGGCCCAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * * * *
1305758 TTTGGATCCCTATCTTGAAAAGATTGGAGATTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGG
258 TTTGGATCCCAATCTTGAAAAAAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGAG
* * *
1305823 ATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAGTTTTTTATGCAAAAGAAAATCATCAAT
323 ATGAACTTTGATTTTAAAGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * *
1305888 ATCATTAAT-CTTAGTGAGGAGAATGTGTTTATAGTG-CATAATCACAAAATGAATGAAGATCAT
388 ATCATTTATCCTGA-TAAGGAGAATGTGTTTATAGTGAC-TAATCACAAAATGAATGAAGATCAT
* * * * *
1305951 TACTAGAATCTATATTTGTCCCATTTGTGGCACGAACATAGACTTTACAAAAATTGGTAGGGAAA
451 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGGAAA
* ** *** *
1306016 AAGCTTTTCTTGCAAAATAAAAGCGTTAATATCGTGTATCCTAATGAGAAGACTTTGTTTATGGC
516 AAGCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG-
* * * *
1306081 T-CCTAATCCTTAAAAA-AATGGGGATTAGCATGAGTATTCATGTTTCTCATATTTCA-GAGAC-
580 TGCCTAATCC-TAAAAAGAATAGGGAATAGCATGAGTATTCATGTTTGTCATATTTTAGGAGACA
* * * **
1306142 AACATT-GATTTTTTTAAAAACGGTGGAAAGAAAAGC-TTT-TTACGACACCAAAGCATCAATGT
644 AACATTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
* ** *
1306204 CATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATATTGAAAAGAACGGAGATTGTTATG
709 CATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACG
* *
1306269 AGAATTGATACTTGTCTTGTTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAG
774 AGAATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAG
* * * * *
1306334 ATTTCCT-TGC-AAATAAAATCATTAATGTCATTAATCTTAAAGAGGAGTACATGTTTATAGTGC
839 ATTTACTATGCAAAATAAAATCATCAATATCATTAATCTTAATGAGGAGAACATGTTTATAGTGC
* *
1306397 CTAATCACAAAATCAATGAAGATCATTACTAGAATCCATGTTTATCTC
904 CTAATCACAAAATGAGTGAAGATCATTACTAGAATCCATGTTTATCTC
* *
1306445 ATTTGAGGCATGAATTTAGATTGTACAAAAA-TGGTGGGAAAAAAAGCCTTTCTTGTGAAACCAA
1 ATTTGAGGCACGAATTTAGATTGTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGCGAAACCAA
* * *
1306509 AGCACCAATATCGAGTATCTTAATGAGAAGACTATGTTTAGGGTG-CTAATCTTGAGAAGAATGA
65 AGCACCAATATCGAGTATCTT-ATGAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGA
1306573 GGAATAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGA
129 GGAATAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGA
* * *
1306638 GGAAAGGAAAGGTTTCTTGTGGCACGAAACATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
194 GGAAAGAAAAGGTTTCTTGTGGC-CCAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
*
1306703 TTTGGATTCCAATCTTGAAAAAAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGAG
258 TTTGGATCCCAATCTTGAAAAAAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGAG
1306768 ATGAACTTTGATTTTAAAGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAAAT-AGTCAA
323 ATGAACTTTGATTTTAAAGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA-TCAA
* *
1306832 TATCATTTATCTTGATAAGGAGAATGTGTTTATAGTGACTAATCACAAAATCAATGAAGATCATT
387 TATCATTTATCCTGATAAGGAGAATGTGTTTATAGTGACTAATCACAAAATGAATGAAGATCATT
* *
1306897 ACTAGAATCCATGTTTGTCTCATTTGTGGCACGAACATAAACTTTACAAAAATTGGTGGGGAAAA
452 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGGAAAA
* * *
1306962 AGCTTTTCTTGCGAAA-CAAATGCATCAATATCGTGTATCCTAATGAGAAGGCTTTGTTTATGGT
517 AGCTTTTCTTGCGAAACCAAA-GCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* * * *
1307026 GCCTAATCCTAAAAAGAATGGGGATTAGCATGAGCATTCCTGTTTGTCATATTTTAGGA-ACAAA
581 GCCTAATCCTAAAAAGAATAGGGAATAGCATGAGTATTCATGTTTGTCATATTTTAGGAGACAAA
* * *
1307090 C-TTCGATTTTATAAAAAACGGTGGAAA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGCCA
646 CATTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCA
* *
1307153 TGTATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTGGAAAAGAATAGAGATTGTTACGAG
711 TGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAG
* * * * * *
1307218 AATCAATACTTGTCTTGTTTAAGGGATGAACTTTGATTTGAAAGAGAATACGACATAGAAAAGAT
776 AATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAGAT
* *
1307283 TT-CTATGCAAAATAAAATCATCAATATCATTAATCTTAATGAAGAGTACATGTTTATAGTGCCT
841 TTACTATGCAAAATAAAATCATCAATATCATTAATCTTAATGAGGAGAACATGTTTATAGTGCCT
*
1307347 AATCACAAAATTAGTGAAGATCATTACTAGAATCCATGTTTATCTC
906 AATCACAAAATGAGTGAAGATCATTACTAGAATCCATGTTTATCTC
* * * *
1307393 ATTTGAGGCAAGAATTTAGATTGTACAAAAAATAGTGGGAAAAAAGCCTTTCTTGGGAAACCAAA
1 ATTTGAGGCACGAATTTAGATTGTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA
1307458 GCACCAATATCGAGTATCTTAATGAGAAGACTATGTTTATGGTG-CTAATCTTAAAAAGAATGAG
66 GCACCAATATCGAGTATCTT-ATGAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGAG
1307522 GAATAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGAG
130 GAATAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGAG
*
1307587 GAAAGAAAAGGTTTCTTGTGGCACCAAGCATCAATGTCATGTATCCTCATGAAGGGAATGTGTTT
195 GAAAGAAAAGGTTTCTTGTGGC-CCAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * *
1307652 TTGGATTCCAATCTTGAAAAAAATGGAGATTGTTGTGAGAATCGATGCTTTTCTTATTTAAGAGA
259 TTGGATCCCAATCTTGAAAAAAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGAGA
* * *
1307717 TGAACTTTGACTTTAAAGAAAATACAACAAAGAAAAGATTTCCATGCAAAAGAAAATTC-TCAAT
324 TGAACTTTGATTTTAAAGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAAA-TCATCAAT
*
1307781 ATCATTTATCCTGATAAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTA
388 ATCATTTATCCTGATAAGGAGAATGTGTTTATAGTGACTAATCACAAAATGAATGAAGATCATTA
* * ** * *
1307846 CTAGAATCCACGTTTGTCTCATTTGAGGCACAAATTTAGACCTTACAAAAATTGGGGGGGAAAAA
453 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGGAAAAA
* * * *
1307911 GCTTTTCTTGTGAAACCAAAGCACCAATATCGTGTATCCTATTCAGAAAACTATGTTTATGGTGC
518 GCTTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * * * * * *
1307976 CTAATCTTGAAAAGAATAGGGAATAGTATGGGTATTCATGCTTGTCTTATATGA-GAGAAAAACT
583 CTAATCCTAAAAAGAATAGGGAATAGCATGAGTATTCATGTTTGTCATATTTTAGGAGACAAACA
1308040 TTC-ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
648 TTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
* ** * *
1308104 TATCCTAATGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCGGGAA
713 TATCCTAATGAAGGGAATGCATTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAA
* * * * **
1308169 TTGATGCTTTTCTTATTTAAGGGATGAACTTTGATTTTAAAGAATATTGGGCAAAGAAAAGATTT
778 TCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAGATTT
* * * * ** *
1308234 AC-ATACAAAAGAAAATCATCAATATCTTTATTC-TAATGAGGAGAATGTGTTTACAGTGCCTAA
843 ACTATGCAAAATAAAATCATCAATATCATTAATCTTAATGAGGAGAACATGTTTATAGTGCCTAA
* * * * * * **
1308297 TTATAAAATGATTGAAAATCATTATTAGAATCCATGTTTGTGAC
908 TCACAAAATGAGTGAAGATCATTACTAGAATCCATGTTTATCTC
* * ***
1308341 ATTTGAGGCACGGACTTAGACCATACAAAAATTGGT-GGAAAAAAGCCTTTCTT
1 ATTTGAGGCACGAATTTAGATTGTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
1308394 ACTGCACTAA
Statistics
Matches: 2505, Mismatches: 290, Indels: 144
0.85 0.10 0.05
Matches are distributed among these distances:
916 38 0.02
917 242 0.10
918 50 0.02
919 340 0.14
920 11 0.00
922 1 0.00
923 4 0.00
925 3 0.00
926 24 0.01
927 69 0.03
928 3 0.00
931 1 0.00
934 2 0.00
937 1 0.00
938 8 0.00
939 77 0.03
940 7 0.00
942 1 0.00
943 3 0.00
944 11 0.00
945 374 0.15
946 34 0.01
947 165 0.07
948 787 0.31
949 223 0.09
950 26 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (951 bp):
ATTTGAGGCACGAATTTAGATTGTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA
GCACCAATATCGAGTATCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGAGG
AATAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGAGG
AAAGAAAAGGTTTCTTGTGGCCCAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
GGATCCCAATCTTGAAAAAAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGAGATG
AACTTTGATTTTAAAGAAAATACAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
ATTTATCCTGATAAGGAGAATGTGTTTATAGTGACTAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGGAAAAAGCT
TTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
ATCCTAAAAAGAATAGGGAATAGCATGAGTATTCATGTTTGTCATATTTTAGGAGACAAACATTC
GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGGGAATGCATTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAATCG
ATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAGATTTACT
ATGCAAAATAAAATCATCAATATCATTAATCTTAATGAGGAGAACATGTTTATAGTGCCTAATCA
CAAAATGAGTGAAGATCATTACTAGAATCCATGTTTATCTC
Found at i:1307812 original size:473 final size:473
Alignment explanation
Indices: 1305718--1308393 Score: 3286
Period size: 473 Copynumber: 5.7 Consensus size: 473
1305708 GGTGGAAAGA
* * * *
1305718 AAAGCTTCAATGCCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCTATCTTGAAAAGATT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
*
1305783 GGAGATTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
66 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
* ** * * *
1305848 CGGCAAAGAAAAGTTTTTTATGCAAAAGAAAATCATCAATATCATTAATCTTAGTGAGGAGAATG
131 CGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAATG
* * * *
1305913 TGTTTATAGTGCATAATCACAAAATGAATGAAGATCATTACTAGAATCTATATTTGTCCCATTTG
196 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * ** **
1305978 TGGCACGAACATAGACTTTACAAAAATTGGTAGGG-AAAAAGCTTTTCTTGCAAAATAAAAGCGT
261 AGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * * * *
1306042 TAATATCGTGTATCCTAATGAGAAGACTTTGTTTATGGCTCCTAATCCTTAAAAA-AATGGGGAT
325 CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG-TGCTAAT-CTTAAAAAGAATGAGGAA
* * * * * * * * *
1306106 TAGCATGAGTATTCATGTTTCTCATATTTCAGAGAC-AACATTGATTTTTTTAAAAACGGTGGAA
388 TAGTATGAGTATT-ATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* **
1306170 AGAAAAGCTTT-TTACGACACC
452 AGAAAAGGTTTCTTGTGACACC
** * *
1306191 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATATTGAAAAGAAC
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
** * * *
1306256 GGAGATTGTTATGAGAATTGATACTTGTCTTGTTTAAGGGATGAACTTTGATTTTAAAGAAAATA
66 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
* * * * * * *
1306321 CGGCAAAGAAAAGATTTCCTTGC-AAATAAAATCATTAATGTCATTAATCTTAA-AGAGGAGTAC
131 CGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAATA-AGGAGAAT
* * *
1306384 ATGTTTATAGTGCCTAATCACAAAATCAATGAAGATCATTACTAGAATCCATGTTTATCTCATTT
195 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
1306449 GAGGCATGAATTTAGA-TTGTACAAAAA-TGGTGGGAAAAAAAGCCTTTCTTGTGAAACCAAAGC
260 GAGGCACGAACTTAGACTT-TACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * * *
1306512 ACCAATATCGAGTATCTTAATGAGAAGACTATGTTTAGGGTGCTAATCTTGAGAAGAATGAGGAA
323 ACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCTAATCTTAAAAAGAATGAGGAA
* * *
1306577 TAGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGAGGAA
388 TAGTATGAGTATTA-TGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * *
1306642 AGGAAAGGTTTCTTGTGGCACG
452 AGAAAAGGTTTCTTGTGACACC
* *
1306664 AAA-CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATTCCAATCTTGAAAAAAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
*
1306728 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAAGAAAATA
66 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
* * * * *
1306793 CAGCAAAGAAAAGATTTTCATGCAAAAGAAAAT-AGTCAATATCATTTATCTTGATAAGGAGAAT
131 CGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTAATCCTAATAAGGAGAAT
* *
1306857 GTGTTTATAGTGACTAATCACAAAATCAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
195 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
1306922 GTGGCACGAACATAAACTTTACAAAAATTGGTGGGGAAAAAGCTTTTCTTGCGAAA-CAAATGCA
260 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA-GCA
* * * * * *
1306986 TCAATATCGTGTATCCTAATGAGAAGGCTTTGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
324 CCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCTTAAAAAGAATGAGGAA
* * * * * * * * *
1307051 TAGCATGAGCATTCCTGTTTGTCATATTT-TAGGAACAAACTTCGATTTTATAAAAAACGGTGGA
388 TAGTATGAGTATT-ATGTTTGTCTTATTTAAAAG-ACAAACTTTGATTCTATCAAAAACGGTGGA
*
1307115 AA-AAAAGCTTTTCTTGTGACACC
451 AAGAAAAG-GTTTCTTGTGACACC
* * *
1307138 AAAGCATCAATGCCATGTATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTGGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
* * * * * * *
1307203 AGAGATTGTTACGAGAATCAATACTTGTCTTGTTTAAGGGATGAACTTTGATTTGAAAGAGAATA
66 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
* * * * * * *
1307268 CGACATAGAAAAGATTTCTATGCAAAATAAAATCATCAATATCATTAATCTTAATGAA-GAGTAC
131 CGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAAT-AAGGAGAAT
* * * *
1307332 ATGTTTATAGTGCCTAATCACAAAATTAGTGAAGATCATTACTAGAATCCATGTTTATCTCATTT
195 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
1307397 GAGGCAAGAATTTAGA-TTGTACAAAAAATAGTGGGAAAAAAGCCTTTCTTGGGAAACCAAAGCA
260 GAGGCACGAACTTAGACTT-TACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCA
* *
1307461 CCAATATCGAGTATCTTAATGAGAAGACTATGTTTATGGTGCTAATCTTAAAAAGAATGAGGAAT
324 CCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCTAATCTTAAAAAGAATGAGGAAT
* * *
1307526 AGTATGAGTATTATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGAGGAAA
389 AGTATGAGTATTA-TGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
*
1307591 GAAAAGGTTTCTTGTGGCACC
453 GAAAAGGTTTCTTGTGACACC
* * *
1307612 -AAGCATCAATGTCATGTATCCTCATGAAGGGAATGTGTTTTTGGATTCCAATCTTGAAAAAAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
* * * *
1307676 GGAGATTGTTGTGAGAATCGATGCTTTTCTTATTTAAGAGATGAACTTTGACTTTAAAGAAAATA
66 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
** * *
1307741 CAACAAAGAAAAGATTTCCATGCAAAAGAAAATTC-TCAATATCATTTATCCTGATAAGGAGAAT
131 CGGCAAAGAAAAGATTTCCATGCAAAAGAAAA-TCATCAATATCATTAATCCTAATAAGGAGAAT
* *
1307805 GTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTT
195 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * * * *
1307870 GAGGCACAAATTTAGACCTTACAAAAATTGGGGGGGAAAAAGCTTTTCTTGTGAAACCAAAGCAC
260 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * * *
1307935 CAATATCGTGTATCCTATTCAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-AGGGAA
325 CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCTTAAAAAGAATGA-GGAA
* * * * * * *
1307999 TAGTATGGGTATTCATGCTTGTCTTATATGAGAGAAAAACTTTCATTCTATCAAAAACGGTGGAA
388 TAGTATGAGTATT-ATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAA
*
1308064 AGAAAAGCTTTTCTTGTGACACC
452 AGAAAAG-GTTTCTTGTGACACC
*
1308087 AAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
* * * * * *
1308152 AGAGATTGTTGCGGGAATTGATGCTTTTCTTATTTAAGGGATGAACTTTGATTTTAAAGAATATT
66 GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
* * * * * *
1308217 GGGCAAAGAAAAGATTTACATACAAAAGAAAATCATCAATATC-TTTATTCTAATGAGGAGAATG
131 CGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAATG
* * * * * * **
1308281 TGTTTACAGTGCCTAATTATAAAATGATTGAAAATCATTATTAGAATCCATGTTTGTGACATTTG
196 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* **
1308346 AGGCACGGACTTAGACCATACAAAAATTGGT-GGAAAAAAGCCTTTCTT
261 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
1308394 ACTGCACTAA
Statistics
Matches: 1881, Mismatches: 287, Indels: 69
0.84 0.13 0.03
Matches are distributed among these distances:
470 10 0.01
471 48 0.03
472 336 0.18
473 626 0.33
474 276 0.15
475 426 0.23
476 159 0.08
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (473 bp):
AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
GGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
CGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCTAATCTTAAAAAGAATGAGGAATAG
TATGAGTATTATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
AAGGTTTCTTGTGACACC
Found at i:1308697 original size:314 final size:315
Alignment explanation
Indices: 1308051--1308720 Score: 866
Period size: 314 Copynumber: 2.1 Consensus size: 315
1308041 TCATTCTATC
* * * * *
1308051 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA
1 AAAAATGGTGGGAA-AAAAGCCTTTCTTCTGACACCAAAGAATCAATGTCATGTATCCTAATGAA
* * *
1308116 GGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCGGGAATTGATGCTTTTC
65 GGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCGAGAATCGATGCTTCTC
* * *
1308181 TTATTTAAGGGATGAACTTTGATTTTAAAGAATATTGGGCAAAGAAAAGATTTACATACAAAAGA
130 TTATTTAAGGGATCAACTTTGATTTTAAAGAAAATTGGACAAAGAAAAGATTTACATACAAAAGA
* * * * * * * *
1308246 AAATCATCAATATCTTTATTCTAATGAGGAGAATGTGTTTACAGTGCCTAATTATAAAATGATTG
195 AAATCATCAATATCATTAATCTAAT-AGGAGAACGTGGTTACAGTGCCTAATCACAAAATCAATG
* * * *
1308311 AAAATCATTATTAGAATCCATGTTTGTGACATTTGAGGCACGGACTTAGACCATACA
259 AAAATCATTATTAGAATCCATGTTTATCACAATTGAGGCACGAACTTAGACCATACA
* *
1308368 AAAATTGGT-GGAAAAAAGCCTTTCTTACTG-CACTAAAGAATCAATGTCATGTATCCTAATGAA
1 AAAAATGGTGGGAAAAAAGCCTTTCTT-CTGACACCAAAGAATCAATGTCATGTATCCTAATGAA
* * *
1308431 GGAAATGTG-TTTTGGATCCCAATCTTGAAAAGACTGGTGATTGTTGCGAGAATCGATGCTTCTC
65 GGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCGAGAATCGATGCTTCTC
* * *
1308495 TTATTTAAGGGATCAACTTTGATTTTAAAGAAAATAT-GACAAAGAAACGATTTGCATGCAAAAG
130 TTATTTAAGGGATCAACTTTGATTTTAAAGAAAAT-TGGACAAAGAAAAGATTTACATACAAAAG
* *
1308559 AAAATCATCAATATCATTAATCTTAAT-GGAGTACGTGGTTATAGTGCCTAATCACAAAATCAAT
194 AAAATCATCAATATCATTAATC-TAATAGGAGAACGTGGTTACAGTGCCTAATCACAAAATCAAT
* * * ***
1308623 GAAGATCATT-TCTAGAATCCATGTTTATCTCAATTGAGGCACGAATTTAGATTGTACA
258 GAAAATCATTAT-TAGAATCCATGTTTATCACAATTGAGGCACGAACTTAGACCATACA
* *
1308681 AAAAATGGTGGGAAAAAAAGCCTTTCTTGTGAAACCAAAG
1 AAAAATGGTGGG-AAAAAAGCCTTTCTTCTGACACCAAAG
1308721 CACCAATATT
Statistics
Matches: 303, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
312 1 0.00
313 83 0.27
314 129 0.43
315 78 0.26
316 5 0.02
317 7 0.02
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (315 bp):
AAAAATGGTGGGAAAAAAGCCTTTCTTCTGACACCAAAGAATCAATGTCATGTATCCTAATGAAG
GAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCGAGAATCGATGCTTCTCT
TATTTAAGGGATCAACTTTGATTTTAAAGAAAATTGGACAAAGAAAAGATTTACATACAAAAGAA
AATCATCAATATCATTAATCTAATAGGAGAACGTGGTTACAGTGCCTAATCACAAAATCAATGAA
AATCATTATTAGAATCCATGTTTATCACAATTGAGGCACGAACTTAGACCATACA
Found at i:1309545 original size:476 final size:474
Alignment explanation
Indices: 1308402--1312509 Score: 4919
Period size: 476 Copynumber: 8.7 Consensus size: 474
1308392 TTACTGCACT
* *
1308402 AAAGAATCAATGTCATGTATCCTAATGAA-GGAA-ATGTGTTTTGGATCCCAATCTTGAAAAGAC
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT-TTTTGGATCCCAATCTTGAAAAGAA
* * * *
1308465 TGGTGATTGTTGCGAGAATCGATGCTTCTCTTATTTAAGGGATCAACTTTGATTTTAAAGAAAAT
65 TGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAAT
* * * * *
1308530 ATGACAAAGAAACGATTTGCATGCAAAAGAAAATCATCAATATCATTAATCTTAAT--GGAGTAC
130 ATGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
* * * * *
1308593 GTGGTTATAGTGCCTAATCACAAAATCAATGAAGATCATTTCTAGAATCCATGTTTATCTCAATT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
1308658 GAGGCACGAATTTAGA-TTGTACAAAAAATGGTGGGAAAAAAAGCCTTTCTTGTGAAACCAAAGC
259 GAGGCACGAACTTAGACTT-TACAAAAATTGGTGGG-GAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * * * *
1308722 ACCAATATTGA-GTATCTTAATGAGAAGACTATGTTTATGGTGCTAATCTTGAAAAGAATGAGGA
322 ACCAATA-TCATGTATCCTATTCAGAAGACTATGTTTATGGTCCTAATCTTGAAAAGAATGGGGA
* * * ** *
1308786 ATAGTATGAGTATT-ATTGTTTGTCTTATTTAGGAAACAAACTTTGATTTAATCAAAAACGA-AG
386 ATAGTATGAGTATTCA-TGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGG
* * *
1308849 AAAAAAAAGCTTTTCTTACGGCACC
450 AAAGAAAAGCTTTTCTTGCGACACC
* * *
1308874 AAAGCATTAATGTCATATATCGTAATGAAGGGAATATG-TTTTGGATCCCAATCTTGAAGAA-AA
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAA-AAGAA
* * * *
1308937 TGGAGATTGTTGCGAGAATCGATGCTTGGCTTATTTAAGGGAGGAACTTTGATTTTAAACAAAAT
65 TGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAAT
** * * *
1309002 ACAGCAAAGAAAAAATTTGCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAT
130 ATGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
*
1309067 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
1309132 AAAGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTACGAAACCAAAGCAC
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * * *
1309197 CAATATCATGTATCCTATTTAGAAGAGTATGTTTATGGTACCTAATCTTGAATAGAGTGGGGAAT
324 CAATATCATGTATCCTATTCAGAAGACTATGTTTATGGT-CCTAATCTTGAAAAGAATGGGGAAT
* * * *
1309262 AGTATGAGTATTCATGTTTGTGTTATTTGAGAGACAAACTTTCATTCCATCAAGAACGGTGGAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGGAAA
* * *
1309327 GAAAAGCTTTTTTTACGATACC
453 GAAAAGCTTTTCTTGCGACACC
*
1309349 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCCTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAAT
* ** * *
1309414 GCAGATTGTTGTGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
66 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
* ** *
1309479 TGGCAAAGACAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTGTCCTAATAAGGGGAATG
131 TGGCAAAGAAAAGATTTC-ATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAATG
* *
1309544 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATACATGTTTGTCTCATTTG
195 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *** * * *
1309609 AAGCGTTAGCTTAGATTTTAC-GAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACC
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* *
1309673 AATATCGTGTACCCTATTCAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATA
325 AATATCATGTATCCTATTCAGAAGACTATGTTTATGGT-CCTAATCTTGAAAAGAATGGGGAATA
* * * ** * *
1309738 GTATGAGTATTCATTTTTGTCTTATTTGAGAGGCAAACTTTCATTCTGTCAAAAATGGTGGAAAG
389 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGGAAAG
1309803 AAAAGCTTTTCTTGCGACACC
454 AAAAGCTTTTCTTGCGACACC
* * * * *
1309824 AAAGCTTCAA--T-A--TATCCTAATGATGGGAATATGTTTTTAGACCCCAATCTTGAAAAGATT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAAT
* * * * *
1309884 GGAGATTGTTACGAGAATCGATGTTTGTCTTATTTATGGGATTAACTTCGATTTTAAAGATTAA-
66 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGA-AAAT
* * * * * * *
1309948 AGGGTAAAGGAAAGATTTTCATGCAAAAGAAATTCATCAATATCAATAATCTTAATGAGGAGAAT
130 ATGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
* * ** * * * *
1310013 ATGTTTATAGTGCCCAATCTTAAAATGAATGAAGATCAATAGTAGAATCCATGTTTGTTTCCTTT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * **
1310078 GAGGCAGGAACTAAGACTTTGA-AAAAATTGG-GGGGAAAAAAGCCTTTCTTGTAAAACCAAAGC
259 GAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGG-AAAAAGCCTTTCTTGCGAAACCAAAGC
* * **** * * * *
1310141 TCCAATATCAGGTATCCTAAAGTGAAGACTATGTTTATAGTGCTAATCTTAAAAATAATGGGGAA
322 ACCAATATCATGTATCCTATTCAGAAGACTATGTTTATGGTCCTAATCTTGAAAAGAATGGGGAA
* * * * * ** *
1310206 TGGTATGAGTATT-ATTGTTTGTCTTTATTTAAGAGATAAACTTTGATTCGATAAAAAAAAAAGG
387 TAGTATGAGTATTCA-TGTTTGTC-TTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGG
*
1310270 AAAGAAAAGCTTTTCTTGCGACATC
450 AAAGAAAAGCTTTTCTTGCGACACC
* * *
1310295 AAAGCATCAATGTCATGTATCTTAATGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAAT
* * *
1310360 GGAGATTGTCATA-G-GAGTCGATACTTGTCTTATTTAAGGGATGGACTTTGATTTTAAAGAAAA
66 GGAGATTGT--TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAA
* *** * * * * * *
1310423 TACGATGAAGAAAAGATTTTCTTGTAAAAGAAAATCATCAATTTCATTAATCTTAATGAGGAGTA
129 TATGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAA
* * * * * *
1310488 TATGTTTATAGTCCCTAATCGCAAAATGAATGAAGATCATTACCAGAACCCATGTTTGTCACATT
193 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * *
1310553 TAAGGCCCGAATTTAGATTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTACGAAACCAAAGC
258 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-GAAAAAGCCTTTCTTGCGAAACCAAAGC
* * *
1310618 ACCAATATCATGTACCCTATTCAGAAGACTGTGTTTATGGTACCTAATCTTGAAAATAATGGGGA
322 ACCAATATCATGTATCCTATTCAGAAGACTATGTTTATGGT-CCTAATCTTGAAAAGAATGGGGA
* *
1310683 ATAGTATGAGTATTCTTGTTTGTCTTATTTGAGAGACAAACTTTCATTCCATCAAAAACGATGGA
386 ATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGGA
1310748 AAGAAAAGCTTTTCTTGCGACACC
451 AAGAAAAGCTTTTCTTGCGACACC
* * *
1310772 AAGGCATCAATGTCATGTATCTTAATGAAGGGAATTTG-TTTTGGATCCCAATCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAAT
*
1310836 GGAGATTGTCACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATAA-AAAAT
66 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAGAAAAT
* * *
1310900 ATGGCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGCGAAT
130 ATGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
*
1310965 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
1311030 GAGGCATGAACTTAAACTTTACAAAAATTGGAGGGGAAAAAGCCTTTCTTGCGAAAGCAAAGCAC
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCAC
* *
1311095 CACTATTATGTATCCTATTCAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAAT
324 CAATATCATGTATCCTATTCAGAAGACTATGTTTATGGT-CCTAATCTTGAAAAGAATGGGGAAT
* * *
1311159 AGTATGAGAATTCATGTTTGTCTTATTTATGAGACAAACTTTCAATCCATCAAAAACGATGGAAA
388 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGGAAA
* *
1311224 GAAAAGCTTTTTTTGCGATACC
453 GAAAAGCTTTTCTTGCGACACC
* * * * *
1311246 AAAGCTTCAATGTCACGTATCCTAATGAAGGGAATGTATTTTTGGATCCCAATCTTGAAAAGATT
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAAT
* * * *
1311311 AGAGATTGTTAC-AGGAATCGATGCTTATTTTATTTATGGGATGAACTTTGATTTTAAAGAATAA
66 GGAGATTGTTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAA-AA
* * * * * * **
1311375 -AGGGTAAAGAAAAGATTTCCACGAAAAAGAAATTCATCAATATCATTAATCTTAACGAGGAGAA
129 TATGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAA
* ** * * * * *
1311439 TATGTTTATAGTGCCTAATCTTAAAATAAATGAAGATGAATAGTAAAATCCATGTTTGTCTCATT
193 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * ** * *
1311504 TGAGGTAGGAACTAAGACTTTA-AAAAATTTGGTGGAAAAAAAAGCCTTTCCTGTGAAACCAAAG
258 TGAGGCACGAACTTAGACTTTACAAAAA-TTGGTGG-GGAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
1311568 CACCAATAT-AGGGTATCCAAATGAGAAGACTATGTTTATGGTGCTAATCTTGAAAAGAATGGAG
321 CACCAATATCA-TGTATCCTATTCAGAAGACTATGTTTATGGTCCTAATCTTGAAAAGAATGGGG
* ** ** * * *
1311632 AATAGTATAAGTATTGTTGTTTGTCTTTATTTAAGAGGTAAACTTTGATTCTATCAAAAACAATG
385 AATAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATG
1311697 GAAAGAAAAGCTTTTCTTGCGACACC
449 GAAAGAAAAGCTTTTCTTGCGACACC
* * * *
1311723 AAAGCATCAATGTTAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAC
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAA-
* * *
1311788 T-AAGATTGTTACGAGAATCGCTGCTTGTCTTATTTAAGGGATGAACATTGATTTT----AAAAT
65 TGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAAT
* * * * * * * *
1311848 AAGGCAAAGAATAGATTTCATTGGAAAAGAAAATCTTCAATATTATTTATCGTAATGAGGAGAAT
130 ATGGCAAAGAAAAGATTTCA-TGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAAT
* *
1311913 GTGTTTATAGTGCTTAATCACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
1311978 GAGGCACGCACTTAGACTTTATAAAAATTGGTAGGCAAAAAGCCTTTCTTGCGAAACCAAAGCAC
259 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCAC
* * * * * * *
1312043 TC-ATATCGTGTATCCTATTCAGAAAACCATATTTATGGTGCCTAATCCTAAAAAGAAAGGGG-A
324 -CAATATCATGTATCCTATTCAGAAGACTATGTTTATGGT-CCTAATCTTGAAAAGAATGGGGAA
* * * * * *
1312106 TCAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGTA
387 T-AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGGA
* *
1312171 AAAAAAAGCTTTTGTTGCGACACC
451 AAGAAAAGCTTTTCTTGCGACACC
* * * *
1312195 AAAGCATCAATGTCAAGTATCCTAATAAAGGGACTGTGTTTTTGGATCCCAATCTTG-AAAGTAA
1 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAG-AA
* * * * * * * *
1312259 TTGAGATTTGTTTCAAGAGTTGATACTTATCTTATTTAAGGGATGGACTTTGATTTTAAAGAAAA
65 TGGAGA-TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAA
* * * *
1312324 AATGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATACCACTAATCCTCATAAGGAGAA
129 TATGGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAA
* * *
1312389 TGTGTTTTTAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATT
193 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
1312454 TGA-G-ACGGAACTTAGACTTTACAAAAATTGGTGGTGAAAATGCTTTTCTTGTGAAA
258 TGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAA
1312510 TGATAGCATC
Statistics
Matches: 3115, Mismatches: 457, Indels: 124
0.84 0.12 0.03
Matches are distributed among these distances:
469 1 0.00
470 257 0.08
471 138 0.04
472 332 0.11
473 276 0.09
474 297 0.10
475 562 0.18
476 774 0.25
477 427 0.14
478 51 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCTTGAAAAGAAT
GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATA
TGGCAAAGAAAAGATTTCATGCAAAAGAAAATCATCAATATCATTAATCCTAATAAGGAGAATGT
GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCA
ATATCATGTATCCTATTCAGAAGACTATGTTTATGGTCCTAATCTTGAAAAGAATGGGGAATAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCATTCCATCAAAAACGATGGAAAGAA
AAGCTTTTCTTGCGACACC
Found at i:1310883 original size:158 final size:158
Alignment explanation
Indices: 1305731--1312313 Score: 1568
Period size: 159 Copynumber: 41.7 Consensus size: 158
1305721 GCTTCAATGC
* * * * *
1305731 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCTATCTTGAAAAGATTGGAGATTGTTGCA
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * ** *
1305796 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATACG--GCAAAGAAA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCT-ATCAAAA-ACGATGGAAAGAAA
* * ** *
1305859 AG-TTTTTTATGCAAAAGAAAATCATCAATAT
128 AGCTTTTCT-TGCGAAACCAAAGCATCAATAT
* * * ** ** * **
1305890 CAT-TAATCTTAGTG-AGGAGAATGTGTTTATAGTGCATAATC-ACAAAATGAATGAAGATCATT
1 CATGT-ATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTT
* * * ** ** * * * * * **
1305952 ACTAGAATCTATATTTGTCCCATTTGTGGCACGAACATAGACTT-TA-CAAAAA--TTGGTAGGG
62 ACGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTCTATCAAAAACGATGG-AAAG
* ** * *
1306013 AAAAAGCTTTTCTTGCAAAATAAAAGCGTTAATAT
125 -AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * *
1306048 CGTGTATCCTAATG-AGAAGACTTTGTTTATGGCTCCTAATCCTT-AAAAAAATGGGGATTAG-C
1 CATGTATCCTAATGAAG-GGAATGTGTTTATGG-TCCCAAT-CTTGAAAAGAATGGAGATT-GTT
* * * * * * * * * * * *
1306110 ATGAGTATTC-ATGTTTCTCATATTTCAGAGA-CAACATTGATTTTTTTAAAAACGGTGGAAAGA
62 ACGAG-AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* * *
1306173 AAAGC-TTT-TTACGACACCAAAGCATCAATGT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
** * * * *
1306204 CATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATATTGAAAAGAACGGAGATTGTTATG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* ** * * ** *
1306269 AGAATTGATACTTGTCTTGTTTAAGGGATGAACTTTGATTTTAAAGAAAATACG--GCAAAGAAA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCT-ATCAAAA-ACGATGGAAAGAAA
* * ** * * *
1306332 AGATTTCCTTGC-AAATAAAATCATTAATGT
128 AGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * ** * * ** * * **
1306362 CAT-TAATCTTAAAG-AGGAGTACATGTTTATAGTGCCTAATC-ACAAAATCAATGAAGATCATT
1 CATGT-ATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTT
* * * * * * * * *
1306424 ACTAGAATCCATGTTTATCTCATTTGAGGCATGAA-TTTAGATTGTA-CAAAAATGGTGGGAAA-
62 ACGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTT-GATTCTATCAAAAACGAT-GGAAAG
* * *
1306486 AAAAGCCTTTCTTGTGAAACCAAAGCACCAATAT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * * *
1306520 CGA-GTATCTTAATG-AGAAGACTATGTTTAGGGTGCTAATCTTGAGAAGAAT-GAGGAATAG-T
1 C-ATGTATCCTAATGAAG-GGAATGTGTTTATGGTCCCAATCTTGAAAAGAATGGA-G-ATTGTT
* * * ** ** * *
1306581 ATGAGTAT-TATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGA-GGAAAG
62 ACGAGAATCGA-TGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAA-CGATGGAAAG
* * * ** * *
1306644 GAAAG-GTTTCTTGTGGCACGAAA-CATCAATGT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
1306676 CATGTATCCTAATGAAGGGAATGTGTTTTTGGATTCCAATCTTGAAAAAAATGGAGATTGTTGCG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * * ** *
1306741 AGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAAGAAAATAC-A-GCAAAGAAA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCT-ATCAAAA-ACGATGGAAAGAAA
* * ** **
1306804 AGATTTTCATGC-AAAAGAAAATAGTCAATAT
128 AGCTTTTCTTGCGAAACCAAAGCA-TCAATAT
* * * * * * ** * * **
1306835 CATTTATCTTGAT-AAGGAGAATGTGTTTATAGTGACTAATC-ACAAAATCAATGAAGATCATTA
1 CATGTATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* * * ** * * * ** * * **
1306898 CTAGAATCCATGTTTGTCTCATTTGTGGCACGAACATAAACTT-TA-CAAAAATTGGTGGGGA-A
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTCTATCAAAAA-CGATGGAAAGA
1306960 AAAGCTTTTCTTGCGAAA-CAAATGCATCAATAT
126 AAAGCTTTTCTTGCGAAACCAAA-GCATCAATAT
* * * * * * * * *
1306993 CGTGTATCCTAATGAGAAGG-CTTTGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG-CA
1 CATGTATCCTAATGA-AGGGAATGTGTTTATGGT-CCCAATCTTGAAAAGAATGGAGATT-GTTA
* * * * * * ** * * * *
1307056 TGAGCATTC-CTGTTTGTCATATTTTAGGAACAAACTTCGATTTTATAAAAAACGGTGGAAA-AA
63 CGAG-AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGAA
* * **
1307119 AAGCTTTTCTTGTGACACCAAAGCATCAATGC
127 AAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
1307151 CATGTATCCTAATGAAGGGAATGCGTTTTTGGATCCCAATCTGGAAAAGAATAGAGATTGTTACG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* ** * * * *
1307216 AGAATCAATACTTGTCTTGTTTAAGGGATGAACTTTGATT-TGA-AAGAGAATACGA--CATAGA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCT-ATCA-A-AA-ACGATGGAAAGA
* * ** *
1307277 AAAG-ATTTCTATGCAAAATAAAATCATCAATAT
126 AAAGCTTTTCT-TGCGAAACCAAAGCATCAATAT
* * * ** * * ** * * * **
1307310 CAT-TAATCTTAATGAAGAGTACATGTTTATAGTGCCTAATC-ACAAAATTAGTGAAGATCATTA
1 CATGT-ATCCTAATGAAGGGAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* * * * * * * * ** *
1307373 CTAGAATCCATGTTTATCTCATTTGAGGCAAGAA-TTTAGATTGTA-CAAAAAATAGTGGGAA-A
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTT-GATTCTATCAAAAACGA-TGGAAAGA
* * *
1307435 AAAGCCTTTCTTGGGAAACCAAAGCACCAATAT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * *
1307468 CGA-GTATCTTAATG-AGAAGACTATGTTTATGGTGCTAATCTTAAAAAGAAT-GAGGAATAG-T
1 C-ATGTATCCTAATGAAG-GGAATGTGTTTATGGTCCCAATCTTGAAAAGAATGGA-G-ATTGTT
* * * ** ** * *
1307529 ATGAGTAT-TATTGTTTGTCTTATTTAAAAGACAAACTTTGATTCGATCAAAAATGGA-GGAAAG
62 ACGAGAATCGA-TGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAA-CGATGGAAAG
* * ** *
1307592 AAAAG-GTTTCTTGTGGCACC-AAGCATCAATGT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * **
1307624 CATGTATCCTCATGAAGGGAATGTGTTTTTGGATTCCAATCTTGAAAAAAATGGAGATTGTTGTG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* ** **
1307689 AGAATCGATGCTTT-TCTTATTTAAGAGATGAACTTTGACTT-TAAAGAAAATAC-A-ACAAAGA
65 AGAATCGATG-TTTGTCTTATTTAAGGGATGAACTTTGA-TTCT-ATCAAAA-ACGATGGAAAGA
* * * * ** *
1307750 AAAGATTTCCATGCAAAAGAAAATTC-TCAATAT
126 AAAGCTTTTCTTGCGAAACCAAA-GCATCAATAT
* * * ** * **
1307783 CATTTATCCTGAT-AAGGAGAATGTGTTTATAGTGT-CTAATC-ACAAAATGAATGAAGATCATT
1 CATGTATCCTAATGAAGG-GAATGTGTTTAT-G-GTCCCAATCTTGAAAA-GAATGGAGATTGTT
* * * * * * * * * * ** **
1307845 ACTAGAATCCACGTTTGTCTCATTTGAGGCA-CAAATTTAGA-CCT-TACAAAAATTGGGGGGGA
62 ACGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTT-GATTCTAT-CAAAAA-CGATGGAAA
* *
1307907 -AAAAGCTTTTCTTGTGAAACCAAAGCACCAATAT
124 GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* ** ** * * *
1307941 CGTGTATCCT-ATTCAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGG-GAATAG-T
1 CATGTATCCTAATGAAGGGAA-TGTGTTTATGGT-CCCAATCTTGAAAAGAAT-GGAG-ATTGTT
* * * * * * * ** * *
1308003 ATGGGTATTC-ATGCTTGTCTTATATGAGAGAAAAACTTTCATTCTATCAAAAACGGTGGAAAGA
62 ACGAG-AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* * *
1308067 AAAGCTTTTCTTGTGACACCAAAGCATCAATGT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
1308100 CATGTATCCTAATGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTGCG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * *
1308165 GGAATTGATGCTTT-TCTTATTTAAGGGATGAACTTTGATT-T-T-AAAGAA-TATTGGGCAAAG
65 AGAATCGATG-TTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAA-AACGA-T-GG-AAAG
* * * * * ** *
1308225 AAAAGATTTACATACAAAAGAAAATCATCAATAT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * ** * * * * **
1308259 C-TTTATTCTAATG-AGGAGAATGTGTTTACAGTGCCTAAT-TAT-AAAATGATTGAAAATCATT
1 CATGTATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCT-TGAAAA-GAATGGAGATTGTT
** * *** * * * * * * * *
1308320 ATTAGAATCCATGTTTGTGACATTTGAGGCACGGACTTAGA--CCATACAAAAATTGGTGG-AA-
62 ACGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTAT-CAAAAA-CGATGGAAAG
* * * * * *
1308381 AAAAGCCTTTCTTACTG-CACTAAAGAATCAATGT
125 AAAAGCTTTTCTTGC-GAAACCAAAGCATCAATAT
* * * *
1308415 CATGTATCCTAATGAAGGAAATGTGTTT-TGGATCCCAATCTTGAAAAGACTGGTGATTGTTGCG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * * * ** *
1308479 AGAATCGATGCTTCTCTTATTTAAGGGATCAACTTTGATT-T-TAAAGAAAATATGACAAAGAAA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAA-AAACGATG-GAAAGAAA
* * * * * ** *
1308542 CGATTTGCATGCAAAAGAAAATCATCAATAT
128 AGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * ** * * ** *
1308573 CAT-TAATCTTAATG--GAGTACGTGGTTATAGTGCCTAATC-ACAAAATCAATGAAGATCATTT
1 CATGT-ATCCTAATGAAGGGAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* * * * * * * * * * *
1308634 CTAGAATCCATGTTTATCTCAATTGAGGCACGAA-TTTAGATTGTA-CAAAAAATGGTGGGAAA-
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTT-GATTCTATC-AAAAACGAT-GGAAAG
* * *
1308696 AAAAGCCTTTCTTGTGAAACCAAAGCACCAATATT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATA-T
* * * * * * * *
1308731 GA-GTATCTTAATG-AGAAGACTATGTTTATGGTGCTAATCTTGAAAAGAAT-GAGGAATAG-TA
1 CATGTATCCTAATGAAG-GGAATGTGTTTATGGTCCCAATCTTGAAAAGAATGGA-G-ATTGTTA
* * * * ** * *
1308792 TGAGTAT-TATTGTTTGTCTTATTT-AGGAAACAAACTTTGATT-TAATCAAAAACGA-AGAAAA
63 CGAGAATCGA-TGTTTGTCTTATTTAAGG-GATGAACTTTGATTCT-ATCAAAAACGATGGAAAG
* ** * *
1308853 AAAAGCTTTTCTTACGGCACCAAAGCATTAATGT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
1308887 CATATATCGTAATGAAGGGAATATGTTT-TGGATCCCAATCTTGAAGAA-AATGGAGATTGTTGC
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAA-AAGAATGGAGATTGTTAC
* * * * * *
1308950 GAGAATCGATGCTTGGCTTATTTAAGGGAGGAACTTTGATTTTAAACAAAATAC-A-GCAAAGAA
64 GAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCT-ATCAAAA-ACGATGGAAAGAA
** * * ** *
1309013 AAAATTTGCTTGCAAAAGAAAATCATCAATAT
127 AAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * ** * **
1309045 CATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTA
1 CATGTATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* ** * * * * * * * **
1309108 CTAGAATCCTTGTTTGTCTCATTTAAAGCACGAACTTAGACTT-TA-CAAAAATTGGTGGGGA-A
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTCTATCAAAAA-CGATGGAAAGA
* * *
1309170 AAAGCCTTTCTTACGAAACCAAAGCACCAATAT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * *
1309203 CATGTATCCTATTTAGAA--GAGTATGTTTATGGTACCTAATCTTGAATAGAGTGGGGAATAG-T
1 CATGTATCCTA-AT-GAAGGGAATGTGTTTATGGT-CCCAATCTTGAAAAGAATGGAG-ATTGTT
* * * * * ** * * * *
1309265 ATGAGTATTC-ATGTTTGTGTTATTTGAGAGACAAACTTTCATTCCATCAAGAACGGTGGAAAGA
62 ACGAG-AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* * * *
1309329 AAAGCTTTTTTTACGATACCAAAGCATCAATGT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * **
1309362 CATGTATCCTAATGAAGGGAATATGTTTTTGGATCCCAATCCTGAAAAGAATGCAGATTGTTGTG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* *** * *
1309427 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TATGGCAAAGACAA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGG-AAAGAAAA
* * * ** *
1309491 G-ATTTCAATGCAAAAGAAAATCATCAATAT
129 GCTTTTC-TTGCGAAACCAAAGCATCAATAT
* * ** * ** * **
1309521 CATTTGTCCTAAT-AAGGGGAATGTGTTTATAATGCCTAATC-ACAAAATGAATGAAGATCATTA
1 CATGTATCCTAATGAA-GGGAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* * * * * * * * ** * **
1309584 CTAGAATAC-ATGTTTGTCTCATTTGAAGCG-TTAGCTTAGATTTTA-CGAAATTGGTGGGGA-A
63 CGAGAAT-CGATGTTTGTCTTATTT-AAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* *
1309645 AAAGCCTTTCTTGCGAAACCAAAGCACCAATAT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * *
1309678 CGTGTACCCTATTCAGAA--GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAG-T
1 CATGTATCCTAAT--GAAGGGAATGTGTTTATGGT-CCCAATCTTGAAAAGAATGGAG-ATTGTT
* * * * * * * *
1309740 ATGAGTATTC-ATTTTTGTCTTATTTGAGAGGCA--AACTTTCATTCTGTCAAAAATGGTGGAAA
62 ACGAG-AATCGATGTTTGTCTTATTT-A-AGGGATGAACTTTGATTCTATCAAAAACGATGGAAA
* *
1309802 GAAAAGCTTTTCTTGCGACACCAAAGCTTC-A-AT
124 GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * ** *
1309835 -A--TATCCTAATGATGGGAATATGTTTTTAGACCCCAATCTTGAAAAGATTGGAGATTGTTACG
1 CATGTATCCTAATGAAGGGAATGTGTTTAT-GGTCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * * * * *
1309897 AGAATCGATGTTTGTCTTATTTATGGGATTAACTTCGATT-T-T-AAAGATTA-AAGGGTAAAGG
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAA-A--ACGATGG-AAAGA
* * ** *
1309958 AAAGATTTTCATGC-AAAAGAAATTCATCAATAT
126 AAAGCTTTTCTTGCGAAACCAAA-GCATCAATAT
* * * * * ***
1309991 CAAT-AATCTTAATG-AGGAGAATATGTTTATAGTGCCCAATCTT-AAAATGAATGAAGATCAAT
1 C-ATGTATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTT
* * * * * ** * ** *
1310053 A-GTAGAATCCATGTTTGT-TTCCTTTGAGGCAGGAACTAAGACTT-TGA--AAAAATTGGGGGG
62 ACG-AGAATCGATGTTTGTCTT-ATTTAAGGGATGAACTTTGA-TTCT-ATCAAAAA-CGATGGA
* **
1310113 AA-AAAAGCCTTTCTTGTAAAACCAAAGC-TCCAATAT
122 AAGAAAAGCTTTTCTTGCGAAACCAAAGCAT-CAATAT
* * * * * * * * * * * *
1310149 CAGGTATCCTAAAGTGAA--GACTATGTTTATAGTGCTAATCTTAAAAATAATGGGGAATGGTAT
1 CATGTATCCT-AA-TGAAGGGAATGTGTTTATGGTCCCAATCTTGAAAAGAATGGAGATTGTTAC
* * * * * * ** *
1310212 GAGTAT-TATTGTTTGTCTTTATTTAAGAGATAAACTTTGATTCGATAAAAAAAAAAGGAAAGAA
64 GAGAATCGA-TGTTTGTC-TTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGAA
* * *
1310276 AAGCTTTTCTTGCGACATCAAAGCATCAATGT
127 AAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * *
1310308 CATGTATCTTAATGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTCATA
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGT--TA
* ** * * **
1310373 -G-GAGTCGATACTTGTCTTATTTAAGGGATGGACTTTGATTTTAAAGAAAATACGAT-G-AAGA
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCT-ATCAAAA-ACGATGGAAAGA
* ** ** * *
1310434 AAAGATTTTCTTGTAAAAGAAAATCATCAATTT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * **
1310467 CAT-TAATCTTAATG-AGGAGTATATGTTTATAGTCCCTAATC--GCAAAATGAATGAAGATCAT
1 CATGT-ATCCTAATGAAGG-GAATGTGTTTATGGTCCC-AATCTTG-AAAA-GAATGGAGATTGT
* * * ** *** * * *
1310528 TACCAGAACCCATGTTTGTCACATTTAAGGCCCGAA-TTTAGATTTTA-CAAAAATTGGTGGGAA
61 TACGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTT-GATTCTATCAAAAA-CGAT-GGAA
* * *
1310591 A-AAAAGCCTTTCTTACGAAACCAAAGCACCAATAT
123 AGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * *
1310626 CATGTACCCTATTCAGAA--GACTGTGTTTATGGTACCTAATCTTGAAAATAATGGGGAATAG-T
1 CATGTATCCTAAT--GAAGGGAATGTGTTTATGGT-CCCAATCTTGAAAAGAATGGAG-ATTGTT
* * * * * ** * *
1310688 ATGAGTATTC-TTGTTTGTCTTATTTGAGAGACAAACTTTCATTCCATCAAAAACGATGGAAAGA
62 ACGAG-AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* * *
1310752 AAAGCTTTTCTTGCGACACCAAGGCATCAATGT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * *
1310785 CATGTATCTTAATGAAGGGAATTTGTTT-TGGATCCCAATCTTGAAAAGAATGGAGATTGTCACG
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * ** *
1310849 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAT-AAAAAATATGGCGAAGAAAA
65 AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGG-AAAGAAAA
* * * * ** *
1310913 GATTTCCATGCAAAAGAAAATCATCAATAT
129 GCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * ** * **
1310943 CATTTATCCTAAT-AAGGCGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTA
1 CATGTATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* * * * * * ** * **
1311006 CTAGAATCCATGTTTGCCTCATTTGAGGCATGAACTTAAACTT-TA-CAAAAA--TTGGAGGGGA
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTCTATCAAAAACGATGGA-AAG-
* * * *
1311067 AAAAGCCTTTCTTGCGAAAGCAAAGCACCACTAT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * *
1311101 TATGTATCCTATTCAGAA--GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG-GAATAG-T
1 CATGTATCCTAAT--GAAGGGAATGTGTTTATGGT-CCCAATCTTGAAAAGAATGGAG-ATTGTT
* * * ** * * *
1311162 ATGAGAATTC-ATGTTTGTCTTATTTATGAGACAAACTTTCAATCCATCAAAAACGATGGAAAGA
62 ACGAGAA-TCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* * * *
1311226 AAAGCTTTTTTTGCGATACCAAAGCTTCAATGT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * *
1311259 CACGTATCCTAATGAAGGGAATGTATTTTTGGATCCCAATCTTGAAAAGATTAGAGATTGTTAC-
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAATGGAGATTGTTACG
* * * * ** *
1311323 AGGAATCGATGCTTATTTTATTTATGGGATGAACTTTGATT-T-T-AAAGAATAAAGGGTAAAGA
65 A-GAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAA-AA-CGATGG-AAAGA
* ** ** *
1311385 AAAG-ATTTC-CACGAAAAAGAAATTCATCAATAT
126 AAAGCTTTTCTTGCG-AAACCAAA-GCATCAATAT
* * * * * * * *
1311418 CAT-TAATCTTAACG-AGGAGAATATGTTTATAGTGCCTAATCTT-AAAATAAATGAAGA-TGAA
1 CATGT-ATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTG-T
* * * * * * ** * *
1311479 TA-GTAAAATCCATGTTTGTCTCATTTGAGGTAGGAACTAAGACTT-TA--AAAAATTTGGTGGA
61 TACG-AGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTCTATCAAAAA--CGATGGA
* * * * *
1311540 AAAAAAAGCCTTTCCTGTGAAACCAAAGCACCAATAT
122 AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * * *
1311577 -AGGGTATCCAAATG-AGAAGACTATGTTTATGGTGCTAATCTTGAAAAGAATGGAGAATAGTAT
1 CA-TGTATCCTAATGAAG-GGAATGTGTTTATGGTCCCAATCTTGAAAAGAATGGAG-ATTGT-T
* * * * *
1311640 A--AGTATTGTTGTTTGTCTTTATTTAAGAGG-TAAACTTTGATTCTATCAAAAACAATGGAAAG
62 ACGAGAATCGATGTTTGTC-TTATTTAAG-GGATGAACTTTGATTCTATCAAAAACGATGGAAAG
* *
1311702 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
125 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
1311736 TAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACT-AAGATTGTTAC
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAGAA-TGGAGATTGTTAC
* * *
1311800 GAGAATCGCTGCTTGTCTTATTTAAGGGATGAACATTGATT-T-T-AAAATA--A-GGCAAAGAA
64 GAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAA-ACGATGG-AAAGAA
* * ** * *
1311859 TAG-ATTTCATTG-GAAAAGAAAATCTTCAATAT
127 AAGCTTTTC-TTGCG-AAACCAAAGCATCAATAT
* * * * ** ** * *
1311891 TATTTATCGTAATG-AGGAGAATGTGTTTATAGTGCTTAATC-ACAAAATGAATGAAGATCGTTA
1 CATGTATCCTAATGAAGG-GAATGTGTTTATGGT-CCCAATCTTGAAAA-GAATGGAGATTGTTA
* * * * * * * * * * *
1311954 CTAGAATCCATGTTTGTCTCATTTGAGGCACGCACTTAGACTT-TAT-AAAAA--TTGGTAGGCA
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTCTATCAAAAACGATGGAAAG--
*
1312015 AAAAGCCTTTCTTGCGAAACCAAAGCACTC-ATAT
125 AAAAGCTTTTCTTGCGAAACCAAAGCA-TCAATAT
* ** ** ** * * * * * * *
1312049 CGTGTATCCT-ATTCAGAAAACCATATTTATGGTGCCTAATCCTAAAAAGAAAGGGGATCAGTAT
1 CATGTATCCTAATGAAGGGAA-TGTGTTTATGGT-CCCAATCTTGAAAAGAATGGAGAT-TGT-T
* * ** * * * *
1312113 A--AGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGTAAAAA
62 ACGAG-AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGA
* * *
1312175 AAAGCTTTTGTTGCGACACCAAAGCATCAATGT
126 AAAGCTTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * *
1312208 CAAGTATCCTAATAAAGGGACTGTGTTTTTGGATCCCAATCTTG-AAAGTAATTGAGATTTGTTT
1 CATGTATCCTAATGAAGGGAATGTGTTTATGG-TCCCAATCTTGAAAAG-AATGGAGA-TTGTTA
* * * ** * *
1312272 CAAGAGTTGATACTTATCTTATTTAAGGGATGGACTTTGATT
63 CGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATT
1312314 TTAAAGAAAA
Statistics
Matches: 4536, Mismatches: 1459, Indels: 857
0.66 0.21 0.13
Matches are distributed among these distances:
151 3 0.00
152 7 0.00
153 15 0.00
154 99 0.02
155 108 0.02
156 277 0.06
157 759 0.17
158 1466 0.32
159 1565 0.35
160 209 0.05
161 25 0.01
162 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (158 bp):
CATGTATCCTAATGAAGGGAATGTGTTTATGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGA
GAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGC
TTTTCTTGCGAAACCAAAGCATCAATAT
Found at i:1315121 original size:33 final size:33
Alignment explanation
Indices: 1315067--1315129 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
1315057 ACAAGCAATG
*
1315067 TATCGATACAATTCATCATGTATCGATACATTA
1 TATCGATACAATTCATCATGTATCAATACATTA
1315100 TATCGATACAATGT-A-CTATGTATCAATACA
1 TATCGATACAAT-TCATC-ATGTATCAATACA
1315130 AACAGTGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 1 0.04
33 25 0.93
34 1 0.04
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (33 bp):
TATCGATACAATTCATCATGTATCAATACATTA
Found at i:1315184 original size:19 final size:19
Alignment explanation
Indices: 1315160--1315226 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
1315150 TACCAGTTTC
1315160 ATGTATCGATACAATGAAT
1 ATGTATCGATACAATGAAT
1315179 ATGTATCGATAC-----A-
1 ATGTATCGATACAATGAAT
1315192 ATGTATCGATACAATGAAT
1 ATGTATCGATACAATGAAT
1315211 ATGTATCGATACAATG
1 ATGTATCGATACAATG
1315227 TATTGATACA
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 12 0.29
14 1 0.02
18 1 0.02
19 28 0.67
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATGAAT
Found at i:1315197 original size:13 final size:13
Alignment explanation
Indices: 1315179--1315237 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
1315169 TACAATGAAT
1315179 ATGTATCGATACA
1 ATGTATCGATACA
1315192 ATGTATCGATACA
1 ATGTATCGATACA
1315205 ATG-A---AT---
1 ATGTATCGATACA
1315211 ATGTATCGATACA
1 ATGTATCGATACA
*
1315224 ATGTATTGATACA
1 ATGTATCGATACA
1315237 A
1 A
1315238 AGCATAATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
6 3 0.08
7 1 0.03
9 2 0.05
10 2 0.05
12 1 0.03
13 29 0.76
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1315201 original size:32 final size:32
Alignment explanation
Indices: 1315160--1315256 Score: 158
Period size: 32 Copynumber: 3.0 Consensus size: 32
1315150 TACCAGTTTC
1315160 ATGTATCGATACAATGAATATGTATCGATACA
1 ATGTATCGATACAATGAATATGTATCGATACA
1315192 ATGTATCGATACAATGAATATGTATCGATACA
1 ATGTATCGATACAATGAATATGTATCGATACA
* * *
1315224 ATGTATTGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAATGAAT-ATGTATCGATACA
1315257 TCTGGGTGTG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 48 0.79
33 13 0.21
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACAATGAATATGTATCGATACA
Found at i:1315844 original size:22 final size:22
Alignment explanation
Indices: 1315816--1315857 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
1315806 AGATAAACAT
*
1315816 ATTTCTCCCCCTTTATCAAAGC
1 ATTTCTCCCCCTTCATCAAAGC
1315838 ATTTCTCCCCCTTCATCAAA
1 ATTTCTCCCCCTTCATCAAA
1315858 TATCAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.38, G:0.02, T:0.36
Consensus pattern (22 bp):
ATTTCTCCCCCTTCATCAAAGC
Found at i:1323946 original size:13 final size:13
Alignment explanation
Indices: 1323905--1323957 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1323895 CCGTTACAAG
1323905 CAATGTATCGATA
1 CAATGTATCGATA
1323918 CAA--T-TC-AT-
1 CAATGTATCGATA
1323926 C-ATGTATCGATA
1 CAATGTATCGATA
*
1323938 CATTGTATCGATA
1 CAATGTATCGATA
1323951 CAATGTA
1 CAATGTA
1323958 CTATGTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 19 0.59
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1323950 original size:33 final size:33
Alignment explanation
Indices: 1323908--1323972 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1323898 TTACAAGCAA
1323908 TGTATCGATACAAT-T-CATCATGTATCGATACAT
1 TGTATCGATACAATGTAC-T-ATGTATCGATACAT
1323941 TGTATCGATACAATGTACTATGTATCGATACA
1 TGTATCGATACAATGTACTATGTATCGATACA
1323973 AACAGTGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 27 0.90
34 2 0.07
35 1 0.03
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTACTATGTATCGATACAT
Found at i:1337107 original size:40 final size:40
Alignment explanation
Indices: 1337052--1337132 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
1337042 TGCGAAACGA
1337052 AAGCATCAATATCGTGTATCCAAATGAAACGACTATGTTT
1 AAGCATCAATATCGTGTATCCAAATGAAACGACTATGTTT
1337092 AAGCATCAATATCGTGTATCCAAATGAAACGACTATGTTT
1 AAGCATCAATATCGTGTATCCAAATGAAACGACTATGTTT
1337132 A
1 A
1337133 CGGTGCCCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (40 bp):
AAGCATCAATATCGTGTATCCAAATGAAACGACTATGTTT
Found at i:1338420 original size:475 final size:475
Alignment explanation
Indices: 1335068--1342744 Score: 8367
Period size: 475 Copynumber: 16.1 Consensus size: 475
1335058 AATCATTAAT
* * * * * *
1335068 ATCATTACTATAATCCATATCTATCTCATTTGAGGCGCGAACTTAGACTATAC-AAAATTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** * *
1335132 GGAAAAAGCCTTTCTTTAGAAACCAAAGCACCAATATC----A---TATTCAGAAGACTATGTTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
* * *
1335190 ATGGTGCCTAATCTTGAAAAGAATGGGGAATACTATGAGAATTCTTATTTGTCTTATTTGAGAGA
131 ATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAGA
* * **
1335255 CAAAC-TTCTATTCCATTAAAAATGGTAAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
196 CAAACTTTC-AATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * **
1335319 GTCATGTATCCTAATGAAGGGAATGTGTATTTGGATCCTAATCTTGAAAAGAATAGAGATCATTG
260 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTG
* * ** * *
1335384 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAATTACAACAAAGAAG
325 TGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAGAAA
* * * * *
1335449 GGATTTTCATGCAAAAAAAAATCATCAATATTATTTATCCTAATGAGGTGAATGTGTTTATAGTG
390 AGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
* *
1335514 CCTAATCACAAAATAAAAGAAG
454 CCTAATCACAAAATGAATGAAG
* * *
1335536 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACGATAATTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * *
1335601 AGAAAAAGCTTTTCTTGCCAAACGAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATATTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
* * * * *
1335666 ATTGGTGCCTAATCCT-AAAATGAATGGGG--TAGTATGAGTATTCATGTTTATCTCCA-TTAAG
131 A-TGGTGCCTAATCTTGAAAA-GAATGGGGAATAGTATGAGTATTCATATTTGTCT-TATTTGAG
* * * * **
1335727 AGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCA
193 AGACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
1335792 ATGTCATGTATCTTAATGAAGGGAATGTGTTTTTCGATCCCGATCTTGAAAAGGATGGAGATTGT
258 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGT
** * * * * * *
1335857 TACGAGAATTGATAG-TTTTCTTATTTAAT-TGATGAAGTTTGATTTTAAAGAAAATAC-AGTAA
323 TGTGAGAATCGAT-GCTTGTCTTATTT-ATGGGATGAACTTTGATTTTAAAGAAAAAACGA-CAA
** * * * * **
1335919 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATAAATCATAATGAGGAGTACGCATTTA
385 AGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTA
*
1335984 TAGTGCCTAATCACAAAATGAATAAAG
449 TAGTGCCTAATCACAAAATGAATGAAG
* * * * * **
1336011 ATCGTTACTAGAATCCATGTGTGTCTCATTTGAGGAAC-AAGTTTAGGA-TTTACGAAAATTGAA
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTA-GACTTTACAAAAATTGGT
* * * * * * * * * *
1336074 AGGAATAAAAGCTTTTATTGCGAAACCAAAGCACCAATATCGGGAATCCTAGTAAGAAGACAATG
64 GGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATG
* * * * * * *
1336139 TTTATGGTG-CTAATATTGAAAAGAATGGGGAATAGTTTAAGTATT-ATTGTTTATCTTATATAA
128 TTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA-TATTTGTCTTATTTGA
* * * * * * *
1336202 GACACAAACTTTGATTCTAT-AAAAAGTGGTGGGAAGAAAAGCTTTTCCTGCAACACCAAAGCAT
192 GAGACAAACTTTCAATCCATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* **
1336266 CAATGCCATGTATCCTAATGAAGGGAATGCATTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
256 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
** * * * *
1336331 GTTGCAAGAATCGATGGTTGTCTTATTTAAGGGATGAACTTTAATTTTAAAGAAAATACGACAAA
321 GTTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAA
*
1336396 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGTGTTTAT
386 GAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
1336461 AGTGCCTAATCACAAAATGAATGAAG
450 AGTGCCTAATCACAAAATGAATGAAG
* * * * *
1336487 ATCTTTACTAGAATCCATGTTTCTCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGAGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * **
1336552 GGAAGAAGCTTTTCTTGAGAAACGAAAGCATCAATATCGTGTATCATAACGAGAAAACTATGTTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
* * * * *
1336617 ACGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTT-TTTTACGAG
131 ATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGA-GAG
* * * * * * *
1336681 ACAAACTTTGATTCAATCAAAAACGGTGGAAA-AAACA-TTTTTCTTGCGACCCCAAAGCTTCAA
195 ACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAA-AGCTTTTCTTGCGACACCAAAGCATCAA
* * * * *
1336744 TGTCATGTATCATAATGAAGGGAATGTGTTTTTCGATCCTAATCTTGAAAAGAATTGAGATTTTT
259 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * * * * * *
1336809 GTGAAAATTGATGGTTGACTTATTTAAGGGATGAA-TATTGATTTT-AAGAAAATAGGGCAAAGA
324 GTGAGAATCGATGCTTGTCTTATTTATGGGATGAACT-TTGATTTTAAAGAAAAAACGACAAAGA
*** * * * *
1336872 ATAA-ATTTTTGTGGAAAAGAAAATCATCACTATTATTTATCCTAATGAA-GAAAATGTGTTTAT
388 A-AAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAT-AAGGAGAATGTGTTTAT
*
1336935 AGTGCCTAATCAAAAAATGAATGAAG
450 AGTGCCTAATCACAAAATGAATGAAG
* * * * *
1336961 ATCATTACCATAATCCATGTTTCTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * *
1337026 GGAAACAGCTTTTTTTTGCGAAACGAAAGCATCAATATCGTGTATCCAAATGA-AACGACTATGT
66 GGAAAAAGC-CTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAA-AACTATGT
* * * * * *
1337090 TTAAGCAT-CAATATCGTGTATCCAAATGAAACGACTATGTTTACGGTGCCCAATCCTGAAAAGA
129 TTATG-GTGC-----C-T-AAT-C--TTGAAAAGA--ATG-----GG-G---AA---T----AGT
* * * ** *
1337154 ATGGGGATT-AGCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT-AATTCCATCAAA
165 ATGAGTATTCA-TATTTGTCTT-A--TTTG---------AGAGACAAACTTTCAA-TCCATCAAA
* * * * *
1337217 AACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAACCATCAATGTCATGTATCCTAAAGAAGAG
216 AATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
* * * ** *
1337282 AATGTGTTTTTCGATCCCAATCTTGAAAAGAATGTAGATTGATGCAAGAATCAATGCTTGTCTTA
281 AATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGTGAGAATCGATGCTTGTCTTA
* * *
1337347 TTTAAGGGATGAACTTTGATTTTAAAGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
346 TTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAGAAAAGATTTCCATGCAAAA-AAAA
* * *
1337412 TCATCAATATCTTTTATCCTAATAGGGAGAATGTG-TTATTAGTGCCTAATCACAAAATGAAGGA
410 TCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGA
1337476 AG
474 AG
** * *
1337478 ATCATTACTAGAATCCATGTTTGTCTCATTCAATGCACGAACTTAGACTTTACAAAAATGGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1337543 GGAAAAAGCCTTTCTTGCGAAACCAAAGTACCAATATCGTGTATCCTATTCAAAAAACTATGTTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
* * * * *
1337608 ATGGTGCCTCATCTTGAAAAGAATTGGGAATAGTATGAGAATTCTTGTTTGTCTTATTTGAGAGA
131 ATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAGA
* *
1337673 CAAAC-TTCAATTCCATCAAAAATGGTGGAAAGAAAAACTTTTCTTG-GACAACAAAGCATCAAT
196 CAAACTTTCAA-TCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
*
1337736 GTCAT-TATCCTAATGAAAGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTG
260 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTG
* * * * **
1337800 TAAGAATCGATGCTTGTCTTGTTTATGAGATGAATTTTGATTTTAAAGAAAGTACGACAAAGAAA
325 TGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAGAAA
* * * *
1337865 AGATTTTCATGCAAAAAAAAATCATCAATATCATTTATACTAATAAAGAGAATGTGTTTATAATG
390 AGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
*
1337930 CCTAATCAAAAAATGAATGAAG
454 CCTAATCACAAAATGAATGAAG
* *
1337952 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGGACTTAGTCTTTACAAAAATTTGG-G
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGTG
* * * * *
1338016 GGGAAAAGGCCTTTCGTGTGAAACCAAAGCACCAATATCATGTATCCTATTTAGAAAACTATGTT
65 GGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTT
* * * * * *
1338081 TATGGGGCCTAATCTT-AAAAAAATGTGGAGTAGTATGAGCATTCATGTTTGTCTTATTTGAGAG
130 TATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAG
* * *
1338145 ACAAACTTTCAATCCATGAAAAATGGTGGAAATAAAAGCTTTTCTTGCGACACCAAAGCTTCAAT
195 ACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* *
1338210 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGATTGGAGATTGTTA
260 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTG
* * * * **
1338275 TGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTTATTTTAAACAATAAAAGGGTAAAGAA
325 TGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAA-AAAACGACAAAGAA
* * * * * *
1338340 AAGATTTTCACGCAAAAAAAATCATCAACATCATTAATCTTAATGAGGAGAATGTGTTTATAGTG
389 AAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
* * **
1338405 CTTAACCTTAAAATGAATGAAG
454 CCTAATCACAAAATGAATGAAG
* * * * ** *
1338427 ATCAATAGC-AAAATCAATGTTTGTCTCATTTGAGGCAGGAACAAAGACTTTAAAAAAATTGGTG
1 ATCATTA-CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
** * * * * *
1338491 GAAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGAT
65 GGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTT
* *
1338556 TAT-G-GCACTAATCTTGAAAAGATTGGGGAATAGTATGAGTATT-ATTATTTGTCCTTATTTAA
130 TATGGTGC-CTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA-TATTTGT-CTTATTTGA
* * * * ** *
1338618 GAGATACACTTTGATTTTATCAAACCAA---TGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
192 GAGACAAACTTTCAATCCATCAAA--AATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
1338680 TCAATGTCAGGTATCCTAACGAAGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGAGAT
255 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * * * *
1338745 AGTTGCGAGAATCGATGCTTATCTTATTTAGGGGATGAACTTTTATTTTAAAG-AAAAACGACAA
320 TGTTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAA
* *
1338809 AGAAAAGATTTTCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTTT
385 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
*
1338874 AGTGCCTAATTACAAAATGAATGAAG
450 AGTGCCTAATCACAAAATGAATGAAG
* * *
1338900 ATCATTACTATAATCCATATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * *
1338965 GGAAAAAGCCTTCCTTGCGAAACCAAAGCCCCAATAACGTTTATCCTATTCAGAAGACTATGTTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
* * * * *
1339030 ATGGTGCCTAATCTTGAAAAGAATGGCGAAGAGTGTGAGAATTCAT-GTT-TCTTATTTGAGAGA
131 ATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAGA
* * * * * * * *
1339093 CAAACCTCCATTCCGTAAAAAACGGTAGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATG
196 CAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * *
1339158 TCATGTATCCTAATAAAGGGAATGAGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGA
261 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGT
* * ** * *
1339223 GAGAATCAATGCTTCTCTTATTTATGATATGAACTTTGATTTTAAAGAAAAATATGACGAAGAAA
326 GAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAA-ACGACAAAGAAA
*
1339288 AGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATAAGTAGAATGTGTTTATAGTG
390 AGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
* * *
1339353 CTTAGTCAAAAAATGAATGAAG
454 CCTAATCACAAAATGAATGAAG
* *
1339375 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACCAAAATTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1339440 GGAAAAAGCCTTTTTTGTGAAACCAAAGCACCAATATCGTGTATCCTATTCA-AAAGACTATGTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAA-ACTATGTT
* * * *
1339504 TATAGTGCCTAATCTGGAAAAGAAT--GG----G---GA--A--CA-GTTTGTTTTATTTGAGAG
130 TATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAG
* * * **
1339555 ACAAACTTCCATTCCCTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAAGAAAGCATCAAT
195 ACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* *
1339620 GTCTTGTATCCTAATGAAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGATATTGTT
260 GTCATGTATCCTAATG-AAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * * *
1339685 GTTAGGATCGATGCTTGTCTTATTTATGAGATGAACTTTGATTTTAAAGAAAATACGACAAAGAA
324 GTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAGAA
* *
1339750 AAGATTTTCAAGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
389 AAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
*
1339815 CCTAATCACAAAATGAATGGAG
454 CCTAATCACAAAATGAATGAAG
* *
1339837 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
1339902 GGAAAAACCCTTTCTTGTGAAACCAAAGCACCAATATCGTGTGTCCTATTTA-AAAGACTATGTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAA-ACTATGTT
* * *
1339966 TATGGTACCAAATCTTGAAAAGAAT-GGGAATAGTATGAGTATTCATATTTGTCTTACTTGAGAG
130 TATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAG
* * * ** *
1340030 ACAAATTTTTAATCCATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACATGAAAGCATCAAC
195 ACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * *
1340095 ATCTTTTATCCTAAT-AAGGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGATAGTGTT
260 GTCATGTATCCTAATGAA-GGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
* * *
1340159 GTGAGAATTGATGCTTGTCTTATTTATGGGATGAACTTTAATTTTAAAGAAAATACGACAAAGAA
324 GTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAGAA
* * * * * *
1340224 AAGATTTTCAAGCAAAAAAAATCATCAATATCATTTATCCTAATAAAGAGAGTCTGTTTATAATG
389 AAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
1340289 CCTAATCACAAAATGAATGAAG
454 CCTAATCACAAAATGAATGAAG
* * * *
1340311 ATCATTACTAGAATCCAGGTTTGTCTGATTTGAGGCACGAACTTAGACTTTATAAAAATTAGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1340376 GGAAAAAGCCTTTCTTGTGAAACCAAAGCTCCAATATCGTGTATCCTATTTA-AAAGACTATGTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAA-ACTATGTT
* * *
1340440 TATGGTGCCTTATCTTGAAAAGAATGGGGAATAGTATGAGTATTGATATTTGTCTTACTTGAGAG
130 TATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAG
* ** *
1340505 ACAAACTTTCAA-CCATCAACAATGGTGGAAAGAAAAATTTTTCTTGCAACACCAAAGC-TACAA
195 ACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT-CAA
* * * *
1340568 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCTAATCTTGAAAATATTGGAGATTGTT
259 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
** * * **
1340633 ACGAGAATCGATGCTTGTCTTACTTATGGGATGAACTTTGATTTTAAACAATAAAA-GGTAAAGA
324 GTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAA-AAAACGACAAAGA
* * * *
1340697 AAAGATTTCCATGCAAAAGAAATCCATCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAG
388 AAAGATTTCCATGCAAAAAAAAT-CATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAG
* **
1340762 TGCCTAACCTTAAAATGAATGAAG
452 TGCCTAATCACAAAATGAATGAAG
* * * * * * *
1340786 ATCAATAGTAAAATCCACGTTTGTCTCATTTGAGGTAGGAACTAAGACTTTA-AAAAATTGGTTG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TG
** * * ** **
1340850 GAAAAAAAAG-CTTTCTTGCGAAACCAAAGCACCAGTATCGAGTATCCTAAGGAGATGACTATGT
65 G-GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGT
* ** * * *
1340914 TT-TGGGTG-CTAATCTTGAAAAAAATTAGGAATAGTATGTGTATT-ATTATGTGTCTTTATTTA
129 TTAT-GGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA-TATTTGTC-TTATTTG
* * * * * * * * *
1340976 AGAGATAAACTTTGATTCTAT-GAAAATGGTGGGAAGAAAGGCTTTTCTTGCAACACCAAACCAT
191 AGAGACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
1341040 CAATGCCATGTACCCTAATAAAGGGAATGCGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
256 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
* * * *
1341105 GTTGCGAGAATCGATGCTTTTCTTATTTATGGGATGAACTTTGATTTGAAA-AAAAATATGACAA
321 GTTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAA-ACGACAA
* * * * * * * *
1341169 AGAAAAAATTTTCATGCAAAAGAAATTCATCAATATCATTAATCTTCATGAGAAGAATGTGTTTA
385 AGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTA
* *
1341234 TAGTGCTTAA-CATTAAAATGAATGAAG
449 TAGTGCCTAATCA-CAAAATGAATGAAG
* * * * * * * * **
1341261 GTCAATAGTAAAATCCATGTTTGTCTCATTTGAGGCAGGAACTAAGACTTTAAAAAAATTGATAA
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** * * * * *
1341326 AAAAAAAGCCTTTCTTGCGAAACCAAAGCACTAGTATCGGGTATCCTAATGAGAAGACTATGTTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
* * *
1341391 ATGGTG-CTAATCTTGAAAAGAATGGGGAATAGTATGTGTATT-ATTATTTATCTTTATTTAAGA
131 ATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA-TATTTGTC-TTATTTGAGA
* * * * * * * ** *
1341454 GATAAACTTTGATTCTATCAAAACA--ATGGAAAAAAAAGCTTTTCTTGTGACAAGAAATCATCA
194 GACAAACTTTCAATCCATCAAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * * ** * *
1341517 ATGCCTTGTATGCTATTGAAGATAGA-GTGTTTTTGGATCCCAATCTTAAAAAGAATGGATATTG
258 ATGTCATGTATCCTAATGAAGGGA-ATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* *
1341581 TTGCTG-GAATCGATGCTTGTCTTATTTATGGGATAAACTTTGATTTTAAAGAAAATACGACAAA
322 TTG-TGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAA
* * *
1341645 GAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAGTGTCTTTAT
386 GAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
1341710 AGTGCCTAATCACAAAATGAATGAAG
450 AGTGCCTAATCACAAAATGAATGAAG
* * * *
1341736 ATCATTACTAGAATCCAGGTTTGTCTAATTTGAGGCACGAACTTAGACTTTATAAAAATTAGTGG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1341801 GGAAAAAGCCTTTCTTGTGAAACCAAAGCTCCAATATCGTGTATCCTATTTA-AAAGACTATGTT
66 GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAA-ACTATGTT
* * * *
1341865 TATGGTGCCTTATCTTGAAAAGAATGGGGAATAGTATGAGTATTGATATTTTTCTTACTTGAGAG
130 TATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAG
* ** *
1341930 ACAAACTTTCAA-CCATCAACAATGGTGGAAAGAAAAATTTTTCTTGCAACACCAAAGC-TGCAA
195 ACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT-CAA
* * * * *
1341993 TGTCATGTATCCTAATGAAGAGAATGTGTTTCTGGATCCTAATCTTGAAAATATTGGAGATTGTT
259 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTT
** * * **
1342058 ACGAGAATCGATGCTTGTCTTACTTATGGGATGAACTTTGATTTTAAACAATAAAA-GGTAAAGA
324 GTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAA-AAAACGACAAAGA
* * * *
1342122 AAAGATTTCCATGCAAAAGAAATCCATCAATATCATTCATCTTAATGAGGAGAATGTGTTTATAG
388 AAAGATTTCCATGCAAAAAAAAT-CATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAG
* **
1342187 TGCCTAACCTTAAAATGAATGAAG
452 TGCCTAATCACAAAATGAATGAAG
* * * * * * *
1342211 ATCAATAGTAAAATCCACGTTTGTCTCATTTGAGGTAGGAACTAAGACTTTA-AAAAATTGGTTG
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TG
** * * ** **
1342275 GAAAAAAAAG-CTTTCTTGCGAAACCAAAGCACCAGTATCGGGTATCCTAAGGAGATGACTATGT
65 G-GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGT
* * * * * *
1342339 TTTTGGTG-CTAATCTTGAAAAAAATTGGGAATAGTATGTGTATT-ATTATGTGTCTTTATTTAA
129 TTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCA-TATTTGTC-TTATTTGA
* * * * * * * * *
1342402 GAGATAAACTTTGATTCTAT-GAAAATGGTGGGAAGAAAGGCTTTTCTTGCAACACCAAACCATC
192 GAGACAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
1342466 AATGCCATGTACCCTAATAAAGGGAATGCGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTG
257 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTG
* * * * * *
1342531 TTGCGAGAATCGATGCTTTTCTTATTTATGGGATGAACTTTGATTTTAAGGAATAAAGGGCAAAG
322 TTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAG
* * * * *
1342596 AAAAGATTTCCATGCAAAATAAATTCACCAATATCATTTATCCTAAAAATGAGAATGTGTTTATT
387 AAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATA
1342661 GTGCCTAATCACAAAATGAATGAAG
451 GTGCCTAATCACAAAATGAATGAAG
* * *
1342686 ATCATTACTAGAATCCGTGTTTGTCTCATTTAAGGCACGAACTTGGACTTTACAAAAAT
1 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
1342745 CAATGGAAAG
Statistics
Matches: 6140, Mismatches: 885, Indels: 360
0.83 0.12 0.05
Matches are distributed among these distances:
462 215 0.04
463 105 0.02
464 94 0.02
466 2 0.00
467 1 0.00
468 46 0.01
469 44 0.01
470 2 0.00
471 23 0.00
472 138 0.02
473 296 0.05
474 1205 0.20
475 2845 0.46
476 655 0.11
477 32 0.01
478 2 0.00
480 1 0.00
481 1 0.00
482 2 0.00
483 1 0.00
485 11 0.00
487 4 0.00
488 14 0.00
492 3 0.00
493 1 0.00
495 2 0.00
496 1 0.00
498 1 0.00
499 3 0.00
502 1 0.00
503 14 0.00
504 2 0.00
506 7 0.00
507 3 0.00
508 1 0.00
509 2 0.00
510 1 0.00
511 1 0.00
514 1 0.00
515 33 0.01
516 171 0.03
517 153 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTATTGAGAAAACTATGTTT
ATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTGAGAGA
CAAACTTTCAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGT
GAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAAGAAAAAACGACAAAGAAAA
GATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAG
Found at i:1340199 original size:158 final size:158
Alignment explanation
Indices: 1339572--1340284 Score: 399
Period size: 158 Copynumber: 4.5 Consensus size: 158
1339562 TCCATTCCCT
* * *
1339572 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAAGAAAGCATCAATGTCTTGTATCCTAATGA
1 CAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCTTGTATCCTAAT--
* * * * *
1339637 AAGG-GAATGTGTTTTTGG-ATCCCAATCTTGAAAAGAATGGATATTGTTGTTAGGATCGATGCT
64 AAGGAGAATGTGTTTATGGTA-CCCAATCTTGAAAAGAATGGATATAGTTGTGAGAATCCATGCT
* *
1339700 TGTCTTATTTATGAGATGAACTTTGAT-TTTA
128 TGTCTTATTTA-GAGACGAACTTTAATCTTTA
* ** * ** * *
1339731 AAGAAAATACG-ACAAAGAAAAGATTTTCAAGC-AAAAAAAATCATCAATATCATT-TATCCTAA
1 CA-AAAATA-GTGGAAAGAAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATC-TTGTATCCTAA
* * * ** * *
1339793 TAAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGGAGATCA-TTACT-AGAATCCAT
63 TAAGGAGAATGTGTTTATGGTACCCAATCTTGAAAA-GAATGGATAT-AGTT-GTGAGAATCCAT
* *
1339855 GTTTGTCTTATTT-GAGGCACGAAC-TTAAACTTTA
125 GCTTGTCTTATTTAGA-G-ACGAACTTTAATCTTTA
* ** * * * ** * * * *
1339889 CAAAAATTGGTGGGGA-AAAACCCTTTCTTGTGAAACCAAAGCACCAATATCGTGTGTCCTATTT
1 CAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCTTGTATCCTA-AT
* * * * * * * **
1339953 AA-AAGACTATGTTTATGGTACCAAATCTTGAAAAGAATGGGA-ATAG-TATGAGTATTCATATT
64 AAGGAGAATGTGTTTATGGTACCCAATCTTGAAAAGAAT-GGATATAGTTGTGAGAATCCATGCT
* * * **
1340015 TGTCTTACTTGAGAGACAAATTTTTAATCCAT-
128 TGTCTTA-TTTAGAGACGAA-CTTTAATCTTTA
* * * *
1340047 CAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACATGAAAGCATCAACATCTTTTATCCTAATAA
1 CAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCTTGTATCCTAATAA
* * **
1340112 GGGGAATGTGTTTTTGG-ATCCCAATCTTGAAAAGAATGGATAGT-GTTGTGAGAATTGATGCTT
66 GGAGAATGTGTTTATGGTA-CCCAATCTTGAAAAGAATGGATA-TAGTTGTGAGAATCCATGCTT
* *
1340175 GTCTTATTTATGGGATGAACTTTAAT-TTTA
129 GTCTTATTTA-GAGACGAACTTTAATCTTTA
* ** * ** * *
1340205 AAGAAAATACG-ACAAAGAAAAGATTTTCAAGC-AAAAAAAATCATCAATATCATT-TATCCTAA
1 CA-AAAATA-GTGGAAAGAAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATC-TTGTATCCTAA
* * *
1340267 TAAAGAGAGTCTGTTTAT
63 TAAGGAGAATGTGTTTAT
1340285 AATGCCTAAT
Statistics
Matches: 407, Mismatches: 112, Indels: 71
0.69 0.19 0.12
Matches are distributed among these distances:
156 3 0.01
157 63 0.15
158 224 0.55
159 92 0.23
160 24 0.06
161 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
CAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCTTGTATCCTAATAA
GGAGAATGTGTTTATGGTACCCAATCTTGAAAAGAATGGATATAGTTGTGAGAATCCATGCTTGT
CTTATTTAGAGACGAACTTTAATCTTTA
Found at i:1343964 original size:13 final size:13
Alignment explanation
Indices: 1343946--1343971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1343936 CAATTTTTTG
1343946 TGTATCGATACAT
1 TGTATCGATACAT
1343959 TGTATCGATACAT
1 TGTATCGATACAT
1343972 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1344036 original size:21 final size:21
Alignment explanation
Indices: 1344010--1344085 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1344000 CTGCCAAGAA
*
1344010 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1344031 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1344051 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1344072 ATGTATCGATACAT
1 ATGTATCGATACAT
1344086 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1344056 original size:20 final size:20
Alignment explanation
Indices: 1344031--1344103 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1344021 CATCTTTTTT
1344031 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1344051 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1344072 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1344092 ATGTATCGATAC
1 ATGTATCGATAC
1344104 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1344067 original size:41 final size:41
Alignment explanation
Indices: 1344010--1344103 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1344000 CTGCCAAGAA
*
1344010 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1344051 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1344092 ATGTATCGATAC
1 ATGTATCGATAC
1344104 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1347009 original size:15 final size:15
Alignment explanation
Indices: 1346989--1347019 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1346979 ATTTCGTTTG
*
1346989 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1347004 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1347019 G
1 G
1347020 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1348852 original size:21 final size:21
Alignment explanation
Indices: 1348823--1348867 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1348813 AAGTTTTCAT
*
1348823 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1348843 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1348865 TTT
1 TTT
1348868 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1351098 original size:13 final size:13
Alignment explanation
Indices: 1351080--1351105 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1351070 CAATTTTTTG
1351080 TGTATCGATACAT
1 TGTATCGATACAT
1351093 TGTATCGATACAT
1 TGTATCGATACAT
1351106 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1351170 original size:21 final size:21
Alignment explanation
Indices: 1351144--1351219 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1351134 CTGCCAAGAA
*
1351144 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1351165 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1351185 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1351206 ATGTATCGATACAT
1 ATGTATCGATACAT
1351220 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1351190 original size:20 final size:20
Alignment explanation
Indices: 1351165--1351237 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1351155 CATCTTTTTT
1351165 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1351185 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1351206 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1351226 ATGTATCGATAC
1 ATGTATCGATAC
1351238 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1351201 original size:41 final size:41
Alignment explanation
Indices: 1351144--1351237 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1351134 CTGCCAAGAA
*
1351144 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1351185 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1351226 ATGTATCGATAC
1 ATGTATCGATAC
1351238 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1352608 original size:12 final size:12
Alignment explanation
Indices: 1352591--1352616 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1352581 TCCTAATCTT
1352591 GAAAAGAATGGA
1 GAAAAGAATGGA
1352603 GAAAAGAATGGA
1 GAAAAGAATGGA
1352615 GA
1 GA
1352617 TTGTTACGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.08
Consensus pattern (12 bp):
GAAAAGAATGGA
Found at i:1353098 original size:317 final size:318
Alignment explanation
Indices: 1352682--1353363 Score: 885
Period size: 317 Copynumber: 2.2 Consensus size: 318
1352672 AAATGATGAA
* * * *
1352682 AAAAAAAGCTTTTCTTGTGTCACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAATGTGTTT
1 AAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTT
* *
1352747 TTGGTTCCCAATCCTAAAACGAATAGAAATTGTTAAT-AGAATCGATACTTATCTTATTTAAGAG
66 TTGGATCCCAATCCTAAAACGAATAGAAATTGTT-ATGAGAATCGATACTTATCCTATTTAAGAG
* * *
1352811 ATAAAGTTTGATATT-AAGTAAAATAGGGCAAAGAAAAGATTTCCATGGAAA-AGAAAATCATCA
130 ATAAACTTTGATATTAAAG-AAAATAGAGCAAAGAAAAGATTACCATGGAAACA-AAAATCATCA
* * * *
1352874 ATATCT-TTTATCCTAATGAGGAGTATGTATTTATAGTGCCTAATCACAAAATGATTGAAGATCA
193 ATAT-TATTTATCCTAATAAGAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
1352938 TTACTAGAATACATGTTTATCACATTTGAGGCATGAACTTAGAGTTTACAAAAATTGGTGGG
257 TTACTAGAATACATATTTATCACATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* *
1353000 AAAAAAAGCCTTTCTTATGACACCAAAGCATCATTGTCATGTATCCTAATGAAGGG-ATATGTTT
1 AAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTT
* * * * * *
1353064 TTGGATCCCAATCTTGAAAA-GAATAGAGATTGTTATGAGAATCGATGCTTGTCCTCTTTAAGGG
66 TTGGATCCCAATCCT-AAAACGAATAGAAATTGTTATGAGAATCGATACTTATCCTATTTAAGAG
* * * * * *
1353128 ATGAACTTTGATTTTAAAGAAAATATAGCAAAGAAAATATTACCATGTAAACAAAAATCTTCAAT
130 ATAAACTTTGATATTAAAGAAAATAGAGCAAAGAAAAGATTACCATGGAAACAAAAATCATCAAT
* *
1353193 ATTATTTATCCTAATAAGAAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTA
195 ATTATTTATCCTAATAAGAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
1353258 CTAGAATCCATATTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
260 CTAGAATACATATTTATCACATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * * * *
1353317 -GAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT-AGTGTATCCTA
1 AAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCA-TGTATCCTA
1353364 TTTAGAAGAC
Statistics
Matches: 315, Mismatches: 43, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
315 1 0.00
316 41 0.13
317 214 0.68
318 59 0.19
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (318 bp):
AAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTT
TTGGATCCCAATCCTAAAACGAATAGAAATTGTTATGAGAATCGATACTTATCCTATTTAAGAGA
TAAACTTTGATATTAAAGAAAATAGAGCAAAGAAAAGATTACCATGGAAACAAAAATCATCAATA
TTATTTATCCTAATAAGAAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
TAGAATACATATTTATCACATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
Found at i:1353454 original size:317 final size:316
Alignment explanation
Indices: 1352703--1353457 Score: 812
Period size: 317 Copynumber: 2.4 Consensus size: 316
1352693 TTCTTGTGTC
* * * * * **
1352703 ACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCT-AAAAC
1 ACCAAAGCACCAATATCATGTATCCTAATGAA-GG-ATATGTTTATGGAGCCCAATCCTGAAAA-
* * * *
1352767 GAATAGAAATTGTTAAT-AGAATCGATA-CTTATCTTATTTAAGAGATAAAGTTTGATATTAAGT
63 GAATAGAGATTGTT-ATGAGAATCGA-AGCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGT
* * * *
1352830 AAAATAGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCTTTTATCCTAATGAGG
126 AAAATAGAGCAAAGAAAAGATTACCATGGAAAAGAAAATCATCAATATCTTTTATCCTAATAAGA
* * *
1352895 AGTATGTATTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATACATGTTTATCA
191 AGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATACATATTTATCA
* * * * *
1352960 CATTTGAGGCATGAACTTAGAGTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTATGAC
256 CATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTACGAA
* * * * * *
1353021 ACCAAAGCATCATTGTCATGTATCCTAATGAAGGGATATGTTTTTGGATCCCAATCTTGAAAAGA
1 ACCAAAGCACCAATATCATGTATCCTAATGAA-GGATATGTTTATGGAGCCCAATCCTGAAAAGA
* * * * *
1353086 ATAGAGATTGTTATGAGAATCGATGCTTGTCCTCTTTAAGGGATGAACTTTGATTTTAAAG-AAA
65 ATAGAGATTGTTATGAGAATCGAAGCTTGTCTTATTTAAGAGATAAACTTTGATTTT-AAGTAAA
* * * *
1353150 ATATAGCAAAGAAAATATTACCATGTAAACA-AAAATCTTCAATAT-TATTTATCCTAATAAGAA
129 ATAGAGCAAAGAAAAGATTACCATGGAAA-AGAAAATCATCAATATCT-TTTATCCTAATAAGAA
* * * * *
1353213 GAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTC
192 GAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATACATATTTATCAC
* *
1353278 ATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-GAAAAAGCCTTTCTTGCGAA
257 ATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTACGAA
* * *
1353337 ACCAAAGCACCAATAT-AGTGTATCCTATTTAGAA-GACTATGTTTATGGAGCCTAATCCTGAAT
1 ACCAAAGCACCAATATCA-TGTATCCTA-AT-GAAGGA-TATGTTTATGGAGCCCAATCCTGAAA
* * * * * *
1353400 AGAATGGGGATTAG-TATGAGTATTC-AAGTTTGTCTTATTTAAGAAACAAACTTTGATT
62 AGAATAGAGATT-GTTATGAG-AATCGAAGCTTGTCTTATTTAAGAGATAAACTTTGATT
1353458 CAACCAAAAA
Statistics
Matches: 368, Mismatches: 57, Indels: 25
0.82 0.13 0.06
Matches are distributed among these distances:
315 1 0.00
316 43 0.12
317 276 0.75
318 48 0.13
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (316 bp):
ACCAAAGCACCAATATCATGTATCCTAATGAAGGATATGTTTATGGAGCCCAATCCTGAAAAGAA
TAGAGATTGTTATGAGAATCGAAGCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGTAAAAT
AGAGCAAAGAAAAGATTACCATGGAAAAGAAAATCATCAATATCTTTTATCCTAATAAGAAGAAT
GTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATACATATTTATCACATTT
AAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTACGAA
Found at i:1354345 original size:474 final size:474
Alignment explanation
Indices: 1351528--1358357 Score: 4989
Period size: 474 Copynumber: 14.3 Consensus size: 474
1351518 AGATCCTAAC
* * * * * *
1351528 AGAGACAAACTTTGATTCT-ATAAAAAACAGTGGAAAGAAAAGCTTTTCGTACAACATCAAAGCA
1 AGAGACAAACTTTGATT-TAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
1351592 TCAATGTCATTTATCTTAATGAAGGGAACGTTTTTTTGGATCCCAATCTTGAAAAGAAAGGAGAT
65 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * * * *
1351657 TGTTACGAGAATCGATACTTCTCCTATTTAAGGGATAAACTTTGATTTTAAAGAAAATATGACAA
130 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGGCAA
* * * ** *
1351722 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCACTAATCTTAACGAGGA-ATATATGTTTA
195 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGA-ATGTGTTTA
* * * * *
1351786 TTGTGCCTAATCCCAAAATGAATGAAGATCATTACTATAATCCACGTTTGTCTCATTTGAGGCCC
259 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * *
1351851 GAACTTAGACTTTACAAAAATTGGTGG-AAAAAAGCCTTTCTTGTGAAGCCAAAGAACCAATATC
324 AAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC
* * * *
1351915 GGGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCTGGAAAAGAATGGGAAATAGTATAA
389 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGG-AATAGTATGA
*
1351980 TTATTCATGTTTGTCTTATTTA
453 GTATTCATGTTTGTCTTATTTA
* * * *
1352002 AGAGACAAACTTTGATTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACGT
1 AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
** *
1352067 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCTTAATCTTGCAAAGAATGGAGATT
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
* * * * * *
1352132 GTTGCGAGAATCAATGCTTGTCTTATTTAAGGGATGATCCTTGA-TTTAGATGAAAATAAGGCAA
131 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAGAAAATATGGCAA
* * * * *
1352196 AGAATATATTTTCATGCAAAAAAAAGATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTT
195 AGAAAAGATTTCCATGC-AAAAAAA-ATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTT
* * * *
1352261 ATAGTGCCTAATCACAAAATGAATGAAAATCATTGCTGGAATCCATGTTTATCTCATTTGAGGCA
258 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
** * **
1352326 GGAACTTAGACTTTGCAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAATA-CAAAGCACCAATA
323 CAAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAA-ACCAAAGCACCAATA
* * * * * * * *
1352390 TCATCTATCCTATTCAGAAGACTATGTTTATGGCGACTAATCTTGAAAAGAATAAGGAATAATAT
387 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATAGTAT
* *
1352455 GTGTTTTCATGTTTGTCTTATTTA
451 GAGTATTCATGTTTGTCTTATTTA
* * * *
1352479 AGAGATAAACTTTGATTTTATCAAAAATGGTGG-GA-AAAAGCTTTTCTTGCGACACCAAAGCAT
1 AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * * ** *
1352542 TAATGCCATGTATCCTAATGAAGAGAATATGTTTCTCAATCCTAATCTTGAAAAGAATGGAGAAA
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATC-T--------T---GAAA
* *** * * * *
1352607 AGAATGGAGATTGTTACGAGAATTGAAATTTGTCTTACTTAAGAGATAAACTTTGA-TTCAATCA
119 AGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--A
* * * * * *** ** * *
1352671 -AAAATGAT-GAAAAAAAAAGCTTTTCTTGTGTCACCAAAGCATCAATGTCATTTATCCTAATGA
182 GAAAAT-ATGGCAAAGAAAAGATTTCCATG-CAAAAAAAATCATCAATATCATTTATCCTAAT-A
* * * * * ** * * **
1352734 AGG-GAATGTGTTTTTGGTTCCCAATC-CTAAAACGAATAGAA-ATTGTTAATAGAATCGATACT
244 AGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAAT-GAAGATCATTACTAGAATCCATGTT
* * * * * * * * * *
1352796 TATCTTATTTAAGAG-ATAAAGTTTGA-TATTA-AGTAAAATAGG-GCAAAGAAAAG-ATTTCCA
307 TGTCTCATTTGAG-GCACAAACTTAGACT-TTACA--AAAATTGGTGGAAA-AAAAGCCTTT-CT
** * * * * * *
1352856 TG-GAAAAGAAAATCATCAATATCTTTTATCCTAATGAG--GAGTATGTATTTATAGTGCCTAAT
366 TGCG-AAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATG--TTTATGGTGCCTAAT
** * * * * * * **
1352918 C-ACAAAATG-ATTGAAGATCATTACT-AGAATACATGTTTATCACATTT-
428 CTTGAAAA-GAATGGGA-AT-AGTA-TGAGTATTCATGTTTGTCTTATTTA
* * * * **
1352965 -GAGGCATGAACTTAGAGTTT-A-CAAAAATTGGTGGGAAA-AAAAGCCTTTCTTATGACACCAA
1 AGAGACA--AACTTTGA-TTTAATCAAAAA-CGGT-GGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
1353026 AGCATCATTGTCATGTATCCTAATGAAGGG-ATATGTTTTTGGATCCCAATCTTGAAAAGAATAG
61 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGG
* * * *
1353090 AGATTGTTATGAGAATCGATGCTTGTCCTCTTTAAGGGATGAACTTTGATTTTAAAGAAAATATA
126 AGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATG
* * * * * *
1353155 GCAAAGAAAATATTACCATGTAAACAAAAATCTTCAATATTATTTATCCTAATAAGAAGAATGTG
191 GCAAAGAAAAGATTTCCATGCAAA-AAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTG
* * *
1353220 TTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTAAG
255 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* **
1353285 GCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAA
320 GCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAA
* * * * * * *
1353350 TATAGTGTATCCTATTTAGAAGACTATGTTTATGGAGCCTAATCCTGAATAGAATGGGGATTAGT
385 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATAGT
*
1353415 ATGAGTATTCAAGTTTGTCTTATTTA
449 ATGAGTATTCATGTTTGTCTTATTTA
* * * * *
1353441 AGAAACAAACTTTGATTCAACCAAAAACGGTGGAAAGAAAAGCTTTTCTCGCGACACCGAAGCAT
1 AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
1353506 CAATGTCATTTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATCGAAATT
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
* * * *
1353571 GTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGTAAAATAGGGCAA
131 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATATGGCAA
* * * *
1353635 AGAAAAGATTTCCATGCAAAAGAAAATTATCAATAGCATTTATCCTAATAAGGAAAATGTCTTTA
195 AGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTA
* * *
1353700 TAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAAACCATGTTTGTCTCATTTGAGGTAC
259 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * * *
1353765 AAACTTAGACTTTATAAAAATTGGGGGAGAAAAAGCATTTCATGCAAAACCAAAGCACTAATATC
324 AAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC
* *
1353830 GTGTATCCTATTCAGGAA-ACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGAATAGTATG
389 GTGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATAGTATG
** *
1353894 AGTATTCATGTTCATTTTATTTA
452 AGTATTCATGTTTGTCTTATTTA
* * * * *
1353917 AGAGACAAACTTTGATTTAATCCAAAACGGTGGAAAGAAAAGCTTTTTTTGCGACCCCAAGGCTT
1 AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
1353982 CAATGTCATGTATCCTATTGAAGGCAATGCGTTTTTCGATCCCAATCTTGGAAAA-AATGGAGAT
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTT-GAAAAGAATGGAGAT
* *
1354046 TGTTGCGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAAGAAAATATGGCAA
130 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGGCAA
*
1354111 AGAAAAGATTTCCATGCAAAAAAAATCATC-ATATCATTTATCCTATTAAGGAGAATGTGTTTAT
195 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
*
1354175 AGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA
260 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA
**
1354240 AACTTAGACTTTACAAAAATTGGTGGCGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCG
325 AACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCG
* * *
1354305 TGTATCCTATTCAAAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGAATAGTATGAG
390 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATAGTATGAG
* * *
1354370 TATTAATGCTTGTCTTATTTG
454 TATTCATGTTTGTCTTATTTA
* * * *
1354391 AGAGA-AAACTTTCATTCTAAT-AAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCT
1 AGAGACAAACTTTGATT-TAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * *
1354454 TCAATGTCATGTATTCTAATGAAAGGAATGTGTTTTTGGATCCCAATCATGAAAAGATTAGAGGT
65 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * * * *
1354519 TGTTACGAAAATCGATCCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAATAA-AGGGCA
130 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAA-AATATGGCA
** *
1354583 AAGAAAAGATTTTTATGCAAAAGAAAATC-TCCAATATCATTTATCCTAA-AATGGAGAATATGT
194 AAGAAAAGATTTCCATGCAAAA-AAAATCAT-CAATATCATTTATCCTAATAA-GGAGAATGTGT
* * * *
1354646 TTATTGTGCCTAATCAGAGAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGG
256 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * * **
1354711 CACAAACTTGGACTTTACAAAAATCGGTGAAAAGAAAAGATCTTTTCTTGCGATACCAAAGCATG
321 CACAAACTTAGACTTTACAAAAATTGGTGGAAA-AAAAG--CCTTTCTTGCGAAACCAAAGCACC
* * * * ** *
1354776 AGTGTCATGTATCCTAATGAAGGAA-A-TGTGTTCCTGGAT-CCCAATCTTGAAAAGAAT-GGAG
383 AATATCGTGTATCCTAATG-A-GAAGACTATGTTTATGG-TGCCTAATCTTGAAAAGAATGGGA-
* * * * *
1354837 ATTGTTAAT-AG-AATCGATAG-TTATCTCAATT-
444 ATAG-T-ATGAGTATTC-AT-GTTTGTCTTATTTA
* * ** * * * * * ** *
1354868 AGGGAATAAACTTTGATTTTAAAGAAAATAC-G-GCAAAGAAAAGATTTTCATGCAAAAGAAAAT
1 AGAG-ACAAACTTTGA-TTTAATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * * * * **
1354931 CATCAATATCGT-TAATCTTAATG-AGAAGTATGTGTTTATAG-TGCCTAATC-ACAAAATGAAT
63 CATCAATGTCATGT-ATCCTAATGAAG-GGAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAAT
** * ** ** * * * * * * *
1354992 AAAAATCATTACTTGAATTC-ATGCGTGTCTCATTTGAGGCACGAA-TTTAGATTTTACA-AAAG
124 GGAGATTGTTACGAGAA-TCGATGCTTGTCTTATTTAAGGGATGAACTTT-GATTTTAAAGAAAA
* * * * ** * * * *** * *
1355054 TTTGTG-AGAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAACATCGGATATCCTACTAAGAAG
187 TATG-GCA-AAGAAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATAAGGAG
* * *** ** * * * *
1355118 ACA-CTGTTTATGGTG-CTAATTTTGAAAA-GAATGGGGAAT-AGTA-TAAGTAT-TATTGTTTA
249 A-ATGTGTTTATAGTGCCTAA-TCACAAAATGAATGAAG-ATCATTACT-AGAATCCA-TGTTTG
* * * * * * ** * *
1355177 CCTTATATAAGAG-ACAAACTTTGA-TTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTAC-A
309 TCTCATTTGAG-GCACAAACTTAGACTT-TACAAAAATTGGTGGAAA-AAAAGCCTTTCTTGCGA
* * * * * * * * *
1355239 ACATCAAAGCATCAATGTCATGTATCTTAATGAAAAGAACGT-TCTTTTTGGAT-CCCAATCTTG
371 A-ACCAAAGCACCAATATCGTGTATCCTAATGAGAAG-AC-TATGTTTATGG-TGCCTAATCTTG
* * * * ** *
1355302 AAAAGAA-AGGAGATTGTTACGAG-AATCGATACTTGTCCTATTTA
432 AAAAGAATGGGA-ATAG-TATGAGTATTC-ATGTTTGTCTTATTTA
** ** * * * * * * **
1355346 A-AGGATGAACTTTGATTTTAAAGAAAATAC-G-GCAAAGAAAAGATTTCCATGCAAAAAAAAAA
1 AGA-GACAAACTTTGA-TTTAATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGC--GACACCAA
* * * * * * * * ** *
1355408 ATCATCAATATCAT-TAATCTTAA-GGAGGAATATGTGTTTATAG-TGCCTAATC-CCAAAATAA
61 AGCATCAATGTCATGT-ATCCTAATGAAGGGA-ATGTGTTTTTGGAT-CCCAATCTTGAAAA-GA
* * * * * * * * * **** * * *
1355469 AAGAAGATCAG-TACTAGAATCCACGTTTGTCTCATTTGAGGCCCAAACTTAGACTTTACA-AAA
122 ATGGAGAT-TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAA
** * * * * *** *
1355532 AT-TGGTGGAA-AAAAGCCTTT-CTTGTGAAGCCAAAAA--ATCAATATCGGGTATCCTAATGAG
186 ATATGG-CAAAGAAAAG-ATTTCCATG-CAA--AAAAAATCATCAATATCATTTATCCTAATAAG
* ** * * * ** * *
1355592 AAGTCTATATTTATGGTGCCTAATCTTGAAAAT-AATGGGAA-AT-AGTA-TA-ATTATTCATGT
246 GAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAAT--GAAGATCATTACTAGA--ATCCATGT
* * * * * * * *
1355652 TTGTCTTATTTAATAG-ACAAACTTTGA-TTCAATCAAAAA-CGGTGGAAAGAATAGCTTTTCTT
306 TTGTCTCATTTGA-GGCACAAACTTAGACTT-TA-CAAAAATTGGTGGAAA-AAAAGCCTTTCTT
* * * * * * * * *
1355714 GCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGAT-CCCAATCT
367 GCGAAACCAAAGCACCAATATCGTGTATCCTAATGAGA-AGACTATGTTTATGG-TGCCTAATCT
* * * * **
1355777 TGCAAAGAAT-GGAGATTGT-TGCGAGAATTGATACTTGTCTTATTTA
430 TGAAAAGAATGGGA-ATAGTAT--GAGTATTCATGTTTGTCTTATTTA
* ** ** * * * * * * * ** *
1355823 AGGGATGAACTTTGATTTTAAGGAAAATA-AGT-CAAAGAATAGATTTTCATGCAAAAAAAAATC
1 AGAGACAAACTTTGA-TTTAATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * * *** *
1355886 ATCAATATTATTTATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAA-CCACAAAATGAATGA
64 ATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGG
* ** * * * * * * * * * * **
1355948 AAATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCAGGAACTTAGACTTTGCA-AAAAT-TG
126 AGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATG
** * * * * * * * * * * * * *
1356011 GTGGAA-AAAAG-TCTTTCTTGCGAATACAAAGCACCAATATCGTCTATCCTATTCAGAAGACTA
191 G-CAAAGAAAAGAT-TTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
* * * * * * * ** * *
1356074 TTTTTATGGTGACTAATCTTCAAAA-GAAT-AGGGAAT-AATA-TGTGTTTTCATGTTTGTCTTA
253 TGTTTATAGTGCCTAATC-ACAAAATGAATGA-AG-ATCATTACT-AGAATCCATGTTTGTCTCA
* * * * * * * * *
1356135 TTTCAGAG-ATAAACTTTGA-TTCA-ATCAAAACTGGGGGAAAAAAAGCTTTTCATACGAAACCA
314 TTTGAG-GCACAAACTTAGACTTTACA--AAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCA
* ** * * * * * * * ** *
1356197 AGGCATTAATGTCATGTATCTTAATGA-AGCGAATGTGTTTCTCAATGCC-AATCTT-AACAAAA
376 AAGCACCAATATCGTGTATCCTAATGAGA-AGACTATGTTTAT-GGTGCCTAATCTTGAA-AAGA
* * * * * *
1356259 AT-GGAGATTGTTACGAGAATTGAAGTTTGTCTTACTTA
438 ATGGGA-ATAG-TATGAGTATTCATGTTTGTCTTATTTA
* * * * *
1356297 AGAGACAAACTTTGATTCAATCAAAAATGATGGAAAGAAAAGCTTTTCTTGTGATACCAAAGCAT
1 AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* ** * * *
1356362 CAATGTCATTTATCCTAATGAATCGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAAATT
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
** * ** * *
1356427 GTTAATAGAATCGATGCTTATCTTATTTAAGAAATAAACTTTGATATT-AAGTAAAATA-GGTCA
131 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATATGG-CA
* * * * * * *
1356490 AAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATGATTTATACTAATGAGGTGTATGTATTT
194 AAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTT
* * * *
1356555 ATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATACATGTTTATCACATTTGAGGCA
258 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
** * * * **
1356620 TGACCTTAGAATTTACAAAAATTGGTTGGAAAAAAAGCCTTTCTTGCGAAACCGAATAACCAATA
323 CAAACTTAGACTTTACAAAAATTGG-TGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATA
* * * *
1356685 TCGTGTATCCAAATGAGATGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGAGAAATAGTAT
387 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG-GGAATAGTAT
*
1356750 GAGTATTCATGTTTGTCTTATGTA
451 GAGTATTCATGTTTGTCTTATTTA
* * * *
1356774 AGAGACAAACTTTGATTCAATCAAAAATGGTGAAAACAAAAGCTTTTCTTGCGACACCAAAGCAT
1 AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* ** *
1356839 CAATGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGATCCTTATCTTAAAAAGAATGGAGATT
66 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
* * * ** * *
1356904 GTTGCAAGAATCGATGCTTGCCTTATTTAAGGGATGAACTCAGATTTTAAAGAAAATACGACAAA
131 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGGCAAA
* * ** *
1356969 GAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTAATCTTAGCAAGGAGAATGTATTTAT
196 GAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
* * * * * * **
1357034 AGTGCTTAATCACAAAATGAATGAGGATCATTACTATAATCCGTATTTGTCTCATTTTAGGCATG
260 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA
* * ** * * * ** * * *
1357099 AACTTATACTTTACTAAAATTGG-GG-GGAAAATCTTTTCTTGTGAAATGAAAGCATCATTATCA
325 AACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCG
* * * *
1357162 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAATAGAATGAGGATTGGTATGAG
390 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG-GGAATAGTATGAG
*
1357227 TATTCATGCTTGTCTTATTTA
454 TATTCATGTTTGTCTTATTTA
* * *
1357248 AGAGACAAACTTTGATTCT-ATAAAAAACGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
1 AGAGACAAACTTTGATT-TAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * *
1357312 TCATTGTCATATATCCTAATGAAAGGAATGTATTTTTTGATCCCAATCTTGAAAAGAATGGAGAC
65 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
* * * * * * * *
1357377 TGTTACGAGAATCAATACCTATCTTATTTAAAGGATGAGCTTTGATTTTAAAGAAAATACGACAA
130 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGGCAA
* * * * * * * * *
1357442 AGAAAAGATTTTCAAGCAAAAAAAATCATCAATACCAATAATCTTAATGAGGAGTACGTGTTTAT
195 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
* * * * *
1357507 AGTGCCTATTCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTTCAGGCACG
260 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA
* * *
1357572 AA-TTAAGA-TTTAAAAAAAATGGTGAGAAAAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
325 AACTT-AGACTTTACAAAAATTGGTG-GAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT
* *
1357635 CGGGTATCTTAATGAG-AGAACTATGTTTATGGT-CCTAATCTTGAAAAGAATGGAGAATAGTAT
388 CGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG-GAATAGTAT
*
1357698 GAGTATT-ATTGTTTGTCTGATTTA
451 GAGTATTCA-TGTTTGTCTTATTTA
* * *
1357722 TGAGACAAACTTTGATTCT-ATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
1 AGAGACAAACTTTGATT-TAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * *
1357786 TCAATGTCATGTATCCTAATGAAGGGAAAGTGTTTTCGGATCTCAATCTTGAAAAGAATGGAGAT
65 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGAT
** * * * * *
1357851 TGTTGTGAGAATTGATGTTTGTCTTATTTAAGGGCTGAACTTTGCTTTTAAAGAAAATACGGCAA
130 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGGCAA
* *
1357916 AGAAAAGATTT-CAAGCAAAAGAAAATCATCAATATCATTTATCCTAAAAAGGAGAATGTGTTTA
195 AGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTA
*
1357980 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAT
259 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * *
1358045 GAACTTAGACTTTTCAAAAATTGG-GAGAAAAAAAGCCTTTCTTGCGAAACCAAAGAACCAATAT
324 AAACTTAGACTTTACAAAAATTGGTG-GAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT
* * *
1358109 CCG-GTATCCTAATGAGAAGACTATATTTATGGTGCATAATCTTGAAAAGAATGAGGAATAGCAT
388 -CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG-GGAATAGTAT
*
1358173 GAGTATGCATGTTTGTCTTATTTGA
451 GAGTATTCATGTTTGTCTTATTT-A
* * *
1358198 A-AGACAAACTTTCATTCT-TTCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-GTAGACCAAAGC
1 AGAGACAAACTTTGATT-TAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG-ACACCAAAGC
* * * * * * * * *
1358260 TTCAATGCCAGGTATCCTAATTAGGGGAATGTGTTTTTAGATCTCAATCTTGGAAAGATTGGAGA
64 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGA
* *
1358325 TTGTTATGAGAATCGATGTTTGTCTTATTTAAG
129 TTGTTACGAGAATCGATGCTTGTCTTATTTAAG
1358358 AGACAAATTG
Statistics
Matches: 5160, Mismatches: 963, Indels: 465
0.78 0.15 0.07
Matches are distributed among these distances:
472 21 0.00
473 299 0.06
474 1315 0.25
475 855 0.17
476 941 0.18
477 792 0.15
478 280 0.05
479 280 0.05
480 20 0.00
481 2 0.00
484 1 0.00
485 15 0.00
486 103 0.02
487 165 0.03
488 24 0.00
489 47 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AGAGACAAACTTTGATTTAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATT
GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGGCAAA
GAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATA
GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAA
ACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGT
GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAATAGTATGAGTA
TTCATGTTTGTCTTATTTA
Found at i:1357751 original size:158 final size:157
Alignment explanation
Indices: 1352986--1361851 Score: 2162
Period size: 159 Copynumber: 56.0 Consensus size: 157
1352976 TTAGAGTTTA
* * ** * * * *
1352986 CAAAAATTGGTGGGAAA-AAAAGCCTTTCTTATGACACCAAAGCATCATTGTCATGTATCCTAAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * * *
1353050 GA-AGGGATATGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTATGAGAATCGATGCTT
65 GAGA-GAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGTTT
* * * ** *
1353114 GTCCTCTTTAAGGGATGAACTTTGATTTTA-
127 GTCTTATTTAAGAGACAAACTTTGATTCTAT
* * ** ** * * * * * * **
1353144 AAGAAAAT-AT-AGCAAAGAAAATATTACCATG-TAAACAAAAATCTTCAATATTATTTATCCTA
1 CA-AAAATGGTGAG-AAAGAAAAGCTTTTCTTGCGAAAC-CAAAGCATCAATATCAGGTATCCTA
* * * * * *
1353206 ATAAGAAGAATGTGTTTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTACT-AGAATCCAT
63 ATGAG-AGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCAT
* * * *
1353269 ATTTGTCTCATTTAAG-GCACGAACTTAGACTT-TA-
123 GTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
** * * *
1353303 CAAAAATTGGTG-GGGA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT-AGTGTATCCTAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTAA
* * * * * * * * *
1353365 TTAGAAGACTATGTTTATGGAGCCTAATCCTGAATAGAATGGGGATTAGTATGAGTATTCAAGTT
64 TGAG-AGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGA-TAGTATGAGAATCCATGTT
* * *
1353430 TGTCTTATTTAAGAAACAAACTTTGATTCAAC
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * **
1353462 CAAAAACGGTG-GAAAGAAAAGCTTTTCTCGCGACACCGAAGCATCAATGTCATTTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * * *
1353526 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATCGAAATTGT-TGCTAGAATCGATGCTT
66 -AGAGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAGTATG--AGAATCCATGTTT
* ** *
1353590 GTCTTATTTAAGGGATGAACTTTGATAT-TAA
127 GTCTTATTTAAGAGACAAACTTTGAT-TCTAT
** * * * * * ** ** * **
1353621 GTAAAATAGG-G-CAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAATAGCATTTATCCTAAT
1 CAAAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * ** * ** *
1353684 AAG-GAAAATGTCTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCCTTACT-AGAAACCATG
65 GAGAGAATATG--TTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATG
* * *
1353746 TTTGTCTCATTTGAG-GTACAAACTTAGACTT-TAT
124 TTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
* * * * *
1353780 -AAAAATTGG-GGGAGA-AAAAGCATTTCATGCAAAACCAAAGCA-CTAATATC-GTGTATCCTA
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC-AATATCAG-GTATCCTA
* * * *
1353840 TTCAG-GAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGG-GAATAGTATGAGTATTCAT
63 ATGAGAG-AA-TATGTTTATGGT-CCTAATCTTGAAAAGAAT-GGAG-ATAGTATGAGAATCCAT
** *
1353903 GTTCATTTTATTTAAGAGACAAACTTTGATT-TAAT
123 GTTTGTCTTATTTAAGAGACAAACTTTGATTCT-AT
* * * ** * * * * *
1353938 CCAAAACGGTG-GAAAGAAAAGCTTTTTTTGCGACCCCAAGGCTTCAATGTCATGTATCCTATTG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
** * * * * * *
1354002 A-AGGCAATGCGTTTTTCGATCCCAATCTTGGAAAA-AATGGAGATTGT-TGCGAGAATCGATGC
66 AGA-G-AATATGTTTAT-GGTCCTAATCTT-GAAAAGAATGGAGATAGTAT--GAGAATCCATGT
** *
1354064 TTGTCTTATTTAAGAGATGAACTTTGATTTTA-
125 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * ** * ** *
1354096 AAGAAAAT-ATG-GCAAAGAAAAGATTTCCATGC-AAAAAAAATCATC-ATATCATTTATCCTAT
1 CA-AAAATGGTGAG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAA
* * * ** * *
1354157 TAAGGAGAATGTGTTTATAGTTCCTAATC-ACAAAATGAATGAAGATCATTACT-AGAATCCATG
64 TGA-GAGAATATGTTTAT-GGTCCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATG
* * *
1354220 TTTGTCTCATTTGAG-GCACAAACTTAGACTT-TA-
124 TTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
** * * *
1354253 CAAAAATTGGTG-GCGA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC-GTGTATCCTAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTAA
* * * * ** *
1354315 TCAAAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGG-GAATAGTATGAGTATTAATGC
64 T-GAGAGAATATGTTTATGGT-CCTAATCTTGAAAAGAAT-GGAG-ATAGTATGAGAATCCATGT
* *
1354379 TTGTCTTATTTGAGAGA-AAACTTTCATTCTAAT
125 TTGTCTTATTTAAGAGACAAACTTTGATTCT-AT
** * * * * * *
1354412 -AAAAACAGTG-GAAAGAAAAGCTTTTCTTACGACACCAAAGCTTCAATGTCATGTATTCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * * * * * * **
1354475 AAAGGAATGTGTTTTTGGATCCCAATCATGAAAAGATTAGAGGTTGTTACGAAAATCGATCCTTG
66 AGA-GAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGTTTG
* * ** * *
1354540 TCTTATTTATGGGATGAACTTTGATTTTAAG
128 TCTTATTTAAGAGACAAACTTTGATTCT-AT
* * * * ** * **
1354571 GAATAAA-GG-G-CAAAGAAAAGATTTT-TATGCAAAAGAAAATC-TCCAATATCATTTATCCTA
1 CAA-AAATGGTGAGAAAGAAAAGCTTTTCT-TGCGAAACCAAAGCAT-CAATATCAGGTATCCT-
* * * * * *
1354631 AAATG-GAGAATATGTTTATTGTGCCTAATC-AGAGAATGAATGAAGATCATTACT-AGAATCCG
62 -AATGAGAGAATATGTTTATGGT-CCTAATCTTGA-AAAGAATGGAGAT-AGTA-TGAGAATCCA
* * *
1354693 TGTTTGTCTCATTTGAG-GCACAAACTTGGACTT-TA-
122 TGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
* * * * *
1354728 CAAAAATCGGTGA-AAAGAAAAGATCTTTTCTTGCGATACCAAAGCATGAGTGTCATGTATCCTA
1 CAAAAAT-GGTGAGAAAGAAAAG--CTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTA
* * * *
1354792 ATGA-AGGAA-ATGTGTTCCTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAAT-AGAATCGA
63 ATGAGA-GAATATGT-TT-ATGG-TCCTAATCTTGAAAAGAATGGAGATAG-T-ATGAGAATCCA
* * * * * *
1354854 TAG-TTATCTCAATT-AGGGAATAAACTTTGATTTTA-
122 T-GTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTAT
* * * * * * ** * * *
1354889 AAGAAAATACG-G-CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC-GTTAATCTTA
1 CA-AAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGT-ATCCTA
* * * ** ** * * * *
1354951 ATGAGAAGTATGTGTTTATAGTGCCTAATC-ACAAAATGAATAAAAATCATTACT-TGAATTCAT
63 ATGAG-AGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCAT
** * * * *
1355014 GCGTGTCTCATTTGAG-GCACGAA-TTTAGATTTTA-
123 GTTTGTCTTATTTAAGAG-ACAAACTTT-GATTCTAT
* * * * *
1355048 CAAAAGTTTGTGAG-AAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAACATC-GGATATCCTAC
1 CAAAA-ATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGG-TATCCTAA
* * * * * * * *
1355111 TAAGAAGACA-CTGTTTATGGTGCTAATTTTGAAAAGAATGGGGAATAGTATAAGTAT-TATTGT
64 TGAG-AGA-ATATGTTTATGGTCCTAATCTTGAAAAGAATGGAG-ATAGTATGAGAATCCA-TGT
** *
1355174 TTACCTTATATAAGAGACAAACTTTGATTCTAT
125 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * * *
1355207 AAAAAACGGTG-GAAAGAAAAGCTTTTCTTAC-AACATCAAAGCATCAATGTCATGTATCTTAAT
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * * * * **
1355270 GAAAAGAACGT-TCTTTTTGGATCCCAATCTTGAAAAGAAAGGAGATTGTTACGAGAATCGATAC
65 G-AGAGAA--TATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGT
* ** *
1355334 TTGTCCTATTTAA-AGGATGAACTTTGATTTTA-
125 TTGTCTTATTTAAGA-GACAAACTTTGATTCTAT
* * * * * * * ** * * *
1355366 AAGAAAATACG-G-CAAAGAAAAGATTTCCATGCAAAAAAAAAAATCATCAATATCA-TTAATCT
1 CA-AAAAT-GGTGAGAAAGAAAAGCTTTTCTTGC--GAAACCAAAGCATCAATATCAGGT-ATCC
* * ** * * *
1355428 TAAGGAG-GAATATGTGTTTATAGTGCCTAATC-CCAAAATAAAAGAAGATCAGTACT-AGAATC
61 TAATGAGAGAATA--TGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATC
* * * * *
1355490 CACGTTTGTCTCATTTGAG-GCCCAAACTTAGACTT-TA-
120 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
* * * ** *
1355527 CAAAAATTGGTG-G-AA-AAAAGCCTTTCTTGTGAAGCCAAAAAATCAATATCGGGTATCCTAAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
** * * * * ** *
1355589 GAGAAGTCTATATTTATGGTGCCTAATCTTGAAAATAATGGGAAATAGTATAATTATTCATGTTT
65 GAG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAAT-GGAGATAGTATGAGAATCCATGTTT
* *
1355654 GTCTTATTTAATAGACAAACTTTGATTCAAT
127 GTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
1355685 CAAAAACGGTG-GAAAGAATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * ** **
1355749 AAGGGAATGTGTTTTTGGATCCCAATCTTGCAAAGAATGGAGATTGT-TGCGAGAATTGATACTT
66 -AGAGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAGTAT--GAGAATCCATGTTT
* ** * *
1355813 GTCTTATTTAAGGGATGAACTTTGATTTTAA
127 GTCTTATTTAAGAGACAAACTTTGATTCTAT
** * * * * * * ** * * **
1355844 GGAAAATAAGT--CAAAGAATAGATTTTCATGCAAAAAAAAATCATCAATATTATTTATCCTAAT
1 CAAAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * *** * *
1355907 GAGGAGAATGTGTTTATAGTGCCTAA-CCACAAAATGAATGAAAATCA-T-TGCTAGAATCCATG
65 GA-GAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTATG--AGAATCCATG
* * * *
1355969 TTTGTCTCATTT--GAGGCAGGAACTTAGACTT-T-G
124 TTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTAT
* *
1356002 CAAAAATTGGTG-G-AA-AAAAG-TCTTTCTTGCGAATA-CAAAGCACCAATATC-GTCTATCCT
1 CAAAAA-TGGTGAGAAAGAAAAGCT-TTTCTTGCGAA-ACCAAAGCATCAATATCAG-GTATCCT
* * * * * * * * ** *
1356061 ATTCAGAAGACTATTTTTATGGTGACTAATCTTCAAAAGAATAGG-GAATAATATGTGTTTTCAT
62 AATGAG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAAT-GGAG-ATAGTATGAGAATCCAT
* * *
1356125 GTTTGTCTTATTTCAGAGATAAACTTTGATTCAAT
123 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * * * * *
1356160 CAAAACTGG-GGGAAA-AAAAGCTTTTCATACGAAACCAAGGCATTAATGTCATGTATCTTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * ** * * * ** *
1356223 AAGCGAATGTGTTTCTCAATGCC-AATCTT-AACAAAAATGGAGATTGTTACGAGAATTGAAGTT
66 -AGAGAATATGTTTAT-GGT-CCTAATCTTGAA-AAGAATGGAGATAG-TATGAGAATCCATGTT
* *
1356286 TGTCTTACTTAAGAGACAAACTTTGATTCAAT
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * **
1356318 CAAAAATGATG-GAAAGAAAAGCTTTTCTTGTGATACCAAAGCATCAATGTCATTTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * *
1356382 A-ATCGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAAATTGTTAAT-AGAATCGATGCT
66 AGA--GAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-T-ATGAGAATCCATGTT
* * * *
1356445 TATCTTATTTAAGAAATAAACTTTGATAT-TAA
126 TGTCTTATTTAAGAGACAAACTTTGAT-TCTAT
** * * * * ** ** * * ** *
1356477 GTAAAATAGGT--CAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATGATTTATACTAAT
1 CAAAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
** * ** * * * *
1356540 GAG-GTGTATGTATTTATAGTGCCTAATC-ACAAAATGATTGAAGATCATTACT-AGAATACATG
65 GAGAGAATATG--TTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATG
* ** * * *
1356602 TTTATCACATTT--GAGGCATGACCTTAGAATT-TA-
124 TTTGTCTTATTTAAGAGACA--AACTTTG-ATTCTAT
* * ** * *
1356635 CAAAAATTGGTTG-GAAA-AAAAGCCTTTCTTGCGAAACCGAATAACCAATATC-GTGTATCCAA
1 CAAAAA-TGG-TGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTA
* * * * *
1356697 ATGAGATGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGAGAAATAGTATGAGTATTCATGT
63 ATGAGA-GAATATGTTTATGGT-CCTAATCTTGAAAAGAATG-GAGATAGTATGAGAATCCATGT
* *
1356762 TTGTCTTATGTAAGAGACAAACTTTGATTCAAT
125 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
1356795 CAAAAATGGTGA-AAACAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * *
1356859 AAGGGAATGTGTTTTTGGATCCTTATCTTAAAAAGAATGGAGATTGT-TGCAAGAATCGATGCTT
66 -AGAGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAGTATG--AGAATCCATGTTT
* * ** ** *
1356923 GCCTTATTTAAGGGATGAACTCAGATTTTA-
127 GTCTTATTTAAGAGACAAACTTTGATTCTAT
* ** * * * * * ** * * *
1356953 AAGAAAAT-ACGACAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCA-TTAATCTTAG
1 CA-AAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGT-ATCCTA-
* * * * * ** * * *
1357016 CAAG-GAGAATGTATTTATAGTGCTTAATC-ACAAAATGAAT-GAGGATCATTACT-ATAATCCG
63 -ATGAGAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGA-GAT-AGTA-TGAGAATCCA
* * *
1357077 TATTTGTCTCATTTTAG-G-CATGAACTTAT-ACTT-TA-
122 TGTTTGTCTTATTTAAGAGACA--AACTT-TGA-TTCTAT
* * * * ** * *
1357112 CTAAAATTGG-G-G--GGAAAATCTTTTCTTGTGAAATGAAAGCATCATTATCATGTATCCTAAT
1 C-AAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * * *
1357173 GAGAAGACTATGTTTATGGTGCCTAATCCTGAATAGAAT-GAGGATTGGTATGAGTATTCATGCT
65 GAG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAATGGA-GA-TAGTATGAGAATCCATGTT
1357237 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * * * **
1357269 AAAAAACGATG-GAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCATTGTCATATATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * ***
1357333 AAAGGAATGTAT-TTTTTGATCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCAATACC
66 AGA-GAA--TATGTTTATGGTCCTAATCTTGAAAAGAATGGAGA-TAG-TATGAGAATCCATGTT
* ** * *
1357396 TATCTTATTTAA-AGGATGAGCTTTGATTTTA-
126 TGTCTTATTTAAGA-GACAAACTTTGATTCTAT
* ** * * ** ** * * * *
1357427 AAGAAAAT-ACGACAAAGAAAAGATTTTCAAGC-AAAAAAAATCATCAATACCA-ATAATCTTAA
1 CA-AAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGT-ATCCTAA
* * * ** * *
1357489 TGAG-GAGTACGTGTTTATAGTGCCTATTC-ACAAAATGAATGAAGATTATTACT-AGAATCCAT
64 TGAGAGAATA--TGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGA-TAGTA-TGAGAATCCAT
* * * *
1357551 GTTTGTCTTATTTCAG-GCACGAA-TTAAGATT-TAA
123 GTTTGTCTTATTTAAGAG-ACAAACTT-TGATTCTAT
* * * *
1357585 AAAAAATGGTGAGAAA-AAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCTTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* *
1357649 AGAGAACTATGTTTATGGTCCTAATCTTGAAAAGAATGGAGAATAGTATGAGTAT-TATTGTTTG
66 AGAGAA-TATGTTTATGGTCCTAATCTTGAAAAGAATGGAG-ATAGTATGAGAATCCA-TGTTTG
* *
1357713 TCTGATTTATGAGACAAACTTTGATTCTAT
128 TCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
1357743 CAAAAATGGT-AGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * **
1357807 AAGGGAA-AGTGTTT-TCGGAT-CTCAATCTTGAAAAGAATGGAGATTGTTGTGAGAATTGATGT
66 -AGAGAATA-TGTTTAT-GG-TCCT-AATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGT
* * * *
1357869 TTGTCTTATTTAAG-GGCTGAACTTTGCTTTTA-
125 TTGTCTTATTTAAGAGAC-AAACTTTGATTCTAT
* * * * ** * ** * **
1357901 AAGAAAATACG-G-CAAAGAAAAG-ATTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAA
1 CA-AAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAA
** * * ** * *
1357963 AAAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACT-AGAATCCATG
64 TGA-GAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATG
* * *
1358026 TTTGTCTCATTT--GAGGCATGAACTTAGACTT-T-T
124 TTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTAT
* * * *
1358059 CAAAAATTGG-GAGAAA-AAAAGCCTTTCTTGCGAAACCAAAGAACCAATATCCGGTATCCTAAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * *
1358122 GAGAAGACTATATTTATGGTGCATAATCTTGAAAAGAAT-GAGGAATAGCATGAGTATGCATGTT
65 GAG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAATGGA-G-ATAGTATGAGAATCCATGTT
* *
1358186 TGTCTTATTTGAA-AGACAAACTTTCATTCTTT
126 TGTCTTATTT-AAGAGACAAACTTTGATTCTAT
* * * **
1358218 CAAAAACGGTG-GAAAGAAAAGCTTTTCTTG-GTAGACCAAAGCTTCAATGCCAGGTATCCTAAT
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCG-AAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * * * * *
1358281 TAGGGGAATGTGTTTTTAGAT-CTCAATCTTGGAAAGATTGGAGATTGTTATGAGAATCGATGTT
65 GA-GAGAATATGTTTAT-GGTCCT-AATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGTT
*
1358345 TGTCTTATTTAAGAGACAAA-TTGTGATTCAAT
126 TGTCTTATTTAAGAGACAAACTT-TGATTCTAT
* * * ** *
1358377 CAAAAATGGTG-GAAAGAAAAGTTTTTCTTGCGACACCAAAG-AGTCAATGTCATTTATCCTAAA
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA-TCAATATCAGGTATCCTAAT
* * * * * * * *
1358440 GAGGGGAATGTGTTTTTAGCTCCCAATCTTGAAAAGAATGGA-AGTTGT-TGCTAGAATCGATGC
65 GA-GAGAATATGTTTAT-GGTCCTAATCTTGAAAAGAATGGAGA-TAGTATG--AGAATCCATGT
* ** *
1358503 TTATCTTATTTAATG-GATGAACTTTGATAT-TAA
125 TTGTCTTATTTAA-GAGACAAACTTTGAT-TCTAT
** * * * * ** * **
1358536 GTAAAATAGG-G-CAAAGAAAAGATTTCCATGCGAAAGAAAATCATCAATATCATTTATCCTAAT
1 CAAAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * ** * * *
1358599 AAGGAGTATGTGTTTATAGTGCCTAATC-ACAAAATGATTGAAGATCATTACT-AGAATCCATGT
65 GA-GAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATGT
* * * * * *
1358662 TTATCTCATTTGAG-GCACGAACTTAGATTTTA-
125 TTGTCTTATTTAAGAG-ACAAACTTTGATTCTAT
* ** * * * * *
1358694 CAAAAATTGGTG-G-GA-AAAAGCCATTCCTGTGAAACCAAAG-TTCCAATATCATGTTTCCTAA
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT-CAATATCAGGTATCCTAA
* * * * * * * *
1358755 TGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAAAATGGGAAATAGTTTGAGTATTCTTATT
64 TGAG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAAT-GGAGATAGTATGAGAATCCATGTT
* ** *
1358820 TGTCTTATGTAAGAGACAAGTTTTGATTCAAT
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
1358852 -AAAAATGGTG-GAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT-TGTGTATCCTAAT
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTAAT
* * * * * * ** * *
1358914 GAAAGGAATGTGTTTTTGGATCCCT-ATCTTAAAAAGATTGGAGATTGTTACAAGAATCGATGCT
65 GAGA-GAATATGTTTATGG-T-CCTAATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGTT
* * ** *
1358978 TGTCTTATTTATGGGATGAAC-TTGATTTTA-
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * ** * * * * **
1359008 AAGAAAATACG-G-CAAAGAAAATATTTCCATGC-AAACGAAAATCATCAATATCATTTATCCTA
1 CA-AAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAAC-CAAAGCATCAATATCAGGTATCCTA
* * * * * *
1359070 ATGAGGAGAATGTGTTTATTGTGCCTAATCTT-AAAATGAATGAATATCAAT-TGTAGAATCTAT
63 ATGA-GAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTATG-AGAATCCAT
* * *** **
1359133 GTTTGTCTCATTTGAG-GTAGGGACTAAGACTT-TAT
123 GTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
* * *
1359168 -AAAAATTGGT-AGAAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT-GGAGTATCCTAA
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTAA
* * * * * * *
1359229 TGAGAAGACTATGTTCACGGTGCTAATCTTGAAAAGAATGTG-GAAGAGTATGAGTAT-TATTGT
64 TGAG-AGAATATGTTTATGGTCCTAATCTTGAAAAGAATG-GAG-ATAGTATGAGAATCCA-TGT
* *
1359292 TTGTCATATTTAAGAGACAAACTTTGATTCTAG
125 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* ** * * * * *
1359325 CAAAAACGGTG-GAAAGAAAAGCTTTTCTTATGACACCAAAGCATCATTGTCATGTATCCTAGTG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * *
1359389 A-AGGGATATGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTATGAGAATCGATGCTTG
66 AGA-GAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGTTTG
* * ** * *
1359453 TCCTATTTAAGGGATGAACTTTGATTTTAA
128 TCTTATTTAAGAGACAAACTTTGATTCTAT
* * ** ** * * * * * * **
1359483 AAAAAAT-ATG-GCAAAGAAAATATTACCATG-TAAACAAAAATCTTCAATATTATTTATCCTAA
1 CAAAAATGGTGAG-AAAGAAAAGCTTTTCTTGCGAAAC-CAAAGCATCAATATCAGGTATCCTAA
* * * * * * *
1359545 TAAGAAGAATGTGTTTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTACT-AGCATCCATG
64 TGAG-AGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATG
* * *
1359608 TTTGTCTCATTT--GAGGCATGAACTTAGACTT-TA-
124 TTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTAT
** * * *
1359641 CAAAAATTGGTG-GGGA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC-GTGTATCCTAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTAA
* * * * * *
1359703 TCAGAAGACTATGTTTATGGAGCCTAATCTTGAAAGGAATAGG-GAATAGTATGAGTATTCATGT
64 TGAG-AGAATATGTTTATGG-TCCTAATCTTGAAAAGAAT-GGAG-ATAGTATGAGAATCCATGT
* *
1359767 TTGTCTTATTTAAGAGACAAACGTTGATTCAAT
125 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * **
1359800 CAAAAACGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCCATGTCCTGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * *
1359864 AAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAAT-GAGATTGT-TGCGAGGATCGATGCTT
66 -AGAGAATATGTTTATGGTCCT-AATCTTGAAAAGAATGGAGATAGTAT--GAGAATCCATGTTT
* * *
1359927 ATCTTATTTAAG-GA-ATGAACTTCGATTTTAAAT
127 GTCTTATTTAAGAGACA--AACTTTGATTCT--AT
* * * * * ** * * **
1359960 -AAAATACGGT---AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAAT
1 CAAAA-ATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * *
1360021 GAGGAGAATGTGTTTATTGTGCCTAATCCT-AAAATGAATGAATATCAAT-TGTAGAATCCATGT
65 GA-GAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTATG-AGAATCCATGT
* * **
1360084 TTGTCTCATTT--GAGGCAAGGACTAAGACTT-TAT
125 TTGTCTTATTTAAGAGACAA--ACTTTGA-TTCTAT
* ** * **
1360117 -AAAAATTGGTG-GAAA-AAAAGCCTTTCTTATGAAACCAAAGCACCAATATGGGGTATCCTAAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * * *
1360179 GAGAAGACTATGTTCACGGTGCTAATCTTGAAAAGAATGTG-GAATAGTATAAGTAT-TATTGTT
65 GAG-AGAATATGTTTATGGTCCTAATCTTGAAAAGAATG-GAG-ATAGTATGAGAATCCA-TGTT
*
1360242 TGTCATATTTAAGAGACAAACTTTGATTCTAT
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* ** ** * * * *
1360274 CCAAAACAGTG-GAAAGAAAAGCTTTTCTTATGACACCAAAGCATCATTGTCATGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * *
1360338 A-AGGGATTTGTTTTTGGATCCCAATCTTGAAAAGAATAGAGATTGTTATGAGAATCGATGCTTG
66 AGA-GAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-TATGAGAATCCATGTTTG
* * * ** *
1360402 TCCTCTTTAAGGGATGAACTTTGATTTTA-
128 TCTTATTTAAGAGACAAACTTTGATTCTAT
* ** ** * * * * * * **
1360431 CAGAAAAT-AT-AGCAAAGAAAATATTACCATG-TAAACAAAAATCTTCAATATTATTTATCCTA
1 CA-AAAATGGTGAG-AAAGAAAAGCTTTTCTTGCGAAAC-CAAAGCATCAATATCAGGTATCCTA
* * * * * * *
1360493 ATAAGAAGAATGTGTTTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTCT-AGAATCCATG
63 ATGAG-AGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTATGAGAATCCATG
* *
1360556 TTTGTCTCATTTAAG-G-CATGAACTTAGACTT-TA-
124 TTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTAT
** * * *
1360589 CAAAAATTGGTG-GGGA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT-AGTGTATCCTAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAG-GTATCCTAA
* * * * * *
1360651 TTAGAAGACTATGTTTATGGAGCCTAATCTTGAAAGGAATAGG-GAATAGTATGAGTATTCATGT
64 TGAG-AGAATATGTTTATGG-TCCTAATCTTGAAAAGAAT-GGAG-ATAGTATGAGAATCCATGT
*
1360715 TTGTCTTATTTAAGAGACAAACTTTGATTCAAT
125 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * *
1360748 CAAAAACGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCCATGTCATGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * ** *
1360812 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGT-TGCGAGGATTGATGCTT
66 -AGAGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAGTAT--GAGAATCCATGTTT
* *
1360876 ATCTTATTTAAG-GA-ATGAACTTTGATTTTA-
127 GTCTTATTTAAGAGACA--AACTTTGATTCTAT
* * * * * * * ** * * * **
1360906 AATAAAATACG-G-CAAAGAAAAGATTTCCGTGCAAAAGAAAATCGTCAATATTATTTATCCTAA
1 CA-AAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAA
* * * ** * * * *
1360969 TGGGGAGAATGTATTTATTATGCCTAATCTT-AAAATGAATGAATATCAAT-TGTAGAATCTATG
64 T-GAGAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTATG-AGAATCCATG
* * **
1361032 TTTGTCTTATTT--GAGGCAGGGACTAAGACTT-TAT
124 TTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTAT
* * *
1361066 -AAAAATTGGTG-GAAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAAT
1 CAAAAA-TGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAAT
* * * * * * *
1361128 GAGAAGACTATGCTTATGGTGCC-AATCTTGGAAAGAATGGGAAATATTATGAGTAT-TATTGTT
65 GAG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAAT-GGAGATAGTATGAGAATCCA-TGTT
* * *
1361191 TGTCTTTATTTGAGAGACCAACTTTGATTGTAT
126 TGTC-TTATTTAAGAGACAAACTTTGATTCTAT
* * ** * * ** **
1361224 CAAAAACGATG-GAAAGACCAGCTTTTCTTGTG-ACCCTAAAGCATCAATGCCTTGTATCCTAAT
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACC-AAAGCATCAATATCAGGTATCCTAAT
* * * * * * * *
1361287 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGATTGT-TGCAAGAATCGATGCT
65 G-AGAGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAGTATG--AGAATCCATGTT
* ** *
1361351 TGTCTTATTTAAGGGATGAACTTTGATTTTA-
126 TGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * ** * * ** ** * * **
1361382 AAGAAAATAGG-G-CAAAGAAAATATTTCCATGTAAAAGAAAATCATCAATATTATTTATCCTAA
1 CA-AAAAT-GGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAA
* * ** ** ** * *
1361445 TGAGGGAATGTGTTTACAGTGCCTAATC-ACAAAATGAATAAAGATCATTACT-AGAATCTATGT
64 TGAGAGAATATGTTTATGGT-CCTAATCTTGAAAA-GAATGGAGAT-AGTA-TGAGAATCCATGT
* * *
1361508 TTGTCTCATTT--GATGCACGAACTTAGACTT-TA-
125 TTGTCTTATTTAAGA-G-ACAAACTTTGA-TTCTAT
* * * * * *
1361540 CAAAAATTGAGGGAAA-AAAA-CCTTTCTTGCGAAACCAAAGAACCAATATCAGGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * ** *
1361603 AGAAGACTATATTTATAGTGCCTAATCTTGAAAAGAATGGGGAATAGTTTGAGTATTAATGTTTA
66 AG-AGAATATGTTTATGGT-CCTAATCTTGAAAAGAATGGAG-ATAGTATGAGAATCCATGTTTG
*
1361668 TCTTATTTAAGAGACAAACTTTGGTTC-AGT
128 TCTTATTTAAGAGACAAACTTTGATTCTA-T
* * * * * *
1361698 CAAAAACGGTGA-AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCATTGTCATGTATCCTAATG
1 CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
* * * * * * * *
1361762 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAATTGTTACT-AGAATCGATGCTT
66 -AGAGAATATGTTTATGG-TCCTAATCTTGAAAAGAATGGAGATAG-TA-TGAGAATCCATGTTT
* **
1361826 GTCTTATTTAAGGGATGAACTTTGAT
127 GTCTTATTTAAGAGACAAACTTTGAT
1361852 ATTGTCACGA
Statistics
Matches: 6248, Mismatches: 1846, Indels: 1227
0.67 0.20 0.13
Matches are distributed among these distances:
154 4 0.00
155 9 0.00
156 190 0.03
157 879 0.14
158 2132 0.34
159 2540 0.41
160 283 0.05
161 168 0.03
162 41 0.01
163 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (157 bp):
CAAAAATGGTGAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCAGGTATCCTAATG
AGAGAATATGTTTATGGTCCTAATCTTGAAAAGAATGGAGATAGTATGAGAATCCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTAT
Found at i:1358924 original size:474 final size:472
Alignment explanation
Indices: 1358341--1361851 Score: 4649
Period size: 474 Copynumber: 7.4 Consensus size: 472
1358331 TGAGAATCGA
* *
1358341 TGTTTGTCTTATTTAAGAGACAAA-TTGTGATTCAATCAAAAATGGTGGAAAGAAAAGTTTTTCT
1 TGTTTGTCTTATTTAAGAGACAAACTT-TGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * *
1358405 TGCGACACCAAAG-AGTCAATGTCATTTATCCTAAAGAGGGGAATGTGTTTTTAGCTCCCAATCT
65 TGCGACACCAAAGCA-TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
* * *
1358469 TGAAAAGAATGGA-AGTTGTTGCTAGAATCGATGCTTATCTTATTTAATGGATGAACTTTGATAT
129 TGAAAAGAATGGAGA-TTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
1358533 TAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCGAAAGAAAATCATCAATATCATTTATCCTAA
193 TAAG-AAAATACGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAA
* * * *
1358598 TAAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATCCATGTT
257 TGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATT-CTAGAATCCATGTT
* * * * * *
1358663 TATCTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGGAAAAAGCCATTCCTGTGAAA
321 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCTTGCGAAA
** * * *
1358728 CCAAAGTTCCAATATCATGTTTCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAAA
386 CCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
* *
1358793 ATGGGAAATAGTTTGAGTATTCT
451 ATGGG-AATAGTATGAGTATTAT
* * ** * *
1358816 TATTTGTCTTATGTAAGAGACAAGTTTTGATTCAAT-AAAAATGGTGGAAAAAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
** * * * *
1358880 GCGACACCAAAGCATCAATGTTGTGTATCCTAATGAAAGGAATGTGTTTTTGGATCCCTATCTTA
66 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * *
1358945 AAAAGATTGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTATGGGATGAAC-TTGATTTTAA
131 AAAAGAATGGAGATTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-A
* *
1359009 AGAAAATACGGCAAAGAAAATATTTCCATGCAAACGAAAATCATCAATATCATTTATCCTAATGA
195 AGAAAATACGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGA
* * * * *
1359074 GGAGAATGTGTTTATTGTGCCTAATCTTAAAATGAATGAATATCAATTGTAGAATCTATGTTTGT
260 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATC-ATTCTAGAATCCATGTTTGT
* * * * * *
1359139 CTCATTTGAGGTAGGGACTAAGACTTTATAAAAATTGGTAGAAAAAAAGCCTTTCTTGCGAAACC
324 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTGCGAAACC
* * *
1359204 AAAGCACCAATAT-GGAGTATCCTAATGAGAAGACTATGTTCACGGTG-CTAATCTTGAAAAGAA
388 AAAGCACCAATATCAG-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
*
1359267 TGTGGAAGAGTATGAGTATTAT
452 TG-GGAATAGTATGAGTATTAT
* * *
1359289 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTAGCAAAAACGGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
** * * * *
1359354 ATGACACCAAAGCATCATTGTCATGTATCCTAGTGAAGGG-ATATGTTTTTGGATCCCAATCTTG
66 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * *
1359418 AAAAGAATAGAGATTGTT-ATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATTTTA
131 AAAAGAATGGAGATTGTTGCT-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-
* * * * *
1359482 AAAAAAATATGGCAAAGAAAATATTACCATGTAAACA-AAAATCTTCAATATTATTTATCCTAAT
194 AAGAAAATACGGCAAAGAAAATATTTCCATGCAAA-AGAAAATCATCAATATTATTTATCCTAAT
* * *
1359546 AAGAAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGCATCCATGTTT
258 GAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATT-CTAGAATCCATGTTT
* *
1359611 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAA
322 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTGCGAAA
* * * *
1359676 CCAAAGCACCAATATC-GTGTATCCTATTCAGAAGACTATGTTTATGGAGCCTAATCTTGAAAGG
386 CCAAAGCACCAATATCAG-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAG
1359740 AATAGGGAATAGTATGAGTATTCA-
450 AAT-GGGAATAGTATGAGTATT-AT
*
1359764 TGTTTGTCTTATTTAAGAGACAAACGTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * * *
1359829 GCGACACCAAAGCTTCCATGTCCTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATCTTG
66 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * * *
1359894 AAAAGAAT-GAGATTGTTGCGAGGATCGATGCTTATCTTATTTAAGGAATGAACTTCGATTTTAA
131 AAAAGAATGGAGATTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-A
* * *
1359958 ATAAAATACGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGA
195 AGAAAATACGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGA
* * * *
1360023 GGAGAATGTGTTTATTGTGCCTAATCCTAAAATGAATGAATATCAATTGTAGAATCCATGTTTGT
260 GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATC-ATTCTAGAATCCATGTTTGT
* * * * **
1360088 CTCATTTGAGGCAAGGACTAAGACTTTATAAAAATTGGTGGAAAAAAAGCCTTTCTTATGAAACC
324 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG-AAAAAAGCCTTTCTTGCGAAACC
** * *
1360153 AAAGCACCAATATGGGGTATCCTAATGAGAAGACTATGTTCACGGTG-CTAATCTTGAAAAGAAT
388 AAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT
*
1360217 GTGGAATAGTATAAGTATTAT
453 G-GGAATAGTATGAGTATTAT
* * * *
1360238 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCCAAAACAGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
** * * *
1360303 ATGACACCAAAGCATCATTGTCATGTATCCTAATGAAGGG-ATTTGTTTTTGGATCCCAATCTTG
66 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * *
1360367 AAAAGAATAGAGATTGTT-ATGAGAATCGATGCTTGTCCTCTTTAAGGGATGAACTTTGATTTTA
131 AAAAGAATGGAGATTGTTGCT-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
** * * *
1360431 CAGAAAATATAGCAAAGAAAATATTACCATGTAAACA-AAAATCTTCAATATTATTTATCCTAAT
195 -AGAAAATACGGCAAAGAAAATATTTCCATGCAAA-AGAAAATCATCAATATTATTTATCCTAAT
* *
1360495 AAGAAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCTAGAATCCATGTTTG
258 GAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCTAGAATCCATGTTTG
* * *
1360560 TCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAAC
323 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTGCGAAAC
* * * *
1360625 CAAAGCACCAATAT-AGTGTATCCTATTTAGAAGACTATGTTTATGGAGCCTAATCTTGAAAGGA
387 CAAAGCACCAATATCAG-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
1360689 ATAGGGAATAGTATGAGTATTCA-
451 AT-GGGAATAGTATGAGTATT-AT
1360712 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* *
1360777 GCGACACCAAAGCTTCCATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
66 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * * *
1360842 AAAAGAATGGAGATTGTTGCGAGGATTGATGCTTATCTTATTTAAGGAATGAACTTTGATTTTAA
131 AAAAGAATGGAGATTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-A
* * * * *
1360907 ATAAAATACGGCAAAGAAAAGATTTCCGTGCAAAAGAAAATCGTCAATATTATTTATCCTAATGG
195 AGAAAATACGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGA
* * * * *
1360972 GGAGAATGTATTTATTA-TGCCTAATCTTAAAATGAATGAATATCAATTGTAGAATCTATGTTTG
260 GGAGAATGTGTTTA-TAGTGCCTAATCATAAAATGAATGAAGATC-ATTCTAGAATCCATGTTTG
* * * * *
1361036 TCTTATTTGAGGCAGGGACTAAGACTTTATAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAAC
323 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG-AAAAAAGCCTTTCTTGCGAAAC
* * *
1361101 CAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGCTTATGGTGCC-AATCTTGGAAAGAA
387 CAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
*
1361165 TGGGAAATATTATGAGTATTAT
452 TGGG-AATAGTATGAGTATTAT
* * ** * **
1361187 TGTTTGTCTTTATTTGAGAGACCAACTTTGATTGTATCAAAAACGATGGAAAGACCAGCTTTTCT
1 TGTTTGTC-TTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
1361252 TGTGAC-CCTAAAGCATCAATGCCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
65 TGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
* *
1361316 TGAAAAGAGTGGAGATTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
129 TGAAAAGAATGGAGATTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
1361381 AAAGAAAATAGGGCAAAGAAAATATTTCCATGTAAAAGAAAATCATCAATATTATTTATCCTAAT
194 -AAGAAAATACGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAAT
* * * *
1361446 GAGG-GAATGTGTTTACAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCTATGTTT
258 GAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATT-CTAGAATCCATGTTT
* *
1361510 GTCTCATTTGATGCACGAACTTAGACTTTACAAAAATTGAG-GGAAAAAAACCTTTCTTGCGAAA
322 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGAAAAAAGCCTTTCTTGCGAAA
* * *
1361574 CCAAAGAACCAATATCAGGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCTTGAAAAGA
386 CCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
* *
1361639 ATGGGGAATAGTTTGAGTATTAA
451 AT-GGGAATAGTATGAGTATTAT
* * * *
1361662 TGTTTATCTTATTTAAGAGACAAACTTTGGTTCAGTCAAAAACGGTGAAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* *
1361727 GTGACACCAAAGCATCATTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
66 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* *
1361792 AAAAGAATGGAAATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
131 AAAAGAATGGAGATTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
1361852 ATTGTCACGA
Statistics
Matches: 2651, Mismatches: 333, Indels: 105
0.86 0.11 0.03
Matches are distributed among these distances:
472 1 0.00
473 425 0.16
474 1103 0.42
475 736 0.28
476 385 0.15
477 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (472 bp):
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
AAAAGAATGGAGATTGTTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
GAAAATACGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAG
GAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTCTAGAATCCATGTTTGTCT
CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCTTGCGAAACCAAA
GCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGG
AATAGTATGAGTATTAT
Found at i:1360086 original size:949 final size:948
Alignment explanation
Indices: 1358341--1361847 Score: 5234
Period size: 949 Copynumber: 3.7 Consensus size: 948
1358331 TGAGAATCGA
* * * *
1358341 TGTTTGTCTTATTTAAGAGACAAA-TTGTGATTCAATCAAAAATGGTGGAAAGAAAAGTTTTTCT
1 TGTTTGTCATATTTAAGAGACAAACTT-TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
** * * * * *
1358405 TGCGACACCAAAG-AGTCAATGTCATTTATCCTAAAGAGGGGAATGTGTTTTTAGCTCCCAATCT
65 TATGACACCAAAGCA-TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCT
* * * * * *
1358469 TGAAAAGAATGGA-AGTTGTTGCT-AGAATCGATGCTTATCTTATTTAATGGATGAACTTTGATA
129 TGAAAAGAATAGAGA-TTGTT-ATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATT
* * * * *
1358532 TT-AAGTAAAATAGGGCAAAGAAAAGATTTCCATGCGAAAGAAAATCATCAATATCATTTATCCT
192 TTAAAG-AAAATAGGGCAAAGAAAATATTACCATG-TAAAAAAAATCATCAATATTATTTATCCT
* * *
1358596 AATAAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATCCATG
255 AATAAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
1358661 TTTATCTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGT-GGGAAAAAGCCATTCCTGTG
320 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCG
** * * *
1358725 AAACCAAAGTTCCAATATCATGTTTCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
385 AAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCTTGAAA
* * * * * **
1358790 AAAAT-GGGAAATAGTTTGAGTATTCTTATTTGTCTTATGTAAGAGACAAGTTTTGATTCAAT-A
450 AGAATAGGG-AATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCA
* * * ** *
1358853 AAAATGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTGTGTATCCTAATGAAA
514 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCCATGTCATGTATCCTAATGAAG
* * * * * *
1358918 GGAATGTGTTTTTGGATCCCTATCTTAAAAAGATTGGAGATTGTTACAAGAATCGATGCTTGTCT
579 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCT
* * * * *
1358983 TATTTATGGGATGAACTTGATTTTAAAGAAAATACGGCAAAGAAAATATTTCCATGCAAACGAAA
644 TATTTAAGGAATGAACTTGATTTTAAATAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
1359048 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCTTAAAATGAATGA
709 ATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCTTAAAATGAATGA
*
1359113 ATATCAATTGTAGAATCTATGTTTGTCTCATTTGAGGTAGGGACTAAGACTTTATAAAAATTGGT
774 ATATCAATTGTAGAATCTATGTTTGTCTCATTTGAGGCAGGGACTAAGACTTTATAAAAATTGGT
*
1359178 AGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATGGAGTATCCTAATGAGAAGACTATGT
839 GGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATGG-GTATCCTAATGAGAAGACTATGT
*
1359243 TCACGGTGCTAATCTTGAAAAGAATGTGGAAGAGTATGAGTATTAT
903 TCACGGTGCTAATCTTGAAAAGAATGTGGAATAGTATGAGTATTAT
*
1359289 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTAGCAAAAACGGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * *
1359354 ATGACACCAAAGCATCATTGTCATGTATCCTAGTGAAGGG-ATATGTTTTTGGATCCCAATCTTG
66 ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTG
1359418 AAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATTTTAA
131 AAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATTTTAA
* * *
1359483 AAAAAATATGGCAAAGAAAATATTACCATGTAAACAAAAATCTTCAATATTATTTATCCTAATAA
196 AGAAAATAGGGCAAAGAAAATATTACCATGTAAA-AAAAATCATCAATATTATTTATCCTAATAA
* *
1359548 GAAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGCATCCATGTTTGT
260 GAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
*
1359613 CTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACC
325 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACC
* * *
1359678 AAAGCACCAATATCGTGTATCCTATTCAGAAGACTATGTTTATGGAGCCTAATCTTGAAAGGAAT
390 AAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCTTGAAAAGAAT
*
1359743 AGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCAATCAAAAACG
455 AGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACG
* *
1359808 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCCATGTCCTGTATCCTAATGAAGGGAATG
520 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCCATGTCATGTATCCTAATGAAGGGAATG
* * *
1359873 TGTTTTTGGTTCTCAATCTTGAAAAGAAT-GAGATTGTTGCGAGGATCGATGCTTATCTTATTTA
585 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCTTATTTA
*
1359937 AGGAATGAACTTCGATTTTAAATAAAATACGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
650 AGGAATGAACTT-GATTTTAAATAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
*
1360002 CAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCCTAAAATGAATGAATATC
714 CAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCTTAAAATGAATGAATATC
* *
1360067 AATTGTAGAATCCATGTTTGTCTCATTTGAGGCAAGGACTAAGACTTTATAAAAATTGGTGGAAA
779 AATTGTAGAATCTATGTTTGTCTCATTTGAGGCAGGGACTAAGACTTTATAAAAATTGGTGGAAA
**
1360132 AAAAGCCTTTCTTATGAAACCAAAGCACCAATATGGGGTATCCTAATGAGAAGACTATGTTCACG
844 AAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT-GGGTATCCTAATGAGAAGACTATGTTCACG
*
1360197 GTGCTAATCTTGAAAAGAATGTGGAATAGTATAAGTATTAT
908 GTGCTAATCTTGAAAAGAATGTGGAATAGTATGAGTATTAT
* *
1360238 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCCAAAACAGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* *
1360303 ATGACACCAAAGCATCATTGTCATGTATCCTAATGAAGGG-ATTTGTTTTTGGATCCCAATCTTG
66 ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTG
* *
1360367 AAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCCTCTTTAAGGGATGAACTTTGATTTTAC
131 AAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATTTTAA
** *
1360432 AGAAAATATAGCAAAGAAAATATTACCATGTAAACAAAAATCTTCAATATTATTTATCCTAATAA
196 AGAAAATAGGGCAAAGAAAATATTACCATGTAAA-AAAAATCATCAATATTATTTATCCTAATAA
*
1360497 GAAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATT-CTAGAATCCATGTTTGT
260 GAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* *
1360561 CTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACC
325 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACC
* * * *
1360626 AAAGCACCAATATAGTGTATCCTATTTAGAAGACTATGTTTATGGAGCCTAATCTTGAAAGGAAT
390 AAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCTTGAAAAGAAT
1360691 AGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACG
455 AGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACG
*
1360756 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCCATGTCATGTATCCTAATGAAGGGAATG
520 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCCATGTCATGTATCCTAATGAAGGGAATG
* * *
1360821 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGGATTGATGCTTATCTTATTTA
585 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCTTATTTA
* *
1360886 AGGAATGAACTTTGATTTTAAATAAAATACGGCAAAGAAAAGATTTCCGTGCAAAAGAAAATCGT
650 AGGAATGAAC-TTGATTTTAAATAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
1360951 CAATATTATTTATCCTAATGGGGAGAATGTATTTATTATGCCTAATCTTAAAATGAATGAATATC
714 CAATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCTTAAAATGAATGAATATC
*
1361016 AATTGTAGAATCTATGTTTGTCTTATTTGAGGCAGGGACTAAGACTTTATAAAAATTGGTGGAAA
779 AATTGTAGAATCTATGTTTGTCTCATTTGAGGCAGGGACTAAGACTTTATAAAAATTGGTGGAAA
*
1361081 AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGCTT-AT
844 AAAAGCCTTTCTTGCGAAACCAAAGCACCAATAT-GGGTATCCTAATGAGAAGACTATG-TTCAC
* * *
1361145 GGTGCCAATCTTGGAAAGAATG-GGAAATATTATGAGTATTAT
907 GGTGCTAATCTTGAAAAGAATGTGG-AATAGTATGAGTATTAT
* * * * * **
1361187 TGTTTGTCTTTATTTGAGAGACCAACTTTGATTGTATCAAAAACGATGGAAAGACCAGCTTTTCT
1 TGTTTGTC-ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
1361252 TGTGAC-CCTAAAGCATCAATGCCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
65 TATGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCT
* * *** *
1361316 TGAAAAGAGTGGAGATTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
129 TGAAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATTTT
*
1361381 AAAGAAAATAGGGCAAAGAAAATATTTCCATGTAAAAGAAAATCATCAATATTATTTATCCTAAT
194 AAAGAAAATAGGGCAAAGAAAATATTACCATGTAAAA-AAAATCATCAATATTATTTATCCTAAT
* * * * *
1361446 GAG-GGAATGTGTTTACAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCTATGTTT
258 AAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
1361510 GTCTCATTTGATGCACGAACTTAGACTTTACAAAAATT-GAGGGAAAAAAACCTTTCTTGCGAAA
323 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAA
* * * *
1361574 CCAAAGAACCAATATCAG-GTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCTTGAAAAG
388 CCAAAGCACCAATATC-GTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCTTGAAAAG
* * * * * *
1361638 AATGGGGAATAGTTTGAGTATTAATGTTTATCTTATTTAAGAGACAAACTTTGGTTCAGTCAAAA
452 AATAGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAA
* *
1361703 ACGGTGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT-CATTGTCATGTATCCTAATGAAGGG
517 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCCA-TGTCATGTATCCTAATGAAGGG
* * *
1361767 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAATTGTTACTAGAATCGATGCTTGTCTTA
581 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCTTA
*
1361832 TTTAAGGGATGAACTT
646 TTTAAGGAATGAACTT
1361848 TGATATTGTC
Statistics
Matches: 2351, Mismatches: 186, Indels: 43
0.91 0.07 0.02
Matches are distributed among these distances:
946 4 0.00
947 222 0.09
948 557 0.24
949 985 0.42
950 395 0.17
951 188 0.08
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (948 bp):
TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTG
AAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCCTATTTAAGGGATGAACTTTGATTTTAA
AGAAAATAGGGCAAAGAAAATATTACCATGTAAAAAAAATCATCAATATTATTTATCCTAATAAG
AAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCA
AAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCTTGAAAAGAATA
GGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGG
TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCCATGTCATGTATCCTAATGAAGGGAATGT
GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTATCTTATTTAA
GGAATGAACTTGATTTTAAATAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
ATATTATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCTTAAAATGAATGAATATCAA
TTGTAGAATCTATGTTTGTCTCATTTGAGGCAGGGACTAAGACTTTATAAAAATTGGTGGAAAAA
AAGCCTTTCTTGCGAAACCAAAGCACCAATATGGGTATCCTAATGAGAAGACTATGTTCACGGTG
CTAATCTTGAAAAGAATGTGGAATAGTATGAGTATTAT
Found at i:1362885 original size:97 final size:97
Alignment explanation
Indices: 1362755--1362985 Score: 340
Period size: 97 Copynumber: 2.4 Consensus size: 97
1362745 TTGAAAAATG
** * *
1362755 GGGTTGGAGTATCCTTTTTGAGGAATGGGGTTGGAGTGTCCCTAATAATAACAATTTAAGTGAGA
1 GGGTTGGAGTATCCCCTTTGAGGAATGGGGTTGGAGTGCCCCCAATAATAACAATTTAAGTGAGA
1362820 ATAAGATTTAAACTTTGATGTGTTTAAAAGC-
66 ATAAGATTTAAACTTTGATGTGTTTAAAAGCA
* * *
1362851 GAGGTTGGAGTATCCCCTTTGAGGAATGGGGTTGGAGTGCCCCCGATGATGACAATTTAAGTGAG
1 G-GGTTGGAGTATCCCCTTTGAGGAATGGGGTTGGAGTGCCCCCAATAATAACAATTTAAGTGAG
1362916 AATAAGATTTAAACTTTGATGTGTTTAAAAGCA
65 AATAAGATTTAAACTTTGATGTGTTTAAAAGCA
* * *
1362949 GGGTTGGAGTAT-CCCTTCGGAGGAATAGGGTTAGAGT
1 GGGTTGGAGTATCCCCTT-TGAGGAATGGGGTTGGAGT
1362986 ATCCTCGATA
Statistics
Matches: 122, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
96 6 0.05
97 115 0.94
98 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.31
Consensus pattern (97 bp):
GGGTTGGAGTATCCCCTTTGAGGAATGGGGTTGGAGTGCCCCCAATAATAACAATTTAAGTGAGA
ATAAGATTTAAACTTTGATGTGTTTAAAAGCA
Found at i:1364711 original size:13 final size:12
Alignment explanation
Indices: 1364690--1364746 Score: 60
Period size: 14 Copynumber: 4.3 Consensus size: 12
1364680 TTTGTTTCTA
1364690 TTTTTTCTCGTTT
1 TTTTTTCTC-TTT
*
1364703 TTATTTCTCCCTTT
1 TT-TTT-TCTCTTT
1364717 TTTTTCTCTCTTTT
1 TTTTT-TCTC-TTT
1364731 TTTTTTCTCTTT
1 TTTTTTCTCTTT
1364743 TTTT
1 TTTT
1364747 AGTTGAACCT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
12 7 0.18
13 13 0.33
14 16 0.41
15 3 0.08
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTTCTCTTT
Found at i:1364745 original size:15 final size:15
Alignment explanation
Indices: 1364714--1364746 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
1364704 TATTTCTCCC
1364714 TTTTTTTTCTCTCTT
1 TTTTTTTTCTCTCTT
1364729 TTTTTTTTCTCT-TT
1 TTTTTTTTCTCTCTT
1364743 TTTT
1 TTTT
1364747 AGTTGAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTTCTCTCTT
Found at i:1368100 original size:159 final size:156
Alignment explanation
Indices: 1367523--1373894 Score: 1728
Period size: 159 Copynumber: 40.1 Consensus size: 156
1367513 CATTGAGTAT
* * * * *
1367523 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGATGGAAGGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * * * * * * * *
1367588 CCTACGACACTAAAGCATCAATTTCATGTACCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAAT
66 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--AATATGTTTATGGTGCCTAAT
** *
1367652 CTCAAAAAGAATGGAGACT-GT-TGCAAGAA
129 CTTGAAAAGAATGG-GATTAGTATG--AGAA
* * * * * * *
1367681 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGACTT-TA-AAGAAAATAGG-GCAAGGAAAAGA
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTCTATCA-AAAAT-GGTGGAAAGAAAAGC
* * ** * * * *
1367743 TTTTCATGCAAAAGAAAATCATCAATATCATCTATCCTAATGAGGAAAATGTGTTTATAGTGCCT
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGGTGCCT
** * *
1367808 AATC-ACAAAATGAATGAAGATTATTACT-AGAA
126 AATCTTGAAAA-GAATG-GGATTAGTA-TGAGAA
* * * * * * * **
1367840 TCCATATTTATCTCATTTGAG-GCATGAAC-ATGAAATCT-TCAAAAATTGGTGGGGA-AAAAGC
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACTTTG-ATTCTATCAAAAA-TGGTGGAAAGAAAAGC
* *
1367901 TTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCT
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAAA-TATGTTTATGGTGCCT
1367966 AATCTTGAAAAGAATAGGGATTAGTATGAGTAA
126 AATCTTGAAAAGAAT-GGGATTAGTATGAG-AA
*
1367999 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* ** * * *
1368064 CTTGCGACACCAAAGCATCAATATCGGGTATGCTAATGAGAAGACTAT-TCTAATGGTGCC-AAT
66 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGT-TTATGGTGCCTAAT
* * * * *
1368127 CTTCAAAAGAATGGGAAATATTATAAGTA
129 CTTGAAAAGAATGGG-ATTAGTATGAGAA
* * * * * *
1368156 TTATTTTTTTTTTATTTAAGAGATAAACTTTGATTCTATCTAAAATGATGGAAAGAACAA-CTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAA-AAGCTTT
* ** ** * * * *
1368220 TTTTGCGACCCCAAAGCATCAATGCCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAA
65 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--AATATGTTTATGGTGCCTAA
1368284 TCTTGAAAAGAATGGCGATT-GT-TGCGAGAA
128 TCTTGAAAAGAATGG-GATTAGTAT--GAGAA
* * * * * ** * *
1368314 TCGATGCTTGTCTTATTTAAGGGATGAACTTT-TTTTTAAGAAAAATAGG-GCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
* * ** * ** * ** * *
1368377 TCCATGCGAAAGAAAATCATCAATATTGTTTATCCTAATGAAGGGAATGTGTTTATAGT-CCTTA
64 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTATGGTGCC-TA
** * ** * *
1368441 ATC-ACAAAATAATAAAGATCATTACT-AGAA
127 ATCTTGAAAAGAAT-GGGATTAGTA-TGAGAA
* * * * * *
1368471 TCCATGTTTGTCTCATTTGAG-GCACAAACTTAGA-CCT-TACAAAATTTGAG-GGAAA-AAAAG
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACTTTGATTCTAT-CAAAA-ATG-GTGGAAAGAAAAG
* * * * * *
1368531 -TCTTTCTTGTGAAACCAAA-AAACTAATATCGA-GTATCCTAATAAGAAGCCTATATTATTTAT
61 CT-TTTCTTGCGAAACCAAAGCATC-AATATC-ATGTATCCTAATGAGAA---AATA-TGTTTAT
* *
1368593 GGTGCCTAATCTTGAAAAGAATGGGCAATAGTATGAGTAT
119 GGTGCCTAATCTTGAAAAGAATGGG-ATTAGTATGAG-AA
* * * * *
1368633 TAATGTTTGTCTTATTTTAGAGACAAACTTTGGTTC-AGTCAAAAACGGTGGAAAGAAAAGCTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTA-TCAAAAATGGTGGAAAGAAAAGCTTT
* * * * * * * ** *
1368697 TCCTGTGACACCAAAGTATCAATGTCAAGTA-CCTAATAAAGGGAATATGTTTTTGGAT-CCTAA
65 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-GAGAAAATATGTTTATGG-TGCCTAA
* *
1368760 TCCTGAAAACAATGGAGATT-GT-TGCGAGAA
128 TCTTGAAAAGAATGG-GATTAGTAT--GAGAA
* * * * ** * * *
1368790 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAAG-AT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
* * ** * * * * *
1368853 TTCTATGCAGATGA--AAATCATCAATATTTTTTATCCTAATGAGAGGAATGTGTTTATAGTGTC
64 TTCT-TGC-GA-AACCAAAGCATCAATATCATGTATCCTAATGAGA-AAATATGTTTATGGTGCC
*** * * *
1368916 TAATCACAAAAAGAATGAAGATCACTACT-AGAA
125 TAATCTTGAAAAGAATG-GGATTAGTA-TGAGAA
* * * * * * * *
1368949 CCCATGTTTGTCTCATTTGAG-GCATGAACTTGGACTCAAT-AAAAATTGGTGGAAA-AAAAGCC
1 -TCATGTTTGTCTTATTTAAGAG-ATAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCT
* ** * * * ** *
1369011 TTTCTTGCAAAACCAAAGCGCCAATATCAGGTATCCTACTAAGAAGCCTATATTTATGGTGCCTA
63 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCCTA
* * *
1369076 ATCTTGAAAAGAATGGGCAATAGTATAAGTAT
127 ATCTTGAAAAGAATGGG-ATTAGTATGAG-AA
* * * * * * *** *
1369108 TCATGTCTATCTTATTTAAGAGACAAGCTTTTATTCAATCAAAAACAATGGAACGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
** * * * * ** ** * *
1369173 CTTGCGACGCTAAAGTATCAATGTCATGCATCCTAATGAAGGGAACGTGTTTTTGGATCCCT-AT
66 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTATGG-TGCCTAAT
* * * *
1369237 CTTTAAAAGATTGGAGGTT-GTTACGAGAA
129 CTTGAAAAGAATGG-GATTAG-TATGAGAA
* * * * * ** *
1369266 TCGATGCTTGTCATATTTAAGGGATAAACTTTGATT-T-TAAAGAAAAGACGGCAAAGAAAAG-A
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAA-AAATGGTGG-AAAGAAAAGCT
* ** ** * ** * *
1369328 TTTCTATGC-AAA-AAAAATATCAATATCAT-TAATAATAGTGAGGAGGATGTATTTATGGTGCC
63 TTTCT-TGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGA-GAAAATATGTTTATGGTGCC
** * * *
1369390 TAATC-ACAAAATGAATGAAGATCATTACT-AGAA
125 TAATCTTGAAAA-GAATG-GGATTAGTA-TGAGAA
* * * * * * * *
1369423 TCCATATTTATCTCATTTGAG-GCATGAACATAGACTT-TA-CAAAAATTGGTGAGGAA-AAAA-
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAGAAAAG
* * * *
1369483 CTTTTCTTGCGAGACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTATGTTTATGGTGCC
61 CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCC
* *
1369548 TAATCCTGAAAAAGAATGGGGATTAGTATGAGTAT
125 TAATCTTG-AAAAGAAT-GGGATTAGTATGAG-AA
** * * *
1369583 TCATGTTTGTCTTATTTGGGAGACAAACTTTGATTCTATCAAAAATGGTGAAAAAAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * ** * * *
1369648 CTTAC-AACACCAAAGTATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGAT-CCCAA
66 CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTATGG-TGCCTAA
* *
1369711 TCTTAAAAACAATGGAGATT-GT-TGCGAGAA
128 TCTTGAAAAGAATGG-GATTAGTAT--GAGAA
* * * * *** * * * *
1369741 TCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAATAAAAGATT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
* * ** ** * ** * *
1369805 TCCATGC-ACAAAAAAATG-ATCAATATTTTTTATCCTAATGAGAAGAACGTATTTATAGT--CT
64 TTCTTGCGA-AACCAAA-GCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCCT
*** * * *
1369866 AATCACAAAAAGAATGAAGATCACTACT-AGAA
126 AATCTTGAAAAGAATG-GGATTAGTA-TGAGAA
* * * * * * * * * *
1369898 CCCCTGTTTGTCTCATTTGAAGCG-TGAACTTAGACTCTA-CAAAAGTTGGT-GAAAAAAAAGCC
1 -TCATGTTTGTCTTATTT-AAGAGATAAACTTTGATTCTATCAAAA-ATGGTGGAAAGAAAAGCT
** * * * ** * *
1369960 TTTCTTATGAAACCAAAGCACCAATATCAGGTATCCTACTGAGAAGCCTCTATTTATGGTGCCTA
63 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCCTA
* * *
1370025 ATCTTG-AAAGAATGGGCAATAGTATAAGTAT
127 ATCTTGAAAAGAATGGG-ATTAGTATGAG-AA
* * * *
1370056 TCATGTGTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAATGGTGGAAAGAAAAGCATTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* ** * * ** * * * *
1370121 CTTGTGACGCCAAAGTATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGTTTCCTAATC
66 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTATGGTGCCTAATC
** *
1370186 TTGAAAAAGAACAT-AAACT-GTTACT-AGAA
130 TTG-AAAAG-A-ATGGGATTAG-TA-TGAGAA
* * * * * * *** * *
1370215 TCGATGCTTGTGTTATTTATGGGATGAACTTTGAGAT-TAAGTAAAAT-ATGGCAAAGAAAAGAT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTCTATCAAAAATGGTGG-AAAGAAAAGCT
** * ** * * * ** **
1370278 TTTGGATGCAAAAGAAAATCATAAATATCA-GTTATCCTAATTAGGAAAATGCGTTTACAGTGCC
63 TTT-CTTGCGAAACCAAAGCATCAATATCATG-TATCCTAATGA-GAAAATATGTTTATGGTGCC
** * * *
1370342 TAATC-ACAAAATGAATGAAGATCATTACT-AGAA
125 TAATCTTGAAAA-GAATG-GGATTAGTA-TGAGAA
* * * ** * *
1370375 TCAAGGTTTATCTCATTT--GATGCACGAACTTAGACTT-TAT-AAAAATTGGTGGAAA-AAAGG
1 TC-ATGTTTGTCTTATTTAAGA-G-ATAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG
* * * * * * *
1370435 C-TTTCTTACAAAACCAAAGCACCAATAAT-AGGTATCCTAACGAGAAGACTATTTTTATGGTGC
61 CTTTTCTTGCGAAACCAAAGCATCAAT-ATCATGTATCCTAATGAGAA-AATATGTTTATGGTGC
* * * *
1370498 CTAATCCTGAAAAGAATGAGGATTTGTATGACTAT
124 CTAATCTTGAAAAGAATG-GGATTAGTATGA-GAA
* * *
1370533 TCATGTCTGTCTTATTTAAGAGAGAAACTTTGATT-TCATCAAAAACGGTGGAAAGAAAAGCTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTT
* * * * ** * * *
1370597 TCTTACGACACCACAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTTCC-AA
65 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTATGG-TGCCTAA
*
1370661 TCTTGAAAAGAGTGGAGATT-GT-TGCGAGAA
128 TCTTGAAAAGAATGG-GATTAGTAT--GAGAA
* * * * *** * * * *
1370691 TCGATGCTTGTCTTATTTAAGGGATGAACATTGACTT-TAAGGAAAGTAGG-GCAAAAAAAAAGA
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTCTATCAAAAAT-GGTG-GAAAGAAAAGC
* ** ** * * * * *
1370754 TTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTGCCT
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGGTGCCT
** ** *
1370819 AATC-ACAAAATGAATGAAAATTATTACT-AGAA
126 AATCTTGAAAA-GAATG-GGATTAGTA-TGAGAA
* * ** * *
1370851 TCTATATTTGTCTCATTCGAG-GCATGAACTTAGACTTC-A-CAAAAATTGGTGGCAAA-AAAA-
1 TC-ATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-TTCTATCAAAAA-TGGTGG-AAAGAAAAG
* ** * * *
1370911 CCTTTCTTGCGAAACCAAAGCA-CAAATATCGGGAATCTTAATGAGAAGACTATGTTTATGGTGC
61 CTTTTCTTGCGAAACCAAAGCATC-AATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGC
* *
1370975 CTAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
124 CTAATCTTGAAAAGAAT-GGGATTAGTATGAG-AA
* * * * *
1371010 TTATTTTTCTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * * * * * * * *
1371075 CCTACGACACCAAAGCACCAATTTCAAGTATCCTAATCA-AAGGAATGTGTTTTTGGAT-CCCAA
66 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--AATATGTTTATGG-TGCCTAA
* * * *
1371138 TCGTGAAAAGAATAGAGATTATTGTGAGAA
128 TCTTGAAAAGAAT-GGGATTAGTATGAGAA
* * * *** * * **
1371168 TCGATGCTTGTCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATAAGT-CAAAGAAAATATT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
* *** * * ** * * *
1371232 TTCATGC-ATAGGAAAATCATCAAAATTTTTTATCCTAATGAGGAGAATATGTTTATAGTGCCTA
64 TTCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGGTGCCTA
** * * * * * *
1371296 ATC-ACAAAATAAATGAAGCTCATTACT-AAAA
127 ATCTTGAAAA-GAATG-GGATTAGTA-TGAGAA
* ** * * * *
1371327 TCCATGTTTGTCTCATTTGCG-GCACAAACTTAGACTCTA-CAAAAATTGGAGGAAA-AAAAGCC
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAG-C
* * ** * ** *
1371389 TTTT-TTACGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGCACCC
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCCT
* * **
1371453 AATTTTGAAAATAATGGGGATT-GCTGCGAGAA
126 AATCTTGAAAAGAAT-GGGATTAG-TATGAGAA
** * * *** * *
1371485 TCATTGCCTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATT
1 TCA-TGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
* * ** * ** * * * * *
1371549 TCCATGC-ACAAGAAAATCATCAATATTTTTTATCCTAATGAGGACAATGTGTTTATAGTGTCTA
64 TTCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGGTGCCTA
*** * * *
1371613 ATCACAAAAAGAATGAAGATCACTACT-AGAA
127 ATCTTGAAAAGAATG-GGATTAGTA-TGAGAA
* * * * * * * *
1371644 CCCATGTTTGTCTCATTTGAAG-CATGAACTTAGACTCTA-CAAAAATTAGTGGAAA-AAAAGCC
1 -TCATGTTTGTCTTATTT-AAGAGATAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCT
* * *
1371706 TTTCTTGCGAAACCAAAGCACCAATATC-TGGTATCCTAATGACAAAACTATTTTTATGGTGCCT
63 TTTCTTGCGAAACCAAAGCATCAATATCAT-GTATCCTAATGAGAAAA-TATGTTTATGGTGCCT
** * *
1371770 AATCCAGAAAATAATGGGGATTAGCATGAGAA
126 AATCTTGAAAAGAAT-GGGATTAGTATGAGAA
* * * * * ** *
1371802 TTCAAGTTTCTCTTATTTATGAGACAAACTTTGATTTTATCAAAAAAT-GAAGAAATAAAAGCTT
1 -TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTT
* * * * * * *
1371866 TTCTTGCGACACCAAACCATCAATATCATGTATCCTAATGATGAGAATGTATTTTTGGAT-CCCA
64 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGG-TGCCTA
* *
1371930 ATCTTGAAAAGAATAGAGATT-GTTACGAGAA
127 ATCTTGAAAAGAAT-GGGATTAG-TATGAGAA
* * * * * * * *
1371961 TCGAT-TCTTGT-TGCATTTAAGGGATGAACTTTGATT-T-TGAAGAAAATACG-GCAATGACAA
1 TC-ATGT-TTGTCT-TATTTAAGAGATAAACTTTGATTCTAT-CA-AAAAT-GGTGGAAAGAAAA
* *** ** * * * * * *
1372021 --TATTCCAATGTAAAAAAAAAAAAATCATCAATATCAT-TAATCTTAGTAAGGAGAATGTGTTT
60 GCT-TTTC--T-T--GCGAAACCAAAGCATCAATATCATGT-ATCCTAATGA-GAAAATATGTTT
* ** * *
1372083 ATAGTGCCTAATC-ACAAAATGAATGAAGATCT-TTACT-AGAA
117 ATGGTGCCTAATCTTGAAAA-GAATG-GGAT-TAGTA-TGAGAA
* * ** * * *
1372124 TCCATTTTTGTCTCATTTGTG-GCACAAACTTAGACTT-GA-CAAAAATTGGTGGAAA-AAAAGC
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGC
* * ** * *
1372185 CTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATCGTGCCT
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCCT
* * *
1372250 AATCTTGAAAAGAATGGGGAATAGCATGAGTAT
126 AATCTTGAAAAGAAT-GGGATTAGTATGAG-AA
* * *
1372283 TCATGTTTG-CTTTATTTAAGAGACAAACTTTGATTCAATCAAAAACT-GTGGAAAGAAAAGCAT
1 TCATGTTTGTC-TTATTTAAGAGATAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTT
* * ** * * **
1372346 TTCGTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTTCTAA
64 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTATGGTGCCTAA
* * *
1372411 TCTTGAAAAGAATGGAAACTATTACT-AGAA
128 TCTTGAAAAGAATGG-GATTAGTA-TGAGAA
* * * * * * * *** * *
1372441 TCGATGCTTGTCTTATTTATGGGATGAATTTTCA-TATAAGTAAAATAGG-GCAAAGAAAAG-AT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
** * * * * **
1372503 TTCTATGC-AAAAGAAAGTCATCAATATCATTTATCCAAATTAGGAAAATGTGTTTACAGTGCCT
64 TTCT-TGCGAAACCAAAG-CATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGGTGCCT
** * *
1372567 AATC-ACAAAATGAATGAAGATTATTACT-AGAA
126 AATCTTGAAAA-GAATG-GGATTAGTA-TGAGAA
* * * ** *
1372599 TCAATGTTTATCTCATTTGAG-GCACGAACTTAGACTT-TAT-AAAAATTGGTGG-AA-AAAAGC
1 TC-ATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGC
* * * * * * * *
1372659 CTTTCTTACAAAACCAATGCACCAACA--ATAGATATCCTAACGAGAAGACTATGTTTATGGTGC
62 TTTTCTTGCGAAACCAAAGCATCAATATCAT-G-TATCCTAATGAGAA-AATATGTTTATGGTGC
* * * *
1372722 CTAATCCT-AAAGAGAATAAGGATTAGTGTGAGTAT
124 CTAATCTTGAAA-AGAAT-GGGATTAGTATGAG-AA
* * * * *
1372757 TCATGTTTGTCTTATATAAGGGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * *
1372822 CTTTC-AACACCAAAGCATCAATGTCATGTATCCTAA--AGAAAGGCATATGATTTA-GGTTCCT
66 CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAA---ATATG-TTTATGGTGCCT
* * * **
1372883 AATGC-TGAAAATAATGGACACT-GTCGCGAGAA
126 AAT-CTTGAAAAGAATGG-GATTAGT-ATGAGAA
* * * * *** * * *
1372915 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAATATAGG-GCAAAGAAAAGATT
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTT
* ** * ** * * * * **
1372979 TCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGACGAGAATGTGTTTACAGTGCCTAA
64 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAAATATGTTTATGGTGCCTAA
** ** * *
1373044 TC-ACAAAATGAATAAAGATCATTACT-AGAA
128 TCTTGAAAA-GAAT-GGGATTAGTA-TGAGAA
* * * ** * *
1373074 TCCATGTTTCTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAATATGGTGGAAA-ACAAGC
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-TTCTATCAAAA-ATGGTGGAAAGAAAAGC
* ** * * ** * *
1373135 CTTTCTTGC-AAATTAAAAGCACCAAGATCGGGTATCCTAATGAGAAGACTAAGTTTATGGTGCC
62 TTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAA-AATATGTTTATGGTGCC
* * *
1373199 TATTCTTGAAAAGAATGGGGAATAGTATGAGTAT
125 TAATCTTGAAAAGAAT-GGGATTAGTATGAG-AA
** * * * *
1373233 TCATGTTTGTCTTATTTAAGAGGCAAACTTTCACTCTGTCAAAAACGGTGGAAAGAAAAGCTTTT
1 TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
** * ** * *
1373298 CTTGC-AACACCAAAGCAAGAATGTCATGTATCCTAATGAAGGGAATGTGCTTT-TGGTTTCC-A
66 CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATG-TTTATGG-TGCCTA
*
1373360 ATCTTGAAAA-AATGGAGATT-GTTACGAGAA
127 ATCTTGAAAAGAATGG-GATTAG-TATGAGAA
* * * * * * *
1373390 TCGAAGCTTATCTTATTTAAGGGATAAACTTTGACTT-TA-AAGAAAATAGG-GCAAAGAAAAGA
1 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTCTATCA-AAAAT-GGTGGAAAGAAAAGC
* * * * ** * * * * * *
1373452 TATCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAG-AAGTATGTCTTTATAGTGGC
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAAATATG--TTTATGGTGCC
** * * * *
1373516 TAATC-ACAAAGTGAATGAAGATCATTACT-AGAA
125 TAATCTTGAAA-AGAATG-GGATTAGTA-TGAGAA
* * * * * ** *
1373549 TCCATGTTTGTATCATCTGAG-GCATGAA-TATAAACTT-TA-CAAAAATTGGTGCAAA-AAAAG
1 T-CATGTTTGTCTTATTTAAGAG-ATAAACT-TTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG
* * *
1373609 CTTTTCTTGTGAAACCAAAGCACCAACATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGC
61 CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-A-ATATGTTTATGGTGC
* *
1373673 CTAATCTTAAAAAAAATGGGGATT-GCTATGTTTAGGATA
124 CTAATCTTGAAAAGAAT-GGGATTAG-TATG---A-GA-A
* * *
1373712 CTTGATGTTTGTGTCTTATTTAAGGGATAAACTTTGAATCTATCAAAAATGGTGGAAAGAAAAGC
1 --TCATG-TT-TGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* * * * * * * *
1373777 TTTTCTTGCGACACCAAAGCACCAATGTAATATATCCTAATGAAGAGAATGTGTTT-TAGGTTCC
62 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAAATATGTTTAT-GGTGCC
* * * * *
1373841 CAATGC-TGAAAATAATGGACACTATTATGAGAA
125 TAAT-CTTGAAAAGAATGG-GATTAGTATGAGAA
* *
1373874 TCAATGCTTGTTTTATTTAAG
1 TC-ATGTTTGTCTTATTTAAG
1373895 GGATGATGGA
Statistics
Matches: 4446, Mismatches: 1319, Indels: 897
0.67 0.20 0.13
Matches are distributed among these distances:
155 3 0.00
156 99 0.02
157 618 0.14
158 1405 0.32
159 1552 0.35
160 369 0.08
161 115 0.03
162 66 0.01
163 94 0.02
164 10 0.00
165 4 0.00
166 29 0.01
167 78 0.02
168 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (156 bp):
TCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAAATATGTTTATGGTGCCTAATCT
TGAAAAGAATGGGATTAGTATGAGAA
Found at i:1368226 original size:157 final size:159
Alignment explanation
Indices: 1367895--1368242 Score: 463
Period size: 157 Copynumber: 2.2 Consensus size: 159
1367885 TTGGTGGGGA
* * * * *
1367895 AAAAGCTTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATG
1 AAAACCTTTTCTTGCGACACCAAAGCATCAATATCGGGTATCCTAATGAGAAAACTATGTTAATG
* * *
1367960 GTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTAATCATGTTTGTCTTATTTAAGAGATAA
66 GTGCCTAATCTTCAAAAGAATAGGGAATAGTATAAGTAATCATGTTTGTCTTATTTAAGAGATAA
*
1368025 ACTTTGATTCTATCAAAAATGGTGGAAAG
131 ACTTTGATTCTATCAAAAATGATGGAAAG
* *
1368054 AAAACCTTTTCTTGCGACACCAAAGCATCAATATCGGGTATGCTAATGAGAAGACTAT-TCTAAT
1 AAAACCTTTTCTTGCGACACCAAAGCATCAATATCGGGTATCCTAATGAGAAAACTATGT-TAAT
* * * * *
1368118 GGTGCC-AATCTTCAAAAGAAT-GGGAAATATTATAAGT-ATTATTTTTTTTTTATTTAAGAGAT
65 GGTGCCTAATCTTCAAAAGAATAGGG-AATAGTATAAGTAATCATGTTTGTCTTATTTAAGAGAT
*
1368180 AAACTTTGATTCTATCTAAAATGATGGAAAG
129 AAACTTTGATTCTATCAAAAATGATGGAAAG
* *
1368211 AACAA-CTTTTTTTGCGACCCCAAAGCATCAAT
1 AA-AACCTTTTCTTGCGACACCAAAGCATCAAT
1368243 GCCATGTATC
Statistics
Matches: 167, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
157 80 0.48
158 26 0.16
159 61 0.37
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (159 bp):
AAAACCTTTTCTTGCGACACCAAAGCATCAATATCGGGTATCCTAATGAGAAAACTATGTTAATG
GTGCCTAATCTTCAAAAGAATAGGGAATAGTATAAGTAATCATGTTTGTCTTATTTAAGAGATAA
ACTTTGATTCTATCAAAAATGATGGAAAG
Found at i:1369286 original size:476 final size:475
Alignment explanation
Indices: 1365957--1371472 Score: 5441
Period size: 476 Copynumber: 11.6 Consensus size: 475
1365947 CCTACAAACA
* * * * * *
1365957 TTAAGTAAAATACGACAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTGTCCCA
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
1366022 ATGAG-GAGTATGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATTCATG
66 ATGAGAG-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
1366086 TTTGTCTCATTTAAGGCACGAACTTAGATTTTACAAAAATTGGTGGGAAAAAAAGCCATTCTTGC
130 TTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGT-GGAAAAAAAGCCTTTCTTGC
* * * * *
1366151 GAAACGAAAGAACCAATATCGTGTATCCTAGTGAAAAAACTATGTTTACT-GTGCCTAATCTTGA
194 GAAACCAAAGCACCAATATCG-GTATCCTAATGAGAAGACTATGTTTA-TGGTGCCTAATCTTGA
* *
1366215 AAAGAATAGGGAATAGTATGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATC
257 AAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATC
* * *
1366280 AAAAACGGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAACGAA
322 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * *
1366345 AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAATTGTTTCTAGAATAGATGCTTGTC
387 GGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC
* * **
1366410 TTATTTAAGGAATGAACTTTAACA
452 TTATTTAAGGGATGAACTTTGATT
* * * *
1366434 TTAAGTAAAATAAGGCAAAGAAAAGATTTTCACGCAAAGGAAAATCATTAATATCATTTATCCTA
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * * * * *
1366499 ATAACGA-GTATATGTCTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-AAAATCCCTA
66 ATGA-GAGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
1366562 TTTGTCTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-CT
130 TTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGC-
* * *** *
1366626 GAAACCAAAACACCAATATCGTATATCCTAATGAGAAGACTATGTTTACATTGCCTAATCTCGAA
194 GAAACCAAAGCACCAATATCG-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* *
1366691 AAGAATGGGGAATAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-A
258 AAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCA
* * * * * * *
1366755 AAAACAGAGGAAAGAAAAACTTTTCTTGCGACACCAAAACATCAATGTCATCTACCCTAATGAAA
323 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* * * *
1366820 GGAATGTGTTTTTTGATCCCAATCTTGAAAATG-GTGGAGATTGTTACAAGAATCAATGCTTGTC
388 GGAATGTGTTTTTGGATCCCAATCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTC
*
1366884 TTATTTAAGGGA-GGACTTTGATT
452 TTATTTAAGGGATGAACTTTGATT
* * * *
1366907 TTAA-AGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTT
1 TTAAGA-AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* ** * * *
1366971 AATGAG-GAGAATGTGTTTATAGTGCCCAATCTTAAAATGAATGAAGATGAATAGTAGAATCCAT
65 AATGAGAG-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * * * * * *
1367035 ATTGGTATCATTTGAGGGAGGAACTAAGACTTTAAAAAAATTAGGT-GAAAGAAAGCATTTCTGG
129 GTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATT-GGTGGAAAAAAAGCCTTTCTTG
* * * *
1367099 TGAAATCAATGC-CTCAATATCGAGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCCTG
193 CGAAACCAAAGCAC-CAATATCG-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
* *
1367162 AAAAGAATGGGGAATAGTATGAGTATT-ATTGTTTGTCTTATGTAAGAGACAAACTTTGATTCTA
256 AAAAGAATGGGGAATAGTATGAGTATTCA-TGTTTGTCTTATTTAAGAGACAAACTTTGATTCAA
** * * * * *
1367226 T-AAAAATAGAGGAAA-AAAAGCTTTTCTTACGATACCAAAGCATTAATGTCATCTATCCTAATG
320 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
1367289 AAGGGAATGTGTTTTTCGATCCCAATCTTGAAAAGGATAGAGATTGTTACGAGAATCGATACTTG
385 AAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTG
*
1367354 TCTTATTTAAAGGATGAACTTTGATT
450 TCTTATTTAAGGGATGAACTTTGATT
* * * * * *
1367380 TTAA-AGAATATACGGCAAA-AAAAGATTTTCATG-TAAA-AAAATCATCAATATCAATAATCTT
1 TTAAGA-AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
1367441 AATGACGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATAAATATCATTACTAGAATCCAT
65 AATGA-GAGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * **
1367505 ATTTGTCTCATTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACG
129 GTTTGTCTC----A-T-TTGA-G---G-C--A--T----G---AACTTAGACTCTACAAAAATTG
* * * * * * * * * * * *
1367570 ATGGAAGGAAAAGCTTTTCCTACGACACTAAAGCATCAATTTCATGTACCCTAATGA-AAGGAAT
172 GTGGAA-AAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC-GGTATCCTAATGAGAA-GACT
* * * * ** * * * *
1367634 GTGTTTTTGGTTCCCAATCTCAAAAAGAATGGAGACT-GT-TGCAAG-AATCGATGCTTGTCTTA
234 ATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATG--AGTATTC-ATGTTTGTCTTA
* ** * ** * * * * * * **
1367696 TTTAAGGGATGAACTTTGACTTTAAAGAAAATA-GG-GCAAGGAAAAGATTTTCATGCAAAAGAA
296 TTTAAGAGACAAACTTTGA-TTCAATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * * * **
1367759 AATCATCAATATCATCTATCCTAATG-AGGAAAATGTGTTTATAG-TGCCTAATC-ACAAAATGA
359 AAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GA
* * * * ** * * * * * *
1367821 ATGAAGATTATTACTAGAATCCATATTTATCTCATTTGAGGCATGAAC-ATGAAATC
421 ATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG--ATT
* * **** * * ** ** * * *
1367877 TT--CAAAAAT-TGGTGGGGAAAAAGCTTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCT
1 TTAAGAAAAATAAGGCAAAG-AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * ** * * *
1367939 AATGAGA-AAACTATGTTTATGGTGCCTAATCTTGAAAA-GAAT-AGGGATTAGTA-TGAGTAAT
65 AATGAGAGGAA-TGTGTTTATAGTGCCTAATC-ACAAAATGAATGA-AGATCATTACT-AG-AAT
* * * * *
1368000 -CATGTTTGTCTTATTTAAGAG-ATAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAA-CCT
125 CCATGTTTGTCTCATTTGAG-GCATGAACTTAGACTCTA-CAAAAATTGGTGGAAA-AAAAGCC-
* * * *
1368061 TTTCTTGCGACACCAAAGCATCAATATCGGGTATGCTAATGAGAAGACTAT-TCTAATGGTGCC-
186 TTTCTTGCGAAACCAAAGCACCAATATC-GGTATCCTAATGAGAAGACTATGT-TTATGGTGCCT
* * * * * * * *
1368124 AATCTTCAAAAGAATGGGAAATATTATAAGTATT-ATTTTTTTTTTATTTAAGAGATAAACTTTG
249 AATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * * *
1368188 ATTCTATCTAAAATGATGGAAAGAACAA-CTTTTTTTGCGACCCCAAAGCATCAATGCCATGTAT
314 ATTCAATCAAAAACGGTGGAAAGAA-AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * *
1368252 CCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGCGATTGTTGCGAGAATCG
378 CCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
*
1368317 ATGCTTGTCTTATTTAAGGGATGAACTTT-TTT
443 ATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * **
1368349 TTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCGAAAGAAAATCATCAATATTGTTTATCCTA
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
*
1368414 ATGA-AGGGAATGTGTTTATAGT-CCTTAATCACAAAAT-AATAAAGATCATTACTAGAATCCAT
66 ATGAGA-GGAATGTGTTTATAGTGCC-TAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
** * *
1368476 GTTTGTCTCATTTGAGGCACAAACTTAGAC-CTTACAAAATTTGAG-GGAAAAAAAGTCTTTCTT
129 GTTTGTCTCATTTGAGGCATGAACTTAGACTC-TACAAAAATTG-GTGGAAAAAAAGCCTTTCTT
* ** * * * *
1368539 GTGAAACCAAAAAACTAATATCGAGTATCCTAATAAGAAGCCTATATTATTTATGGTGCCTAATC
192 GCGAAACCAAAGCACCAATATCG-GTATCCTAATGAGAAGAC--TA-TGTTTATGGTGCCTAATC
* * * *
1368604 TTGAAAAGAATGGGCAATAGTATGAGTATTAATGTTTGTCTTATTTTAGAGACAAACTTTGGTTC
253 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
1368669 AGTCAAAAACGGTGGAAAGAAAAGCTTTTCCTGTGACACCAAAGTATCAATGTCAAGTA-CCTAA
318 AATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * * * *
1368733 TAAAGGGAATATGTTTTTGGATCCTAATCCTGAAAACAATGGAGATTGTTGCGAGAATCGATGCT
383 TGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCT
1368798 TGTCTTATTTAAGGGATGAACTTTGATT
448 TGTCTTATTTAAGGGATGAACTTTGATT
* * **
1368826 TTAAGAAAAATAAGGCAAAGAAAAGA-TTTCTATGCAGATGAAAATCATCAATATTTTTTATCCT
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
1368890 AATGAGAGGAATGTGTTTATAGTGTCTAATCACAAAAAGAATGAAGATCACTACTAGAACCCATG
65 AATGAGAGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
1368955 TTTGTCTCATTTGAGGCATGAACTTGGACTCAATAAAAATTGGTGGAAAAAAAGCCTTTCTTGCA
130 TTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
* * * * *
1369020 AAACCAAAGCGCCAATATCAGGTATCCTACTAAGAAGCCTATATTTATGGTGCCTAATCTTGAAA
195 AAACCAAAGCACCAATATC-GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * * * * *
1369085 AGAATGGGCAATAGTATAAGTATTCATGTCTATCTTATTTAAGAGACAAGCTTTTATTCAATCAA
259 AGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAA
** * * * * *
1369150 AAACAATGGAACGAAAAGCTTTTCTTGCGACGCTAAAGTATCAATGTCATGCATCCTAATGAAGG
324 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * *
1369215 GAACGTGTTTTTGGATCCCTATCTTTAAAAGATTGGAGGTTGTTACGAGAATCGATGCTTGTCAT
389 GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
*
1369280 ATTTAAGGGATAAACTTTGATT
454 ATTTAAGGGATGAACTTTGATT
* * * **
1369302 TTAA-AGAAAAGACGGCAAAGAAAAGA-TTTCTATGCAAAA-AAAAT-ATCAATATCATTAATAA
1 TTAAGA-AAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCC
* * *
1369363 TAGTGAGGAGG-ATGTATTTATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
64 TAATGA-GAGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * *
1369427 TATTTATCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTGAGGAAAAAA-CTTTTCTT
128 TGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTG-GAAAAAAAGCCTTTCTT
* * * *
1369491 GCGAGACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
192 GCGAAACCAAAGCACCAATATCG-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
* ** *
1369556 AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGGGAGACAAACTTTGATTCTA
256 -AAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAA
* * * * * *
1369621 TCAAAAATGGTGAAAAAAAAAGCTTTTCTTACAACACCAAAGTATCAATGTCATGTATCCTAATG
320 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
1369686 AAGGGAATGTGTTTTTGGATCCCAATCTTAAAAACAATGGAGATTGTTGCGAGAATCAATGCTTG
385 AAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTG
1369751 TCTTATTTAAGGGATGAACTTTGATT
450 TCTTATTTAAGGGATGAACTTTGATT
* * * * **
1369777 TTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCACAAA-AAAATGATCAATATTTTTTATCCT
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCA-AAAGAAAATCATCAATATCATTTATCCT
* * * * * * *
1369841 AATGAGAAGAACGTATTTATAGT--CTAATCACAAAAAGAATGAAGATCACTACTAGAACCCCTG
65 AATGAGAGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * **
1369904 TTTGTCTCATTTGAAGCGTGAACTTAGACTCTACAAAAGTTGGTGAAAAAAAAGCCTTTCTTATG
130 TTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
* * * *
1369969 AAACCAAAGCACCAATATCAGGTATCCTACTGAGAAGCCTCTATTTATGGTGCCTAATCTTG-AA
195 AAACCAAAGCACCAATATC-GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * *
1370033 AGAATGGGCAATAGTATAAGTATTCATGTGTGTCTTATTTAAGAGACAAACTTTGATTCAATCAA
259 AGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAA
* * * * *
1370098 AAATGGTGGAAAGAAAAGCATTTCTTGTGACGCCAAAGTATCAATGTCATGTATCCTAATGAAGG
324 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
** * *** * * * *
1370163 GAATGTGTTTTTGTTTCCTAATCTTGAAAAAGAACATAAACTGTTACTAGAATCGATGCTTGTGT
389 GAATGTGTTTTTGGATCCCAATCTTG-AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* **
1370228 TATTTATGGGATGAACTTTGAGA
453 TATTTAAGGGATGAACTTTGATT
* * * * *
1370251 TTAAGTAAAATATGGCAAAGAAAAGATTTTGGATGCAAAAGAAAATCATAAATATCAGTTATCCT
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * * *
1370316 AATTAG-GAAAATGCGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAAG
65 AATGAGAG-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
1370380 GTTTATCTCATTTGATGCACGAACTTAGACTTTATAAAAATTGGTGG-AAAAAAGGCTTTCTTAC
129 GTTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGC
* * * * *
1370444 AAAACCAAAGCACCAATAATAGGTATCCTAACGAGAAGACTATTTTTATGGTGCCTAATCCTGAA
194 GAAACCAAAGCACCAAT-ATCGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* * * * * *
1370509 AAGAATGAGGATTTGTATGACTATTCATGTCTGTCTTATTTAAGAGAGAAACTTTGATTTC-ATC
258 AAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCAATC
* *
1370573 AAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCACAGCATCAATGTCATGTATCCTAATGAA
322 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * *
1370638 GGGAATGTGTTTTTGGTTTCCAATCTTGAAAAGAGTGGAGATTGTTGCGAGAATCGATGCTTGTC
387 GGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC
* *
1370703 TTATTTAAGGGATGAACATTGACT
452 TTATTTAAGGGATGAACTTTGATT
* * * * *
1370727 TTAAGGAAAGTAGGGCAAAAAAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCT
1 TTAAGAAAAATAAGGC-AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
1370792 AATGAG-GACAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATTATTACTAGAATCTAT
65 AATGAGAG-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* *
1370856 ATTTGTCTCATTCGAGGCATGAACTTAGACT-TCACAAAAATTGGTGGCAAAAAAA-CCTTTCTT
129 GTTTGTCTCATTTGAGGCATGAACTTAGACTCT-ACAAAAATTGGTGG-AAAAAAAGCCTTTCTT
* * *
1370919 GCGAAACCAAAGCACAAATATCGGGAATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
192 GCGAAACCAAAGCACCAATATC-GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
* * * **
1370984 AAAAGAATGGGGAATAGTATGAGTATTTATTTTTCTCTTATTTAAGAGACAAACTTTGATTTTAT
256 AAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAAT
* * * * * * *
1371049 CAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCACCAATTTCAAGTATCCTAATCA
321 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * **
1371114 AAGGAATGTGTTTTTGGATCCCAATCGTGAAAAGAATAGAGATTATTGTGAGAATCGATGCTTGT
386 AGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGT
* * *
1371179 CTTATTTAAGAGATAAACTTTAATT
451 CTTATTTAAGGGATGAACTTTGATT
* * * * * * **
1371204 TTAAGGAAAATAAGTCAAAGAAAATATTTTCATGCATAGGAAAATCATCAAAATTTTTTATCCTA
1 TTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
1371269 ATGAG-GAGAATATGTTTATAGTGCCTAATCACAAAATAAATGAAGCTCATTACTAAAATCCATG
66 ATGAGAG-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* ** * * *
1371333 TTTGTCTCATTTGCGGCACAAACTTAGACTCTACAAAAATTGGAGGAAAAAAAGCCTTTTTTACG
130 TTTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
** * *
1371398 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGCACCCAATTTTGAAA
195 AAACCAAAGCACCAATATC-GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
*
1371463 ATAATGGGGA
259 AGAATGGGGA
1371473 TTGCTGCGAG
Statistics
Matches: 4153, Mismatches: 742, Indels: 289
0.80 0.14 0.06
Matches are distributed among these distances:
470 83 0.02
471 6 0.00
472 181 0.04
473 415 0.10
474 652 0.16
475 717 0.17
476 848 0.20
477 785 0.19
478 119 0.03
479 2 0.00
480 1 0.00
483 2 0.00
485 1 0.00
489 2 0.00
491 3 0.00
492 24 0.01
493 50 0.01
494 48 0.01
495 21 0.01
496 111 0.03
497 14 0.00
498 61 0.01
499 7 0.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGAGGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
TTGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGA
AACCAAAGCACCAATATCGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAG
AATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAA
ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
ATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
TTAAGGGATGAACTTTGATT
Found at i:1371501 original size:476 final size:475
Alignment explanation
Indices: 1365957--1378209 Score: 6119
Period size: 475 Copynumber: 25.4 Consensus size: 475
1365947 CCTACAAACA
* * * * * *
1365957 TTAAGTAAAATACGACAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTGTCCCA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
1366022 ATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATTCATGT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * *
1366087 TTGTCTCATTTAAGGCACGAACTTAGATTTTACAAAAATTGGTGGGAAAAAAAGCCATTCTTGCG
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGT-GGAAAAAAAGCCTTTCTTGCG
* * * * * *
1366152 AAACGAAAGAACCAATATCGTGTATCCTAGTGAAAAAACTATGTTTACT-GTGCCTAATCTTGAA
195 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTA-TGGTGCCTAATCTTGAA
* * * *
1366216 AAGAATAGGGAATAGTATGAGTAT-TTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATC
259 AAGAAT-GGGGATAGTATGAGAATCAT-TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
1366280 AAAAACGGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAACGAA
322 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * *
1366345 AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAATTGTTTCTAGAATAGATGCTTGTC
387 AGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTC
* * **
1366410 TTATTTAAGGAATGAACTTTAACA
452 TTATTTAAGGGATGAACTTTGATT
* * * *
1366434 TTAAGTAAAATAAGGCAAAGAAAAGATTTTCACGCAAAGGAAAATCATTAATATCATTTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * * * * * *
1366499 ATAACGAGTATATGTCTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-AAAATCCCTAT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
1366563 TTGTCTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-CTG
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGC-G
* ** *** *
1366627 AAACCAAAACACCAATATCGTATATCCTAATGAGAAGACTATGTTTACATTGCCTAATCTCGAAA
195 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* *
1366692 AGAATGGGGAATAGTATGAGTATTCA-TGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-A
260 AGAATGGGG-ATAGTATGAG-AATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
** * * * * *
1366755 AAAACAGAGGAAAGAAAAACTTTTCTTGCGACACCAAAACATCAATGTCATCTACCCTAATGAAA
323 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA
* * * * *
1366820 GGAATGTGTTTTTTGATCCCAATCTTGAAAATG-GTGGAGATTGTTACAAGAATCAATGCTTGTC
388 GGAATGTGTTTTTGGATCCCAATCTTGAAAA-GAATGGAGATTGTTGCGAGAATCGATGCTTGTC
*
1366884 TTATTTAAGGGA-GGACTTTGATT
452 TTATTTAAGGGATGAACTTTGATT
* * * * *
1366907 TTAAAGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAATCTTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* ** * * * *
1366972 ATGAGGAGAATGTGTTTATAGTGCCCAATCTTAAAATGAATGAAGATGAATAGTAGAATCCATAT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * * * * * * *
1367037 TGGTATCATTTGAGGGAGGAACTAAGACTTTAAAAAAATTAGGT-GAAAGAAAGCATTTCTGGTG
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATT-GGTGGAAAAAAAGCCTTTCTTGCG
* * * *
1367101 AAATCAATGC-CTCAATATCGAGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCCTGAA
195 AAACCAAAGCAC-CAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* * *
1367164 AAGAATGGGGAATAGTATGAGTATTATTGTTTGTCTTATGTAAGAGACAAACTTTGATTCTAT-A
259 AAGAATGGGG-ATAGTATGAGAATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * * *
1367228 AAAATAGAGGAAA-AAAAGCTTTTCTTACGATACCAAAGCATTAATGTCATCTATCCTAATGAAG
323 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA
* * * * *
1367292 GGAATGTGTTTTTCGATCCCAATCTTGAAAAGGATAGAGATTGTTACGAGAATCGATACTTGTCT
388 GGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTCT
*
1367357 TATTTAAAGGATGAACTTTGATT
453 TATTTAAGGGATGAACTTTGATT
* * * * * * *
1367380 TTAAAGAATATACGGCAAA-AAAAGATTTTCATG-TAAA-AAAATCATCAATATCAATAATCTTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
1367442 ATGACGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAATATCATTACTAGAATCCATAT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * ** *
1367507 TTGTCTCATTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGAT
131 TTGTCTC----A-T-TTGA-G---G-C-----------ACGAACTTAGACTCTACAAAAATTGGT
* * * * * * * * ** * * *
1367572 GGAAGGAAAAGCTTTTCCTACGACACTAAAGCATCAATTTCATGTACCCTAATGA-AAGGAATGT
174 GGAA-AAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAA-GACTAT
* * * ** * *
1367636 GTTTTTGGTTCCCAATCTCAAAAAGAATGGAGACT-GT-TGCAAGAATCGA-TGCTTGTCTTATT
237 GTTTATGGTGCCTAATCTTGAAAAGAATGGGGA-TAGTATG--AGAATC-ATTGTTTGTCTTATT
* ** * * * * * * * **
1367698 TAAGGGATGAACTTTGACTT-TA-AAGAAAATAGG-GCAAGGAAAAGATTTTCATGCAAAAGAAA
298 TAAGAGACAAACTTTGA-TTCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * * **
1367760 ATCATCAATATCATCTATCCTAATG--AGGAAAATGTGTTTATAG-TGCCTAATC-ACAAAATGA
360 AGCATCAATGTCATGTATCCTAATGAAAGG--AATGTGTTTTTGGAT-CCCAATCTTGAAAA-GA
* * * * * ** * * * * * *
1367821 ATGAAGATTATTACTAGAATCCATATTTATCTCATTTGAGGCATGAAC-ATGAAATC
421 ATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG--ATT
* * **** * * ** ** * * *
1367877 TTCA--AAAAT-TGGTGGGGAAAAAGCTTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCT
1 TTAAGGAAAATAAGGCAAAG-AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * ** * * *
1367939 AATGA-GAAAACTATGTTTATGGTGCCTAATCTTGAAAA-GAAT-AGGGATTAGTA-TGAGTAAT
65 AATGAGGAGAA-TGTGTTTATAGTGCCTAATC-ACAAAATGAATGA-AGATCATTACT-AG-AAT
* * ** * *
1368000 -CATGTTTGTCTTATTTAAGAG-ATAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAA-CCT
125 CCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTCTA-CAAAAATTGGTGGAAA-AAAAGCC-
* * * *
1368061 TTTCTTGCGACACCAAAGCATCAATATCGGGTATGCTAATGAGAAGACTAT-TCTAATGGTGCC-
186 TTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGT-TTATGGTGCCT
* * * * * * * * *
1368124 AATCTTCAAAAGAATGGGAAATATTATAAGTATTATT-TTTTTTTTATTTAAGAGATAAACTTTG
250 AATCTTGAAAAGAATGGG-GATAGTATGAGAATCATTGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
1368188 ATTCTATCTAAAATGATGGAAAGAACAA-CTTTTTTTGCGACCCCAAAGCATCAATGCCATGTAT
314 ATTCTATCAAAAATGGTGGAAAGAA-AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* *
1368252 CCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGCGATTGTTGCGAGAATCG
378 CCTAATGAAAGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCG
*
1368317 ATGCTTGTCTTATTTAAGGGATGAACTTT-TTT
443 ATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * * **
1368349 TTAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCGAAAGAAAATCATCAATATTGTTTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
*
1368414 ATGAAGG-GAATGTGTTTATAGT-CCTTAATCACAAAAT-AATAAAGATCATTACTAGAATCCAT
66 ATG-AGGAGAATGTGTTTATAGTGCC-TAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
1368476 GTTTGTCTCATTTGAGGCACAAACTTAGAC-CTTACAAAATTTGAG-GGAAAAAAAGTCTTTCTT
129 GTTTGTCTCATTTGAGGCACGAACTTAGACTC-TACAAAAATTG-GTGGAAAAAAAGCCTTTCTT
* ** * * * * *
1368539 GTGAAACCAAAAAACTAATATCGAGTATCCTAATAAGAAGCCTATATTATTTATGGTGCCTAATC
192 GCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGAC--TA-TGTTTATGGTGCCTAATC
* * * * * *
1368604 TTGAAAAGAATGGGCAATAGTATGAGTATTAATGTTTGTCTTATTTTAGAGACAAACTTTGGTTC
254 TTGAAAAGAATGGG-GATAGTATGAGAATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
1368669 -AGTCAAAAACGGTGGAAAGAAAAGCTTTTCCTGTGACACCAAAGTATCAATGTCAAGTA-CCTA
318 TA-TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * *
1368732 AT-AAAGGGAATATGTTTTTGGATCCTAATCCTGAAAACAATGGAGATTGTTGCGAGAATCGATG
382 ATGAAA-GGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATG
1368796 CTTGTCTTATTTAAGGGATGAACTTTGATT
446 CTTGTCTTATTTAAGGGATGAACTTTGATT
* * * **
1368826 TTAAGAAAAATAAGGCAAAGAAAAGA-TTTCTATGCAGATGAAAATCATCAATATTTTTTATCCT
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
1368890 AATGA-GAGGAATGTGTTTATAGTGTCTAATCACAAAAAGAATGAAGATCACTACTAGAACCCAT
65 AATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
1368954 GTTTGTCTCATTTGAGGCATGAACTTGGACTCAATAAAAATTGGTGGAAAAAAAGCCTTTCTTGC
129 GTTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGC
* * * * * * *
1369019 AAAACCAAAGCGCCAATATCAGGTATCCTACTAAGAAGCCTATATTTATGGTGCCTAATCTTGAA
194 GAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* * * * * * * *
1369084 AAGAATGGGCAATAGTATAAGTATTCA-TGTCTATCTTATTTAAGAGACAAGCTTTTATTCAATC
259 AAGAATGGG-GATAGTATGAG-AATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
*** * * * * *
1369148 AAAAACAATGGAACGAAAAGCTTTTCTTGCGACGCTAAAGTATCAATGTCATGCATCCTAATGAA
322 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * * *
1369213 GGGAACGTGTTTTTGGATCCCTATCTTTAAAAGATTGGAGGTTGTTACGAGAATCGATGCTTGTC
387 AGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTC
* *
1369278 ATATTTAAGGGATAAACTTTGATT
452 TTATTTAAGGGATGAACTTTGATT
* * * * **
1369302 TTAAAGAAAAGACGGCAAAGAAAAGA-TTTCTATGCAAAA-AAAAT-ATCAATATCATTAATAAT
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
1369364 AGTGAGGAGGATGTATTTATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATA
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
1369429 TTTATCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTGAGGAAAAAA-CTTTTCTTGC
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTG-GAAAAAAAGCCTTTCTTGC
* * ** *
1369493 GAGACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
194 GAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG-A
* **
1369558 AAAGAATGGGGATTAGTATGAGTATTCA-TGTTTGTCTTATTTGGGAGACAAACTTTGATTCTAT
258 AAAGAATGGGGA-TAGTATGAG-AATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
1369622 CAAAAATGGTGAAAAAAAAAGCTTTTCTTACAACACCAAAGTATCAATGTCATGTATCCTAATGA
321 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * *
1369687 AGGGAATGTGTTTTTGGATCCCAATCTTAAAAACAATGGAGATTGTTGCGAGAATCAATGCTTGT
386 AAGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGT
1369752 CTTATTTAAGGGATGAACTTTGATT
451 CTTATTTAAGGGATGAACTTTGATT
* * * **
1369777 TTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCACAAA-AAAATGATCAATATTTTTTATCCT
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCA-AAAGAAAATCATCAATATCATTTATCCT
* * * * * * *
1369841 AATGAGAAGAACGTATTTATAGT--CTAATCACAAAAAGAATGAAGATCACTACTAGAACCCCTG
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* ** * * **
1369904 TTTGTCTCATTTGAAGCGTGAACTTAGACTCTACAAAAGTTGGTGAAAAAAAAGCCTTTCTTATG
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
* * * * *
1369969 AAACCAAAGCACCAATATCAGGTATCCTACTGAGAAGCCTCTATTTATGGTGCCTAATCTTG-AA
195 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * * * *
1370033 AGAATGGGCAATAGTATAAGTATTCA-TGTGTGTCTTATTTAAGAGACAAACTTTGATTCAATCA
260 AGAATGGG-GATAGTATGAG-AATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
1370097 AAAATGGTGGAAAGAAAAGCATTTCTTGTGACGCCAAAGTATCAATGTCATGTATCCTAATGAAG
323 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA
** * *** * * * * *
1370162 GGAATGTGTTTTTGTTTCCTAATCTTGAAAAAGAACATAAACTGTTACTAGAATCGATGCTTGTG
388 GGAATGTGTTTTTGGATCCCAATCTTG-AAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTC
* **
1370227 TTATTTATGGGATGAACTTTGAGA
452 TTATTTAAGGGATGAACTTTGATT
* * * * *
1370251 TTAAGTAAAATATGGCAAAGAAAAGATTTTGGATGCAAAAGAAAATCATAAATATCAGTTATCCT
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * * *
1370316 AATTAGGAAAATGCGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAAGG
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * *
1370381 TTTATCTCATTTGATGCACGAACTTAGACTTTATAAAAATTGGTGG-AAAAAAGGCTTTCTTACA
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
* * * *
1370445 AAACCAAAGCACCAATAAT-AGGTATCCTAACGAGAAGACTATTTTTATGGTGCCTAATCCTGAA
195 AAACCAAAGCACCAAT-ATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* * * * * *
1370509 AAGAATGAGGATTTGTATGACTATTCA-TGTCTGTCTTATTTAAGAGAGAAACTTTGATT-TCAT
259 AAGAATGGGGA-TAGTATGA-GAATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-AT
* * *
1370572 CAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCACAGCATCAATGTCATGTATCCTAATGA
321 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * *
1370637 AGGGAATGTGTTTTTGGTTTCCAATCTTGAAAAGAGTGGAGATTGTTGCGAGAATCGATGCTTGT
386 AAGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGT
* *
1370702 CTTATTTAAGGGATGAACATTGACT
451 CTTATTTAAGGGATGAACTTTGATT
* * * *
1370727 TTAAGGAAAGTAGGGCAAAAAAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCT
1 TTAAGGAAAATAAGGC-AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
1370792 AATGAGGACAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATTATTACTAGAATCTATA
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
1370857 TTTGTCTCATTCGAGGCATGAACTTAGACT-TCACAAAAATTGGTGGCAAAAAAA-CCTTTCTTG
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCT-ACAAAAATTGGTGG-AAAAAAAGCCTTTCTTG
* * *
1370920 CGAAACCAAAGCACAAATATCGGGAATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGA
193 CGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGA
* * * *
1370985 AAAGAATGGGGAATAGTATGAGTATTTATT-TTTCTCTTATTTAAGAGACAAACTTTGATTTTAT
258 AAAGAATGGGG-ATAGTATGAG-AATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * *
1371049 CAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCACCAATTTCAAGTATCCTAATCA
321 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * *
1371114 AAGGAATGTGTTTTTGGATCCCAATCGTGAAAAGAATAGAGATTATTGTGAGAATCGATGCTTGT
386 AAGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGT
* * *
1371179 CTTATTTAAGAGATAAACTTTAATT
451 CTTATTTAAGGGATGAACTTTGATT
* * * * * **
1371204 TTAAGGAAAATAAGTCAAAGAAAATATTTTCATGCATAGGAAAATCATCAAAATTTTTTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
1371269 ATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATAAATGAAGCTCATTACTAAAATCCATGT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * *
1371334 TTGTCTCATTTGCGGCACAAACTTAGACTCTACAAAAATTGGAGGAAAAAAAGCCTTTTTTACGA
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGA
** * *
1371399 AACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGCACCCAATTTTGAAAA
196 AACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA
* * ** ** * * * ***
1371464 TAATGGGGATTGCTGCGAGAATCATTGCCTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAA
261 GAATGGGGATAG-TATGAGAATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * * ** * * ** *
1371529 AATAGG-GCAAAGAAAAGATTTCCATGC-ACAAGAAAATCATCAATATTTTTTATCCTAATG--A
325 AAT-GGTGGAAAGAAAAGCTTTTCTTGCGAC-ACCAAAGCATCAATGTCATGTATCCTAATGAAA
* * *** * *** * * * * *
1371590 GGACAATGTGTTTATAGTG-T-CTAATCACAAAAAGAATGAAGATCACTACTAGAACCCATGTTT
388 GG--AATGTGTTT-TTG-GATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTT
* * * *
1371653 GTCTCATTTGAA-GCATGAACTTAGACT
449 GTCTTATTT-AAGGGATGAACTTTGATT
* * * ** * * ** * * *
1371680 CTACA--AAAATTAGTGGAAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATC-TGGTATC
1 TTA-AGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT-TTATC
* * * * * * ** * **
1371741 CTAATGA-CAAAACTATTTTTATGGTGCCTAATCCAGAAAAT-AATGGGGATTAGCA-TGAGAAT
63 CTAATGAGGAGAA-TGTGTTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACT-AGAAT
* * * * * * * * * ** *
1371803 TCAAGTTTCTCTTATTT-ATGAG-ACAAACTTTGATTTTATCAAAAAAT-GAAGAAATAAAAGCT
125 CCATGTTTGTCTCATTTGA-G-GCACGAACTTAGACTCTA-CAAAAATTGGTGGAAA-AAAAGCC
* * * ** * * * *
1371865 TTTCTTGCGACACCAAACCATCAATATCATGTATCCTAATGATG-AGAATGTATTTTTGGAT-CC
186 TTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGA-GAAGACTATGTTTATGG-TGCC
* * * * * * * * **
1371928 CAATCTTGAAAAGAATAGAGATTGTTACGAGAATCGATT-CTTGT-TGCATTTAAGGGATGAACT
249 TAATCTTGAAAAGAATGGGGATAG-TATGAGAATC-ATTGTTTGTCT-TATTTAAGAGACAAACT
* * * * * * *** * ** *
1371991 TTGATT-T-TGAAGAAAATACG-GCAATGACAA--TATTCCAATGTAAAAAAAAAAAAATCATCA
311 TTGATTCTAT-CA-AAAAT-GGTGGAAAGAAAAGCT-TTTC--T-T--GCGACACCAAAGCATCA
* * * * * * * ** *
1372051 ATATCAT-TAATCTTAGT-AAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATGAAGA
367 ATGTCATGT-ATCCTAATGAAAG-GAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGGAGA
* * * ** * ** * ** * *
1372112 TCT-TTACTAGAATCCATTTTTGTCTCATTTGTGGCACAAACTTAGACT
428 T-TGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* ** * ** * * ** * * ***
1372160 TGACA--AAAATTGGTGGAAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCC
1 TTA-AGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * ** ** *
1372222 TAATGAGAAGACTATGTTTATCGTGCCTAATCTTGAAAA-GAATGGGGA--A-TAGCATGAGTAT
64 TAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTA-C-T-AGAAT
* * * * * * * * *
1372283 TCATGTTTG-CTTTATTTAAGAG-ACAAACTTTGATTCAATCAAAAACT-GTGGAAAGAAAAGCA
125 CCATGTTTGTC-TCATTTGAG-GCACGAACTTAGACTCTA-CAAAAATTGGTGGAAA-AAAAGCC
* * * ** * * * * **
1372345 TTTCGTGCGACACCAAAGCATCAATATCATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTTCT
186 TTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGA-AGACTATGTTTATGGTGCCT
** * * * * ** *
1372409 AATCTTGAAAAGAATGGAAACTATTACT-AGAATCGA-TGCTTGTCTTATTTATGGGATGAATTT
250 AATCTTGAAAAGAATGGGGA-TAGTA-TGAGAATC-ATTGTTTGTCTTATTTAAGAGACAAACTT
* * *** * * * ** *
1372472 TCA-TATAAGTAAAATAGG-GCAAAGAAAAG-ATTTCTATGC-AAAAGAAAGTCATCAATATCAT
312 TGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCT-TGCGACACCAAAG-CATCAATGTCAT
* * * *** * ** * * *
1372533 TTATCCAAAT--TAGGAAAATGTGTTTACAG-TGCCTAATC-ACAAAATGAATGAAGATTATTAC
374 GTATCCTAATGAAAGG--AATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGGAGATTGTTGC
* * * * * * * * * *
1372594 TAGAATCAATGTTTATCTCATTTGAGGCACGAACTTAGACT
435 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* ** ** * * ** * * **
1372635 TTATA--AAAAT-TGGTGGAA-AAAAGCCTTTCTTACAAAA-CCAATGCACCAACAAT-AGATAT
1 TTA-AGGAAAATAAGG-CAAAGAAAAGATTTTCATGCAAAAGAAAAT-CATCAA-TATCATTTAT
* * * * * * * * *
1372694 CCTAACGAGAAGACTATGTTTATGGTGCCTAATC-CTAAAGA-GAAT-AAGGATTAGT-GTGAGT
62 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAA-ATGAATGAA-GATCATTACT-AGA
* * * * * * * * * * *
1372755 ATTCATGTTTGTCTTATATAAGGGACAAACTTTGATTTTATCAAAAA-CGGTGGAAAGAAAAGCT
123 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTCTA-CAAAAATTGGTGGAAA-AAAAGCC
* * * ** * * *
1372819 TTTCTTTC-AACACCAAAGCATCAATGTCATGTATCCTAAAGA-AAGGCATATGATTTA-GGTTC
186 TTTCTTGCGAA-ACCAAAGCACCAATATCGGGTATCCTAATGAGAAGAC-TATG-TTTATGGTGC
* ** ** * * **
1372881 CTAATGC-TGAAAATAATGGACACT-GTCGCGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAA
248 CTAAT-CTTGAAAAGAATGGGGA-TAGT-ATGAGAATC-ATTGTTTGTCTTATTTAAGAGACAAA
* *** * * * * ** * * ** * *
1372943 CTTTGATTTTAAGGAATATAGG-GCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCA
309 CTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *** * ** ** ** *
1373007 TTTATCCTAATG-ACGAGAATGTGTTTACAG-TGCCTAATC-ACAAAATGAATAAAGATCATTAC
373 TGTATCCTAATGAAAG-GAATGTGTTTTTGGAT-CCCAATCTTGAAAA-GAATGGAGATTGTTGC
* * * * * * * * * *
1373069 TAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACT
435 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * * ** * ** * * * ***
1373110 TT-A-CAAAATATGGTGGAAA-ACAAGCCTTTCTTGCAAATTAAAAGCACCAAGATCGGGTATCC
1 TTAAGGAAAATA-AG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * ** * * ** ** * * *
1373172 TAATGAGAAGACTAAGTTTATGGTGCCTATTCTTGAAAA-GAATGGGGAAT-AGTA-TGAGTATT
64 TAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAG-ATCATTACT-AGAATC
* ** * * *
1373234 CATGTTTGTCTTATTTAAGAGGCA--AACTTTCACTCTGTCAAAAA-CGGTGGAAAGAAAAGCTT
126 CATGTTTGTCTCATTT--GAGGCACGAACTTAGACTCT-ACAAAAATTGGTGGAAA-AAAAGCCT
** * ** * * * *
1373296 TTCTTGC-AACACCAAAGCAAGAATGTCATGTATCCTAATGA-AGGGAATGTGCTTT-TGGTTTC
187 TTCTTGCGAA-ACCAAAGCACCAATATCGGGTATCCTAATGAGA-AGACTATG-TTTATGG-TGC
* * * * * * * *
1373358 C-AATCTTGAAAA-AATGGAGATTGTTACGAGAATCGA-AGCTTATCTTATTTAAGGGATAAACT
248 CTAATCTTGAAAAGAATGGGGATAG-TATGAGAATC-ATTGTTTGTCTTATTTAAGAGACAAACT
* * * * * * * * ** * *
1373420 TTGACTT-TA-AAGAAAATAGG-GCAAAGAAAAGATATCCATGCAAAAGAAAATCATCAATATCA
311 TTGA-TTCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * * * ** * * ** *
1373482 TTTATCATAATGAGAA-GTATGTCTTTATAG-TGGCTAATC-ACAAAGTGAATGAAGATCATTAC
373 TGTATCCTAATGA-AAGGAATGTGTTTTTGGAT-CCCAATCTTGAAA-AGAATGGAGATTGTTGC
* * * * * * * * ** *
1373544 TAGAATCCATGTTTGTATCATCTGAGGCATGAA-TATAAACT
435 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACT-TTGATT
** * * ** ** * * * *
1373585 TTACA--AAAATTGGTGCAAA-AAAAGCTTTTCTTGTGAAACCAAAGCACCAACATCATGTATCC
1 TTA-AGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * ** ** ** *
1373647 TAATGAGAAGACA-ATGTTTATGGTGCCTAATCTTAAAAAAAATGGGGATTGCTATGT-TTAGGA
64 TAATGAGGAGA-ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA-T-C-AT-TACTA-GA
** * * * ** * *
1373710 TACTTGATGTTTGTGTCTTATTTAAGGGATAAACTTTGAATCTATCAAAAA-TGGTGGAAAGAAA
123 -A-TCCATG-TT-TGTCTCATTTGAGGCACGAACTTAGACTCTA-CAAAAATTGGTGGAAA-AAA
* * * **** * *
1373774 AGCTTTTCTTGCGACACCAAAGCACCAATGTAATATATCCTAATGA-AGAGAATGTGTTT-TAGG
182 AGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGA-AGACTATGTTTAT-GG
* * * ** * * * * * **
1373837 TTCCCAATGC-TGAAAATAATGGACACTATTATGAGAATCAATGCTTGTTTTATTTAAGGGATGA
245 TGCCTAAT-CTTGAAAAGAATGGGGA-TAGTATGAGAATCATTGTTTGTCTTATTTAAGAGACAA
**** * * * ** ** * *** *** * * * * *
1373901 TGGATGATTAGTACCAAAATTTTTTCTTCAATTGGGGGAGCGTAACACCTACCACTACGAGTTAG
308 ACTTTGATT-CTATCAAAA---ATGGTGGAA--AGAAAAGC-T-TTTCTTGCGAC-ACCA--AAG
* * ** * * **
1373966 -GTGACTAACCCT-TGATGGCTCC-ACCACAGCAACCGAGG-GTGTTTGTTCTCCAGTTATCACT
362 CAT--C-AA---TGTCATGTATCCTA--A-TG-AA---AGGAATG--TGTT-T----TT-GGA-T
* * **** * * * * ** *
1374027 ACCTCATTGTTGTACCTCTAAGGGACTGCTTTGTTGC-----TC-TTGTTTGAGAATGATTT-AG
405 -CC-CAATCTTG-A-AAAGAATGGA--G-ATTGTTGCGAGAATCGATGCTT--GTCTTATTTAAG
* * *
1374085 GTACCTCCACGACTAAT-ATT
461 GGA--T-GA--ACT-TTGATT
* * * * *** * * * * ****
1374105 GCCGTAAGTGTTGTAGAACT-AGCCTCCAA-ACTTGACTTTC---CAAAA-AGAGTTA-GGGGAT
1 ---TTAA--G--G-A-AAATAAG--GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
* ** * * * * * ** * *
1374163 GATTCCTCCCGTAAGGCGGCTACG-TTGCTTTGTCTCCTATCGTG-TTGATGGATTTGGCAACAG
55 CATTTAT-CC-TAATGAGG--A-GAATG---TGT-T--TATAGTGCCT-A---A--TCACAAAAT
* * * * * * ** * ** * *
1374226 GTATG--GCTTCATGA-TAGAATTC-TATTTGGC-C-TTT-ATCCATC--ATTTATCCTAATGAG
103 GAATGAAG-ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CGAACTTAGACT-CT-AC
* * ** * ** * * * * * * ** *
1374282 GAGAATAT-GT--TTATAGCGCCTAATC--ACAAAATCAATAAAG-ATCATTA-CCAGAATCC--
164 AAAAAT-TGGTGGAAAAAAAGCCT-TTCTTGCGAAA-C--CAAAGCACCAATATCGGGTATCCTA
**** * * * * *
1374338 AT-CTTTGTCTCAT-TTGA-GGCACGAACTTAGA-CTTTACAAA-AATTGGTAGGAAAATAGCCT
224 ATGAGAAGACT-ATGTTTATGG--TG--CCTA-ATCTTGA-AAAGAA-TGG--GG---ATAG---
* * * ** ** * * * *
1374398 TTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAACGAGA-AGACTATGATTACAGTCCCTA
273 -T-ATGAG-AATCATTG----TTTGTC-T-TAT-TTAA-GAGACAAACTTTGA-T----T--CT-
* ** * ** * ** **
1374462 AACTTGAAAAAATGG-GGAATAGTATTAG-TATTCATGTTTGTCTTATTTAAGAG-A-CAAACT-
319 -A--T-CAAAAATGGTGGAA-AG-AAAAGCTTTTC-T-TGCGAC--A-CCAA-AGCATCAATGTC
* ** * * *
1374522 TTG-ATTCTCTAAAAAATGGAGGAAAGAAAAGCTTTTCT-TACTACACCAAAGCATAATGTCTTG
372 ATGTA-TC-CTAATGAA---AGGAATG---TG-TTTT-TGGA-T-C-CC-A------A--TCTTG
* ** * *
1374585 TATCCTAATGATGGGAATGTGTTTTTGGATTCCAGTCTTGAAAAGAATGGAGATTGTTATCAGAA
415 -A----AA--A---GAATG-G-----AGATT---G--TTG-CGAGAAT--CGA-TGCT-T--G--
*
1374650 TCGATATTTAAGGGATGAACTTTGATT
450 TC-TTATTTAAGGGATGAACTTTGATT
* * * *
1374677 TTAAGGAAAATAAGGAAAAGAAAAGATTTCCATGTAAAA-AATATCATCAATATCATTTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
**
1374741 ATGAGGAGAATGTGTTTATAACGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
** * * * * *
1374806 TTGTCTCATTTGTCGCATGAACTTAGACTTTGCAAAAATTGGTGAAAAAAAAGCCTTTCTTGCAA
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGA
* * * * *
1374871 AACCAAAGCACCAACATCGGGTATCCTAAGGAGAAGACAATGTCTATGGTACCTAATCTTGAAAA
196 AACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA
* * * *
1374936 GAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTTCTTATTTAAGAGACAAACTTTGATT
261 GAATGGGGA-TAGTATG---A-GA-A-TCATTGTT--TGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
1375001 CTTTAAAAAATGG-GAGAAAAAAAAGCTTTTCTTGCGACGCCAAAGCACCAATGTCATGTACCCT
317 CTATCAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
** * * * * * * *
1375065 AATGATGGGAATGTATTTTAGGTTCCCAATGC-TAAAAATAATGGAGATTGTTACGA-AATTGAT
381 AATGAAAGGAATGTGTTTTTGGATCCCAAT-CTTGAAAAGAATGGAGATTGTTGCGAGAATCGAT
** * **
1375128 ATTTGTCTTACTTAACCGATGAACTTTGATT
445 GCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
1375159 TTAAAGAAAAT-AGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTT
1 TTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
1375223 AATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTGCTAGAAACCATG
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
1375288 TTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA-CCTTTTTTGCA
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
* * * *
1375352 AAACCGAAGCACCAATATCGGGTATCTTAATGAGAAGACTATG-TTACTAGTGCCTAATCATGAA
195 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTA-TGGTGCCTAATCTTGAA
* * ** *
1375416 AAGAATAGGGAATAGTATAAGTGTACA-TGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATC
259 AAGAAT-GGGGATAGTATGAGAAT-CATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
1375480 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATTCTAATGAA
322 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * **
1375545 GGGAATGTGTTTTTGTATCCCAGTCTTGAAAAGAATGGAGATTGTTATGAGAATCGA--------
387 AGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTC
* *
1375602 -TATTTAAGGGGTAAACTTTGATT
452 TTATTTAAGGGATGAACTTTGATT
* * * * *
1375625 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCAGGTAAAA-AATATCATCAATATCATCTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
*
1375689 ATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
** * *
1375754 TTGTCTCATTTGTCGCACGAACTTAGACTTTACAAAAATTGGT-GAAAAAAAGGCCTTTCTTGCA
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAA-GCCTTTCTTGCG
* * * *
1375818 AAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTCTATGGTGCCTAATCTTGAAA
195 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
* * * *
1375883 AGAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTTCTTATTTAAGAGACAAACTTTGAT
260 AGAATGGGGA-TAGTATG---A-GA-A-TCATTGTT--TGTCTTATTTAAGAGACAAACTTTGAT
* * * *
1375948 TCTTTAAAAAATGG-GAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTACCC
316 TCTATCAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
** * * * * * *
1376012 TAATGATGGGAATGTGTTTTAGGTTCCCAATGC-TAAAAATAATGGAGACTGTTACGA-AATCGA
380 TAATGAAAGGAATGTGTTTTTGGATCCCAAT-CTTGAAAAGAATGGAGATTGTTGCGAGAATCGA
** * *
1376075 TATTTGTCTTACTTAAGCGATGAACTTTGATT
444 TGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
1376107 TTAAAGAAAAT-AGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTT
1 TTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * * *
1376171 AATAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTGCTAGAAACCATG
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
1376236 TTTGTCTCATTCGAGGCACGAACTTAAACTTTACAAAAATTGGTGGAAAAAAA-CCTTTTTTGCA
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCG
* * *
1376300 AAACCGAAGCACCAATATCGGGTATCTTAATGAGAAGACTATG-TTACTAGTGCCTAATCTTGAA
195 AAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTA-TGGTGCCTAATCTTGAA
* * ** *
1376364 AAGAATAGGGAATAGTATAAGTGTACA-TGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATC
259 AAGAAT-GGGGATAGTATGAGAAT-CATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
1376428 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATTCTAATGAA
322 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * *
1376493 GGGAATGTGTTTTCGGTTCCCAATCTTGAAAAGAATGGATATTGTTGCGAGAATCGATGCTTGTC
387 AGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTC
* * *
1376558 TTATTTAAGGGAAGAGCTTTGATA
452 TTATTTAAGGGATGAACTTTGATT
* * * * * *
1376582 TTAAGTAAAATAGGGCAAAGCAAAGATTTTCATGCAAAAGAAAATCGTCAATACCATATATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
1376647 ATGAGGAGTATGTGTTTGTAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * *
1376712 TTGTCTCATTTGTGGTATGAACTTAGATTTTACAAAAA-T--TGG-AAAAAAGCTTTTCTTGCGA
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGA
* * * * ** * * *
1376773 AACCAAAGCACCAACATCAGGTATCCAAAAGAGAAGAGAATGTCTATGGTGCCTAATCCTCAAAA
196 AACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA
* * * * * *
1376838 GAATGGCGATTACTATGTTTAGGATACCCAATGTTGGTGTCATATTTAAG-GTACAAACTTTGAA
261 GAATGGGGA-TAGTATG---A-GA-A-TCATTGTT--TGTCTTATTTAAGAG-ACAAACTTTGAT
* * * *
1376902 TCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCACCAATGTAATATATCCT
316 TCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * * **
1376967 AATG-AAGAGAATGTG-TTTTAGATTCCCAATGC-TGAAAATAATGGATACTATTATGAGAATCG
381 AATGAAAG-GAATGTGTTTTTGGA-TCCCAAT-CTTGAAAAGAATGGAGATTGTTGCGAGAATCG
* *
1377029 ATGCTTATCTTATTTAAGGAATGAACTTTGATT
443 ATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* ** * * * *
1377062 TTGAA-GAAAATAGGGTGAAGAAAAGATTTGCATGGAAAACAAAATCATCAATATCATTTATCCC
1 TT-AAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
1377126 AATGAGGGGAATGTGTTTATAGCGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATG
65 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
1377190 TTTGTCTCATTTGCGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAA-CCTTTCCTGC
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGT-GGAAAAAAAGCCTTTCTTGC
* * * * * * * *** * *
1377253 AAAACCAAAGCACCAACATCAGGTATCCTAAAGAGGAGACAAAGTCCGTGGTGCCTACTCCTGAA
194 GAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* * ** * *
1377318 AAGAATGGGGATTTCTATGTTTAGGGTACCCGA-TGTTGGTTTCTTATTTAAGAGACAAATTTTG
259 AAGAATGGGGA----TA-GTAT-GAG-AATC-ATTGTT--TGTCTTATTTAAGAGACAAACTTTG
* * * *
1377382 ATTCTATAAAAAACGAG-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCCATGTCATGTA-
314 ATTCTATCAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * * * * *
1377445 CCTTAACG-AAGGTAATGCGTTTTAGGTTCCCAATGC-TGAAAATAATGGACACTGTTACAAGAA
378 CC-TAATGAAAGG-AATGTGTTTTTGGATCCCAAT-CTTGAAAAGAATGGAGATTGTTGCGAGAA
* **
1377508 CCGATGCTTGTCTTATTTAAAAGATGAACTTTGATT
440 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
1377544 TTAAAGAAAATAAGGCAAAGAGAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
1377609 ATGAGAAGAATGTGTTTACCA-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
66 ATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
1377673 TTTCTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GAAAAACAAGCCTTTCTTGC
130 TTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAA-AAGCCTTTCTTGC
* * * * *
1377737 -AAATCCAAAGCACTAATATCGGGTATCCTAATGAGAAGGCTATGTTTGTTGTGCCTATTCTTGA
194 GAAA-CCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGA
* * * * *
1377801 AATGAATGGGGAACAGTATGAGTATTCA-TGTTCGTCTTATTTAAGAGGC--A--TTGATTCTAT
258 AAAGAATGGGG-ATAGTATGAG-AATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
1377861 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-A-A-C----C--CAATGTCATGTATCCTACTGA
321 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
1377917 AGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATACTTGT
386 AAGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGT
* * *
1377982 CTTATTTAAGTGATGAACTTCGACT
451 CTTATTTAAGGGATGAACTTTGATT
* * * * * *
1378007 TCATGGAAAATAGGGCAAAGAAAAGATATCCATGCAAAAGAAAATCATTAATATCATTTATCCTA
1 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * * * *
1378072 ATGAAGAGAATGTGTTTATAGTGCTTAATCACAGAATGAAAGAAGATCATTTCTTGAATCCATGT
66 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* ** * * * * * * * * *
1378137 TTATCTCATTCAAGGTAGGAATTTCGGCTTTGCAAAATTTGGTGGAAAAAAAGCCTTTCTTGCAA
131 TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGA
*
1378202 AATCAAAG
196 AACCAAAG
1378210 TGTTTGGATC
Statistics
Matches: 9323, Mismatches: 1831, Indels: 1258
0.75 0.15 0.10
Matches are distributed among these distances:
462 2 0.00
463 249 0.03
464 22 0.00
465 126 0.01
466 124 0.01
467 4 0.00
469 2 0.00
470 87 0.01
471 17 0.00
472 295 0.03
473 430 0.05
474 1303 0.14
475 1504 0.16
476 1347 0.14
477 825 0.09
478 143 0.02
479 107 0.01
480 573 0.06
481 34 0.00
482 581 0.06
483 439 0.05
484 124 0.01
485 10 0.00
486 3 0.00
487 2 0.00
488 7 0.00
489 3 0.00
490 3 0.00
491 7 0.00
492 31 0.00
493 53 0.01
494 55 0.01
495 24 0.00
496 107 0.01
497 16 0.00
498 66 0.01
499 12 0.00
500 2 0.00
501 2 0.00
502 1 0.00
503 1 0.00
504 7 0.00
505 1 0.00
506 3 0.00
507 2 0.00
509 2 0.00
511 1 0.00
513 1 0.00
514 9 0.00
515 9 0.00
516 7 0.00
517 6 0.00
518 1 0.00
519 1 0.00
520 9 0.00
521 6 0.00
522 5 0.00
523 8 0.00
524 16 0.00
525 24 0.00
526 18 0.00
527 14 0.00
528 1 0.00
529 8 0.00
530 21 0.00
531 3 0.00
532 8 0.00
533 12 0.00
534 9 0.00
535 19 0.00
536 6 0.00
537 22 0.00
538 10 0.00
539 3 0.00
540 14 0.00
541 5 0.00
542 16 0.00
543 8 0.00
544 2 0.00
545 2 0.00
546 9 0.00
547 2 0.00
548 10 0.00
549 20 0.00
550 7 0.00
551 1 0.00
552 13 0.00
553 12 0.00
554 19 0.00
555 7 0.00
556 4 0.00
557 20 0.00
558 18 0.00
559 29 0.00
560 9 0.00
561 3 0.00
562 10 0.00
563 14 0.00
564 3 0.00
565 7 0.00
566 9 0.00
567 7 0.00
568 1 0.00
569 3 0.00
571 1 0.00
572 10 0.00
573 3 0.00
574 1 0.00
575 1 0.00
576 4 0.00
577 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
TTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGA
AACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA
GAATGGGGATAGTATGAGAATCATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
ATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
ATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTAT
TTAAGGGATGAACTTTGATT
Done.