Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold232
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2516017
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.33
Warning! 28201 characters in sequence are not A, C, G, or T
File 9 of 16
Found at i:1371525 original size:317 final size:315
Alignment explanation
Indices: 1371049--1371792 Score: 929
Period size: 317 Copynumber: 2.3 Consensus size: 315
1371039 TTGATTTTAT
* * * *
1371049 CAAAAA-TGGTGGAAAGAAAAG-CTTTTCCTACGACACCAAAGCACCAATTTCAAGTATCCTAAT
1 CAAAAATTGGTGGAAA-AAAAGCCTTTT-TTACGAAACCAAAGCACCAATATCAGGTATCCTAAT
* * * * * * * * * * *
1371112 CAAAGGAATGTGTTTTTGGATCCCAATCGTGAAAAGAATAGAGATTATTGTGAGAATCGATGCTT
64 GAAA-GACTATGTTTATGGA-CCCAATCCTGAAAATAATGGGGATTACTGCGAGAATCGATGCCT
* * * *
1371177 GTCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATAAGTCAAAGAAAATATTTTCATGCATA
127 GTCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCACA
* *
1371242 GGAAAATCATCAAAATTTTTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATA
192 AGAAAATCATCAAAATTTTTTATCCTAATGAGGACAATATGTTTATAGTGCCTAATCACAAAA-A
* * * **
1371307 -AATGAAGCTCATTACTAAAATCCATGTTTGTCTCATTTGCGGCACAAACTTAGACTCTA
256 GAATGAAGATCACTACTAAAACCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTCTA
* *
1371366 CAAAAATTGGAGGAAAAAAAGCCTTTTTTACGAAACCAAAGCACCAATATCGGGTATCCTAATGA
1 CAAAAATTGGTGGAAAAAAAGCCTTTTTTACGAAACCAAAGCACCAATATCAGGTATCCTAATGA
** *
1371431 GAAGACTATGTTTATGGCACCCAATTTTGAAAATAATGGGGATTGCTGCGAGAATC-ATTGCCTG
66 -AAGACTATGTTTATGG-ACCCAATCCTGAAAATAATGGGGATTACTGCGAGAATCGA-TGCCTG
* * *
1371495 TCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCACAA
128 TCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCACAA
* * *
1371560 GAAAATCATCAATATTTTTTATCCTAATGAGGACAATGTGTTTATAGTGTCTAATCACAAAAAGA
193 GAAAATCATCAAAATTTTTTATCCTAATGAGGACAATATGTTTATAGTGCCTAATCACAAAAAGA
* **
1371625 ATGAAGATCACTACTAGAACCCATGTTTGTCTCATTTGAAGCATGAACTTAGACTCTA
258 ATGAAGATCACTACTAAAACCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTCTA
* * * *
1371683 CAAAAATTAGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCTGGTATCCTAATGA
1 CAAAAATTGGTGGAAAAAAAGCCTTTTTTACGAAACCAAAGCACCAATATCAGGTATCCTAATGA
* * * * *
1371748 CAAAACTATTTTTATGGTGCCTAATCCAGAAAATAATGGGGATTA
66 -AAGACTATGTTTATGG-ACCCAATCCTGAAAATAATGGGGATTA
1371793 GCATGAGAAT
Statistics
Matches: 367, Mismatches: 54, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
316 2 0.01
317 349 0.95
318 16 0.04
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (315 bp):
CAAAAATTGGTGGAAAAAAAGCCTTTTTTACGAAACCAAAGCACCAATATCAGGTATCCTAATGA
AAGACTATGTTTATGGACCCAATCCTGAAAATAATGGGGATTACTGCGAGAATCGATGCCTGTCT
TATTTAAGAGATAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCACAAGAA
AATCATCAAAATTTTTTATCCTAATGAGGACAATATGTTTATAGTGCCTAATCACAAAAAGAATG
AAGATCACTACTAAAACCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTCTA
Found at i:1371889 original size:317 final size:316
Alignment explanation
Indices: 1371178--1371915 Score: 835
Period size: 317 Copynumber: 2.3 Consensus size: 316
1371168 TCGATGCTTG
* * * * * *
1371178 TCTTATTTAAGAGATAAACTTTAATTTTAAGGAAAATA-AGTCAAAGAAAATATTTTCATGCATA
1 TCTTATTTAAGAGACAAACTTTGATTTTAAGAAAAATAGAG-CAAAGAAAAGATTTCCATGCACA
** * * *
1371242 GGAAAATCATCAAAATTTTTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATA
65 ACAAAACCATCAATATTTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATA
* * * **
1371307 AATGAAGCTCATTACTAAAATCCATGTTTGTCTCATTTGCGGCACAAACTTAGACTCTACAAAAA
130 AATGAAGATCACTACTAAAACCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTCTACAAAAA
* * * *
1371372 TTGGAGGAAAAAAAGCCTTTTTTACGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGAC
195 TTAGAGGAAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGGGTATCCTAATGACAAAAC
*** * *
1371437 TATGTTTATGGCACCCAATTTTGAAAATAATGGGGATTGCTGCGAGAATCATTGCCTG
260 TATGTTTATGGCACCCAATCCAGAAAATAATGGGGATTGCT-CGAGAATCATAGCCTC
* * * *
1371495 TCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCACAA
1 TCTTATTTAAGAGACAAACTTTGATTTTAAGAAAAATAGAGCAAAGAAAAGATTTCCATGCACAA
* * * *
1371560 GAAAATCATCAATATTTTTTATCCTAATGAGGACAATGTGTTTATAGTGTCTAATCACAAAA-AG
66 CAAAACCATCAATATTTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATA-
* **
1371624 AATGAAGATCACTACTAGAACCCATGTTTGTCTCATTTGAAGCATGAACTTAGACTCTACAAAAA
130 AATGAAGATCACTACTAAAACCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTCTACAAAAA
* * *
1371689 TTAGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCTGGTATCCTAATGACAAAAC
195 TTAGAGGAAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGGGTATCCTAATGACAAAAC
* ** * **
1371754 TATTTTTATGGTGCCTAATCCAGAAAATAATGGGGATTAGCAT-GAGAATTCA-AGTTTC
260 TATGTTTATGGCACCCAATCCAGAAAATAATGGGGATT-GC-TCGAGAA-TCATAGCCTC
* * * * *
1371812 TCTTATTTATGAGACAAACTTTGATTTTATCA-AAAAAT-GAAG-AAATAAAAGCTTTTCTTGCG
1 TCTTATTTAAGAGACAAACTTTGATTTTA--AGAAAAATAG-AGCAAAGAAAAGATTTCCATGC-
* ** * *
1371874 AC-ACCAAACCATCAATATCATGTATCCTAATGATGAGAATGT
62 ACAACAAAACCATCAATATTTTTTATCCTAATGAGGAGAATGT
1371916 ATTTTTGGAT
Statistics
Matches: 358, Mismatches: 54, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
316 1 0.00
317 341 0.95
318 14 0.04
319 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (316 bp):
TCTTATTTAAGAGACAAACTTTGATTTTAAGAAAAATAGAGCAAAGAAAAGATTTCCATGCACAA
CAAAACCATCAATATTTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAA
ATGAAGATCACTACTAAAACCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTCTACAAAAAT
TAGAGGAAAAAAAGCCTTTCTTACGAAACCAAAGCACCAATATCGGGTATCCTAATGACAAAACT
ATGTTTATGGCACCCAATCCAGAAAATAATGGGGATTGCTCGAGAATCATAGCCTC
Found at i:1376098 original size:948 final size:949
Alignment explanation
Indices: 1374264--1378209 Score: 4986
Period size: 948 Copynumber: 4.2 Consensus size: 949
1374254 GCCTTTATCC
* * * * *
1374264 ATCATTTATCCTAATGAGGAGAATATGTTTATAGCGCCTAATCACAAAATCAATAAAGATCATTA
1 ATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * *
1374329 CCAGAATCCATCTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAATA
66 CTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAA
* * * * *
1374394 GCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAACGAGAAGACTATGATTAC-AGTC
130 ACCTTTCTTGCAAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATG-TTACTAGTG
* * * * *
1374458 CCTAAACTTGAAAA-AATGGGGAATAGTATTAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
194 CCTAATCTTGAAAAGAATAGGGAATAGTATAAGTGTACATGTTTGTCTTATTTAAGAGACAAACT
* * * * * *
1374522 TTGATTCTCTAAAAAATGGAGGAAAGAAAAGCTTTTCTTACTACACCAAAGCAT-AATGTCTTGT
259 TTGACTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * *
1374586 ATCCTAATGATGGGAATGTGTTTTTGGATT-CCAGTCTTGAAAAGAATGGAGATTGTTATC-AGA
324 ATCCTAATGAAGGGAATGTGTTTTAGG-TTCCCAATCTTGAAAAGAATGGAGATTGTTA-CGAGA
* * *
1374649 ATCGATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCATGTAA
387 ATCGATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* *
1374714 AA-AATATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAACGCCTAATCACAAAAT
452 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAT
* *
1374778 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCATGAACTTAGACTTTGCAAAA
517 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCACGAACTTAGACTTTACAAAA
*
1374843 ATTGGTGAAAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAGGAGAAGA
582 ATTGGTG-AAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGA
*
1374908 CAATGTCTATGGTACCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGG
646 CAATGTCTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGG
* *
1374973 TTTCTTATTTAAGAGACAAACTTTGATTCTTTAAAAAATGG-GAGAAAAAAAAGCTTTTCTTGCG
711 TTTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCG
* * *
1375037 ACGCCAAAGCACCAATGTCATGTACCCTAATGATGGGAATGTATTTTAGGTTCCCAATGCTAAAA
775 ACACCAAAGCACCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATGCTAAAA
* * * *
1375102 ATAATGGAGATTGTTACGA-AATTGATATTTGTCTTACTTAACCGATGAACTTTGATTTTAAAGA
840 ATAATGGAGACTGTTACGAGAATCGATACTTGTCTTACTTAAGCGATGAACTTTGATTTTAAAGA
1375166 AAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
905 AAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * * *
1375211 ATCATTTATCTTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTG
1 ATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
*
1375276 CTAGAAACCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
* * *
1375341 CCTTTTTTGCAAAACCGAAGCACCAATATCGGGTATCTTAATGAGAAGACTATGTTACTAGTGCC
131 CCTTTCTTGCAAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTACTAGTGCC
*
1375406 TAATCATGAAAAGAATAGGGAATAGTATAAGTGTACATGTTTGTCTTATTTAAGAGACAAACTTT
196 TAATCTTGAAAAGAATAGGGAATAGTATAAGTGTACATGTTTGTCTTATTTAAGAGACAAACTTT
* *
1375471 GACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTAT
261 GACTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * *
1375536 TCTAATGAAGGGAATGTGTTTT-TGTATCCCAGTCTTGAAAAGAATGGAGATTGTTATGAGAATC
326 CCTAATGAAGGGAATGTGTTTTAGGT-TCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
* * *
1375600 GATATTTAAGGGGTAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAGGTAAAA-
390 GATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* *
1375664 AATATCATCAATATCATCTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAA
455 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAA
1375729 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCACGAACTTAGACTTTACAAAAATT
520 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCACGAACTTAGACTTTACAAAAATT
1375794 GGTGAAAAAAAGGCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAA
585 GGTGAAAAAAA-GCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAA
1375859 TGTCTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTT
649 TGTCTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTT
*
1375924 CTTATTTAAGAGACAAACTTTGATTCTTTAAAAAATGG-GAGAAAGAAAAGCTTTTCTTGCGACA
714 CTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACA
*
1375988 CCAAAGCACCAATGTCATGTACCCTAATGATGGGAATGTGTTTTAGGTTCCCAATGCTAAAAATA
778 CCAAAGCACCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATGCTAAAAATA
*
1376053 ATGGAGACTGTTACGA-AATCGATATTTGTCTTACTTAAGCGATGAACTTTGATTTTAAAGAAAA
843 ATGGAGACTGTTACGAGAATCGATACTTGTCTTACTTAAGCGATGAACTTTGATTTTAAAGAAAA
1376117 TAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
908 TAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * * * *
1376159 ATCATTTATCTTAATAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTG
1 ATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
1376224 CTAGAAACCATGTTTGTCTCATTCGAGGCACGAACTTAAACTTTACAAAAATTGGTGGAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
* * *
1376289 CCTTTTTTGCAAAACCGAAGCACCAATATCGGGTATCTTAATGAGAAGACTATGTTACTAGTGCC
131 CCTTTCTTGCAAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTACTAGTGCC
1376354 TAATCTTGAAAAGAATAGGGAATAGTATAAGTGTACATGTTTGTCTTATTTAAGAGACAAACTTT
196 TAATCTTGAAAAGAATAGGGAATAGTATAAGTGTACATGTTTGTCTTATTTAAGAGACAAACTTT
* *
1376419 GACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTAT
261 GACTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * *
1376484 TCTAATGAAGGGAATGTGTTTTCGGTTCCCAATCTTGAAAAGAATGGATATTGTTGCGAGAATCG
326 CCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* * * * * *
1376549 ATGCTTGTCTTATTTAAGGGA-AGAGCTTTGATATTAAGTAAAATAGGGCAAAGCAAAGATTTTC
391 A---------TATTTAAGGGATA-AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
* * * * * * *
1376613 ATGCAAAAGAAAATCGTCAATACCATATATCCTAATGAGGAGTATGTGTTTGTAGTGTCTAATCA
446 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCA
* * * * *
1376678 CAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGTGGTATGAACTTAGATTTT
511 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCACGAACTTAGACTTT
* * * *
1376743 ACAAAAATT-G-G-AAAAAAGCTTTTCTTGCGAAACCAAAGCACCAACATCAGGTATCCAAAAGA
576 ACAAAAATTGGTGAAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGA
* * * * *
1376805 GAAGAGAATGTCTATGGTGCCTAATCCTCAAAAGAATGGCGATTACTATGTTTAGGATACCCAAT
641 GAAGACAATGTCTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAAT
* * * *
1376870 GTTGGTGTCATATTTAAG-GTACAAACTTTGAATCTATCAAAAATGGTGGAAAGAAAAGCTTTTC
706 GTTGGTTTCTTATTTAAGAG-ACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTC
* * * * * *
1376934 TTGTGACACCAAAGCACCAATGTAATATATCCTAATGAAGAGAATGTGTTTTAGATTCCCAATGC
770 TTGCGACACCAAAGCACCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATGC
* * * * * * *
1376999 TGAAAATAATGGATACTATTATGAGAATCGATGCTTATCTTATTTAAG-GAATGAACTTTGATTT
835 TAAAAATAATGGAGACTGTTACGAGAATCGATACTTGTCTTACTTAAGCG-ATGAACTTTGATTT
* * ** * * *
1377063 TGAAGAAAATAGGGTGAAGAAAAGATTTGCATGGAAAACAAAATCATCAAT
899 TAAAGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
* * * *
1377114 ATCATTTATCCCAATGAGGGGAATGTGTTTATAGCGCCTAATCAC-AAATGAATGAAGATCATTA
1 ATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
1377178 CTAGAATCCATGTTTGTCTCATTTGCGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAA
66 CTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAA
* * * * * * * * *
1377242 ACCTTTCCTGCAAAACCAAAGCACCAACATCAGGTATCCTAAAGAGGAGACAAAG-TCCGTGGTG
130 ACCTTTCTTGCAAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTAC-TAGTG
* * * * * * *
1377306 CCTACTCCTGAAAAGAATGGGGATTTCTATGT-TTAGGGTACCCGATGTTGGTTTCTTATTTAAG
194 CCTAATCTTGAAAAGAATAGGGA---ATA-GTATAAGTGTA--C-ATGTT--TGTCTTATTTAAG
* * * *
1377370 AGACAAATTTTGATTCTATAAAAAACGAG-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACC
250 AGACAAACTTTGACTCTATAAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * *
1377434 CATGTCATGTA-CCTTAACGAAGGTAATGCGTTTTAGGTTCCCAATGC-TGAAAATAATGGACAC
314 AATGTCATGTATCC-TAATGAAGGGAATGTGTTTTAGGTTCCCAAT-CTTGAAAAGAATGGAGAT
* * ** * *
1377497 TGTTACAAGAACCGATGCTTGTCTTATTTAAAAGATGAACTTTGATTTTAAAGAAAATAAGGCAA
377 TGTTACGAG-A---AT-C--G--ATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAA
* *
1377562 AGAGAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA
433 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * **
1377627 CCA-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGCA
498 -TAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCA
* * *
1377691 CGAACTTAGACTTTACAAAAATTGGTGAAAAACAAGCCTTTCTTGCAAATCCAAAGCACTAATAT
562 CGAACTTAGACTTTACAAAAATTGGTGAAAAA-AAGCCTTTCTTGCAAAACCAAAGCACCAACAT
* * * * * * * *
1377756 CGGGTATCCTAATGAGAAGGCTATGTTTGTTGTGCCTATTCTTGAAATGAATGGGGA--AC-A-G
626 CGGGTATCCTAAAGAGAAGACAATGTCTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATG
* * ** * * * *
1377817 --TATGAGTATTC-ATGTTCG--TCTTATTTAAGAGGC--A--TTGATTCTATCAAAAACGGTGG
691 TTTAGGA-CACCCAATGTTGGTTTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGG
* *
1377873 AAAGAAAAGCTTTTCTT--G----C-AA-C-CCAATGTCATGTATCCTACTGAAGGGAATGTGTT
755 AAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTACCCTAATGAAGGGAATGTGTT
* * * * * * *
1377929 TTTGGTTCCTAAT-CTTGAAAAGAATGGAGATTGTTACGAGAATCGATACTTGTCTTATTTAAGT
820 TTAGGTTCCCAATGC-TAAAAATAATGGAGACTGTTACGAGAATCGATACTTGTCTTACTTAAGC
* * * ** * * * *
1377993 GATGAACTTCGACTTCATGGAAAATAGGGCAAAGAAAAGATATCCATGCAAAAGAAAATCATTAA
884 GATGAACTTTGATTTTAAAGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAA
1378058 T
949 T
* * *
1378059 ATCATTTATCCTAATGAA-GAGAATGTGTTTATAGTGCTTAATCACAGAATGAAAGAAGATCATT
1 ATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * * * * * * * *
1378123 TCTTGAATCCATGTTTATCTCATTCAAGGTAGGAATTTCGGCTTTGCAAAATTTGGTGGAAAAAA
65 ACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAA
*
1378188 AGCCTTTCTTGCAAAATCAAAG
130 A-CCTTTCTTGCAAAACCAAAG
1378210 TGTTTGGATC
Statistics
Matches: 2667, Mismatches: 272, Indels: 120
0.87 0.09 0.04
Matches are distributed among these distances:
944 1 0.00
945 175 0.07
946 134 0.05
947 239 0.09
948 981 0.37
949 2 0.00
952 1 0.00
953 12 0.00
954 407 0.15
955 123 0.05
956 3 0.00
957 60 0.02
958 130 0.05
959 2 0.00
960 15 0.01
961 4 0.00
962 291 0.11
963 6 0.00
964 3 0.00
965 4 0.00
966 72 0.03
967 1 0.00
969 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (949 bp):
ATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
CTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
CCTTTCTTGCAAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTACTAGTGCC
TAATCTTGAAAAGAATAGGGAATAGTATAAGTGTACATGTTTGTCTTATTTAAGAGACAAACTTT
GACTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
ATATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTCGCACGAACTTAGACTTTACAAAAATTG
GTGAAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATG
TCTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTTCT
TATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
AAGCACCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATGCTAAAAATAATG
GAGACTGTTACGAGAATCGATACTTGTCTTACTTAAGCGATGAACTTTGATTTTAAAGAAAATAG
AGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAAT
Found at i:1377430 original size:482 final size:476
Alignment explanation
Indices: 1374264--1378209 Score: 4421
Period size: 482 Copynumber: 8.3 Consensus size: 476
1374254 GCCTTTATCC
* * * *
1374264 ATCATTTATCCTAATGAGGAGAATATGTTTATAGCGCCTAATCACAAAATCAATAAAGATCATTA
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
1374329 CCAGAATCCATCTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAATA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAA
* * * * * * * * *
1374394 GCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAACGAGAAGACTATGATTAC-AGTC
130 ACCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATG--TCCTGGTG
* **
1374458 CCTAAACTTGAAAA-AATGGGGAA-TAGTATTA--GTATTCATGTT--TGTCTTATTTAAGAGAC
193 CCTAATCTTGAAAAGAATGGGGAACTAGT-TTAGGGTACCCATGTTGGTGTCTTATTTAAGAGAC
* * * * *
1374517 AAACTTTGATTCTCTAAAAAATGGAGGAAAGAAAAGCTTTTCTTACTACACCAAAGCA-TAATGT
257 AAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGT
* * * *
1374581 CTTGTATCCTAATGATGGGAATGTGTTTTTGGATT-CCAGTCTTGAAAAGAATGGAGATTGTTAT
322 CATGTATCCTAATGAAGGGAATGTGTTTTAGG-TTCCCAATCTTGAAAAGAATGGAGATTGTTA-
* *
1374645 C-AGAATCGA---------TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGAAAAGAAA
385 CGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAA
* *
1374700 AGATTTCCATGTAAAA-AATATCATCAAT
448 AGATTTCCATGCAAAAGAAAATCATCAAT
**
1374728 ATCATTTATCCTAATGAGGAGAATGTGTTTATAACGCCTAATCACAAAATGAATGAAGATCATTA
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
** * * *
1374793 CTAGAATCCATGTTTGTCTCATTTGTCGCATGAACTTAGACTTTGCAAAAATTGGTGAAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
* * *
1374858 GCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAGGAGAAGACAATGTCTATGGTAC
131 -CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTC-CTGGTGC
** *
1374923 CTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTTCTTATTTAAGAG
194 CTAATCTTGAAAAGAATGGGGA--ACTA-GTTTAGGGTACCC-ATGTTGGTGTCTTATTTAAGAG
* * *
1374988 ACAAACTTTGATTCTTTAAAAAATGG-GAGAAAAAAAAGCTTTTCTTGCGACGCCAAAGCACCAA
255 ACAAACTTTGATTCTATAAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAA
* * * * *
1375052 TGTCATGTACCCTAATGATGGGAATGTATTTTAGGTTCCCAATGC-TAAAAATAATGGAGATTGT
319 TGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAAT-CTTGAAAAGAATGGAGATTGT
* ** * * *
1375116 TACGA-AATTGATATTTGTCTTACTTAACCGATGAACTTTGATTTTAAAGAAAATAGAGCAAAGA
383 TACGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTT-AAGAAAATAGGGCAAAGA
*
1375180 AAAGATTTTCATGCAAAAGAAAATCATCAAT
446 AAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * *
1375211 ATCATTTATCTTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTG
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
1375276 CTAGAAACCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
* * * * * * * *
1375341 CCTTTTTTGCAAAACCGAAGCACCAATATCGGGTATCTTAATGAGAAGACTATGTTACTAGTGCC
131 CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATG-TCCTGGTGCC
* * * *
1375406 TAATCATGAAAAGAATAGGGAA-TAGTATAAGTGTA--CATGTT--TGTCTTATTTAAGAGACAA
195 TAATCTTGAAAAGAATGGGGAACTAGT-TTAGGGTACCCATGTTGGTGTCTTATTTAAGAGACAA
* * * *
1375466 ACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCA
259 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCA
* * * *
1375531 TGTATTCTAATGAAGGGAATGTGTTTT-TGTATCCCAGTCTTGAAAAGAATGGAGATTGTTATGA
324 TGTATCCTAATGAAGGGAATGTGTTTTAGGT-TCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * *
1375595 GAATCGA---------TATTTAAGGGGTAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
388 GAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGA
* * *
1375651 TTTCCAGGTAAAA-AATATCATCAAT
451 TTTCCATGCAAAAGAAAATCATCAAT
* *
1375676 ATCATCTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAGATCATTA
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
**
1375741 CTAGAATCCATGTTTGTCTCATTTGTCGCACGAACTTAGACTTTACAAAAATTGGT-GAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
*
1375805 GGCCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTCTATGGTG
131 --CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTC-CTGGTG
** *
1375870 CCTAATCTTGAAAAGAATGGGGATTACTATGTTTAGGACACCCAATGTTGGTTTCTTATTTAAGA
193 CCTAATCTTGAAAAGAATGGGGA--ACTA-GTTTAGGGTACCC-ATGTTGGTGTCTTATTTAAGA
*
1375935 GACAAACTTTGATTCTTTAAAAAATGG-GAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCA
254 GACAAACTTTGATTCTATAAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCA
* * * * *
1375999 ATGTCATGTACCCTAATGATGGGAATGTGTTTTAGGTTCCCAATGC-TAAAAATAATGGAGACTG
318 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAAT-CTTGAAAAGAATGGAGATTG
** * *
1376063 TTACGA-AATCGATATTTGTCTTACTTAAGCGATGAACTTTGATTTTAAAGAAAATAGAGCAAAG
382 TTACGAGAATCGATGCTTGTCTTATTTAAG-GATGAACTTTGATTTT-AAGAAAATAGGGCAAAG
*
1376127 AAAAGATTTTCATGCAAAAGAAAATCATCAAT
445 AAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * * *
1376159 ATCATTTATCTTAATAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTG
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
1376224 CTAGAAACCATGTTTGTCTCATTCGAGGCACGAACTTAAACTTTACAAAAATTGGTGGAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
* * * * * * * *
1376289 CCTTTTTTGCAAAACCGAAGCACCAATATCGGGTATCTTAATGAGAAGACTATGTTACTAGTGCC
131 CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATG-TCCTGGTGCC
* * *
1376354 TAATCTTGAAAAGAATAGGGAA-TAGTATAAGTGTA--CATGTT--TGTCTTATTTAAGAGACAA
195 TAATCTTGAAAAGAATGGGGAACTAGT-TTAGGGTACCCATGTTGGTGTCTTATTTAAGAGACAA
* * * *
1376414 ACTTTGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCA
259 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCA
* * * *
1376479 TGTATTCTAATGAAGGGAATGTGTTTTCGGTTCCCAATCTTGAAAAGAATGGATATTGTTGCGAG
324 TGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
* * * *
1376544 AATCGATGCTTGTCTTATTTAAGGGAAGAGCTTTGATATTAAGTAAAATAGGGCAAAGCAAAGAT
389 AATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAAG-AAAATAGGGCAAAGAAAAGAT
* *
1376609 TTTCATGCAAAAGAAAATCGTCAAT
452 TTCCATGCAAAAGAAAATCATCAAT
* * * * *
1376634 ACCATATATCCTAATGAGGAGTATGTGTTTGTAGTGTCTAATCACAAAATGAATGAAGATCATTA
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * * *
1376699 CTAGAATCTATGTTTGTCTCATTTGTGGTATGAACTTAGATTTTACAAAAA-T--TGGAAAAAAG
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
* * * * * *
1376761 CTTTTCTTGCGAAACCAAAGCACCAACATCAGGTATCCAAAAGAGAAGAGAATGTCTATGGTGCC
131 CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTC-CTGGTGCC
* * * * *
1376826 TAATCCTCAAAAGAATGGCGATTACTATGTTTAGGATACCCAATGTTGGTGTCATATTTAAG-GT
195 TAATCTTGAAAAGAATGGGGA--ACTA-GTTTAGGGTACCC-ATGTTGGTGTCTTATTTAAGAG-
* * *
1376890 ACAAACTTTGAATCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCACCAAT
255 ACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAAT
* * * * * * * *
1376955 GTAATATATCCTAATGAAGAGAATGTGTTTTAGATTCCCAATGC-TGAAAATAATGGATACTATT
320 GTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAAT-CTTGAAAAGAATGGAGATTGTT
* * **
1377019 ATGAGAATCGATGCTTATCTTATTTAAGGAATGAACTTTGATTTTGAAGAAAATAGGGTGAAGAA
384 ACGAGAATCGATGCTTGTCTTATTTAAGG-ATGAACTTTGATTTT-AAGAAAATAGGGCAAAGAA
* * *
1377084 AAGATTTGCATGGAAAACAAAATCATCAAT
447 AAGATTTCCATGCAAAAGAAAATCATCAAT
* * *
1377114 ATCATTTATCCCAATGAGGGGAATGTGTTTATAGCGCCTAATCAC-AAATGAATGAAGATCATTA
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
*
1377178 CTAGAATCCATGTTTGTCTCATTTGCGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAA
* * * *
1377242 ACCTTTCCTGCAAAACCAAAGCACCAACATCAGGTATCCTAAAGAGGAGACAAAGTCCGTGGTGC
130 ACCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTCC-TGGTGC
* * * *
1377307 CTACTCCTGAAAAGAATGGGGATTTCTATGTTTAGGGTACCCGATGTTGGTTTCTTATTTAAGAG
194 CTAATCTTGAAAAGAATGGGGA--ACTA-GTTTAGGGTACCC-ATGTTGGTGTCTTATTTAAGAG
* * *
1377372 ACAAATTTTGATTCTATAAAAAACGAG-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCCA
255 ACAAACTTTGATTCTATAAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAA
* * * * * *
1377436 TGTCATGTA-CCTTAACGAAGGTAATGCGTTTTAGGTTCCCAATGC-TGAAAATAATGGACACTG
319 TGTCATGTATCC-TAATGAAGGGAATGTGTTTTAGGTTCCCAAT-CTTGAAAAGAATGGAGATTG
* * * *
1377499 TTACAAGAACCGATGCTTGTCTTATTTAAAAGATGAACTTTGATTTTAAAGAAAATAAGGCAAAG
382 TTACGAGAATCGATGCTTGTCTTATTT-AAGGATGAACTTTGATTTT-AAGAAAATAGGGCAAAG
*
1377564 AGAAGATTTCCATGCAAAAGAAAATCATCAAT
445 AAAAGATTTCCATGCAAAAGAAAATCATCAAT
* *
1377596 ATCATTTATCCTAATGAGAAGAATGTGTTTACCA-TGCCTAATCACAAAATGAATGAAGATCATT
1 ATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATT
*
1377660 ACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GAAAAAC
65 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAA-
* * * * * * *
1377724 AAGCCTTTCTTGCAAATCCAAAGCACTAATATCGGGTATCCTAATGAGAAGGCTATGT-TTGTTG
129 AA-CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTCCTG--G
* * * * ** * *
1377788 TGCCTATTCTTGAAATGAATGGGGAAC-AGTAT-GAGTATTCATGTT--CGTCTTATTTAAGAGG
191 TGCCTAATCTTGAAAAGAATGGGGAACTAGTTTAGGGTACCCATGTTGGTGTCTTATTTAAGAGA
* *
1377849 C--A--TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT--G----C-AA-C-CCAATG
256 CAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATG
* * *
1377901 TCATGTATCCTACTGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGTTAC
321 TCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAC
* * * * *
1377966 GAGAATCGATACTTGTCTTATTTAAGTGATGAACTTCGACTTCATGGAAAATAGGGCAAAGAAAA
386 GAGAATCGATGCTTGTCTTATTTAAG-GATGAACTTTGATTTTA-AGAAAATAGGGCAAAGAAAA
* *
1378031 GATATCCATGCAAAAGAAAATCATTAAT
449 GATTTCCATGCAAAAGAAAATCATCAAT
* * * * *
1378059 ATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCTTAATCACAGAATGAAAGAAGATCATTT
1 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * ** * * * * * * *
1378124 CTTGAATCCATGTTTATCTCATTCAAGGTAGGAATTTCGGCTTTGCAAAATTTGGTGGAAAAAAA
66 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
*
1378189 GCCTTTCTTGCAAAATCAAAG
131 -CCTTTCTTGCAAAACCAAAG
1378210 TGTTTGGATC
Statistics
Matches: 2965, Mismatches: 409, Indels: 217
0.83 0.11 0.06
Matches are distributed among these distances:
462 6 0.00
463 260 0.09
464 192 0.06
465 134 0.05
466 123 0.04
467 1 0.00
468 6 0.00
469 8 0.00
470 5 0.00
471 8 0.00
472 117 0.04
473 86 0.03
474 442 0.15
475 190 0.06
476 27 0.01
477 3 0.00
478 18 0.01
479 81 0.03
480 243 0.08
481 9 0.00
482 598 0.20
483 323 0.11
484 85 0.03
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAA
CCTTTCTTGCAAAACCAAAGCACCAACATCGGGTATCCTAAAGAGAAGACAATGTCCTGGTGCCT
AATCTTGAAAAGAATGGGGAACTAGTTTAGGGTACCCATGTTGGTGTCTTATTTAAGAGACAAAC
TTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATG
TATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAA
TCGATGCTTGTCTTATTTAAGGATGAACTTTGATTTTAAGAAAATAGGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAAT
Found at i:1378522 original size:20 final size:19
Alignment explanation
Indices: 1378499--1378571 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
1378489 ACACCCAGAA
* *
1378499 GTATCGATACATTATGCTTT
1 GTATCGATACATGAT-CATT
*
1378519 GTATCAATACATGATCATT
1 GTATCGATACATGATCATT
1378538 GTATCGATACATGGA-CAATT
1 GTATCGATACAT-GATC-ATT
1378558 GTATCGATACATGA
1 GTATCGATACATGA
1378572 AACTGGCAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
19 17 0.36
20 30 0.64
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (19 bp):
GTATCGATACATGATCATT
Found at i:1385559 original size:19 final size:19
Alignment explanation
Indices: 1385517--1385589 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
1385507 ATACCCAGAA
* *
1385517 GTATCGATACATTATGCTTT
1 GTATCGATACATGAT-CATT
1385537 GTATCGATACATGATCATT
1 GTATCGATACATGATCATT
1385556 GTATCGATACATGGA-CAATT
1 GTATCGATACAT-GATC-ATT
*
1385576 TTATCGATACATGA
1 GTATCGATACATGA
1385590 AACTGGCAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.38
20 30 0.62
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (19 bp):
GTATCGATACATGATCATT
Found at i:1385642 original size:20 final size:20
Alignment explanation
Indices: 1385617--1385670 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1385607 CTACCACTGT
*
1385617 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
1385637 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
1385657 TTGTATCGATACAT
1 TTGTATCGATACAT
1385671 TGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:1387530 original size:159 final size:160
Alignment explanation
Indices: 1386419--1389473 Score: 944
Period size: 159 Copynumber: 19.3 Consensus size: 160
1386409 CCAACAATAG
* * * * * * *
1386419 GTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GAGGATTATTGTGAG
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGA-GAATAGTATGAG
* * *
1386483 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTTTATCAAAAACGGTGGAAAGAAAAGC
65 TATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGC
* * ** *
1386547 TTTTCTTGC-AACACCAACGGTTCAATGTCAT
130 TTTTCTTGCGAA-ACAAAAGCATCAATATCAT
* * * * * ** * * *
1386578 GTATCCTAAAGA-AAGGCATGTGATTTA-GGTTCCAAATGC-AAAAAATAATGGACACT-GT-TG
1 GTATCCTAATGAGAA-GAATATG-TTTATGGTGCCTAAT-CTTGAAAAGAATGGAGAATAGTATG
* * * ** * *
1386638 CAAG-AATCGATGCTTGTCTTATTTAAGAGATGAACTTT-AATGT-TA--AAGAATATAGG-GCA
63 --AGTATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGACT-TCTATCAA-AA-AT-GGTGGA
* * * * * *
1386697 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
121 AAGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * *** ** * * * *
1386737 TTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATC-ACAAAATGAATGAAG-ATCGTTTCTA
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGAATAGTAT-GA
* * * * * * *
1386800 GAATCCATATTTCTCTCATTT--GGGACATGAACTTAGACAT-TA-CAAAAATTGAG-GGAAA-A
64 GTATTCATGTTTGTCTTATTTAAGGGACA--AACTTTGACTTCTATCAAAAA-TG-GTGGAAAGA
* * * * *
1386859 CAAGCTTTTCTTGCGAATCCAAAGCACCCATATC--
125 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
** * * * *
1386893 G---GGTAATGAGAAGACTATGTTTATAGTGCCTATTCTTGAAAAGAATGGGGAATAGTATGAGT
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGAGT
* * * * *
1386955 ATTCTTGTTTGGCTTATTTAAGAGG-TAAACTTTGA-TTCTATCAAAAATAGTAGAAAGAAAAGC
66 ATTCATGTTTGTCTTATTTAAG-GGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGC
* * * *
1387018 TTTTCTTGCGACACCAAAGCAACAATTTCAT
130 TTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * * * *
1387049 GTAT-CTAAATGA-AGGGAATGTGTTTTTGCTTCCCAATCTTGAAAAGAATGGAG-ATGGT-TGC
1 GTATCCT-AATGAGA-AGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGA
* * * * * ** * *
1387110 GACAATCGATGATTGTTTTTTTTAAGGGATGAACTTTGACTTC-A-AAGAAAATAGG-GCAAAGA
64 G-TATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCA-AAAAT-GGTGGAAAGA
* * * * * *
1387172 AAAGATTTTCATGCAAAATAAAATCATCAATATTAT
125 AAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * ** ** * *
1387208 TTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAA-AAACAATCATTACT-
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TG
* * ** * * * *
1387270 AGAATCCATGTTTGTCTTATTCGAGGCACGAACTTAGACTT-TA-CAAAAATTGGTAGAAA-AAA
63 AGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAA-TGGTGGAAAGAAA
* *
1387332 A---ATTCTTGCGAAACAAAAGCACCAATATCGA-
127 AGCTTTTCTTGCGAAACAAAAGCATCAATATC-AT
* * * *
1387363 GTATCCTAATGAGAAGACTATGTTCATGGTACCTAATCTTGAAAAGAATGGGGAATAGTATGAGT
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGAGT
*
1387428 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGCT
66 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * *
1387492 TTTCTTGCGACACCAAAGCAACAATTTCAT
131 TTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * *
1387522 TTATCCTAATGA-AAGAA-ATGCGTTTTTGGTTCCTAATCTCTAAAAAGAATGGAG-ATTGTTGT
1 GTATCCTAATGAGAAGAATAT--GTTTATGGTGCCTAATCT-TGAAAAGAATGGAGAATAG-TAT
* * * * * *** *
1387584 GAG-AATCGATGCTTGTTTTATTTAAGTGATAAACTTT-ACCTT-TAAGGAAAATAGG-GCAAAG
62 GAGTATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGA-CTTCTATCAAAAAT-GGTGGAAAG
* * * * * *
1387645 AAAAGATTTCCATGCAAAAAAAAATCATCAATATCAT
124 AAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * ** *** *
1387682 TTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAAT-TACAAAATGAAAAAAG-ATCATTACT-
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TG
* * ** * * * *
1387744 AGAATCCATGTTTGTCTCT-TTCGAGGCACGAACTTAGACTT-TA-CAAAAGTTGGTGGAAA-AA
63 AGTATTCATGTTTGTCT-TATTTAAGGGACAAACTTTGACTTCTATCAAAA-ATGGTGGAAAGAA
* *
1387805 AA-C-TTTCTTGCAAAACAAAAGCACCAATATCGA-
126 AAGCTTTTCTTGCGAAACAAAAGCATCAATATC-AT
* * *
1387838 GCATCCTAATGAGAAGACTATGTTTATGGTACCTAATCTT-AAAAGAAATTGG-GAATAGTATGA
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAG-AA-TGGAGAATAGTATGA
* * * *
1387901 GTATTCATGTTTGACTTATTTAAGAGG-CAAACTTTG-GTTCAATCAAAAACGGTGGAAAGAAAA
64 GTATTCATGTTTGTCTTATTTAAG-GGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAA
* * * * * *
1387964 GCATTTCTTACGACACCAAAGCATTAATGTCAT
128 GCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * *
1387997 GTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCTAATCTTGTAAAGAATGGA-AACT-GTTACT
1 GTATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAA-TAG-TA-T
* * * ** *** *
1388059 -AG-AATCGATGCTTATCTTATTTATA-GGATGAACTTTGA-TAT-TAAGTAAAATAGG-GCAAA
62 GAGTATTC-ATGTTTGTCTTATTTA-AGGGACAAACTTTGACT-TCTATCAAAAAT-GGTGGAAA
** * * * ** * * * *
1388118 TTAGAGATTTCCACGCAAAAGAAAATCATCAATAGCAT
123 GAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * * * *
1388156 TTATCCTAATTAGGA-AAT-TGTGTT-TGCAGTGCTTAATC-AGAAATTGAATGAAG-ATCATTA
1 GTATCCTAATGAGAAGAATATGT-TTATG--GTGCCTAATCTTGAAA-AGAATGGAGAAT-AGTA
* * * ** * *
1388216 CT-AG-AATCAATGTTTGTCTCATTTGAGACACGAACTTAGACTT-TAT-AAAAATTGGT-GAAA
61 -TGAGTATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAA-TGGTGGAAA
* * * * ** * * *
1388276 -AACAAGCCTTTCTTACAAAACCAAAGCGCCAACAACAG
123 GAA-AAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * *
1388314 GTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGT
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGAGT
* * ** * *
1388379 ATTCGTATTTGTCTTATTTAAAAGACAAACTTTCA-TTTTATCAAAAATGGTGGAAAGAAAAGCT
66 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGCT
** * *
1388443 TTTCTTGCGACGCCAAAGCATCAATGTCAT
131 TTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * * * *
1388473 GTATCCTAA--ACAAGGAATGTGTTT-TAGGTTCCCAATGC-TAAAAATAATGGAGACTATTATG
1 GTATCCTAATGAGAA-GAATATGTTTAT-GGTGCCTAAT-CTTGAAAAGAATGGAGAATAGTATG
* ** * * *
1388534 AG-AATCGATCCTTGTCTTATTTAAGGTATTAAA-TTTGA-TT-T-T-AAAGAAT-ATAGGATAA
63 AGTATTC-ATGTTTGTCTTATTTAAGGGA-CAAACTTTGACTTCTATCAAA-AATGGT-GG--AA
* * * * * * * *
1388592 AGAAAAGATTTCCATGCAAAAGAAAATCGTCAAAATCAT
122 AGAAAAGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * ** ** * *
1388631 TTATCCTAATGAGGAGAATGT-TTTACAGTGCCTAATC-ACAAAATGAAT-GAAAGATCATTACT
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGA-AT-AGTA-T
* * * * * * * * * * *
1388693 -AGAATGCATGTTTCTCTCAATTGAGGAACGAACATAGACTT-T-TCAAAAATTGGTGGAAA-AC
62 GAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAA-TGGTGGAAAGAA
* * * * * ***
1388754 GAGCCTTTCTTGTGAATCCAAAGCA-CTAATATTGG
126 AAGCTTTTCTTGCGAAACAAAAGCATC-AATATCAT
* * * * * * *
1388789 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTATTATTGAGAAGAATGGGGAAGAGTATAAGT
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGAGT
* * * * *
1388854 ATTCTTGTTTGTCTTATTT-AGGAGGCAAACTTTGA-TTTTATCAAAAACGGTGGAAAAAAAAGC
66 ATTCATGTTTGTCTTATTTAAGG-GACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGC
* * * * *
1388917 TTTTATTGCGACACCAAAGCAACAATGTCAT
130 TTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * * * * *
1388948 GTATCCTAATGA-AGGGAATGTATTTTTGGTTCCCAATCTTGAAAAAAATGGAG-ATTGTTGTGA
1 GTATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAG-TATGA
* * * ** * ** * *
1389011 G-AATCGATGCTTGACTTATTTAAGGGATGAATTTTGACTT-TAAGAAAATAAGG-GCAAAGAAA
64 GTATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAA-ATGGTGGAAAGAAA
* * ** * *
1389073 AGATTTCCATT-AAAAAAAAAACCATCAATATCAT
127 AGCTTTTC-TTGCGAAACAAAAGCATCAATATCAT
* * * * ** * ** * * *
1389107 TTATCCTAATGAGGATATTGCGTTTATAGTGCCTAAT-TACAAAATGAAAGAAG-ATCATTACT-
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TG
* * * ** * * *
1389169 AGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTT-TA-CAAAAATTGGTGGAAA-AAA
63 AGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAA-TGGTGGAAAGAAA
* * * **
1389231 ACCTTTT-TTGCG-AACCAAAGCACCAATATCGG
127 AGCTTTTCTTGCGAAACAAAAGCATCAATATCAT
* * * *
1389263 GTATCCTAATTAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGGGT
1 GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGAGT
* * ** *
1389328 GTTCATGTTTGTTTTATTTAAAAGACAAACTTTGAC-TCTATCAAAAATTGTGGAAAGAAAAGCT
66 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * * **
1389392 TTTCTTGTGATACCAAAGCTTCAATGCCAT
131 TTTCTTGCGAAACAAAAGCATCAATATCAT
* * * * * * *
1389422 GTATTCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGA
1 GTATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGA
1389474 AATTGTTGTG
Statistics
Matches: 2057, Mismatches: 646, Indels: 386
0.67 0.21 0.12
Matches are distributed among these distances:
152 2 0.00
153 61 0.03
154 47 0.02
155 110 0.05
156 214 0.10
157 80 0.04
158 413 0.20
159 927 0.45
160 184 0.09
161 16 0.01
162 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (160 bp):
GTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAATAGTATGAGT
ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGACTTCTATCAAAAATGGTGGAAAGAAAAGCT
TTTCTTGCGAAACAAAAGCATCAATATCAT
Found at i:1388777 original size:475 final size:473
Alignment explanation
Indices: 1386418--1390307 Score: 4390
Period size: 474 Copynumber: 8.2 Consensus size: 473
1386408 ACCAACAATA
* * * * * * *
1386418 GGTATCCTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTATTGTGAG
1 GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG
*
1386483 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCT
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * ** * * * * *
1386548 TTTCTTGCAACACCAACGGTTCAATGTCATGTATCCTAAAGAAAGGCATGTGATTTAGGTTCCAA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * ** *
1386613 ATGC-AAAAAATAATGGACACTGTTGCAAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTA
196 AT-CTTAAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTTAAG-GATGAACTTTG
* *
1386677 ATGTTAAAGAATATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
259 ATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * *
1386742 CTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATGAAGATCGTTTCTAGAATCCA
324 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * *
1386807 TATTTCTCTCATTTG-GGACATGAACTTAGACATTACAAAAATTGAG-GGAAAACAAGCTTTTCT
389 TGTTTGTCTCAATTGAGG-CACGAACTTAGACTTTACAAAAATTG-GTGGAAAA-AAGCCTTTCT
* *
1386870 TGCGAATCCAAAGCACCCATATC
451 TGCGAAACCAAAGCACCAATATC
* * *
1386893 GG----GTAATGAGAAGACTATGTTTATAGTGCCTATTCTTGAAAAGAATGGGGAATAGTATGAG
1 GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG
* * ** ** *
1386954 TATTCTTGTTTGGCTTATTTAAGAGGTAAACTTTGATTCTATCAAAAATAGTAGAAAGAAAAGCT
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * *
1387019 TTTCTTGCGACACCAAAGCAACAATTTCATGTAT-CTAAATGAAGGGAATGTGTTTTTGCTTCCC
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAA-GAAGGGAATGTGTTTTTGGTTCCC
* * * * * *
1387083 AATCTTGAAAAGAATGGAGA-TGGTTGCGACAATCGATGATTGTTTTTTTTAAGGGATGAACTTT
195 AATCTTAAAAAGAATGGAGACT-GTTGTGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTT
* * * * *
1387147 GACTTCAAAGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATTATTTAT
258 GATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * *
1387212 CTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-AAACAATCATTACTAGAATC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATC
* * **
1387276 CATGTTTGTCT-TATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTAGAAAAAA--AATTCT
387 CATGTTTGTCTCAATT-GAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCT
*
1387338 TGCGAAACAAAAGCACCAATATC
451 TGCGAAACCAAAGCACCAATATC
* *
1387361 GAGTATCCTAATGAGAAGACTATGTTCATGGTACCTAATCTTGAAAAGAATGGGGAATAGTATGA
1 G-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGA
*
1387426 GTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
65 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * * * * *
1387491 TTTTCTTGCGACACCAAAGCAACAATTTCATTTATCCTAATGAAAGAAATGCGTTTTTGGTTCCT
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCC
* * *
1387556 AATCTCTAAAAAGAATGGAGATTGTTGTGAGAATCGATGCTTGTTTTATTTAAGTGATAAACTTT
195 AATCT-TAAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTTAAG-GATGAACTTT
* * *
1387621 -ACCTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTA
258 GA-TTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * **
1387685 TCCTAATGAGAAGAATGTGTTTATAGTGCCTAATTACAAAATGAAAAAAGATCATTACTAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * *
1387750 CATGTTTGTCTC-TTTCGAGGCACGAACTTAGACTTTACAAAAGTTGGTGGAAAAAA-ACTTTCT
387 CATGTTTGTCTCAATT-GAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCT
* *
1387813 TGCAAAACAAAAGCACCAATATC
451 TGCGAAACCAAAGCACCAATATC
* * *
1387836 GAGCATCCTAATGAGAAGACTATGTTTATGGTACCTAATCTT-AAAAGAAATTGGGAATAGTATG
1 G-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAG-AATGGGGAATAGTATG
* * * *
1387900 AGTATTCATGTTTGACTTATTTAAGAGGCAAACTTTGGTTCAATCAAAAACGGTGGAAAGAAAAG
64 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * *
1387965 CATTTCTTACGACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCC
* ** * * *
1388030 TAATCTTGTAAAGAATGGAAACTGTTACT-AGAATCGATGCTTATCTTATTTATAGGATGAACTT
194 CAATCTTAAAAAGAATGGAGACTGTT-GTGAGAATCGATGCTTGTCTTATTTA-AGGATGAACTT
* ** * * *
1388094 TGATATT-AAGTAAAATAGGGCAAATTAGAGATTTCCACGCAAAAGAAAATCATCAATAGCATTT
257 TGATTTTAAAG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
* ** * * *
1388158 ATCCTAATTAGGA-AATTGTGTTTGCAGTGCTTAATCAGAAATTGAATGAAGATCATTACTAGAA
321 ATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * *
1388222 TCAATGTTTGTCTCATTTGAGACACGAACTTAGACTTTATAAAAATTGGTGAAAAACAAGCCTTT
385 TCCATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAA-AAGCCTTT
* * * * *
1388287 CTTACAAAACCAAAGCGCCAACAAC
449 CTTGCGAAACCAAAGCACCAATATC
* * * *
1388312 AGGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGA
1 -GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGA
* * * * * *
1388377 GTATTCGTATTTGTCTTATTTAAAAGACAAACTTTCATTTTATCAAAAATGGTGGAAAGAAAAGC
65 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * *
1388442 TTTTCTTGCGACGCCAAAGCATCAATGTCATGTATCCTAAACAA-GGAATGTGTTTTAGGTTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCC
* * * * * *
1388506 AATGC-TAAAAATAATGGAGACTATTATGAGAATCGATCCTTGTCTTATTTAAGGTATTAAATTT
195 AAT-CTTAAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTTAAGG-ATGAACTTT
* ** * *
1388570 GATTTTAAAGAATATAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCAAAATCATTTAT
258 GATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* *
1388635 CCTAATGAGGAGAATGT-TTTACAGTGCCTAATCACAAAATGAATGAAAGATCATTACTAGAATG
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG-AAGATCATTACTAGAATC
* * * * *
1388699 CATGTTTCTCTCAATTGAGGAACGAACATAGACTTTTCAAAAATTGGTGGAAAACGAGCCTTTCT
387 CATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAA-AAGCCTTTCT
* * * *
1388764 TGTGAATCCAAAGCACTAATATTG
451 TGCGAAACCAAAGCACCAATA-TC
* * * * *
1388788 GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTATTATTGAGAAGAATGGGGAAGAGTATAAG
1 GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG
* * * * *
1388853 TATTCTTGTTTGTCTTATTTAGGAGGCAAACTTTGATTTTATCAAAAACGGTGGAAAAAAAAGCT
66 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
1388918 TTTATTGCGACACCAAAGCAACAATGTCATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * *
1388983 ATCTTGAAAAA-AATGGAGATTGTTGTGAGAATCGATGCTTGACTTATTTAAGGGATGAATTTTG
196 ATCTT-AAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTG
* ** * *
1389047 ACTTT-AAGAAAATAAGGGCAAAGAAAAGATTTCCATTAAAAAAAAAACCATCAATATCATTTAT
259 ATTTTAAAGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
1389111 CCTAATGAGGATATTGCGTTTATAGTGCCTAATTACAAAATGAAAGAAGATCATTACTAGAATCC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* *
1389176 ATGTTTGTCTC-ATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAACCTTTTTT
388 ATGTTTGTCTCAATT-GAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCTT
1389240 GCG-AACCAAAGCACCAATATC
452 GCGAAACCAAAGCACCAATATC
* *
1389261 GGGTATCCTAATTAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGG
1 -GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGA
* * * * **
1389326 GTGTTCATGTTTGTTTTATTTAAAAGACAAACTTTGACTCTATCAAAAATTGTGGAAAGAAAAGC
65 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * * *
1389391 TTTTCTTGTGATACCAAAGCTTCAATGCCATGTATTCTAATGAAGGGAATGTGTTTTTGGTTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCC
* * * * *
1389456 AATCTTGAAAAA-AATGGAAATTGTTGTGAGAATCGATGCTTGTCTTATTTGAGGGAAGAGCTTT
195 AATCTT-AAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTT-AAGGATGAACTTT
* * * *
1389520 GATAGTAAGTAAAATAGTAAAATAGGGCAAAGCAAAGATTTCTAGGC-AAA-AAAATCATCAATA
258 GAT--T---T-TAA-AG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
*
1389583 TCATTTATCCTAATGAGGAGTATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
315 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
1389648 TAGAATCCATGTTTG--TC-A-T---------A---A-ACTTTACAAAAATTGGTGGGAAAAAAG
380 TAGAATCCATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAG
* * * *
1389696 CTTTTCTTGCGAAACCAGAGCAGCAACATC
444 CCTTTCTTGCGAAACCAAAGCACCAATATC
* * * * *
1389726 ATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTCCTA-TA
1 -GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGA---ATAGTA
* ** * * *
1389790 TTTAGGATACCCGATGTTAGTGTCTTATTTAAGAGACAAACTTTAAATCTATCAAAAATGGT-GA
62 -TGA-G-TATTC-ATGTT--TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * * * **
1389854 AATGAAAAGCATTTCTCGCGACACCGAAGCACCAATGTAATATATCCTAATGGTGGGAATGTGTT
121 AA-GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTT
* * * * * * * * **
1389919 TTAGGTTCCCAATGTTGAAAATAATGGACACTATTATGAGAATCGATGCTTATCGCATTTAAGAG
185 TTTGGTTCCCAATCTTAAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTTAAG-G
* * * * * * *
1389984 ATAAACTTTGATTTTAAAGAATATAGGGCAAA-AAAA-CTTTTCATTCAAAATAAAATCATCAAC
249 ATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
*
1390047 ATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
314 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * * *
1390112 CTAGAATCCATATTTCTCTTAATTGAGGCATGAACTTAAACTTTTCAAAAATTGGTGGAAAATAA
379 CTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAA-AA
* * *
1390177 GCGTTTCCTGCGAATCCAAAGCACCAATATC
443 GCCTTTCTTGCGAAACCAAAGCACCAATATC
* * * * * *
1390208 GAGTATCTTATTGAGAAGATTATGTTCATGGTGCCTATTCTTGAAAAGAATGAGGAATAGTATGA
1 G-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGA
1390273 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
65 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
1390308 TGAAAGCTCA
Statistics
Matches: 2899, Mismatches: 423, Indels: 187
0.83 0.12 0.05
Matches are distributed among these distances:
463 22 0.01
464 24 0.01
465 165 0.06
466 2 0.00
467 6 0.00
468 30 0.01
469 3 0.00
470 16 0.01
471 357 0.12
472 13 0.00
473 316 0.11
474 709 0.24
475 604 0.21
476 367 0.13
477 42 0.01
478 5 0.00
479 5 0.00
480 88 0.03
481 11 0.00
482 109 0.04
483 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
GGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG
TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
ATCTTAAAAAGAATGGAGACTGTTGTGAGAATCGATGCTTGTCTTATTTAAGGATGAACTTTGAT
TTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTCTTGCGA
AACCAAAGCACCAATATC
Found at i:1391078 original size:20 final size:20
Alignment explanation
Indices: 1391053--1391118 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
1391043 TTACAAGCCA
1391053 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATTTTGGG
*
1391073 ATGTATCAATACA-------
1 ATGTATCGATACATTTTGGG
1391086 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATTTTGGG
1391106 ATGTATCGATACA
1 ATGTATCGATACA
1391119 ATGTATCGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
13 12 0.32
20 25 0.68
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTTTGGG
Found at i:1391093 original size:33 final size:33
Alignment explanation
Indices: 1391051--1391151 Score: 177
Period size: 33 Copynumber: 3.1 Consensus size: 33
1391041 CGTTACAAGC
*
1391051 CAATGTATCGATACATTTTGGGATGTATCAATA
1 CAATGTATCGATACATTTTGGGATGTATCGATA
1391084 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATTTTGGGATGTATCGATA
*
1391117 CAATGTATCGATACATTTTGTG-TGTATCGATA
1 CAATGTATCGATACATTTTGGGATGTATCGATA
1391149 CAA
1 CAA
1391152 ACAGTTAAGG
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 13 0.20
33 53 0.80
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATTTTGGGATGTATCGATA
Found at i:1391124 original size:13 final size:13
Alignment explanation
Indices: 1391106--1391131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1391096 ACATTTTGGG
1391106 ATGTATCGATACA
1 ATGTATCGATACA
1391119 ATGTATCGATACA
1 ATGTATCGATACA
1391132 TTTTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1391241 original size:20 final size:21
Alignment explanation
Indices: 1391191--1391243 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
1391181 TGCAATGACC
**
1391191 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
* *
1391212 AGTATTGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
1391232 TGTATCGATACA
1 TGTATCGATACA
1391244 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:1391249 original size:13 final size:13
Alignment explanation
Indices: 1391231--1391255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1391221 ACATTTGGTC
1391231 ATGTATCGATACA
1 ATGTATCGATACA
1391244 ATGTATCGATAC
1 ATGTATCGATAC
1391256 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1392724 original size:475 final size:475
Alignment explanation
Indices: 1391566--1395106 Score: 4538
Period size: 475 Copynumber: 7.5 Consensus size: 475
1391556 AGATCCTAAC
* * *
1391566 AACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTCCGACACCAAAGCAACAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * **
1391631 ATGTATCCTAATG-AAGAGAATGTGTTTGTGGTTTCCAATCTTGAAAAGAATGGAGATTGTTGCG
66 ATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTATG
* * *
1391695 AGAATCGATGCTTGTCTTATTTAAGTGATGAACTTT-ACCTTTAAGGAAAATAGGGCAAAGAAAA
130 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAAGAAAATAGGGCAAAGAAAA
* * ** *
1391759 GATTTGCATGCAAAAGAAAATCATCAATATCATTTA-CCATAACGAGGAGAACATGTTTATAGTG
194 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC-TAATGAGGAGAATGTGTTTACAGTG
* * * * *
1391823 CCTAATCACAAAATGAAAGAAGATCATTACTAGAGTCCATGTTTGTCCCATTCGAGGCACGAAGT
258 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
1391888 TAGACTTTACAAAAACTGTTGGAAAAAAAACCTTTCTTGTGAAACCAAAGCACCAATATCGGGTA
323 TAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTA
* * * *
1391953 TCCTAATGAGCAGACTATGTTTATGGTGCCTAATCTTGAAAAAAAATGGGGTATAGTCTGAGTAT
388 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG-AAAAGAATGGGAT-TAGTATGAGTAT
1392018 TCATGTTTGTCTTATTTAAGAGACA
451 TCATGTTTGTCTTATTTAAGAGACA
* * * *
1392043 AGCTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAGCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* *
1392108 TTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAAACTGTTACT-
66 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTA-TG
* * * * *
1392172 AAAATTGATGCTTGTCTTATTTATGGGATGAACTTTGATATT-ATGTAAAATAGGGCAAAGAAAA
130 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAAA
* *
1392236 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATTAGGACAATGTGTTTACAGTGC
194 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
* * *
1392301 CTAATCATAAAATGAATGAAGATCATTACAAGAATCAATGTTTGTCTCATTTGAGGCACGAACTT
259 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * *
1392366 AGACTTTATAAAAGTTGGTGGAAAAAAAGCCTTTCTTACAAAACCAAAGCACCAACAACAGGTAT
324 AGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTAT
* * *
1392431 CCTAATGAGAA-AATATGATTATGGTGCCTAATCTTGAAAAGAATAAGGATTAGTATGAGTATTC
389 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGTATTC
* *
1392495 ATATTTGTCTTATTTAAAAGACA
453 ATGTTTGTCTTATTTAAGAGACA
* *
1392518 AACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * **
1392583 TTGTATCCTAAAGAAAGGAATGTGTTTTGGGTTCCCAATAC-TGAAAATAATGGGGACTGTTATG
66 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAT-CTTGAAAAGAATGGAAACTGTTATG
* * *
1392647 AGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAATATAGGGCAAAGAAAAT
130 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
** * * *
1392712 ATTTTTATGCAAAA-AAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTTACAATGCC
195 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCC
* * * * * *
1392776 TAATCACAAACTAAATAAAGATCATTTCTAGAATCCATGTTTCTCTCATTTGAGGCATGAACTTA
260 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * *
1392841 GACTTTACAAAAATTGGTAGAAAACAAGCCTTTTTTGCGAATCTAAAGCACCAGTATCAGGTATC
325 GACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTATC
* **
1392906 CTAAAGAGAAGACTAT-TATTATGGTGCCT-ATACTTGAAAAGAATGGGAAAGAGTATGAGTATT
390 CTAATGAGAAGACTATGT-TTATGGTGCCTAAT-CTTGAAAAGAATGGG-ATTAGTATGAGTATT
** * * *
1392969 CACATATGTCTTGTTTAAGAGGCA
452 CATGTTTGTCTTATTTAAGAGACA
* * * *
1392993 AACTTTGATTCTATCAAAAACGGTAGAAATAAAAGCTTTTCTT-CGACACCAAATCAACAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * **
1393057 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTTCCAATCTTGAAAAGATTGGAAATTGTTGCGA
66 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTATGA
* * * *
1393122 GAATCAAAGCTTGTCTTATTTAAGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAAGAAAAGA
131 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA
* *
1393187 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
196 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCT
* * * * *
1393252 AATCACAAAATGAAAT-AAGGTCATTACTAGAATCCATGTTTGTATCATTCGAGGCATGAATTTA
261 AATCACAAAATG-AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
1393316 GACTTCACAAAAATTAGTGGAAAAAAA-TCTTTCTTGTGAAACCAAAGCA-C-----C-GGTATC
325 GACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTATC
* *
1393373 CTAATGAGAAGACTACGTTTATGGTGCCTAATCTTGAAAAGAATAGGGAATAGTATGAGTATTCA
390 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGTATTCA
*
1393438 TGTTTGTCTTATTTAAGAGATA
454 TGTTTGTCTTATTTAAGAGACA
* ** * *
1393460 AACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCAATTCTTGTGATACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* ** * * * *
1393525 ATGTACCCTAATGATGGGAATGTGTTTTTGGTTCCTAATCTAGAGAAGAATGGAAACTATTACT-
66 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTA-TG
* * * * *
1393589 AGAATCGATGCTTGTCTTACTTATGGGATGAACTTTAATATT-AAGCAAAATAAGGCAAAGAAAA
130 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAAA
* *
1393653 GATTTCCATGC-AAAGAAAATCATCAATATCATTTATCCTAAAT-AGGAAAATGTGTTTACAATG
194 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTACAGTG
* * * *
1393716 CCTAATCACAAAATGAATGAAGATCATTATTAGAATCAAAGTTTGTCTCATTTGAGGCACGAGCT
258 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * * * *
1393781 TAGACTTTATAAAAATTGGTAGAAAAAAAGCCTTTCTTACAAAACCAAAGCACTAACAACAGGTA
323 TAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTA
* * * * * *
1393846 TCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATTGGGGATTAATATTAGTACT
388 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGTATT
*
1393911 CATGTTTGTCTTATTTAAGAGATA
452 CATGTTTGTCTTATTTAAGAGACA
* * * ** * * *
1393935 AACCTTGATTTTATCATAAACAATGGAAAAAAAAGCTTTTCTTCCGACACCAAAGCATTAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
** *
1394000 ATGTATCCTAAT-AAAGGGAATGTGTTTTTGGTTCCTTATCTTGAAAAGGATGGAAACTGTTACT
66 ATGTATCCTAATGAAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTA-T
* * * * *
1394064 -AAAATCGATACTTGTCTTATTTATGGGATGAACTTTGATATT-ATGTAAAATAGGGCAAAGAAA
129 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAA
* *
1394127 AGATTTCCATGCAAAAGAAAATCATC-ATATCATTTATCCTAATTAGGAAAATGTGTTTACAGTG
193 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG
* * * *
1394191 CCTAATCAAAAAATGAATGAAGATCATTACTAGAATCAATGTTTCTCTTATTTGAGGCACGAACT
258 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * *
1394256 TAAACTTTTCAAAAATTGGT-GAAAAACAAGCCTTTCTTGTGAATCCAAAGCACCAATATC-GAG
323 TAGACTTTACAAAAATTGGTGGAAAAA-AAGCCTTTCTTGCGAAACCAAAGCACCAATATCAG-G
* * *
1394319 TATCCTAATGAGAAGATTATGTTTATGGTGCCTATTCTTGAAAAGAATGGGAATAGTATGAGTAT
386 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTATGAGTAT
*
1394384 TCATGTTTGTCTTATTTAAGAGGCA
451 TCATGTTTGTCTTATTTAAGAGACA
* * * *
1394409 AACTTTGATTCTATGAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAACAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * * **
1394474 ATGTGTCCTAATGAAGGGAATGTGTTTGTGGTTTCCAATCTTGAAAAGAATGGAGATTGTTGCGA
66 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTATGA
* * * *
1394539 GAATCGATGCTTGTCTTATTTAAGTGATGAACTTT-ACCTTTAAGGAAAATAGGGTAAAGAAAAG
131 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAAGAAAATAGGGCAAAGAAAAG
*
1394603 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
195 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCC
* * *
1394668 TAATCACAAAATGAAAGAAGATCATTACTAGAGTCCATGTTTGTCTCATTCGAGGCACGAACTTA
260 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * *
1394733 GACTTTACAAAAATTGGTGGAAAAAAAACCTTTCTTGCGAAACCAAAGCACCAATATCGGGTGTC
325 GACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTATC
* * *
1394798 CTAATGTGCAGACTATGTTTATGGTGCCTAATCTTGAAAAAAATAGGG-TATAGTATGAGTATTC
390 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAT-TAGTATGAGTATTC
1394862 ATGTTTGTCTTATTTAAGAGACA
453 ATGTTTGTCTTATTTAAGAGACA
* * *
1394885 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* ** * *
1394950 ATGTATCCTAAAGAAAGGAATGTGTTTCAGGTTCCCAATAC-TGAAAATAATGGAGACTGTTATG
66 ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAT-CTTGAAAAGAATGGAAACTGTTATG
* * * *
1395014 AGAATTGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAAGAATATAGGGAAAAGAAAAG
130 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
* *
1395079 ATTTTCATGCAAAAAAGAAATCATCAAT
195 ATTTCCATGCAAAAGA-AAATCATCAAT
1395107 GTCTTTTAAG
Statistics
Matches: 2649, Mismatches: 366, Indels: 98
0.85 0.12 0.03
Matches are distributed among these distances:
466 3 0.00
467 237 0.09
468 159 0.06
473 3 0.00
474 553 0.21
475 1065 0.40
476 273 0.10
477 350 0.13
478 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
ATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTATGA
GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCT
AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
ACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCAGGTATCC
TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTATGAGTATTCATG
TTTGTCTTATTTAAGAGACA
Found at i:1393284 original size:159 final size:155
Alignment explanation
Indices: 1391590--1395092 Score: 1091
Period size: 159 Copynumber: 22.2 Consensus size: 155
1391580 CAAAAACAGT
* * * * * * *
1391590 GGAAAGAAAAGCTTTTCTTCCGACACCAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGTG
1 GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTG
* * * * * * * * *
1391655 TTTGTGGTTTCC-AATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTAA
66 TTTATGG-TGCCTAATCTAGAAAAGAAT-AAGA-TATTACTAGAATCAATGTTTGTCTTATTTAA
*
1391719 GTGATGAACTTT-ACCTTTAAGGAAAATAG
128 GGGATGAACTTTGA-CTTTAA-GAAAATAG
* * ** * * * **
1391748 GGCAAAGAAAAGATTTGCATGCAAAAGAAAATCATCAATATCATTTA-CCATAACGAGGAGAACA
1 GG-AAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCC-TAATGAGGAGAATG
* * * * * ** *
1391812 TGTTTATAGTGCCTAATC-ACAAAATGAAAGAAGATCATTACTAGAGTCCATGTTTGTCCCATTC
64 TGTTTATGGTGCCTAATCTAGAAAA-G-AATAAGAT-ATTACTAGAATCAATGTTTGTCTTATTT
* * * * *
1391876 GAGGCACGAAGTTAGACTTTACA-AAAACT-G
126 AAGGGATGAACTTTGACTTTA-AGAAAA-TAG
* ** * ** * *
1391906 TTGGAAA-AAAA-ACCTTTCTTGTGAAACCAAAGCACCAATATCGGGTATCCTAATGAGCAGACT
1 --GGAAAGAAAAGA-TTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAAT
* * * ** * *
1391969 ATGTTTATGGTGCCTAATCTTGAAAAAAAATGGGGTA-TAGTCTGAGTATTC-ATGTTTGTCTTA
63 GTGTTTATGGTGCCTAATCTAG-AAAAGAATAAGATATTA--CT-AG-AATCAATGTTTGTCTTA
* * * *
1392032 TTTAAGAGA-CAAGCTTTGA-TTCAATCAAAA-ACGG
123 TTTAAGGGATGAA-CTTTGACTTTAA-GAAAATA--G
* * * * * *
1392066 TGGAAAGAAAAGCA-TTTCTTGCGACAGCAAAGCATCAATGTCTTGTATCCTAATGA-AAGGAAT
1 -GGAAAGAAAAG-ATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAAT
* * * * * ** *
1392129 GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAA-ACTGTTACTAAAATTGATGCTTGTCTTATT
63 GTGTTTATGGTGCCTAATCTAGAAAAGAAT--AAGA-TATTACTAGAATCAATGTTTGTCTTATT
* *
1392193 TATGGGATGAACTTTGA-TATTATGTAAAATAG
125 TAAGGGATGAACTTTGACT-TTAAG-AAAATAG
* * ** * * * *
1392225 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATTAGGACAATGT
1 GG-AAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGT
** * * * *
1392290 GTTTACAGTGCCTAATCATA-AAATGAATGAAGATCATTACAAGAATCAATGTTTGTCTCATTTG
65 GTTTATGGTGCCTAATC-TAGAAAAGAAT-AAGAT-ATTACTAGAATCAATGTTTGTCTTATTTA
* * * * *
1392354 AGGCACGAACTTAGACTTTATA-AAAGTTGG
127 AGGGATGAACTTTGACTTTA-AGAAA-ATAG
** * * * * * * *
1392384 TGGAAA-AAAAGCCTTTCTTACAAAACCAAAGCACCAACAACAGGTATCCTAATGA-GAAAATAT
1 -GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGT
* * * * *
1392447 GATTATGGTGCCTAATCTTGAAAAGAATAAGGATTAGTA-TGAGTATTC-ATATTTGTCTTATTT
65 GTTTATGGTGCCTAATCTAGAAAAGAATAA-GA-TATTACT-AG-AATCAATGTTTGTCTTATTT
** ** * **
1392510 AAAAGACAAACTTTGATTTTATCA-AAAACGG
126 AAGGGATGAACTTTGACTTTA--AGAAAATAG
* * * * * * *
1392541 TGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGA-AAGGAATG
1 -GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAATG
* * * ** * * *
1392605 TGTTT-TGGGTTCCCAATACT-GAAAATAATGGGGACTGTTA-TGAGAATCGATGCTTGTCTTAT
64 TGTTTAT-GGTGCCTAAT-CTAGAAAAGAAT-AAGA-TATTACT-AGAATCAATGTTTGTCTTAT
* * *
1392667 TTAAGGGATGAATTTTGATTTTAAAGAATATAG
124 TTAAGGGATGAACTTTGACTTT-AAGAAAATAG
* * * * * *
1392700 GGCAAAGAAAATATTTT-TATGCAAAA-AAAATCATCAATGTCTTTTATCCTAATGAGGAGAATG
1 GG-AAAGAAAAGATTTTCT-TGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATG
*** * * * * *
1392763 TGTTTACAATGCCTAATC-ACAAACTA-AATAAAGATCATTTCTAGAATCCATGTTTCTCTCATT
64 TGTTTATGGTGCCTAATCTAGAAA--AGAAT-AAGAT-ATTACTAGAATCAATGTTTGTCTTATT
* * * *
1392826 TGAGGCATGAACTTAGACTTTACA-AAAATTG
125 TAAGGGATGAACTTTGACTTTA-AGAAAATAG
* * * * * * * * * * *
1392857 GTAGAAA-ACAAGCCTTTT-TTGCGAATCTAAAGCACCAGTATCAGGTATCCTAAAGAGAAGACT
1 G--GAAAGAAAAG-ATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAAT
* * * * * *
1392920 AT-TATTATGGTGCCT-ATACTTGAAAAGAATGGGAA-AGAGTA-TGAGTATTCACA--TATGTC
63 GTGT-TTATGGTGCCTAAT-CTAGAAAAGAAT---AAGATATTACT-AG-AATCA-ATGTTTGTC
* **
1392979 TTGTTTAAGAGGCA--AACTTTGA-TTCTATCAAAA-ACG
120 TTATTTAAG-GG-ATGAACTTTGACTT-TAAGAAAATA-G
* * * * * * *
1393015 GTAGAAATAAAAGCTTTTCTT-CGACACCAAATCAACAATGTCATGTATCCTAATGAAGG-GAAT
1 G--GAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAAT
* * * * * * * * *
1393078 GTGTTTTTGGTTTCC-AATCTTGAAAAGATTGGAA-ATTGTTGCGAGAATCAAAGCTTGTCTTAT
63 GTGTTTATGG-TGCCTAATCTAGAAAAGAAT--AAGA-TATTACTAGAATCAATGTTTGTCTTAT
1393141 TTAAGGGATGAACTTTGACTTTAAGGAAAATAG
124 TTAAGGGATGAACTTTGACTTTAA-GAAAATAG
* ** * *
1393174 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
1 GG-AAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGT
* * * * * * **
1393239 GTTTATAGTGCCTAATC-ACAAAATGAAATAAGGTCATTACTAGAATCCATGTTTGTATCATTCG
65 GTTTATGGTGCCTAATCTAGAAAA-G-AATAAGAT-ATTACTAGAATCAATGTTTGTCTTATTTA
* *
1393303 AGGCATGAA-TTTAGACTTCACA-AAAATTAG
127 AGGGATGAACTTT-GACTTTA-AGAAAA-TAG
** * * * *
1393333 TGG-AA-AAAA-ATCTTTCTTGTGAAACCAAAGCA-C-----C-GGTATCCTAATGAGAAGACTA
1 -GGAAAGAAAAGAT-TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATG
* * * * *
1393388 CGTTTATGGTGCCTAATCTTGAAAAGAATAGGGAATAGTA-TGAGTATTC-ATGTTTGTCTTATT
64 TGTTTATGGTGCCTAATCTAGAAAAGAATA-AG-ATATTACT-AG-AATCAATGTTTGTCTTATT
* * * *
1393451 TAAGAGATAAACTTTGA-TTCAATCAAAA-ACGG
125 TAAGGGATGAACTTTGACTTTAA-GAAAATA--G
* ** * * *
1393483 TGGAAAGAAAAGCA-ATTCTTGTGATACCAAAGCATCAATGTCATGTACCCTAATGATGG-GAAT
1 -GGAAAGAAAAG-ATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGA-GGAGAAT
* * * * * *
1393546 GTGTTTTTGGTTCCTAATCTAGAGAAGAATGGAA-ACTATTACTAGAATCGATGCTTGTCTTACT
63 GTGTTTATGGTGCCTAATCTAGAAAAGAAT--AAGA-TATTACTAGAATCAATGTTTGTCTTATT
* *
1393610 TATGGGATGAACTTT-AATATTAAGCAAAATAAG
125 TAAGGGATGAACTTTGACT-TTAAG-AAAAT-AG
* * * * * *
1393643 GCAAAGAAAAGATTTCCATGCAAAGA--AAATCATCAATATCATTTATCCTAAAT-AGGAAAATG
1 GGAAAGAAAAGATTTTCTTGCAAA-ACCAAAGCATCAATATCATGTATCCT-AATGAGGAGAATG
*** * * * *
1393705 TGTTTACAATGCCTAATC-ACAAAATGAATGAAGATCATTATTAGAATCAAAGTTTGTCTCATTT
64 TGTTTATGGTGCCTAATCTAGAAAA-GAAT-AAGAT-ATTACTAGAATCAATGTTTGTCTTATTT
* * * * * *
1393769 GAGGCACGAGCTTAGACTTTATA-AAAATTG
126 AAGGGATGAACTTTGACTTTA-AGAAAATAG
** * * * * * * *
1393799 GTAGAAA-AAAAGCCTTTCTTACAAAACCAAAGCA-CTAACAACAGGTATCCTAACGAGAAGACT
1 G--GAAAGAAAAGATTTTCTTGCAAAACCAAAGCATC-AATATCATGTATCCTAATGAGGAGAAT
* * ** * * *
1393862 ATGTTTATGGTGCCTAATCCT-GAAAAGATTGGGGATTAATATTAGTACTC-ATGTTTGTCTTAT
63 GTGTTTATGGTGCCTAAT-CTAGAAAAGAAT-AAGA-TATTACTAG-AATCAATGTTTGTCTTAT
* * * * * *
1393925 TTAAGAGATAAACCTTGATTTTATCATAAACA-AT
124 TTAAGGGATGAACTTTGACTTTA--AGAAA-ATAG
* * * * * * * *
1393959 GGAAAAAAAAGCTTTTCTTCCGACACCAAAGCATTAATGTCATGTATCCTAATAAAGG-GAATGT
1 GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-GAGGAGAATGT
* * * * * * * * **
1394023 GTTTTTGGTTCCTTATCTTGAAAAGGATGGAA-ACTGTTACTAAAATCGATACTTGTCTTATTTA
65 GTTTATGGTGCCTAATCTAGAAAAGAAT--AAGA-TATTACTAGAATCAATGTTTGTCTTATTTA
* *
1394087 TGGGATGAACTTTGA-TATTATGTAAAATAG
127 AGGGATGAACTTTGACT-TTAAG-AAAATAG
* * ** * * * *
1394117 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC-ATATCATTTATCCTAATTAGGAAAATGT
1 GG-AAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGT
** * * *
1394181 GTTTACAGTGCCTAATC-AAAAAATGAATGAAGATCATTACTAGAATCAATGTTTCTCTTATTTG
65 GTTTATGGTGCCTAATCTAGAAAA-GAAT-AAGAT-ATTACTAGAATCAATGTTTGTCTTATTTA
* * ** * *
1394245 AGGCACGAACTTAAACTTTTCA-AAAATTG
127 AGGGATGAACTTTGAC-TTTAAGAAAATAG
** ** * * * *
1394274 GTGAAA-AACAAGCCTTTCTTGTGAATCCAAAGCACCAATATCGA-GTATCCTAATGAGAAGATT
1 G-GAAAGAA-AAGATTTTCTTGCAAAACCAAAGCATCAATATC-ATGTATCCTAATGAGGAGAAT
* * * ** * *
1394337 ATGTTTATGGTGCCTATTCTTGAAAAGAATGGGAATAGTA-TGAGTATTC-ATGTTTGTCTTATT
63 GTGTTTATGGTGCCTAATCTAGAAAAGAATAAG-ATATTACT-AG-AATCAATGTTTGTCTTATT
* *
1394400 TAAGAGGCA--AACTTTGA-TTCTATGAAAAACAG
125 TAAG-GG-ATGAACTTTGACTT-TAAG-AAAATAG
* * * * *
1394432 TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAACAATGTCATGTGTCCTAATGAAGG-GAATG
1 -GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATG
* * * * * * * * *
1394496 TGTTTGTGGTTTCC-AATCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTT
64 TGTTTATGG-TGCCTAATCTAGAAAAGAAT-AAGA-TATTACTAGAATCAATGTTTGTCTTATTT
*
1394560 AAGTGATGAACTTT-ACCTTTAAGGAAAATAG
126 AAGGGATGAACTTTGA-CTTTAA-GAAAATAG
* * ** * *
1394591 GGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
1 GG-AAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGT
* * * * * * **
1394656 GTTTATAGTGCCTAATC-ACAAAATGAAAGAAGATCATTACTAGAGTCCATGTTTGTCTCATTCG
65 GTTTATGGTGCCTAATCTAGAAAA-G-AATAAGAT-ATTACTAGAATCAATGTTTGTCTTATTTA
* * * *
1394720 AGGCACGAACTTAGACTTTACA-AAAATTGG
127 AGGGATGAACTTTGACTTTA-AGAAAA-TAG
* * * ** * * * * *
1394750 TGGAAA-AAAA-ACCTTTCTTGCGAAACCAAAGCACCAATATCGGGTGTCCTAATGTGCAGACTA
1 -GGAAAGAAAAGA-TTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATG
* * * * *
1394813 TGTTTATGGTGCCTAATCTTGAAAAAAATAGGGTATAGTA-TGAGTATTC-ATGTTTGTCTTATT
64 TGTTTATGGTGCCTAATCTAGAAAAGAATA-AG-ATATTACT-AG-AATCAATGTTTGTCTTATT
* ** * *
1394876 TAAGAGACAAACTTTGATTTTATCA-AAAATGG
125 TAAGGGATGAACTTTGACTTTA--AGAAAATAG
* ** * * * *
1394908 TGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGA-AAGGAATG
1 -GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAATG
* * * * * ** *
1394972 TGTTTCA-GGTTCCCAATACT-GAAAATAATGGAGACTGTTA-TGAGAATTGATGCTTGTCTTAT
64 TGTTT-ATGGTGCCTAAT-CTAGAAAAGAAT-AAGA-TATTACT-AGAATCAATGTTTGTCTTAT
* * *
1395034 TTAGGGGATGAACTTTGATTTTAAAGAATATAG
124 TTAAGGGATGAACTTTGACTTT-AAGAAAATAG
*
1395067 GGAAAAGAAAAGATTTTCATGCAAAA
1 GG-AAAGAAAAGATTTTCTTGCAAAA
1395093 AAGAAATCAT
Statistics
Matches: 2422, Mismatches: 680, Indels: 485
0.68 0.19 0.14
Matches are distributed among these distances:
148 2 0.00
149 9 0.00
150 67 0.03
151 14 0.01
152 22 0.01
153 1 0.00
154 1 0.00
155 2 0.00
156 17 0.01
157 233 0.10
158 942 0.39
159 969 0.40
160 135 0.06
161 4 0.00
162 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (155 bp):
GGAAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTG
TTTATGGTGCCTAATCTAGAAAAGAATAAGATATTACTAGAATCAATGTTTGTCTTATTTAAGGG
ATGAACTTTGACTTTAAGAAAATAG
Found at i:1394450 original size:158 final size:158
Alignment explanation
Indices: 1391566--1395036 Score: 1105
Period size: 158 Copynumber: 22.0 Consensus size: 158
1391556 AGATCCTAAC
* * * * *
1391566 AACTTTGA-TTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTCCGACACCAAAGCAACAATGT
1 AACTTTGACTT-TATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * *
1391630 CATGTATCCTAATGA-AGAGAATGTGTTTGTGGTTTCC-AATCTTGAAAAGAAT-GGAGATTGT-
65 CATGTATCCTAATGAGA-AGAATATGTTTATGG-TGCCTAATCTTGAAAAGAATGGGAGATAGTA
* * * **
1391691 TGCGAGAATCGATGCTTGTCTTATTTAAGTGATG
128 T--GAGATTC-ATGTTTGTCTTATTTAAGAGACA
*** * * * * ** * *
1391725 AACTTT-ACCTTTAAGGAAAATAG-GGCAAAGAAAAGATTTGCATGCAAAAGAAAATCATCAATA
1 AACTTTGA-CTTTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATA
* * * * * ** * * *
1391788 TCATTTA-CCATAACGAGGAGAACATGTTTATAGTGCCTAATC-ACAAAATGAA-AGAAGATCAT
64 TCATGTATCC-TAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGAGAT-AG
* ** ** *
1391850 TACT-AGAGTCCATGTTTGTCCCATTCGAG-GCACG
126 TA-TGAGA-TTCATGTTTGTCTTATTTAAGAG-ACA
* * * * *
1391884 AAGTTAGACTTTA-CAAAAACT-GTTGGAAA-AAAAACCTTTCTTGTGAAACCAAAGCACCAATA
1 AACTTTGACTTTATCAAAAA-TAG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATA
** * * *
1391946 TCGGGTATCCTAATGAGCAGACTATGTTTATGGTGCCTAATCTTGAAAAAAAATGGG-GTATAGT
64 TCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTG-AAAAGAATGGGAG-ATAGT
*
1392010 CTGAGTATTCATGTTTGTCTTATTTAAGAGACA
127 ATGAG-ATTCATGTTTGTCTTATTTAAGAGACA
* * ** * * * * *
1392043 AGCTTTGA-TTCAATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAGCAAAGCATCAATGT
1 AACTTTGACTT-TATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * * *
1392107 CTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT-GGAAACT-GTT
65 CATGTATCCTAATGAGAA-GAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAGA-TAG-T
* * * * * * **
1392169 ACTAAAATTGATGCTTGTCTTATTTATGGGATG
127 A-TGAGATTCATGTTTGTCTTATTTAAGAGACA
** * * * * ** * *
1392202 AACTTTGA-TATTATGTAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
1 AACTTTGACT-TTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATA
* * * * * ** * * *
1392265 TCATTTATCCTAATTAGGACAATGTGTTTACAGTGCCTAATCAT-AAAATGAAT-GAAGATCATT
64 TCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGAGAT-AGT
** * * * *
1392328 ACAAGAATCAATGTTTGTCTCATTTGAG-GCACG
127 ATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACA
* * * * * * * *
1392361 AACTTAGACTTTAT-AAAAGTTGGTGGAAA-AAAAGCCTTTCTTACAAAACCAAAGCACCAACAA
1 AACTTTGACTTTATCAAAA-ATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * *
1392424 CAGGTATCCTAATGAGAA-AATATGATTATGGTGCCTAATCTTGAAAAGAATAAGGA-TTAGTAT
65 CATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAGATAGTAT
* *
1392487 GAGTATTCATATTTGTCTTATTTAAAAGACA
129 GAG-ATTCATGTTTGTCTTATTTAAGAGACA
* ** * * * *
1392518 AACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGACTTTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATATC
* * * * * *
1392583 TTGTATCCTAAAGA-AAGGAATGTGTTT-TGGGTTCCCAATAC-TGAAAATAATGGG-GACT-GT
66 ATGTATCCTAATGAGAA-GAATATGTTTAT-GGTGCCTAAT-CTTGAAAAGAATGGGAGA-TAG-
* * * **
1392643 TATGAGAATCGATGCTTGTCTTATTTAAGGGATG
126 TATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* * ** ** * *
1392677 AATTTTGA-TTT-TAAAGAATATAG-GGCAAAGAAAATATTTT-TATGC-AAAAAAAATCATCAA
1 AACTTTGACTTTATCAA-AA-ATAGTGG-AAAGAAAAGCTTTTCT-TGCGAAACCAAAGCACCAA
* * * * * *** ** **
1392737 TGTCTTTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATC-ACAAACTA-AAT-AAAGATC
62 TATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAA--AGAATGGGAGAT-
* * * * * *
1392799 A-TTTCTAGAATCCATGTTTCTCTCATTT--GAGGCA
124 AGTAT-GAG-ATTCATGTTTGTCTTATTTAAGAGACA
* * * * * * *
1392833 TGAACTTAGACTTTA-CAAAAATTGGTAGAAA-ACAAGCCTTTT-TTGCGAATCTAAAGCACCAG
1 --AACTTTGACTTTATCAAAAA-TAGTGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAGCACCAA
* * * * *
1392895 TATCAGGTATCCTAAAGAGAAGACTAT-TATTATGGTGCCT-ATACTTGAAAAGAATGGGAAAGA
62 TATCATGTATCCTAATGAGAAGAATATGT-TTATGGTGCCTAAT-CTTGAAAAGAATGGGAGATA
** * * *
1392958 GTATGAGTATTCACATATGTCTTGTTTAAGAGGCA
125 GTATGAG-ATTCATGTTTGTCTTATTTAAGAGACA
** * * * * * *
1392993 AACTTTGA-TTCTATCAAAAACGGTAGAAATAAAAGCTTTTCTT-CGACACCAAATCAACAATGT
1 AACTTTGACTT-TATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * * * * *
1393056 CATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTTCC-AATCTTGAAAAG-ATTGGAAATTGT-
65 CATGTATCCTAATGAGA-AGAATATGTTTATGG-TGCCTAATCTTGAAAAGAATGGGAGATAGTA
* * * * **
1393117 TGCGAGAATCAAAGCTTGTCTTATTTAAGGGATG
128 T--GAGATTC-ATGTTTGTCTTATTTAAGAGACA
*** * * * ** * *
1393151 AACTTTGACTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
1 AACTTTGACTTTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * * ** * ** *
1393215 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAAATAAGGTCATTAC
65 CATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-G-AAT-GGGAGA-TAG
* * * * *
1393279 TA-GA-ATCCATGTTTGTATCA-TT-CGAGGCA
126 TATGAGATTCATGTTTGTCTTATTTAAGAGACA
* * *
1393308 TGAA-TTTAGACTTCA-CAAAAATTAGTGGAAA-AAAATC-TTTCTTGTGAAACCAAAGCA-C--
1 --AACTTT-GACTTTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAA
* * *
1393366 ---C-GGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAATCTTGAAAAGAATAGGGA-ATAG
62 TATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAGATAG
*
1393426 TATGAGTATTCATGTTTGTCTTATTTAAGAGATA
126 TATGAG-ATTCATGTTTGTCTTATTTAAGAGACA
* ** ** * * * *
1393460 AACTTTGA-TTCAATCAAAAACGGTGGAAAGAAAAGCAATTCTTGTGATACCAAAGCATCAATGT
1 AACTTTGACTT-TATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * * * * * * *
1393524 CATGTACCCTAATGATG-GGAATGTGTTTTTGGTTCCTAATCTAGAGAAGAAT-GGAAACTATTA
65 CATGTATCCTAATGA-GAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAGA-TAGTA
* * * * * **
1393587 CT-AGAATCGATGCTTGTCTTACTTATGGGATG
128 -TGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* * * * * * ** * *
1393619 AACTTT-AATATTAAGC-AAAATAAG-GCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAAT
1 AACTTTGACT-TT-ATCAAAAAT-AGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAAT
* * *** ** *
1393680 ATCATTTATCCTAAAT-AGGAA-AATGTGTTTACAATGCCTAATC-ACAAAATGAAT-GAAGATC
63 ATCATGTATCCT-AATGA-GAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGAGAT-
* * * * * * *
1393741 ATTATTAGAATCAAAGTTTGTCTCATTTGAG-GCACG
124 AGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACA
* * * * * * * * * *
1393777 AGCTTAGACTTTAT-AAAAATTGGTAGAAA-AAAAGCCTTTCTTACAAAACCAAAGCACTAACAA
1 AACTTTGACTTTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
* * * * * *
1393840 CAGGTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATTGGG-GATTAATAT
65 CATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAGA-TAGTAT
* * *
1393904 TAGTACTCATGTTTGTCTTATTTAAGAGATA
129 GAG-ATTCATGTTTGTCTTATTTAAGAGACA
* * * * * * * * ** *
1393935 AACCTTGATTTTATCATAAACAATGGAAAAAAAAGCTTTTCTTCCGACACCAAAGCATTAATGTC
1 AACTTTGACTTTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATATC
* * * * * *
1394000 ATGTATCCTAAT-A-AAGGGAATGTGTTTTTGGTTCCTTATCTTGAAAAGGAT-GGAAACT-GTT
66 ATGTATCCTAATGAGAA--GAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAGA-TAG-T
* * ** * * **
1394061 ACT-AAAATCGATACTTGTCTTATTTATGGGATG
127 A-TGAGATTC-ATGTTTGTCTTATTTAAGAGACA
** * * * * ** * *
1394094 AACTTTGA-TATTATGTAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC-ATA
1 AACTTTGACT-TTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATA
* * * ** ** * *
1394156 TCATTTATCCTAATTAGGAA-AATGTGTTTACAGTGCCTAATC-AAAAAATGAAT-GAAGATCAT
64 TCATGTATCCTAATGA-GAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGAGAT-AG
* * * *
1394218 TACT-AGAATCAATGTTTCTCTTATTTGAG-GCACG
126 TA-TGAGATTC-ATGTTTGTCTTATTTAAGAG-ACA
** * * * *
1394252 AACTTAAACTTT-TCAAAAATTG-GTGAAA-AACAAGCCTTTCTTGTGAATCCAAAGCACCAATA
1 AACTTTGACTTTATCAAAAATAGTG-GAAAGAA-AAGCTTTTCTTGCGAAACCAAAGCACCAATA
* *
1394314 TCGA-GTATCCTAATGAGAAGATTATGTTTATGGTGCCTATTCTTGAAAAGAATGGGA-ATAGTA
64 TC-ATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAGATAGTA
*
1394377 TGAGTATTCATGTTTGTCTTATTTAAGAGGCA
128 TGAG-ATTCATGTTTGTCTTATTTAAGAGACA
* * * *
1394409 AACTTTGA-TTCTATGAAAAACAGTGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCAACAATG
1 AACTTTGACTT-TATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCACCAATA
* * * * * *
1394472 TCATGTGTCCTAATGA-AGGGAATGTGTTTGTGGTTTCC-AATCTTGAAAAGAAT-GGAGATTGT
64 TCATGTATCCTAATGAGA-AGAATATGTTTATGG-TGCCTAATCTTGAAAAGAATGGGAGATAGT
* * * **
1394534 -TGCGAGAATCGATGCTTGTCTTATTTAAGTGATG
127 AT--GAGATTC-ATGTTTGTCTTATTTAAGAGACA
*** * * * * ** * *
1394568 AACTTT-ACCTTTAAGGAAAATAG-GGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
1 AACTTTGA-CTTTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATA
* * * * ** * * *
1394631 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAA-AGAAGATCATT
64 TCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGAGAT-AGT
* * ** *
1394694 ACT-AGAGTCCATGTTTGTCTCATTCGAG-GCACG
127 A-TGAGA-TTCATGTTTGTCTTATTTAAGAG-ACA
* * * *
1394727 AACTTAGACTTTA-CAAAAATTGGTGGAAA-AAAAACCTTTCTTGCGAAACCAAAGCACCAATAT
1 AACTTTGACTTTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATAT
** * * * * * *
1394790 CGGGTGTCCTAATGTGCAGACTATGTTTATGGTGCCTAATCTTGAAAAAAATAGGG-TATAGTAT
65 CATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGAGATAGTAT
1394854 GAGTATTCATGTTTGTCTTATTTAAGAGACA
129 GAG-ATTCATGTTTGTCTTATTTAAGAGACA
* * * * * *
1394885 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
1 AACTTTGACTTTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATATC
* * * * *
1394950 ATGTATCCTAAAGA-AAGGAATGTGTTTCA-GGTTCCCAATAC-TGAAAATAAT-GGAGACT-GT
66 ATGTATCCTAATGAGAA-GAATATGTTT-ATGGTGCCTAAT-CTTGAAAAGAATGGGAGA-TAG-
* *
1395010 TATGAGAATTGATGCTTGTCTTATTTA
126 TATGAG-ATTCATGTTTGTCTTATTTA
1395037 GGGGATGAAC
Statistics
Matches: 2388, Mismatches: 693, Indels: 462
0.67 0.20 0.13
Matches are distributed among these distances:
147 4 0.00
148 3 0.00
149 8 0.00
150 58 0.02
151 21 0.01
152 22 0.01
153 1 0.00
156 9 0.00
157 228 0.10
158 950 0.40
159 949 0.40
160 122 0.05
161 6 0.00
162 5 0.00
163 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
AACTTTGACTTTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCACCAATATC
ATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCTTGAAAAGAATGGGAGATAGTATGA
GATTCATGTTTGTCTTATTTAAGAGACA
Found at i:1397137 original size:43 final size:43
Alignment explanation
Indices: 1396994--1397233 Score: 226
Period size: 43 Copynumber: 5.5 Consensus size: 43
1396984 AAAAAGAGTA
* * *
1396994 CGTCTTGCT-TTTCGAGGACAAAGGAAAAAAGGATAACGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAGGAAAAAAGGAAAATGAAATG
*
1397037 TGTCCTGCTCTTTGAGGACTAAAAGGGAAAAGAAGG-AAATGAAGA-G
1 CGTCCTGCTCTTTGAGGAC--AAA-GGAAAA-AAGGAAAATGAA-ATG
*
1397083 CGTCCTACTCTTTGAGGACAAA-GAAGAAAAGGAAAATGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGAA-AAAAGGAAAATGAAATG
* *
1397126 CGTCTTGCTCTTTGAGGACAAAAG-AAAAAGGAAAAT-AAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAA-TG
* *
1397168 CATCCTGCTCTTTGAGGACAGAAGGGAAAACAAGG-AAATGAAGTG
1 CGTCCTGCTCTTTGAGGACA-AA-GGAAAA-AAGGAAAATGAAATG
*
1397213 CGTCCTG-TCCGTTGAGGACAA
1 CGTCCTGCT-CTTTGAGGACAA
1397234 GGGGGAAGAG
Statistics
Matches: 166, Mismatches: 14, Indels: 33
0.78 0.07 0.15
Matches are distributed among these distances:
41 3 0.02
42 39 0.23
43 46 0.28
44 10 0.06
45 28 0.17
46 35 0.21
47 5 0.03
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.20
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAATGAAATG
Found at i:1397228 original size:130 final size:127
Alignment explanation
Indices: 1396994--1397274 Score: 322
Period size: 130 Copynumber: 2.2 Consensus size: 127
1396984 AAAAAGAGTA
* *
1396994 CGTCTTGCT-TTTCGAGGACAAAGGAAAAAAGGATAACGAAATGTGTCCTGCTCTTTGAGGACTA
1 CGTCTTGCTCTTT-GAGGACAAAAGAAAAAAGGATAAAGAAATGTGTCCTGCTCTTTGAGGACTA
* *
1397058 AAAGGGAAAAGAAGGAAATGAAGAGCGTCCTACTCTTTGAGGACAAAGAAGAAAAGGAAAATGAA
65 AAAGGGAAAACAAGGAAATGAAGAGCGTCCTACTCGTTGAGGACAAAGAAGAAAAGGAAAA-G--
1397123 ATG
127 --G
*
1397126 CGTCTTGCTCTTTGAGGACAAAAG-AAAAAGGA-AAATAAA-GTGCATCCTGCTCTTTGAGGAC-
1 CGTCTTGCTCTTTGAGGACAAAAGAAAAAAGGATAAAGAAATGTG--TCCTGCTCTTTGAGGACT
* * * * ** *
1397187 AGAAGGGAAAACAAGGAAATGAAGTGCGTCCT-GTCCGTTGAGGACAAGGGGGAAGAGGAAAAGG
64 AAAAGGGAAAACAAGGAAATGAAGAGCGTCCTACT-CGTTGAGGACAAAGAAGAAAAGGAAAAGG
1397251 CGTCTTGCTCTTTGAGGACTAAAA
1 CGTCTTGCTCTTTGAGGAC-AAAA
1397275 CGTGCCACCA
Statistics
Matches: 132, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
125 20 0.15
126 4 0.03
129 5 0.04
130 56 0.42
131 25 0.19
132 19 0.14
133 3 0.02
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.20
Consensus pattern (127 bp):
CGTCTTGCTCTTTGAGGACAAAAGAAAAAAGGATAAAGAAATGTGTCCTGCTCTTTGAGGACTAA
AAGGGAAAACAAGGAAATGAAGAGCGTCCTACTCGTTGAGGACAAAGAAGAAAAGGAAAAGG
Found at i:1397341 original size:61 final size:61
Alignment explanation
Indices: 1397244--1397361 Score: 191
Period size: 61 Copynumber: 1.9 Consensus size: 61
1397234 GGGGGAAGAG
*
1397244 GAAAAGGCGTCTTGCTCTTTGAGGACTAAAACGTGCCACCAACTCGTGTGGGCTTTGAAAA
1 GAAAAAGCGTCTTGCTCTTTGAGGACTAAAACGTGCCACCAACTCGTGTGGGCTTTGAAAA
** * *
1397305 GAAAAAGCGTCTTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTG
1 GAAAAAGCGTCTTGCTCTTTGAGGACTAAAACGTGCCACCAACTCGTGTGGGCTTTG
1397362 TAGACACTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (61 bp):
GAAAAAGCGTCTTGCTCTTTGAGGACTAAAACGTGCCACCAACTCGTGTGGGCTTTGAAAA
Found at i:1397655 original size:13 final size:13
Alignment explanation
Indices: 1397637--1397693 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1397627 CATAAAGTGT
1397637 TGTATCGATACAA
1 TGTATCGATACAA
1397650 TGTATCGATACATAA
1 TGTATCGATAC--AA
1397665 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
1397682 TGTATCGATACA
1 TGTATCGATACA
1397694 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1397672 original size:32 final size:32
Alignment explanation
Indices: 1397617--1397717 Score: 184
Period size: 32 Copynumber: 3.1 Consensus size: 32
1397607 TTCAACGATT
1397617 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
1397650 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
1397682 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1397714 TGTA
1 TGTA
1397718 AGCTACTGCC
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 54 0.81
33 13 0.19
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1397674 original size:19 final size:18
Alignment explanation
Indices: 1397615--1397712 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
1397605 TTTTCAACGA
1397615 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
1397634 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1397650 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1397666 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1397682 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1397698 TTTTGTATCGATACA
1 -TTTGTATCGATACA
1397713 ATGTAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
19 24 0.36
20 12 0.18
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:1397773 original size:13 final size:13
Alignment explanation
Indices: 1397755--1397779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1397745 ATTACTCAAA
1397755 TGTATCGATACAT
1 TGTATCGATACAT
1397768 TGTATCGATACA
1 TGTATCGATACA
1397780 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1397832 original size:52 final size:52
Alignment explanation
Indices: 1397788--1397968 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
1397778 CACTGATCTT
1397788 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1397840 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
1397892 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1397944 TGTATCGATACATGCCGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1397969 TCATATTTCG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1414858 original size:9 final size:9
Alignment explanation
Indices: 1414844--1414912 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
1414834 TTACAAAAAA
1414844 AAAACAAAC
1 AAAACAAAC
1414853 AAAACAAA-
1 AAAACAAAC
* *
1414861 AAAAAAGAAG
1 AAAACA-AAC
* *
1414871 AAAAGAAAAG
1 AAAA-CAAAC
*
1414881 AAAAGAAAC
1 AAAACAAAC
*
1414890 AAAAGAAAC
1 AAAACAAAC
1414899 ACAAACAAAC
1 A-AAACAAAC
1414909 AAAA
1 AAAA
1414913 AAAAAAGAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
8 5 0.10
9 26 0.50
10 19 0.37
11 2 0.04
ACGTcount: A:0.80, C:0.12, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAACAAAC
Found at i:1414866 original size:10 final size:10
Alignment explanation
Indices: 1414839--1414930 Score: 66
Period size: 10 Copynumber: 9.2 Consensus size: 10
1414829 GTCCTTTACA
1414839 AAAAAAAAAC
1 AAAAAAAAAC
*
1414849 -AAACAAAAC
1 AAAAAAAAAC
*
1414858 AAAAAAAAAG
1 AAAAAAAAAC
1414868 AAGAAAAGAAA-
1 AA-AAAA-AAAC
*
1414879 AGAAAAGAAAC
1 A-AAAAAAAAC
*
1414890 -AAAAGAAAC
1 AAAAAAAAAC
* *
1414899 ACAAACAAAC
1 AAAAAAAAAC
1414909 AAAAAAAAA-
1 AAAAAAAAAC
1414918 AGAAAAAAAAC
1 A-AAAAAAAAC
1414929 AA
1 AA
1414931 CAACAAAAAG
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
9 18 0.27
10 35 0.53
11 9 0.14
12 4 0.06
ACGTcount: A:0.83, C:0.10, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1414929 original size:30 final size:30
Alignment explanation
Indices: 1414881--1414937 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
1414871 AAAAGAAAAG
* *
1414881 AAAAGAAACAAAAGAAAC-ACAAACAAACAA
1 AAAAAAAACAAAAAAAACAAC-AACAAACAA
*
1414911 AAAAAAAAGAAAAAAAACAACAACAAA
1 AAAAAAAACAAAAAAAACAACAACAAA
1414938 AAGGGTCCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 21 0.91
31 2 0.09
ACGTcount: A:0.81, C:0.14, G:0.05, T:0.00
Consensus pattern (30 bp):
AAAAAAAACAAAAAAAACAACAACAAACAA
Found at i:1416380 original size:30 final size:30
Alignment explanation
Indices: 1416347--1416766 Score: 506
Period size: 30 Copynumber: 14.6 Consensus size: 30
1416337 CATTCCTCAC
* * *
1416347 CCTTTTCAAAAGCCCACAAGTCAGTGGCAC
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
*
1416377 CCTTTTCCAAAGCTCACAAATCAGTGGCAA
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
1416407 CC--TT-CAAAGCCCACAAATCAGTGGC-A
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
1416433 CCTTTTTCCAAAGCCCACAAATCAGTGGCAA
1 CC-TTTTCCAAAGCCCACAAATCAGTGGCAA
* *
1416464 CC--TT-CAAATCCCACAAATCAGTGGCAC
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
*
1416491 CCTTTTCCAAAGCCCACAAGTCAGTGGCAA
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
*
1416521 CC--TTCCAAAGCCCACAAGTCAGTGGCAA
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
1416549 CC--TT-CAAAGCCCACAAATCAGTGGC-A
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
* * *
1416575 CCATTTTCCAAAGCTCACAAATTAGTGGCAC
1 CC-TTTTCCAAAGCCCACAAATCAGTGGCAA
*
1416606 CCTTTTCCAAAGCCCACAAATTAGTGGCAA
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
1416636 CC--TT-CAAAGCCCACAAATCAGTGGCAA
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
*
1416663 CCTTTTCCAAAGCCCACAAGTCAGTGGCAA
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
1416693 CC--TT-CAAAGCCCACAAATCAGTGGC-A
1 CCTTTTCCAAAGCCCACAAATCAGTGGCAA
** *
1416719 CCATTTTCCAAAGCCCACAAGGCAGCGGCAA
1 CC-TTTTCCAAAGCCCACAAATCAGTGGCAA
*
1416750 CC--TTCTAAAGCCCACAA
1 CCTTTTCCAAAGCCCACAA
1416767 CTCTGCGATG
Statistics
Matches: 346, Mismatches: 23, Indels: 44
0.84 0.06 0.11
Matches are distributed among these distances:
26 9 0.03
27 107 0.31
28 52 0.15
29 10 0.03
30 160 0.46
31 8 0.02
ACGTcount: A:0.33, C:0.34, G:0.15, T:0.19
Consensus pattern (30 bp):
CCTTTTCCAAAGCCCACAAATCAGTGGCAA
Found at i:1416440 original size:57 final size:57
Alignment explanation
Indices: 1416355--1416766 Score: 598
Period size: 57 Copynumber: 7.2 Consensus size: 57
1416345 ACCCTTTTCA
* *
1416355 AAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCTCACAAATCAGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
*
1416412 AAAGCCCACAAATCAGTGGCACCTTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
* *
1416469 AAATCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTT-C
* *
1416527 AAAGCCCACAAGTCAGTGGCAACC--TT-CAAAGCCCACAAATCAGTGGC-ACCATTTTCC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACC---TT-C
* * *
1416584 AAAGCTCACAAATTAGTGGCACCCTTTTCCAAAGCCCACAAATTAGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
* *
1416641 AAAGCCCACAAATCAGTGGCAACCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
* ** *
1416698 AAAGCCCACAAATCAGTGGCACCATTTTCCAAAGCCCACAAGGCAGCGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
1416755 TAAAGCCCACAA
1 -AAAGCCCACAA
1416767 CTCTGCGATG
Statistics
Matches: 322, Mismatches: 24, Indels: 17
0.89 0.07 0.05
Matches are distributed among these distances:
54 3 0.01
55 20 0.06
56 2 0.01
57 237 0.74
58 35 0.11
59 2 0.01
60 20 0.06
61 3 0.01
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.18
Consensus pattern (57 bp):
AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTC
Found at i:1416641 original size:172 final size:170
Alignment explanation
Indices: 1416355--1416766 Score: 607
Period size: 172 Copynumber: 2.4 Consensus size: 170
1416345 ACCCTTTTCA
* *
1416355 AAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCTCACAAATCAGTGGCAACCTTCAAAGCCCA
1 AAAGCCCACAAGTCAGTGGCAACC-TTTCCAAAGCCCACAAATCAGTGGCAACCTTCAAAGCCCA
* *
1416420 CAAATCAGTGGCACCTTTTTCCAAAGCCCACAAATCAGTGGCAACCTTCAAATCCCACAAATCAG
65 CAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTCAAAGCCCACAAATCAG
*
1416485 TGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCC
130 TGGCAACCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTT-C
1416527 AAAGCCCACAAGTCAGTGGCAACC-TT-CAAAGCCCACAAATCAGTGGC-ACCATTTTCCAAAGC
1 AAAGCCCACAAGTCAGTGGCAACCTTTCCAAAGCCCACAAATCAGTGGCAACC---TT-CAAAGC
* * *
1416589 TCACAAATTAGTGGCACCCTTTTCCAAAGCCCACAAATTAGTGGCAACCTTCAAAGCCCACAAAT
62 CCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTCAAAGCCCACAAAT
1416654 CAGTGGCAACCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTC
127 CAGTGGCAACCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTC
* ** *
1416698 AAAGCCCACAAATCAGTGGC-ACCATTTTCCAAAGCCCACAAGGCAGCGGCAACCTTCTAAAGCC
1 AAAGCCCACAAGTCAGTGGCAACC--TTTCCAAAGCCCACAAATCAGTGGCAACCTTC-AAAGCC
1416762 CACAA
63 CACAA
1416767 CTCTGCGATG
Statistics
Matches: 217, Mismatches: 13, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
168 3 0.01
169 20 0.09
170 5 0.02
171 23 0.11
172 143 0.66
173 2 0.01
174 18 0.08
175 3 0.01
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.18
Consensus pattern (170 bp):
AAAGCCCACAAGTCAGTGGCAACCTTTCCAAAGCCCACAAATCAGTGGCAACCTTCAAAGCCCAC
AAATCAGTGGCACCCTTTTCCAAAGCCCACAAATCAGTGGCAACCTTCAAAGCCCACAAATCAGT
GGCAACCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTC
Found at i:1416802 original size:36 final size:34
Alignment explanation
Indices: 1416750--1416880 Score: 124
Period size: 34 Copynumber: 3.8 Consensus size: 34
1416740 GCAGCGGCAA
*
1416750 CCTTCTAAAGCCCACAACTCTGCGATGC-TCTTTTT
1 CCTTTTAAAGCCCACAACTCTGCG--GCATCTTTTT
*
1416785 CCTTTTTAAAGCCCACAACTCTGTGGCATTCTTTTT
1 CC-TTTTAAAGCCCACAACTCTGCGGCA-TCTTTTT
* * *
1416821 CCTTTT-AAGCTCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAAGCCCACAACTCTGCGGCA-TCTTTTT
* * *
1416855 CCTTTT-AAGTCCATAACTCTGTGGCA
1 CCTTTTAAAGCCCACAACTCTGCGGCA
1416881 CCCTTTTAAG
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
34 49 0.58
35 6 0.07
36 29 0.35
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (34 bp):
CCTTTTAAAGCCCACAACTCTGCGGCATCTTTTT
Found at i:1416845 original size:34 final size:34
Alignment explanation
Indices: 1416777--1416887 Score: 143
Period size: 34 Copynumber: 3.2 Consensus size: 34
1416767 CTCTGCGATG
*
1416777 CTCTTTTTCCTTTTTAAAGCCCACAACTCTGTGGCA
1 CTCTTTTTCC-TTTT-AAGCTCACAACTCTGTGGCA
* *
1416813 TTCTTTTTCCTTTTAAGCTCACAACTCCGTGGCA
1 CTCTTTTTCCTTTTAAGCTCACAACTCTGTGGCA
*
1416847 CTCTTTTTCCTTTTAAG-TCCATAACTCTGTGGCA
1 CTCTTTTTCCTTTTAAGCT-CACAACTCTGTGGCA
*
1416881 CCCTTTT
1 CTCTTTT
1416888 AAGCCCACAA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
33 1 0.01
34 53 0.79
35 4 0.06
36 9 0.13
ACGTcount: A:0.17, C:0.30, G:0.11, T:0.42
Consensus pattern (34 bp):
CTCTTTTTCCTTTTAAGCTCACAACTCTGTGGCA
Found at i:1416993 original size:31 final size:31
Alignment explanation
Indices: 1416888--1416992 Score: 107
Period size: 29 Copynumber: 3.5 Consensus size: 31
1416878 GCACCCTTTT
*
1416888 AAGCC-CACAAGTTGGTAGCACCCCTTTC-A
1 AAGCCACACAAGTTGGTAGCAACCCTTTCAA
** *
1416917 AAGCC-CACAAGTCAGTGGCAA-CC-TTCAA
1 AAGCCACACAAGTTGGTAGCAACCCTTTCAA
1416945 AGAG-CACACAAGTTGGT-GCAACCCTTTCAA
1 A-AGCCACACAAGTTGGTAGCAACCCTTTCAA
1416975 AAGCCCACACAAGTTGGT
1 AAG-CCACACAAGTTGGT
1416993 GGCATCTTCT
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
27 3 0.05
28 9 0.14
29 32 0.51
30 6 0.10
31 13 0.21
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.18
Consensus pattern (31 bp):
AAGCCACACAAGTTGGTAGCAACCCTTTCAA
Found at i:1417179 original size:102 final size:102
Alignment explanation
Indices: 1417003--1417502 Score: 777
Period size: 102 Copynumber: 4.9 Consensus size: 102
1416993 GGCATCTTCT
* *
1417003 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTTATCCTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTTTAAGTCCAAT
* * *
1417068 GTCGCTGGCCTTGAATCAGTACATTGGCACTTTTATC
66 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * *
1417105 TTTAAGTCCAATATTGCTAGCCTTGAATCAGCATCTTGGCGCCTTTGTCATCCTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTTTAAGTCCAAT
*
1417170 GTCGCTGGCCTTGAATCAACACATTGGCACCTTCATC
66 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
*
1417207 TTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCGCCTTTGTCATCCTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTTTAAGTCCAAT
*
1417272 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
66 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* *
1417309 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCATT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTTTAAGTCCAAT
1417374 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
66 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * * * * **
1417411 TTTAAGTCCAATATCACTAGCCTTAAATCAGCATATTGGCACCTTCGTCA-CCTTTAAAACCCAA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTTT-AAGTCCAA
* * *
1417475 TGTTGTTGGCCTTGAGTCAGCACATTGG
65 TGTCGCTGGCCTTGAATCAGCACATTGG
1417503 AATTCTTCTC
Statistics
Matches: 366, Mismatches: 31, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
101 4 0.01
102 362 0.99
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (102 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTTTAAGTCCAAT
GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
Found at i:1417453 original size:49 final size:49
Alignment explanation
Indices: 1417003--1417456 Score: 521
Period size: 49 Copynumber: 8.9 Consensus size: 49
1416993 GGCATCTTCT
* * *
1417003 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTTATCC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCAT-C
* * * * *
1417056 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGTACATTGGCACTTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
1417105 TTTAAGTCCAATATTGCTAGCCTTGAATCAGCATCTTGGCGCCTTTGTCATCC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCAT-C
* * *
1417158 TTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
1417207 TTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCGCCTTTGTCATCC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCAT-C
* * *
1417260 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
*
1417309 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * *
1417361 TTTTAAGTCCATTGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
1417411 TTTAAGTCCAATATCACTAGCCTTAAATCAGCATATTGGCACCTTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1417457 GTCACCTTTA
Statistics
Matches: 343, Mismatches: 46, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
49 156 0.45
50 16 0.05
51 7 0.02
52 11 0.03
53 153 0.45
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.34
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
Found at i:1418212 original size:19 final size:19
Alignment explanation
Indices: 1418188--1418233 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
1418178 TTTCAACGAT
1418188 TTGTATCGATACAAAAATG
1 TTGTATCGATACAAAAATG
* *
1418207 TTGTATCGATACATAAGTG
1 TTGTATCGATACAAAAATG
1418226 TTGTATCG
1 TTGTATCG
1418234 GTATGTATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACAAAAATG
Found at i:1419830 original size:16 final size:16
Alignment explanation
Indices: 1419809--1419842 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1419799 TTTTTCAAAC
1419809 CCAAGCTATCTAGAAT
1 CCAAGCTATCTAGAAT
1419825 CCAAGCTATCTAGAAT
1 CCAAGCTATCTAGAAT
1419841 CC
1 CC
1419843 CTAGGTTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (16 bp):
CCAAGCTATCTAGAAT
Found at i:1421555 original size:43 final size:43
Alignment explanation
Indices: 1421499--1421772 Score: 205
Period size: 43 Copynumber: 6.4 Consensus size: 43
1421489 GAGTACGTTT
*
1421499 TGCT-TTTCGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCC
1 TGCTCTTT-GAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCC
* *
1421542 TGCTCTTTGAGGACTAGAAGGGAAAAGAAGG-AAATG-AA-GACAATCC
1 TGCTCTTTGAGGAC-A-AA-GGAAAA-AAGGAAAACGAAATG-C-GTCC
* * *
1421588 TACTCTTTGAGGACAAAGGAGAAAAGGAAAATGAAATGCGTCC
1 TGCTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCC
* * *
1421631 TGCTCTTTGAGGACAAAAG-AAAGAGGAAAA-TAAAGTGCGTCC
1 TGCTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAA-TGCGTCC
* * *
1421673 TACTCTTTGAGGACAGAAGGGAAAAGAAGG-AAACGAAGTGCCTCC
1 TGCTCTTTGAGGACA-AA-GGAAAA-AAGGAAAACGAAATGCGTCC
* ** *
1421718 GGCTCTTTGAGGAC-AAGTGGGAAGAGGAAAA-G----GCGTCC
1 TGCTCTTTGAGGACAAAG-GAAAAAAGGAAAACGAAATGCGTCC
1421756 TGCTCTTTGAGGACAAA
1 TGCTCTTTGAGGACAAA
1421773 AAAGTGCCAC
Statistics
Matches: 188, Mismatches: 24, Indels: 42
0.74 0.09 0.17
Matches are distributed among these distances:
38 18 0.10
39 2 0.01
41 3 0.02
42 39 0.21
43 50 0.27
44 11 0.06
45 30 0.16
46 31 0.16
47 4 0.02
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.18
Consensus pattern (43 bp):
TGCTCTTTGAGGACAAAGGAAAAAAGGAAAACGAAATGCGTCC
Found at i:1421729 original size:130 final size:127
Alignment explanation
Indices: 1421499--1421773 Score: 319
Period size: 130 Copynumber: 2.1 Consensus size: 127
1421489 GAGTACGTTT
* * *
1421499 TGCT-TTTCGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAGG
1 TGCTCTTT-GAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTACTCTTTGAGGACTAGAAGG
* *
1421563 GAAAAGAAGGAAATGAAGACAATCCTACTCTTTGAGGACAAAG-GAGAAAAGGAAAATGAAATGC
65 GAAAAGAAGGAAACGAAGACAATCCGACTCTTTGAGGAC-AAGTGAGAAAAGGAAAA-G----GC
1421627 GTCC
124 GTCC
* *
1421631 TGCTCTTTGAGGACAAAAG-AAAGAGGAAAA-TAAAGTGCGTCCTACTCTTTGAGGAC-AGAAGG
1 TGCTCTTTGAGGACAAAAGAAAAAAGGAAAACGAAA-TGCGTCCTACTCTTTGAGGACTAGAAGG
* * * * *
1421693 GAAAAGAAGGAAACGAAGTGC-CTCCGGCTCTTTGAGGACAAGTGGGAAGAGGAAAAGGCGTCC
65 GAAAAGAAGGAAACGAAG-ACAATCCGACTCTTTGAGGACAAGTGAGAAAAGGAAAAGGCGTCC
1421756 TGCTCTTTGAGGACAAAA
1 TGCTCTTTGAGGACAAAA
1421774 AAGTGCCACC
Statistics
Matches: 127, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
125 24 0.19
129 4 0.03
130 52 0.41
131 30 0.24
132 14 0.11
133 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.18
Consensus pattern (127 bp):
TGCTCTTTGAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTACTCTTTGAGGACTAGAAGGG
AAAAGAAGGAAACGAAGACAATCCGACTCTTTGAGGACAAGTGAGAAAAGGAAAAGGCGTCC
Found at i:1421953 original size:61 final size:60
Alignment explanation
Indices: 1421745--1421968 Score: 281
Period size: 61 Copynumber: 3.7 Consensus size: 60
1421735 TGGGAAGAGG
* * *
1421745 AAAAGGCGTCCTGCTCTTTGAGGACAAAAAAGTGCCACCAACTCGTGTGGGCTTTGAGAAG-
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC-TGTGGGCTTTGA-AAGA
* * *
1421806 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACT-TGCATGGGCTTTAAAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCTG--TGGGCTTTGAAAGA
* * *
1421867 AGAAGACGTCCTGCTATTTAAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC-TGTGGGCTTTGAAAGA
* **
1421928 AAAAGATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
1421969 TTCGTCCCCA
Statistics
Matches: 142, Mismatches: 16, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
59 2 0.01
60 3 0.02
61 135 0.95
63 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.22
Consensus pattern (60 bp):
AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCTGTGGGCTTTGAAAGA
Found at i:1422444 original size:41 final size:41
Alignment explanation
Indices: 1422393--1422697 Score: 178
Period size: 42 Copynumber: 7.3 Consensus size: 41
1422383 GGTCTCGCTC
* *
1422393 CTTGAGGACAAAGGAAAAAAGAAAAGGAAA-GTGTCCTGCTT
1 CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGC-T
** *
1422434 CTTGAGGACAAAGTCAAAAAG---A-G---TACGTCCTGCTT
1 CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGC-T
* *
1422469 TTTGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCT
1 CTTGAGGACAAAGGAAAAAA-GAAAACGAAATGCGTCCTGCT
* * * * *
1422511 CTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGA-GCGTTCTACT
1 C-TTGAGGAC-A-AA-GGAAAA-AAGAAAACGAA-ATGCGTCCTGCT
* * * *
1422557 CTTTGAGGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTT
1 C-TTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGC-T
* * * * **
1422600 TTTGAGGACAAAAGAAAGAGGAAAATAAAATGCGTCCTGCT
1 CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGCT
* * *
1422641 CTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACT
1 C-TTGAGGACA-AA-GGAAAA-AAGAAAACGAAATGCGTCCTGCT
1422686 CTTTGAGGACAA
1 C-TTGAGGACAA
1422698 GGGGGAAGAG
Statistics
Matches: 203, Mismatches: 40, Indels: 39
0.72 0.14 0.14
Matches are distributed among these distances:
35 26 0.13
36 1 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 1 0.00
41 21 0.10
42 58 0.29
43 22 0.11
44 8 0.04
45 31 0.15
46 29 0.14
47 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (41 bp):
CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGCT
Found at i:1422687 original size:129 final size:130
Alignment explanation
Indices: 1422459--1422705 Score: 372
Period size: 129 Copynumber: 1.9 Consensus size: 130
1422449 AAAAAGAGTA
* * * *
1422459 CGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAAGACTAG
1 CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAAGACTAG
* *
1422524 AAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGAGGACAAAGGGAGAAGGAAAACGAAAT
66 AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGAC-AAGGGAGAAGGAAAACGAAAT
1422589 G
130 G
* * *
1422590 CGTCCTACTTTTTGAGGACAAAAG-AAAGAGGAAAATAAAATGCGTCCTGCTCTTTGAGGAC-AG
1 CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAAGACTAG
* *
1422653 AAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAGGACAAGGGGGAAG
66 AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGACAAGGGAGAAG
1422706 AGGAAAAGGC
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
128 9 0.09
129 42 0.40
130 32 0.30
131 22 0.21
ACGTcount: A:0.38, C:0.14, G:0.29, T:0.19
Consensus pattern (130 bp):
CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAAGACTAG
AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGACAAGGGAGAAGGAAAACGAAATG
Found at i:1422704 original size:45 final size:45
Alignment explanation
Indices: 1422459--1422697 Score: 248
Period size: 42 Copynumber: 5.5 Consensus size: 45
1422449 AAAAAGAGTA
* *
1422459 CGTCCTGCTTTTTGAGGACAAA-GGAAAA-AAGGAAAACGAAATG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
* * * *
1422502 TGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGG-AAATGAAGA-G
1 CGTCCTACTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAAACGAA-ATG
*
1422548 CGTTCTACTCTTTGAGGACAAAGGG---AGAAGGAAAACGAAATG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
* * **
1422590 CGTCCTACTTTTTGAGGACAAA-AG-AAAG-AGGAAAATAAAATG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
* *
1422632 CGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGG-AAACGAAGTG
1 CGTCCTACTCTTTGAGGACA-AAGGGAAAAGAAGGAAAACGAAATG
1422677 CGTCCTACTCTTTGAGGACAA
1 CGTCCTACTCTTTGAGGACAA
1422698 GGGGGAAGAG
Statistics
Matches: 162, Mismatches: 21, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
41 8 0.05
42 57 0.35
43 20 0.12
44 8 0.05
45 33 0.20
46 31 0.19
47 5 0.03
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (45 bp):
CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
Found at i:1422727 original size:38 final size:43
Alignment explanation
Indices: 1422461--1422733 Score: 158
Period size: 42 Copynumber: 6.4 Consensus size: 43
1422451 AAAGAGTACG
* * **
1422461 TCCTGCTTTTTGAGGACAAA-GGAAAA-AAGGAAAACGAAATGTG
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGAAGG-AAAC-AAGTGCA
* * * *
1422504 TCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCG
1 TCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAA-CAAGTGCA
* * * *
1422550 TTCTACTCTTTGAGGACAAAGGG---AGAAGGAAAACGAAATGCG
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGAAGG-AAAC-AAGTGCA
* * * * * *
1422592 TCCTACTTTTTGAGGACAAA-AG-AAAG-AGGAAAATAAAATGCG
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGAAGG-AAA-CAAGTGCA
*
1422634 TCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCG
1 TCCTGCTCTTTGAGGACA-AAGGGAAAAGAAGGAAAC-AAGTGCA
* **
1422679 TCCTACTCTTTGAGGAC-AAGGGGGAAG-AGG-AA-AAG-GCA
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAACAAGTGCA
1422717 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
1422734 TAAAAAATGC
Statistics
Matches: 189, Mismatches: 26, Indels: 35
0.76 0.10 0.14
Matches are distributed among these distances:
38 18 0.10
39 3 0.02
41 9 0.05
42 59 0.31
43 27 0.14
44 7 0.04
45 32 0.17
46 30 0.16
47 4 0.02
ACGTcount: A:0.37, C:0.15, G:0.29, T:0.19
Consensus pattern (43 bp):
TCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAACAAGTGCA
Found at i:1422890 original size:41 final size:41
Alignment explanation
Indices: 1422845--1423149 Score: 178
Period size: 42 Copynumber: 7.3 Consensus size: 41
1422835 GGTCTCGCTC
* *
1422845 CTTGAGGACAAAGGAAAAAAGAAAAGGAAA-GTGTCCTGCTT
1 CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGC-T
** *
1422886 CTTGAGGACAAAGTCAAAAAG---A-G---TACGTCCTGCTT
1 CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGC-T
* *
1422921 TTTGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCT
1 CTTGAGGACAAAGGAAAAAA-GAAAACGAAATGCGTCCTGCT
* * * * *
1422963 CTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGA-GCGTTCTACT
1 C-TTGAGGAC-A-AA-GGAAAA-AAGAAAACGAA-ATGCGTCCTGCT
* * * *
1423009 CTTTGAGGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTT
1 C-TTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGC-T
* * * * **
1423052 TTTGAGGACAAAAGAAAGAGGAAAATAAAATGCGTCCTGCT
1 CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGCT
* * *
1423093 CTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACT
1 C-TTGAGGACA-AA-GGAAAA-AAGAAAACGAAATGCGTCCTGCT
1423138 CTTTGAGGACAA
1 C-TTGAGGACAA
1423150 GGGGGAAGAG
Statistics
Matches: 203, Mismatches: 40, Indels: 39
0.72 0.14 0.14
Matches are distributed among these distances:
35 26 0.13
36 1 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 1 0.00
41 21 0.10
42 58 0.29
43 22 0.11
44 8 0.04
45 31 0.15
46 29 0.14
47 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (41 bp):
CTTGAGGACAAAGGAAAAAAGAAAACGAAATGCGTCCTGCT
Found at i:1423139 original size:129 final size:130
Alignment explanation
Indices: 1422911--1423157 Score: 372
Period size: 129 Copynumber: 1.9 Consensus size: 130
1422901 AAAAAGAGTA
* * * *
1422911 CGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAAGACTAG
1 CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAAGACTAG
* *
1422976 AAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGAGGACAAAGGGAGAAGGAAAACGAAAT
66 AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGAC-AAGGGAGAAGGAAAACGAAAT
1423041 G
130 G
* * *
1423042 CGTCCTACTTTTTGAGGACAAAAG-AAAGAGGAAAATAAAATGCGTCCTGCTCTTTGAGGAC-AG
1 CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAAGACTAG
* *
1423105 AAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAGGACAAGGGGGAAG
66 AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGACAAGGGAGAAG
1423158 AGGAAAAGGC
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
128 9 0.09
129 42 0.40
130 32 0.30
131 22 0.21
ACGTcount: A:0.38, C:0.14, G:0.29, T:0.19
Consensus pattern (130 bp):
CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACAAAATGCGTCCTGCTCTTTGAAGACTAG
AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGACAAGGGAGAAGGAAAACGAAATG
Found at i:1423156 original size:45 final size:45
Alignment explanation
Indices: 1422911--1423149 Score: 248
Period size: 42 Copynumber: 5.5 Consensus size: 45
1422901 AAAAAGAGTA
* *
1422911 CGTCCTGCTTTTTGAGGACAAA-GGAAAA-AAGGAAAACGAAATG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
* * * *
1422954 TGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGG-AAATGAAGA-G
1 CGTCCTACTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAAACGAA-ATG
*
1423000 CGTTCTACTCTTTGAGGACAAAGGG---AGAAGGAAAACGAAATG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
* * **
1423042 CGTCCTACTTTTTGAGGACAAA-AG-AAAG-AGGAAAATAAAATG
1 CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
* *
1423084 CGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGG-AAACGAAGTG
1 CGTCCTACTCTTTGAGGACA-AAGGGAAAAGAAGGAAAACGAAATG
1423129 CGTCCTACTCTTTGAGGACAA
1 CGTCCTACTCTTTGAGGACAA
1423150 GGGGGAAGAG
Statistics
Matches: 162, Mismatches: 21, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
41 8 0.05
42 57 0.35
43 20 0.12
44 8 0.05
45 33 0.20
46 31 0.19
47 5 0.03
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (45 bp):
CGTCCTACTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAATG
Found at i:1423212 original size:452 final size:452
Alignment explanation
Indices: 1422368--1423706 Score: 2588
Period size: 452 Copynumber: 3.0 Consensus size: 452
1422358 GGACAAACGA
1422368 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1422433 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
66 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
1422498 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGA
131 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGA
1422563 GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
196 GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
1422628 AATGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAG
261 AATGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAG
*
1422693 GACAAGGGGGAAGAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
326 GACAAGGGGGAAGAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
*
1422758 GGCTTTGAGAAGAAAAGGCATCCTGCTCTTTGAGTACAGAAAGGTCCTACTTGTTGAGAATG
391 GGCTTTGAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGTCCTACTTGTTGAGAATG
1422820 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1422885 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
66 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
1422950 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGA
131 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGA
1423015 GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
196 GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
1423080 AATGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAG
261 AATGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAG
* *
1423145 GACAAGGGGGAAGAGGAAAAGGCGCCCTGCCCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
326 GACAAGGGGGAAGAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
* *
1423210 GGCTTTAAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGTCCTGCTTGTTGAGAATG
391 GGCTTTGAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGTCCTACTTGTTGAGAATG
*
1423272 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAATTGTCCTGCT
1 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1423337 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
66 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
*
1423402 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTGTTTGA
131 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGA
1423467 GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
196 GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
* *
1423532 AGTGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTGCTCTTTGAG
261 AATGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAG
1423597 GACAAGGGGGAAGAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
326 GACAAGGGGGAAGAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
1423662 GGCTTTGAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGT
391 GGCTTTGAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGT
1423707 ACCACCAACT
Statistics
Matches: 874, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
452 874 1.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (452 bp):
AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTCTTTGA
GGACAAAGGGAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATAA
AATGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTACTCTTTGAG
GACAAGGGGGAAGAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTG
GGCTTTGAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGTCCTACTTGTTGAGAATG
Found at i:1423347 original size:41 final size:40
Alignment explanation
Indices: 1423297--1423414 Score: 120
Period size: 35 Copynumber: 3.0 Consensus size: 40
1423287 GGTCTCGCTC
1423297 CTTGAGGACAAAGGAAAAAAGAAAAGGAAATTGTCCTGCTT
1 CTTGAGGACAAAGGAAAAAAGAAAA-GAAATTGTCCTGCTT
** * *
1423338 CTTGAGGACAAAGTCAAAAAG---AG-TA-CGTCCTGCTT
1 CTTGAGGACAAAGGAAAAAAGAAAAGAAATTGTCCTGCTT
*
1423373 TTTGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCT
1 CTTGAGGACAAAGGAAAAAA-GAAAA-GAAAT-TGTCCTGCT
1423415 CTTTGAAGAC
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
35 26 0.43
36 2 0.03
37 1 0.02
38 1 0.02
39 1 0.02
40 1 0.02
41 20 0.33
43 8 0.13
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (40 bp):
CTTGAGGACAAAGGAAAAAAGAAAAGAAATTGTCCTGCTT
Found at i:1423582 original size:45 final size:45
Alignment explanation
Indices: 1423363--1423637 Score: 251
Period size: 42 Copynumber: 6.4 Consensus size: 45
1423353 AAAAAGAGTA
* *
1423363 CGTCCTGCTTTTTGAGGACAAA-GGAAAA-AAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAGTG
* * * *
1423406 TGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGG-AAATGAAGAG
1 CGTCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAAACGAAGTG
* * * *
1423452 CGTTCTACTGTTTGAGGACAAAGGG---AGAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAGTG
* * * **
1423494 CGTCCTACTTTTTGAGGACAAA-AG-AAAG-AGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAGTG
1423536 CGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGG-AAACGAAGTG
1 CGTCCTGCTCTTTGAGGACA-AAGGGAAAAGAAGGAAAACGAAGTG
**
1423581 CGTCCTGCTCTTTGAGGAC-AAGGGGGAAG-AGG--AA--AAG-G
1 CGTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAGTG
1423619 CGTCCTGCTCTTTGAGGAC
1 CGTCCTGCTCTTTGAGGAC
1423638 TAAAAAATGC
Statistics
Matches: 194, Mismatches: 27, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
38 20 0.10
39 3 0.02
41 9 0.05
42 59 0.30
43 28 0.14
44 7 0.04
45 34 0.18
46 30 0.15
47 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19
Consensus pattern (45 bp):
CGTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAAACGAAGTG
Found at i:1423595 original size:129 final size:130
Alignment explanation
Indices: 1423363--1423609 Score: 347
Period size: 129 Copynumber: 1.9 Consensus size: 130
1423353 AAAAAGAGTA
* * *
1423363 CGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAAGACTAG
1 CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAAGACTAG
* * *
1423428 AAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTGTTTGAGGACAAAGGGAGAAGGAAAACGAAAT
66 AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGAC-AAGGGAGAAGGAAAACGAAAT
1423493 G
130 G
* * *
1423494 CGTCCTACTTTTTGAGGACAAAAG-AAAGAGGAAAA-TAAAGTGCGTCCTGCTCTTTGAGGAC-A
1 CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACGAAA-TGCGTCCTGCTCTTTGAAGACTA
* * *
1423556 GAAGGGAAAAGAAGGAAACGAAGTGCGTCCTGCTCTTTGAGGACAAGGGGGAAG
65 GAAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGACAAGGGAGAAG
1423610 AGGAAAAGGC
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
128 9 0.09
129 43 0.42
130 29 0.28
131 22 0.21
ACGTcount: A:0.37, C:0.14, G:0.30, T:0.19
Consensus pattern (130 bp):
CGTCCTACTTTTTGAGGACAAAAGAAAAAAGGAAAACGAAATGCGTCCTGCTCTTTGAAGACTAG
AAGGGAAAAGAAGGAAACGAAGAGCGTCCTACTCTTTGAGGACAAGGGAGAAGGAAAACGAAATG
Found at i:1423724 original size:61 final size:61
Alignment explanation
Indices: 1423613--1423836 Score: 299
Period size: 61 Copynumber: 3.7 Consensus size: 61
1423603 GGGGAAGAGG
* ** * *
1423613 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTGGGCTTTGAGAAG-
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGA-AAGA
* * * * *
1423674 AAAAGGCGTCCTGCTCTTTGAGTAC-AGAAAGGTACCACCAACTTGCGTGGGCTTTAAAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA
1423735 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA
* **
1423796 AAAAGATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
1423837 TTCATCCCCA
Statistics
Matches: 144, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
60 4 0.03
61 139 0.97
62 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (61 bp):
AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA
Found at i:1423758 original size:122 final size:122
Alignment explanation
Indices: 1423613--1423836 Score: 333
Period size: 122 Copynumber: 1.8 Consensus size: 122
1423603 GGGGAAGAGG
* *
1423613 AAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGTGGGCTTTGAGAAG-AAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTCGTGTGGGCTTTGA-AAGAAAA
* *
1423677 AGGCGTCCTGCTCTTTGAGTACAGAAAGGTACCACCAACTTGCGTGGGCTTTAAAAGA
65 AGACGTCCTGCTCTTTGAGGACAGAAAGGTACCACCAACTTGCGTGGGCTTTAAAAGA
** *
1423735 AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAA
1 AAAAGACGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGAAAAA
* * * *
1423800 GATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
66 GACGTCCTGCTCTTTGAGGACAGAAAGGTACCACCAA
1423837 TTCATCCCCA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
121 3 0.03
122 87 0.97
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (122 bp):
AAAAGACGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGAAAAA
GACGTCCTGCTCTTTGAGGACAGAAAGGTACCACCAACTTGCGTGGGCTTTAAAAGA
Found at i:1424377 original size:43 final size:43
Alignment explanation
Indices: 1424328--1424567 Score: 204
Period size: 43 Copynumber: 5.5 Consensus size: 43
1424318 AAAAAGAGTA
1424328 CGTCCTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTT-GAGGACAAAGAAAAAAAGGAAAACGAAATG
* * * * *
1424371 TGTCCTGCTCTTTGATGACTAGAAGGGAAAAGAAGG-AAATGAAGA-A
1 CGTCCTGCTCTTTGAGGAC-A-AA--GAAAAAAAGGAAAACGAA-ATG
* *
1424417 CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAACGAAATG
* * * *
1424460 CATCCTGCTCTTTGAGGACAAA-AGAAAGAGGAAAA-TAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAACGAAA-TG
* * * * *
1424502 CATCCTGCTTTTTGAGGACAGAAGGGAAAAGAAGG-AAATGAAGTG
1 CGTCCTGCTCTTTGAGGACA-AA--GAAAAAAAGGAAAACGAAATG
1424547 CGTCCTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAGGACAA
1424568 GGGGGAAGAG
Statistics
Matches: 157, Mismatches: 26, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.02
42 38 0.24
43 42 0.27
44 7 0.04
45 26 0.17
46 31 0.20
47 10 0.06
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.20
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAACGAAATG
Found at i:1424551 original size:130 final size:126
Alignment explanation
Indices: 1424330--1424609 Score: 352
Period size: 130 Copynumber: 2.2 Consensus size: 126
1424320 AAAGAGTACG
*
1424330 TCCTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGATGACTAGA
1 TCCTGCTCTTT-GAGGACAAA-AAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGA
1424394 AGGGAAAAGAAGGAAATGAAGAACGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAAT
64 AGGGAAAAGAAGGAAATGAAGAACGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAA-G----
1424459 GCA
124 GCA
* * * *
1424462 TCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAA-TAAA-GTGCATCCTGCTTTTTGAGGAC-AGA
1 TCCTGCTCTTTGAGGACAAAAAAAAAAGGAAAACGAAATGTG--TCCTGCTCTTTGAGGACTAGA
** * * *
1424524 AGGGAAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAGGGGGAAGAGGAAAAGGCA
64 AGGGAAAAGAAGGAAATGAAGAACGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAAGGCA
*
1424587 TCCTGCTCTTTGAGGACTAAAAA
1 TCCTGCTCTTTGAGGACAAAAAA
1424610 GTGCCACCAA
Statistics
Matches: 133, Mismatches: 12, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
125 24 0.18
129 4 0.03
130 60 0.45
131 26 0.20
132 16 0.12
133 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.19
Consensus pattern (126 bp):
TCCTGCTCTTTGAGGACAAAAAAAAAAGGAAAACGAAATGTGTCCTGCTCTTTGAGGACTAGAAG
GGAAAAGAAGGAAATGAAGAACGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAAGGCA
Found at i:1424653 original size:61 final size:61
Alignment explanation
Indices: 1424578--1424799 Score: 252
Period size: 61 Copynumber: 3.6 Consensus size: 61
1424568 GGGGGAAGAG
* * *
1424578 GAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACCCGTGTGGGCTTTGAAAA
1 GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA
* * * *
1424639 GAAAAGGCGTCCTGCTCTTTGAGGAC-AGAAAGGTGCCACCAATTTGCGAGGGCTTT-AAAA
1 GAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA
* * *
1424699 GAAAAAGACGTCCTGCTCTTTGAGGACTAAATGGTGCCACCAACTCGTGTGAGCTTTG-AAA
1 G-AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA
** ** * *
1424760 GAAAAAGATGTCCACCTTTTTGAGGACTGAAAGGTGCCAC
1 G-AAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCAC
1424800 AAATTCGTCC
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
60 6 0.04
61 130 0.95
62 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (61 bp):
GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA
Found at i:1424694 original size:966 final size:970
Alignment explanation
Indices: 1423272--1425496 Score: 3691
Period size: 966 Copynumber: 2.3 Consensus size: 970
1423262 GTTGAGAATG
*
1423272 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAATTGTCCTGCT
1 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
* *
1423337 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTTGAGGACAAAGGAAAAAAGGAAAACGA
66 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGA
* * *
1423402 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTTCTACTGTTTGA
131 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTGCTCTTTGA
* * *
1423467 GGACAAAGG-GAGAAGGAAAACGAAATGCGTCCTACTTTTTGAGGACAAAAGAAAGAGGAAAATA
196 GGACAAAGGAGAAAAGGAAAACGAAATGCATCCTACTCTTTGAGGACAAAAGAAAGAGGAAAATA
1423531 AAGTGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTGCTCTTTGA
261 AAGTGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTGCTCTTTGA
* * *
1423596 GGACAAGGGGGAAGAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACTAACTCGTGT
326 GGACAAGGGGGAAGAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCCGTGT
* * *
1423661 GGGCTTTGAGAAGAAAAGGCGTCCTGCTCTTTGAGTACAGAAAGGTACCACCAACTTGCGTGGGC
391 GGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGGACAGAAAGGTACCACCAACTTGCGAGGGC
* *
1423726 TTTAAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG
456 TTTAAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTG
** * *
1423791 AAAGAAAAAGATGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAATTCATCCCCATACCTCTCG
521 AAAGAAAAAGATGTCCACCTCTTTGAGGACTGAAAGGTGCCACAAATTCATCCCCATACCTCTCG
* * *
1423856 ACCCCTCAATCTAGTAATGCTTTGGGTT-GCTGAAAAATTAGCCCGGAC-AAA-A-CGACTATAG
586 ACCCCTCAATCTAGTAATGCTTTGGGTTATC-GAAAAAATAGCCCGGACAAAATAGCGACTACAG
* *
1423917 TTGCCCCTCTTTGGCTGTTTCTGAGTATCAGGAATAGGGCAAAGACAAAAGAAACCATTTTGTCC
650 CTGCCCCTCTTTGGCTGTTTCTAAGTATCAGGAATAGGGCAAAGACAAAAGAAACCA-TTTGTCC
* *
1423982 GTGAAGGAAAAAAAAGAATGCTTAGCTAAATGCATGTAAAAGGACGACATT-CAA-TTGTTTTTT
714 GTGAAGAAAAAAAAAGAATGCTTAGCTAAATGCATGTAAAAGGACGACATTGAAATTTGTTTTTT
*
1424045 TTGATTTTATGGTTTTCCCTACTAGGTTTTGACATTTTCTAAAGCTTGACCTCCTTAGATAGGTG
779 TTGATTTTATGGTTTTCCCTACTAGGTTTTGACATTTTCTAAAGCTTGACCTCCTTAGATAAGTG
* *
1424110 TTGGTTACTGTAGGCTTTGGAAAGGTTTCCCACCAACTTGTGTGGGC-TTTCTGGGTGCTGCCAA
844 TTGGTTACTGTAGGCTTTAGAAAGGTTTCCCACCAACTTGTGTGGGCTTTTC-GGATGCTGCCAA
*
1424174 CTTATGCAGACTTCAGGAGGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGA
908 CTTATGCAGACTTCAGGAAGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGA
*
1424237 AAAGAGAATGAAATAGGTCTCGCTCCTTGGGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
*
1424302 TCTTGAGGACAAAGTGAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGA
66 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGA
* *
1424367 AATGTGTCCTGCTCTTTGATGACTAGAAGGGAAAAGAAGGAAATGAAGAACGTCCTGCTCTTTGA
131 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTGCTCTTTGA
*
1424432 GGACAAAGGAGAAAAGGAAAACGAAATGCATCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATA
196 GGACAAAGGAGAAAAGGAAAACGAAATGCATCCTACTCTTTGAGGACAAAAGAAAGAGGAAAATA
* * *
1424497 AAGTGCATCCTGCTTTTTGAGGACAGAAGGGAAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGA
261 AAGTGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTGCTCTTTGA
*
1424562 GGACAAGGGGGAAGAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACCCGTGT
326 GGACAAGGGGGAAGAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCCGTGT
* *
1424627 GGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGGACAGAAAGGTGCCACCAATTTGCGAGGGC
391 GGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGGACAGAAAGGTACCACCAACTTGCGAGGGC
*
1424692 TTTAAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAATGGTGCCACCAACTCGTGTGAGCTTTG
456 TTTAAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTG
* * *
1424757 AAAGAAAAAGATGTCCACCTTTTTGAGGACTGAAAGGTGCCACAAATTCGTCCCCATACCTTTCG
521 AAAGAAAAAGATGTCCACCTCTTTGAGGACTGAAAGGTGCCACAAATTCATCCCCATACCTCTCG
* * *
1424822 ACCCCTCCATCTAGTAATGCTTTGGGTTATCGAAAAAATAGCCCGGACAAAATTAGGTGTCTACA
586 ACCCCTCAATCTAGTAATGCTTTGGGTTATCGAAAAAATAGCCCGGACAAAA-TA-GCGACTACA
*
1424887 GCTGCCCCTCTTTGGCTGTTTCTAAGTATCAGGAATAGGGCAAAGACAAAAGACACCATTTGTCC
649 GCTGCCCCTCTTTGGCTGTTTCTAAGTATCAGGAATAGGGCAAAGACAAAAGAAACCATTTGTCC
*
1424952 GTGAAGAAAAAAAAAGAATGCTTAGCTAAATGCATGTAAAAGGACGACATTGAAATTTTTTTTTT
714 GTGAAGAAAAAAAAAGAATGCTTAGCTAAATGCATGTAAAAGGACGACATTGAAA-TTTGTTTTT
*
1425017 TTTGATTTTATGGTTTTCCCTACTAGGTTTTGAGATTTTCTAAAGCTTGACCTCCTTAGATAAGT
778 TTTGATTTTATGGTTTTCCCTACTAGGTTTTGACATTTTCTAAAGCTTGACCTCCTTAGATAAGT
* *
1425082 GTTGGTTACTGTAGGCTTTAGAAAGGTTTGCCACCTACTTGTGTGGGCTTTTCGGATGCTGCCAA
843 GTTGGTTACTGTAGGCTTTAGAAAGGTTTCCCACCAACTTGTGTGGGCTTTTCGGATGCTGCCAA
* *
1425147 CTTATGCAGACTTTAGGAAGGGAAATAAATGGAAGGGTTGTCCCACTTTTTGAGGACAAAGGA
908 CTTATGCAGACTTCAGGAAGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGA
1425210 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1 AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
1425275 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGA
66 TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGA
* *
1425340 AATGTGTCCTACTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCATCCTGCTCTTTGA
131 AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTGCTCTTTGA
* **
1425405 GGACAAA--AGAAAGAGGAAAA-TAAAGTGCATCCTACTCTTTGAGGACCGAAGGGAAAAGAAGG
196 GGACAAAGGAGAAA-AGGAAAACGAAA-TGCATCCTACTCTTTGAGGA-C-AAAAG-AAAG-AGG
*
1425467 -AAATGAAGTGCGTCCTGCTCTTTGAGGACA
255 AAAATAAAGTGCGTCCTGCTCTTTGAGGACA
1425497 AGGGGGAAGA
Statistics
Matches: 1173, Mismatches: 70, Indels: 24
0.93 0.06 0.02
Matches are distributed among these distances:
965 194 0.17
966 397 0.34
967 4 0.00
969 1 0.00
970 57 0.05
971 70 0.06
972 26 0.02
973 383 0.33
974 7 0.01
975 31 0.03
976 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (970 bp):
AAAGAGAATGAAATAGGTCTCGCTCCTTGAGGACAAAGGAAAAAAGAAAAGGAAAGTGTCCTGCT
TCTTGAGGACAAAGTCAAAAAGAGTACGTCCTGCTTTTCGAGGACAAAGAAAAAAAGGAAAACGA
AATGTGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAGGAAATGAAGAGCGTCCTGCTCTTTGA
GGACAAAGGAGAAAAGGAAAACGAAATGCATCCTACTCTTTGAGGACAAAAGAAAGAGGAAAATA
AAGTGCGTCCTGCTCTTTGAGGACAGAAGGGAAAAGAAGGAAACGAAGTGCGTCCTGCTCTTTGA
GGACAAGGGGGAAGAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCCGTGT
GGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGGACAGAAAGGTACCACCAACTTGCGAGGGC
TTTAAAAGAAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTG
AAAGAAAAAGATGTCCACCTCTTTGAGGACTGAAAGGTGCCACAAATTCATCCCCATACCTCTCG
ACCCCTCAATCTAGTAATGCTTTGGGTTATCGAAAAAATAGCCCGGACAAAATAGCGACTACAGC
TGCCCCTCTTTGGCTGTTTCTAAGTATCAGGAATAGGGCAAAGACAAAAGAAACCATTTGTCCGT
GAAGAAAAAAAAAGAATGCTTAGCTAAATGCATGTAAAAGGACGACATTGAAATTTGTTTTTTTT
GATTTTATGGTTTTCCCTACTAGGTTTTGACATTTTCTAAAGCTTGACCTCCTTAGATAAGTGTT
GGTTACTGTAGGCTTTAGAAAGGTTTCCCACCAACTTGTGTGGGCTTTTCGGATGCTGCCAACTT
ATGCAGACTTCAGGAAGGGAAATAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGA
Found at i:1425471 original size:87 final size:89
Alignment explanation
Indices: 1425303--1425497 Score: 265
Period size: 87 Copynumber: 2.2 Consensus size: 89
1425293 AAAGAGTACG
1425303 TCCTGCT-TTTCGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTACTCTTTGAAGACTAGA
1 TCCTGCTCTTT-GAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTACTCTTTGAAGACTAGA
1425367 AGGGAAAAGAAGGAAATGAAGAGCA
65 AGGGAAAAGAAGGAAATGAAGAGCA
* * * * *
1425392 TCCTGCTCTTTGAGGACAAA-AGAAAGAGGAAAA-TAAA-GTGCATCCTACTCTTTGAGGAC-CG
1 TCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAACGAAATGTG--TCCTACTCTTTGAAGACTAG
* *
1425453 AAGGGAAAAGAAGGAAATGAAGTGCG
64 AAGGGAAAAGAAGGAAATGAAGAGCA
1425479 TCCTGCTCTTTGAGGACAA
1 TCCTGCTCTTTGAGGACAA
1425498 GGGGGAAGAG
Statistics
Matches: 96, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
86 3 0.03
87 47 0.49
88 27 0.28
89 16 0.17
90 3 0.03
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.19
Consensus pattern (89 bp):
TCCTGCTCTTTGAGGACAAAGAAAAAAAGGAAAACGAAATGTGTCCTACTCTTTGAAGACTAGAA
GGGAAAAGAAGGAAATGAAGAGCA
Found at i:1425488 original size:45 final size:43
Alignment explanation
Indices: 1425366--1425533 Score: 179
Period size: 42 Copynumber: 4.0 Consensus size: 43
1425356 TGAAGACTAG
*
1425366 AAGGGAAAAGAAGGAAATGAAGAGCATCCTGCTCTTTGAGGA-C
1 AAGGGAAAAG-AGGAAATGAAGTGCATCCTGCTCTTTGAGGACC
** * *
1425409 AAAAG-AAAGAGGAAAATAAAGTGCATCCTACTCTTTGAGGACC
1 AAGGGAAAAGAGG-AAATGAAGTGCATCCTGCTCTTTGAGGACC
*
1425452 GAAGGGAAAAGAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGA-C
1 -AAGGGAAAAG-AGGAAATGAAGTGCATCCTGCTCTTTGAGGACC
**
1425496 AAGGGGGAAGAGG-AA--AAG-GCATCCTGCTCTTTGAGGAC
1 AAGGGAAAAGAGGAAATGAAGTGCATCCTGCTCTTTGAGGAC
1425534 TAAAAAGTGC
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
38 18 0.17
39 3 0.03
41 5 0.05
42 32 0.30
43 12 0.11
44 4 0.04
45 29 0.27
46 3 0.03
ACGTcount: A:0.38, C:0.15, G:0.30, T:0.17
Consensus pattern (43 bp):
AAGGGAAAAGAGGAAATGAAGTGCATCCTGCTCTTTGAGGACC
Found at i:1425583 original size:61 final size:62
Alignment explanation
Indices: 1425517--1425737 Score: 297
Period size: 61 Copynumber: 3.6 Consensus size: 62
1425507 GGAAAAGGCA
* *
1425517 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * * *
1425578 TCCTGCTCTTTGAGGAC-AGAAAGGTGCCACCAATTTGCGTGGGATTT-AAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
* * *
1425639 TCCTGCTCTTTGAGGACTAAATGGTGCCACCAACTCGTGTGAGCTTTG-AAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
** *
1425700 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAATTCGT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
1425738 CCCCATACCT
Statistics
Matches: 139, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
60 6 0.04
61 132 0.95
62 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (62 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGACG
Found at i:1426167 original size:40 final size:41
Alignment explanation
Indices: 1426123--1426224 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
1426113 GTCCCACTTT
* *
1426123 TTGAGGACAAAGGAAAAGAG-AATGAAATAG-GTCTCGCTCC
1 TTGAGGACAAAGGAAAAAAGAAACGAAA-AGTGTCTCGCTCC
* * *
1426163 TTGAGGACAAAGGAAAAAAGAAACGGAAAGTGTCTTGCTTC
1 TTGAGGACAAAGGAAAAAAGAAACGAAAAGTGTCTCGCTCC
**
1426204 TTGAGGACAAAGTCAAAAAGA
1 TTGAGGACAAAGGAAAAAAGA
1426225 GTACGTCCTA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 21 0.40
41 32 0.60
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.18
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAAAGAAACGAAAAGTGTCTCGCTCC
Found at i:1426447 original size:45 final size:43
Alignment explanation
Indices: 1426228--1426467 Score: 195
Period size: 43 Copynumber: 5.5 Consensus size: 43
1426218 AAAAAGAGTA
* * * *
1426228 CGTCCTACTTTTTGAGGACAAAGGAAAA-AAGGAAAATGAAATG
1 CGTCCTGCTCTTTGAAGACAAAGGAAAAGAAGG-AAATGAAGTG
* *
1426271 TGTCCTGCTCTTT-AAGTACTAGAAGGGAAAAGAAGGAAATGAAGAG
1 CGTCCTGCTCTTTGAAG-AC-A-AA-GGAAAAGAAGGAAATGAAGTG
* * *
1426317 CGTCCTGCTCTTTGAGGACAAA-GAAGAA-AAGGAAAACGAAATG
1 CGTCCTGCTCTTTGAAGACAAAGGAA-AAGAAGG-AAATGAAGTG
* * * * *
1426360 CCTTCTGCTCTTTGAGGACAAAAGAAAGAGAA--AAATAAAGTG
1 CGTCCTGCTCTTTGAAGACAAAGGAAA-AGAAGGAAATGAAGTG
* *
1426402 CATCCTGCTCTTTGAAGATAGAAGGGAAAAGAAGGAAATGAAGTG
1 CGTCCTGCTCTTTGAAGACA-AA-GGAAAAGAAGGAAATGAAGTG
*
1426447 CGTCCTGCTCTTTGAGGACAA
1 CGTCCTGCTCTTTGAAGACAA
1426468 TGTGGAAGAG
Statistics
Matches: 157, Mismatches: 25, Indels: 29
0.74 0.12 0.14
Matches are distributed among these distances:
42 32 0.20
43 48 0.31
44 12 0.08
45 31 0.20
46 28 0.18
47 6 0.04
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAAGACAAAGGAAAAGAAGGAAATGAAGTG
Found at i:1426575 original size:61 final size:61
Alignment explanation
Indices: 1426486--1426702 Score: 269
Period size: 61 Copynumber: 3.6 Consensus size: 61
1426476 AGGAAAAGGT
* * * * *
1426486 GTCCTGCTCTTTGACGACTAAAAAGTGCCACCAACTCCTATGGGCTTTGAAAAG-AAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTGCTATGGGCTTT-AAAAGAAAAAGAC
* * *
1426547 GTCTTGCTATTTGAGGACTGAAAGGTGCCACCAACTTGC-GTGGGCTTTAAAAGAAAAAGAC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TGCTATGGGCTTTAAAAGAAAAAGAC
* * * *
1426608 GTCCTGCTCTTTGAGGACT-AAACGGTGCCACCAACTGGTCTGGGCTTTCAAAGAAAAAGAT
1 GTCCTGCTCTTTGAGGACTGAAA-GGTGCCACCAACTGCTATGGGCTTTAAAAGAAAAAGAC
*
1426669 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAA
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAA
1426703 TTTGTCCCTA
Statistics
Matches: 136, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
60 10 0.07
61 122 0.90
62 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTGCTATGGGCTTTAAAAGAAAAAGAC
Found at i:1432368 original size:22 final size:20
Alignment explanation
Indices: 1432323--1432370 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
1432313 TTTGTTGATG
*
1432323 ATTTTGATGAAAAATGAAGT
1 ATTTTGATGAAAAATGAAGA
1432343 ATTTTGAAGTGAAAAAT-AAGA
1 ATTTTG-A-TGAAAAATGAAGA
*
1432364 AATTTGA
1 ATTTTGA
1432371 AAAAGATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 9 0.38
22 8 0.33
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (20 bp):
ATTTTGATGAAAAATGAAGA
Found at i:1432369 original size:21 final size:22
Alignment explanation
Indices: 1432330--1432371 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
1432320 ATGATTTTGA
* *
1432330 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
1432352 TGAAAAAT-AAGAAATTTGAA
1 TGAAAAATGAAGAAATTTGAA
1432372 AAAGATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:1433683 original size:475 final size:473
Alignment explanation
Indices: 1432679--1433763 Score: 1320
Period size: 475 Copynumber: 2.3 Consensus size: 473
1432669 AAAGGCAATT
* * * **
1432679 ATCGATTCTCGCAACAATCTCTACTCTTTTCAAGATTTGGATCCAAAAAAACATTTTTTTCATTA
1 ATCGATTCTCGCAACAATCTCCACTCTTTTCAAGATTAGGATCCAAAAGAACATTCCTTTCATTA
* * *
1432744 GGATA-ATCGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACC-TTGTTTCATAG
66 GGATACAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT-TTTTATAA
* * * * * *
1432807 AATCAAAACTTGTATCTTAAATAAGATAAATAAGAATAGTCATATCAATCCCCATTCTTTCCGAT
129 AATCAAAACTTGTATCTTAAATAAAAAAAACAAGAATACTCATATCAATCCCCATTCTTTCCAAG
* * * *
1432872 AATAGGCACTATAAACGTAGCCTTCTCATAAGGATGCATGATATTGATGCGTTGGTTTCACAAGA
194 AATAGGCACCATAAACGTAGCCTTCTCATAAGGATACACGATATTGATGCGTTGGTTTCACAACA
* * * * * **
1432937 AAGGCATTTCTCGCCAATTTTTATAAAGTCTAAGTTCATGCCTCAAAAGAGCCAAATGTGAATTC
259 AAGGCATTTCCCACCAATTTCTACAAAGTCTAAATTCATGCCTCAAAAGAGCCAAACATGAATTC
* * * *
1433002 TATTATCAATCTCCAATCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAAT
324 TATTATCAATCTCCAATCACTTTATGATTAGGCACAATAAACAAATTCTCCTCATTAAGATAAAT
*
1433067 GATATTGATGATTTTTTTTGCATGGAAATCTTTTCTATACCCTATTTTCCTTAAAATGAAAGTTC
389 GATATTGATGATTTTTTTTGCATGGAAATCTTTTCTATACCCTATTTTCCTTAAAATCAAAGTTC
*
1433132 ATTCACTAAATAAGACAAGT
454 ATTCACTAAATAAGACAAGC
* * * *
1433152 ATCGATTTTCACAACAATCTCCACTATTTTCAAGATTAAGATCCAAAAGAACATTCCTTTCATTA
1 ATCGATTCTCGCAACAATCTCCACTCTTTTCAAGATTAGGATCCAAAAGAACATTCCTTTCATTA
* *
1433217 GGATACATGATATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAAA
* * * *
1433282 TCAAAATTTGTCTCTTAAATAAAAAAAACATGAATACTCATA-CTAATCCCCATTCTTTTCAAGA
131 TCAAAACTTGTATCTTAAATAAAAAAAACAAGAATACTCATATC-AATCCCCATTCTTTCCAAGA
* * * *
1433346 TTAGGCACCATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAACAA
195 ATAGGCACCATAAACGTAGCCTTCTCATAAGGATACACGATATTGATGCGTTGGTTTCACAACAA
* * ** ** *
1433411 AGGCTTTTTCCCCACCAATTTCTGCAAAGTCTAAATTTGTGCCTCAAATTAGCCAAACATGGATT
260 AGGC-ATTT-CCCACCAATTTCTACAAAGTCTAAATTCATGCCTCAAAAGAGCCAAACATGAATT
* * ** * ** * *
1433476 CT-TGTA-CTGATCTTCTTTCACTTTATGATTCGGCACTGTAAGCAAATTCTCCTCATTAAGATT
323 CTAT-TATC-AATCTCCAATCACTTTATGATTAGGCACAATAAACAAATTCTCCTCATTAAGATA
* * *
1433539 AATGATATTGAT-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAA
386 AATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTATACCCTATTTTCCTTAAAATCAAA
* *
1433603 GTTCA-TCCCTTAAATAAGACTAGC
450 GTTCATTCAC-TAAATAAGACAAGC
* * * * *
1433627 CTCGATTCTCGCAACAATTTCCACTCTTTTCAAGATTGGGATCTAAAAGCACATTCCTTTCATTA
1 ATCGATTCTCGCAACAATCTCCACTCTTTTCAAGATTAGGATCCAAAAGAACATTCCTTTCATTA
* * ** * * *
1433692 GGATACATGACATTTATGCCTTGGTGTCATAAGAAAAGCATTTCTTTTCACCATTTTTGATCTAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT--TATAA
1433757 AATCAAA
129 AATCAAA
1433764 GGCTCTTTTC
Statistics
Matches: 517, Mismatches: 84, Indels: 18
0.84 0.14 0.03
Matches are distributed among these distances:
472 1 0.00
473 223 0.43
474 17 0.03
475 265 0.51
477 11 0.02
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (473 bp):
ATCGATTCTCGCAACAATCTCCACTCTTTTCAAGATTAGGATCCAAAAGAACATTCCTTTCATTA
GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAAA
TCAAAACTTGTATCTTAAATAAAAAAAACAAGAATACTCATATCAATCCCCATTCTTTCCAAGAA
TAGGCACCATAAACGTAGCCTTCTCATAAGGATACACGATATTGATGCGTTGGTTTCACAACAAA
GGCATTTCCCACCAATTTCTACAAAGTCTAAATTCATGCCTCAAAAGAGCCAAACATGAATTCTA
TTATCAATCTCCAATCACTTTATGATTAGGCACAATAAACAAATTCTCCTCATTAAGATAAATGA
TATTGATGATTTTTTTTGCATGGAAATCTTTTCTATACCCTATTTTCCTTAAAATCAAAGTTCAT
TCACTAAATAAGACAAGC
Found at i:1434056 original size:352 final size:351
Alignment explanation
Indices: 1433436--1434092 Score: 861
Period size: 352 Copynumber: 1.9 Consensus size: 351
1433426 CAATTTCTGC
* * * * * * * *
1433436 AAAGTCTAAATTTGTGCCTCAAATTAGCCAAACATGGATTCTTGTACTGATCTTCTTTCACTTTA
1 AAAGTCTAAATTTGAGCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATCCACTTTA
* * * * * * *
1433501 TGATTCGGCACTGTAAGCAAATTCTCCTCATTAAGATTAATGATATTGATATTTTCTTTTGCATG
66 TGATTAGGCACTATAAACAAATTCTCCACATTAAGATAAATGATATTGATATCTTCTTTTGCATA
* * * * *
1433566 GAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACTAGCCTCG
131 GAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACTAACCTCA
* * * *
1433631 ATTCTCGCAACAATTTCCACTCTTTTCAAGATTGGGATCTAAAAGCACATTCCTTTCATTAGGAT
196 ATTCTCCCAACAATCTCCACTCTTTTCAAGATTGGGATCAAAAAGCACATTCCCTTCATTAGGAT
* *
1433696 ACATGACATTTATGCCTTGGTGTCATAAGAAAAGCATTTCTTTTCACCATTTTTGATCTAAAATC
261 ACATGACATTGATGCCTTGGTGTCACAAGAAAAGCATTTCTTTTCACCATTTTTGATCTAAAATC
1433761 AAAGGCTCTTTTCCCTCAGTTTTTCT
326 AAAGGCTCTTTTCCCTCAGTTTTTCT
* * * *
1433787 AAAGTCTAAGTTTGAGCATCAAATGAGACAAACATGGATTCTAGTAATTATCTTCATCCATTTTG
1 AAAGTCTAAATTTGAGCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATCCACTTTA
* * * *
1433852 TGATTAGGCACTATAAACACATTTTCCACATTACGATAAATGATATTGATGTCCTTCTTTTGCAT
66 TGATTAGGCACTATAAACAAATTCTCCACATTAAGATAAATGATATTGATAT-CTTCTTTTGCAT
* *
1433917 AGAAATGTTTTCTTAGCCTTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGAC-AACCAT
130 AGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACTAACC-T
* * * *
1433981 CAATTCTCCCAACAATCTCCACTCTCTTT-AGGATTTGTATCCAAAAAG-ACATTCCCTTCATTT
194 CAATTCTCCCAACAATCTCCACTCT-TTTCAAGATTGGGAT-CAAAAAGCACATTCCCTTCATTA
* * * *
1434044 GGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTC
257 GGATACATGACATTGATGCCTTGGTGTCACAAGAAAAGCATTTCTTTTC
1434093 GTCGTTTTTG
Statistics
Matches: 258, Mismatches: 44, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
351 99 0.38
352 150 0.58
353 9 0.03
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (351 bp):
AAAGTCTAAATTTGAGCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATCCACTTTA
TGATTAGGCACTATAAACAAATTCTCCACATTAAGATAAATGATATTGATATCTTCTTTTGCATA
GAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACTAACCTCA
ATTCTCCCAACAATCTCCACTCTTTTCAAGATTGGGATCAAAAAGCACATTCCCTTCATTAGGAT
ACATGACATTGATGCCTTGGTGTCACAAGAAAAGCATTTCTTTTCACCATTTTTGATCTAAAATC
AAAGGCTCTTTTCCCTCAGTTTTTCT
Found at i:1439171 original size:475 final size:475
Alignment explanation
Indices: 1433780--1448543 Score: 10187
Period size: 475 Copynumber: 30.6 Consensus size: 475
1433770 TTTCCCTCAG
* * * * **
1433780 TTTTTCTAAAGTCTAAGTTTG-AGCATCAAATGAGACAAACATGGATTCTAGTAATT-ATCT-TC
1 TTTTTGTAAAGTCTAAGTTCGTA-CCTCAAATGAGCCAAATGTGGATTCTAGT-ATTGATCTCT-
* * * * * *
1433842 ATCCATTTTGTGATTAGGCACTATAAACACATTTTCCACATTACGATAAATGATATTGATG-TCC
63 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGAT-T
* * * * *
1433906 TTCTTTTGCAT-AGAAATGTTTTCTTAGCCTTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAT
127 TTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAAT
* * ** * * *
1433970 AAGACAACCATCAATTCTCCCAACAATCTCCACTCTCTTT-AGGATTTGTATCCAAAAAGACATT
191 AAGACAAGCATCGATTCTCGTAACAATCTCCA-T-TCTTTCAAGATTGGTATCCAAAAACACATT
* * *
1434034 CCCTTCATTTGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-TCGTCGT
254 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGT
* * *
1434098 TTTTGGTAGAATCAAAGTTTGTCTC-GAAATAAGACAAACAAGAATAG-CTATACTAATCCCCAT
318 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-ATACTAATCCCCAT
* * * * * * *
1434161 TTTTTTCGGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATACATGTTATAGATGCTTTGA
382 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
1434226 TTTCACAAGAAAGGCTTTCTTCCCACCAA
447 TTTCACAAGAAAGGCTTTCTTCCCACCAA
* *
1434255 TTTTCGTGAAA-TCTAAGTTC--ACACTGCAAATGAGCCAAATGTGGATTCTAGTGTTGATCTCT
1 TTTTTGT-AAAGTCTAAGTTCGTAC-CT-CAAATGAGCCAAATGTGGATTCTAGTATTGATCTCT
* * * *
1434317 ATTCATTCTGTGATTAGGCACTATAAACAGATTCTCCTCATTAAGATTAACGATATTAATGATTT
63 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * * *
1434382 TCTTTTGCATGGAAATCTTTTCTTTGTCCTTTTTTCTTTAAAATCAAAGTTTATCCCTTAAATAA
128 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * * *
1434447 GACAAGCATCGATTCTCGTAATAATCT-C--T-TTACAGGATTGGGA-ACATAAAACACATTTCC
193 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTCAAGATTGGTATCCA-AAAACACATTCCC
* ** * * * * *
1434507 TTCGTTAAAATACATGATAATGATGCTTTGGTGTCACAAGAATAGCTTTTCTTT-TCATCGTTAT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTT
* * *
1434571 TGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATACTCATACTATTCCCCATTCTT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * * *
1434636 TTCAGTATT-GGCACTATGAACGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
386 TTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* *
1434700 GCAAGAAACGCTTT-TTCCACACCAA
451 ACAAGAAAGGCTTTCTTCC-CACCAA
* * * **
1434725 GTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCTAAACATGGATTCTAGTATTGATCT-TCAT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCT-AT
1434789 TCATTTTGTGATTAGGCA-TAATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
65 TCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * *
1434853 CATTT-CAAT-AGAAATCTTATCTTTGCCCTATTTTTTTTAAAATCAAAGTTCATCCTTTAAATA
129 CTTTTGC-ATGA-AAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA
* * *** *
1434916 AGATAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-ACCCAAAAATTGAGTC
192 AGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATT-GGTATCCAAAAACACATTC
* * * * * *
1434980 CTTTCCATTAAGATACGTGACATTGATGCTTTTGTGTTGCAAGAAACGCTTTTCTTTC-CATCGT
255 CCTT-CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGT
* * * * * * * * * *
1435044 TTTTGACAAAATCAAAGTTTTTCTCTTAAGTAAGAGAAACATTAATACTCGTACTATTTCCCATT
318 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * *
1435109 CTTTTCAAGATTAGGCACCATAAA-TAGAGTCTTTTCACT-AGGATAC-CTGATATTGGTGCTTT
383 CTTTTCAGGATTAGGCACCATAAACT-TAGTCTTCTCA-TAAGGATACAC-GATATTGATGCTTT
*
1435171 GGTTTCCCAAGAAAGAGGCTTT-TT-CCACCAA
445 GGTTTCACAAG-AA-AGGCTTTCTTCCCACCAA
* * * ** * * *
1435202 TTTTTGTAAAGTCTAAGTTCGTGCCTAAAATG-TCACAAACATGGATTCTAGCACTGAT-TTTCA
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGC-CAAATGTGGATTCTAGTATTGATCTCT-A
* * * * *
1435265 TTCATTTTTTGATTAGGCATTATAAACTCATTCTCCTCATTAGGATAAATGATATTGATGA----
64 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * *
1435326 ----TG---G-AAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCACCCCTTAAATAAG
129 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * * * * ** *
1435383 ACAAGCTTCGATTATCGCAATAATCTCCACTATTTCTAAGATT-TTGATCCTGAAAGACATTCCC
194 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTC-AAGATTGGT-ATCCAAAAACACATTCCC
* * * * ** *
1435447 TTCATTAGGATACATGAGATTGATGCTTTCGTATCGTAAGAAAAGCTTTTAATT-TCACCATTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTT
* * * * * *
1435511 TGACAGAATCAAAGTATATCTATTAAGTAAGACAAACATGAATAGTCATGCTAATCCCCATTCTT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * ** *
1435576 TTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAAGATACACGAAATTGATATTTTGGTTTT
386 TTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* *
1435641 ACAAGAAAAGCTTTTTTCCCACCAA
451 ACAAGAAAGGCTTTCTTCCCACCAA
* * * ** * *
1435666 TTTTTGTAAAGTCTAAATTCGTGCCTAAAATGA-CACAAACATGGATTCTA-TCAATGAT-TTTC
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGC-CAAATGTGGATTCTAGT-ATTGATCTCT-
* *
1435728 ATTCATTTTGTGATTAGGCACTATAAAACACATTCTCCTCATTAGGATAAATGATATTGATGA--
63 ATTCATTTTGTGATTAGGCACTAT-AAACACATTCTCCTCATTAAGATTAATGATATTGATGATT
* * * * *
1435791 ------TG---G-AAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAGAGTTCACCCCTTAAAAA
127 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * * * * *
1435846 AGACAAGCTTCGATTATCGCAATAATCTCCACTATTTCCAAGATT-CTGATCCTAAAGCACATTC
192 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTT-CAAGATTGGT-ATCCAAAAACACATTC
* * * ** *
1435910 CCTTCATTAGGATACATGACATTGATGCTTTGGTATCGTAAGCAAAGCTTTTAATT-TCACCATT
255 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTT
* * ** *
1435974 TTCGACAGAATCAAAGTATT-TCTCTTAAATAAGACAAATGTGAATAGTCATGCTAATCCCCATT
319 TTTGATAGAATCAAAGT-TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
** * * * **
1436038 CTTTTTGGGATTAGGCACCATAAACGTAGTCTTTTCATAAGGATACACGAAATTGATATTTTGGT
383 CTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
* * * *
1436103 TTTACAAGAAAAGCTTTTTTCTCACCAA
448 TTCACAAGAAAGGCTTTCTTCCCACCAA
* * * * * ** * * *
1436131 TTTTTGTAAAGTCTAAATTCATGCCTAAAATGA-CACGAACATGGATTCTAGCAATGAT-TTTCA
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGC-CAAATGTGGATTCTAGTATTGATCTCT-A
* * *
1436194 TTCATTTTGTGATTAGGCACTATAAAACACATTCTCTTCATTAGGATAAATGATATTGATGA---
64 TTCATTTTGTGATTAGGCACTAT-AAACACATTCTCCTCATTAAGATTAATGATATTGATGATTT
* * *
1436256 -----TG---G-AAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCACCCCTTAAATAA
128 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * * * * *
1436312 GACAAGCTTCGATTATCGCAATAATCTCCACTATTTCCAAGATT-CTGATCCTAAAACACATTCC
193 GACAAGCATCGATTCTCGTAACAATCTCCATTCTTT-CAAGATTGGT-ATCCAAAAACACATTCC
* * * ** *
1436376 CTTCATTAAGATACATGACATTGATGCTTTGGTATCGTAAGAAAAGCTTTT-AATCTCACCATTT
256 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTT
* * * ** *
1436440 TCGACAGAATCAAAGTGTT-TCTCTTAAATAAGACAAATATGAATAGTCATGTTAATCCCTATTC
320 TTGATAGAATCAAAGT-TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * *
1436504 TTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-ATTTGATGTTTTGGT
384 TTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATA-TTGATGCTTTGGT
* *
1436568 TTTACAAGAAAAGCTTTCTTCCCACCAA
448 TTCACAAGAAAGGCTTTCTTCCCACCAA
* * * * *
1436596 TTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAATGTGGATTCTATTATTGATCACCATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * * * * *
1436661 CATTTTGTGAATAAGTATTATAAACACATTCTACTC-TTCAAGATTAATGATATTAATGATTTTC
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AAGATTAATGATATTGATGATTTTC
* **
1436725 TTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCATTAAAATCAAAGTTCATCTTTTAAAATAAG
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* * *
1436789 GCAAACATCGATTCTCGTAACAATATCCATTCCTTTCAAGATTAGG-A-CTCAAAAACACATTCC
194 ACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTCAAGATT-GGTATC-CAAAAACACATTCC
* * * *
1436852 CTTCATTAGGATACATGCCATTAATGCTTTGGGGTCGCACGAAAAGCTTTTCTTTC-CACCGTTT
256 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTT
* * *
1436916 TTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAT-GCTAATAC-ACTTCCCCATT
320 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG-TCATACTA-ATCCCCATT
* * * * * * *
1436979 CTTTTCAAGATTAGGCACCATAAACATAATCTTCTCGTTAGGATAC-CTGATATTGGTGCTTAGG
383 CTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC-GATATTGATGCTTTGG
* * * *
1437043 TTTTGA-AAGAAAGCCTTTCTTCCAACAAA
447 -TTTCACAAGAAAGGCTTTCTTCCCACCAA
* * * * * * * * *
1437072 TTTTTGAAAAGTCTAAGTTCATGCCTCAAATTAGACAAACT-TAGATTCTAGTAATAATCTTTAT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAA-TGTGGATTCTAGTATTGATCTCTAT
* * * * *
1437136 TTATTTTGTGATTAGGCACTATAAACACATTCT-CTCTTTAGGATAAATGATATTAATGATTTT-
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * *
1437199 TTTTGCATGGAAATATTTT-TTTGCCCTATATTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * * * *
1437263 CTAGCATCGATTCTTGCAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAAACACATTTCTTT
195 CAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCTT
* * *
1437328 CATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTATTTC-CACCGTTTCTG
259 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTTTG
* * * *
1437392 ATAGAATCAAAGTTTGTCTATTAAATAAGACAAACAAT-AATACTCATGCTATTCCCCATTCTTT
323 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATAGTCATACTAATCCCCATTCTTT
* * * *
1437456 TCAAGATTAGGCACCATAAA-TATAGTCTTCTCATTAGGATACTCGATATTGGTGCTTTGGTTTC
387 TCAGGATTAGGCACCATAAACT-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* * *
1437520 ATAAGAAAGGCTTTTTTTCCACCAA
451 ACAAGAAAGGCTTTCTTCCCACCAA
* * * * ** ** *
1437545 TTTTTCTAAAGTCTAAGTTCG-AGCATCTAATGGGATAAACATGGATTCTAGTAATGATCT-TCA
1 TTTTTGTAAAGTCTAAGTTCGTA-CCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCT-A
* * * * *
1437608 TTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTACGATAAACGATATTGATGACTTT
64 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTT
* * * ** * *
1437673 -TTTTCCATGGAAATCTTTTC-TTGAACCTACCTTCCTTAAAATCAAAGTTCAACCCTTAAATAA
129 CTTTTGCATGAAAATCTTTTCTTTG-CCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAA
* ** * * *
1437736 GACAACCATCGATTCTCACAACAATCTCC-TCTCTTTTTAAGATTGCTACCCAAAAACACATTCC
193 GACAAGCATCGATTCTCGTAACAATCTCCAT-TC-TTTCAAGATTGGTATCCAAAAACACATTCC
* * * * *
1437800 CTTCATTAGGATAAATGTCATTGATGTTTTGGTGTCACAAGAAAAGC-TTTCATTCT-ACCGTTT
256 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTT
* * * * *
1437863 TTGATAGATTCAAAGTTTATCTCTTAAATAAGTCAAACAAGAATAGTCATACTAATCCCTATTCT
320 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * ** *
1437928 TTTCGGGATTAGGCACCATAAACTTAGTTTTCTCATAAGGATACAAGATATAAATGCCTTGGTTT
385 TTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* **
1437993 CGCAAGAAAGGCTTTCTTCCCATTAA
450 CACAAGAAAGGCTTTCTTCCCACCAA
* * ** *
1438019 TTTTTGCAAAGTCTAAGTTCGTACCTCAAATGAGCTAAATGCAGATTCTAGAATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
1438084 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATT-ATTGATTTTC
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGA-TGATTTTC
* * * *
1438148 TTTTGCATGGAAATCTTTTCTGTGCCCTTTTTTCTTTAAAATCAAAGTTCATCCCTTAAATATGA
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * *** * * * *
1438213 CAAGCATCGATTCGCGTAACAAACTACTTTGCTTTTGGGACTAGG-AACCTAAAACACATTCCTT
195 CAAGCATCGATTCTCGTAACAATCTCCATT-CTTTCAAGA-TTGGTATCCAAAAACACATTCCCT
* ** * * *
1438277 TCGTTAGGATACATGGTAGTGATGCTTTGGTGTCGCAAGAATAGCTTTTCTTT-TAACCGTTTTT
258 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTTT
* * * * *
1438341 TATAGAATCAAAGTTTGTCTATTAAATAAGATAAACATGAATACTCATACTAATCCACATTC-TT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * *
1438405 TCTAGGATTAGGCACCATGAACGTAGTCTTCTCATTAGGATACATGATATTGACGCTTTGATTTC
387 TC-AGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
*
1438470 GCAAGAAAGGCTTT-TTCCCCACCAA
451 ACAAGAAAGGCTTTCTT-CCCACCAA
* * ** *
1438495 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATAAGCGAAACATGGATTCTAGTATTGATCTCCATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* *
1438560 CATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAAGATTAATGATATTGATAATTTTCT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
* *
1438625 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCTCTTAAA-ATCGA
131 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA-AGA
* * **
1438689 TAAGCATCGATTCTCATAACAATCTTTATTCTTTACAAGATTGGTATCCAAAAACACA-TCCCTT
195 CAAGCATCGATTCTCGTAACAATCTCCATTCTTT-CAAGATTGGTATCCAAAAACACATTCCCTT
*
1438753 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTCTTTCTGCAC-TTTTTG
259 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCT-CACGTTTTTG
* *
1438817 ATAGAATCAAATTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTT
323 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * *
1438882 CAGGATTAGGCACCGTAAACTTAGTTTTCTCATAAGGATACACGATATAGATGCCTTGGTTTCAC
388 CAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCAC
1438947 AAGAAAGGCTTTCTTCCCACCAA
453 AAGAAAGGCTTTCTTCCCACCAA
* * *
1438970 TTTTTGTAAAATCTAAGTTCGTACCTCAAACGAGCCAAATGTGTATTCTAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * * *
1439035 CATTTTGTGATTATGCACTACAAACACATCCTCCTCATTAAGATTAATGATATTGATGATTTTCA
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
* * *
1439100 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTTTTTAAAATCAAAGTTCATCTCTTAAA-ATCGA
131 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA-AGA
* * *
1439164 CAAGCATCGATTCTCGTAACAATCTCGATTCTTTATAAGATTGGTATCCAAAAACACATTCCATT
195 CAAGCATCGATTCTCGTAACAATCTCCATTCTTT-CAAGATTGGTATCCAAAAACACATTCCCTT
** *
1439229 CATTAGGATACATGACAACGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTGC-CATTTTTG
259 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCT-CACGTTTTTG
* *
1439293 ATAGAAAT-AAAGTTTGTCTCTTAAAAAAGACAAACAAGAATAGTCATACTAAT-CCCATTCTTT
323 ATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * *
1439356 TCAGGATTAGGCACCGTAAACTTAGTTTTCTCATAAGGATACACGATATAGATGCCTTGGTTTCA
387 TCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
*
1439421 AAAGAAAGGCTTTCTTCCCACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* *
1439445 TTTTTGTAAAATCTAAGTTCGTACCTCAAATGAGCCAAATGTAGATTCTAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * * * *
1439510 CATTTTGTGATTATGAACTATAAACACATTCTCCTCATTAAGATTAATGACATTAATAATTTTCT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
1439575 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGAC
131 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * * * * *
1439640 AAGCATCAATTCTCGTAACAATCTACTTTGCTTTTAGGATTGGGAACCTAAAACCCATTCCCTTC
196 AAGCATCGATTCTCGTAACAATCTCCATT-CTTTCAAGATTGGTATCCAAAAACACATTCCCTTC
* * * * * * * *
1439705 GTTACGATACATGATAATGAT-CTTTTGGTCTCACAGGAATAGCTTTTCTTTCCTC-CGTTTTTG
260 ATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTT-CTCACGTTTTTG
* * * * * * *
1439768 ACAGAATCAAAGTTTATTTGTTAAATAAGACAAACATGAATATTTATACTACTCCCCATTCTTTT
323 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * *
1439833 CAGGATTAGGCACCATGAACGTAGTCTTTTCATTAA-GAGACACTG-TATTGATGCTTTGGTTTC
388 CAGGATTAGGCACCATAAACTTAGTCTTCTCA-TAAGGATACAC-GATATTGATGCTTTGGTTTC
* * *
1439896 GCTAGAAAAGCTTT-TTCCCCACCAA
451 ACAAGAAAGGCTTTCTT-CCCACCAA
* * ** * * **
1439921 TATTTGTAAAGTCTTAGTTCGTGTCTCAAATGAGCCAAACAG-GGATTCTAGCATTGATCTCCCT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAA-TGTGGATTCTAGTATTGATCTCTAT
*
1439985 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGACTTT-
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * * * *
1440049 TTTTGCATGAAAATCTTTTCTTTGCCCGATTTTATTCAAAATCAACGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* **
1440113 ACAAGCACCGATTCTCAAAACAATCTCCATTCTTTTCAAGATTGGTATCC-AAAA-ACATTCCCT
194 ACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCT
* * * *
1440176 TCATTATGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGTCGTTTCT
258 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTTT
* * * * *
1440240 GATAAAATCAATGTTTGTCTCTTAAATAAGACAACCAAGAATAGTCATACTAATCCCTATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * **
1440305 TCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGATATAGATGCCTTGGTTTTG
387 TCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
* *
1440370 CATGAAAGGCTTTCATCCCACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* * * * *
1440394 TTTTTGCAAAGTCTAAGTTCGCACCCCAAATGAGCCAAAAGTGGATTATAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * *
1440459 CATTTTGTGATTAAGCACTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGACTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA-TTTTC
* * * *
1440524 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTCAAAATCAAAGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
*
1440588 ACAAGCTATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATTGGTATCCAAAAACACATTCCC
194 ACAAGC-ATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCC
* *
1440653 TTCATTAGGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGCCGTTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTT
* * * * * *
1440717 TGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACAAGAATAGTTATACTAATCCCTATTCCT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * * * ** ** * * * *
1440782 TTC---TTTTGTC-TCTTAAA--TAG--GACAAACAAGAATAGTCA-TACTAATCCCT-ATTCCT
386 TTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA--CACGA-T-AT---TGA-TGCT
* * * *
1440837 TTCGGGATTAGGCATCATA-AACTTAGTCTTCTCGTAAGGAT-ACACGATA
443 TT--GG-TT--TCA-CA-AGAA---AGGCTT-TC-T-----TCCCACCA-A
* * ** * * * ** ** * *
1440886 TAGATGCCTTGGTTTCACAAG--AAAGGCTTTTTCCCACCAATTTTTGTAAAATCT-AAGTTCGT
1 T---T---TT--TGT-A-AAGTCTAA-G-TTCGTACC-TCAA-ATGAGCCAAATGTGGA-TTC-T
* * * * * *
1440948 ACCTCAAATGAGC-CAAATGTGGATTCTAGTATTGATCTCTATTCATTTTTTGATTATGCACTAT
50 A-GT--ATTGATCTC-TAT-T-CA-T----T-TTG----------------TGATTAGGCACTAT
* * * *
1441012 AAACACATTCTCCTCATTAATATTAATGACATTAATAATTTTCTTTTGCATGAAAATCTTTTCTT
87 AAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * *
1441077 TGCCCTATTTTCTTTAAAGTCAAAGTTCATCTCTTAAATAAGACAAGCATCAATTCTCGTAACAA
152 TGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAA
* * * * * * * * * * * *
1441142 TCTACTTTGCTTTTAGGATTGGGAACCTAAAACCCATTCCCTTCGTTACGATACATGATAATGAT
217 TCTCCATT-CTTTCAAGATTGGTATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * *
1441207 -CTTTTGGTCTCGCAAGAATAGCTTTTCTTTC-CACCGTTTTTGACAAAATCAAAGTTTATTTGT
281 GC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * * *
1441270 TAAATAAGACAAACATGAATATTTATACTACTCCCCATTCTTTTCAGGATTAGGCACCATGAACG
344 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT
* * * * *
1441335 TAGTCTTTTCATTAA-GAGACACTG-TATTGATGCTTTGGTTTCGCTAGAAAAGCTTT-TTCCCC
409 TAGTCTTCTCA-TAAGGATACAC-GATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTT-CCC
1441397 ACCAA
471 ACCAA
* * ** * * **
1441402 TTTTTGTAAAGTCTTAGTTCATGTCTCAAATGAGCCAAACAG-GGATTCTAGCATTGATCTCCCT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAA-TGTGGATTCTAGTATTGATCTCTAT
*
1441466 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGACTTT-
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * * *
1441530 TTTTGCATGAAAATCTTTTCTTTGCCCGATTTTCTTCAAAATCAACGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* **
1441594 ACAAGCACCGATTCTCAAAACAATCTCCATTCTTTTCAAGATTGGTATCC-AAAA-ACATTCCCT
194 ACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCT
* * * *
1441657 TCATTATGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGTCGTTTCT
258 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTTT
* * * *
1441721 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAACCAAGAATAGTCATACTAATCCCTATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * **
1441786 TCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGATATAGATGCCTTGGTTTTG
387 TCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
* *
1441851 CATGAAAGGCTTTCATCCCACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* * * *
1441875 TTTTTGCAAAGTCTAAGTTCGCACCCCAAATGAGCCAAAAGTGGATTCTAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * *
1441940 CATTTTGTGATTAAGCACTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGACTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA-TTTTC
* * * *
1442005 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTCAAAATCAAAGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
*
1442069 ACAAGCTATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATTGGTATCCAAAAACACATTCCC
194 ACAAGC-ATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCC
* * *
1442134 TTCATTAGGATACATGACATTGATGCTTTTGTGTCGTAAGAAAAGCTTTTCTTTC-CGCCGTTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTT
* * * * *
1442198 TGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACAAGAATAGTTATACTAATCCCTATTCCT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CC----CCA
*** * * * * **** *
1442263 TTCTTTTGTCTCTCAAATAGGACAAACA-AGAA--TAGTCATACTAATCCCTATTC-C--T-TTC
381 TTC--TT-T-TCAGGATTAGG-C-ACCATA-AACTTAGTC-TTCTCATAAGGATACACGATATT-
* * * ** * * * * *
1442321 G-GGATTAGGCATCATAA-ACTTAGTCTTCTCGTAAGGAT-ACACGATA
437 GATGCTTTGGTTTCACAAGA--AAGGCTT-TC-T-----TCCCACCA-A
* * ** * * * ** ** * *
1442367 TAGATGCCTTGGTTTCACAAG--AAAGGCTTTTTCCCACCAATTTTTGTAAAATCT-AAGTTCGT
1 T---T---TT--TGT-A-AAGTCTAA-G-TTCGTACC-TCAA-ATGAGCCAAATGTGGA-TTC-T
* * * * * * * *
1442429 ACCTCAAATGAGC-CAAATGTGGATTCTAGT-ATT-GATCTCTATTCATTTTTTGATTATGCACT
50 A-GT--ATTGATCTC-TAT-T-CATT-TTGTGATTAG-GCACTA---------------------
* * * *
1442491 ATAAACACATTCTCCTCATTAATATTAATGACATTAATAATTTTCTTTTGCATGAAAATCTTTTC
86 -TAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC
* * *
1442556 TTTGCCCTATTTTCTTTAAAGTCAAAGTTCATCTCTTAAATAAGACAAGCATCAATTCTCGTAAC
150 TTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * * * * * * * * *
1442621 AATCTACTTTGCTTTTAGGATTGGGAACCTAAAACCCATTCCCTTCGTTACGATACATGATAATG
215 AATCTCCATT-CTTTCAAGATTGGTATCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
1442686 AT-CTTTTGGTCTCGCAAGAATAGCTTTTCTTTC-CACCGTTTTTGACAGAATCAAAGTTTATTT
279 ATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTTTGATAGAATCAAAGTTTGTCT
* * * * *
1442749 GTTAAATAAGACAAACATGAATATTTATACTACTCCCCATTCTTTTCAGGATTAGGCACCATGAA
342 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * * *
1442814 CGTAGTCTTTTCATTAA-GAGACACTG-TATTGATGCTTTGGTTTCGCTAGAAAAGCTTT-TTCC
407 CTTAGTCTTCTCA-TAAGGATACAC-GATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTT-C
1442876 CCACCAA
469 CCACCAA
* * ** * * **
1442883 TTTTTGTAAAGTCTTAGTTCATGTCTCAAATGAGCCAAACAG-GGATTCTAGCATTGATCTCCCT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAA-TGTGGATTCTAGTATTGATCTCTAT
*
1442947 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGACTTT-
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * * *
1443011 TTTTGCATGAAAATCTTTTCTTTGCCCGATTTTCTTCAAAATCAACGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* **
1443075 ACAAGCACCGATTCTCAAAACAATCTCCATTCTTTTCAAGATTGGTATCC-AAAA-ACATTCCCT
194 ACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCT
* * * *
1443138 TCATTATGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGTCGTTTCT
258 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTTT
* * * *
1443202 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAACCAAGAATAGTCATACTAATCCCTATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * **
1443267 TCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGATATAGATGCCTTGGTTTTG
387 TCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
* *
1443332 CATGAAAGGCTTTCATCCCACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* * * *
1443356 TTTTTGCAAAGTCTAAGTTCGCACCCCAAATGAGCCAAAAGTGGATTCTAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * *
1443421 CATTTTGTGATTAAGCACTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGACTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA-TTTTC
* * * *
1443486 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTCAAAATCAAAGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
*
1443550 ACAAGCTATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATTGGTATCCAAAAACACATTCCC
194 ACAAGC-ATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCC
* * *
1443615 TTCATTAGGATACATGACATTGATGCTTTTGTGTCGTAAGAAAAGCTTTTCTTTC-CGCCGTTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTT
* * * * * *
1443679 TGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACAAGAATAGTTATACTAATCCCTATTCCT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * * ** ** * * ** * * * **
1443744 TTC---TTTTGTC-TC-TCAAA--TAG--GACAAACAAGAATAGTC-ATACTAATCCCTATTCCT
386 TTCAGGATTAGGCACCAT-AAACTTAGTCTTCTCATAAGGATACACGATATTGAT-GCT-TTGGT
** * * *
1443799 TT--CGGGATTAGGC-ATCAT---A--AA
448 TTCACAAGA-AAGGCTTTCTTCCCACCAA
* * **** * * * * *
1443820 -CTTAGTCTTCTCGTAAG---GATACAC-GATATAGATGCC---T-TGGTTTCACAAGAAAGGCT
1 TTTTTGTAAAGTC-TAAGTTCG-TAC-CTCAAAT-GA-GCCAAATGTGGATT--CTAG-TA---T
** * * * ** * ***
1443876 TTTTC-CCA-CCAATTTT-TG--TA---A-AATCTA-A-GTTCGTACCTCA--AATGAGCCA--A
55 TGATCTCTATTC-ATTTTGTGATTAGGCACTATAAACACATTC-T-CCTCATTAA-GATTAATGA
** * ***** * * ** *** * *
1443926 -A-TG-TGGATTCTAGTATTG-ATCTCTTTTCATTT-TGTG-ATTATGCACTAT-AAA-CACA-T
116 TATTGAT-GATT-TTCTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGT
*** * * *
1443982 TC-TCCTCATTAAGATTAATGACATTAAT-AATTTTCTTTTGCATGAA-AATCT--TTTCTTTGC
178 TCATCC-C-TTAA-A-TAA-GACAAGCATCGA--TTC---T-CGT-AACAATCTCCATTCTTT-C
*** * * ** * * * * *
1444042 CCTATT-TTCTTTAAAATCAAAGTTCATCTCTTAAATAAGAGAAGCATCAAATCTCGTAACAATC
230 AAGATTGGTATCCAAAAACACA-TTC--C-CTT-CAT--TAG--G-AT-ACA--T-G--AC-AT-
* * * * * * * * *** *
1444106 T-ACTTTGCTTTTAGGAT-TGGGAACCTAAAACCCATTCCCTTCGTTACGATACATGAT--AATG
277 TGA---TGC-TTT-GG-TGTCGCAA--GAAAA-GCTTTTCTTTC-TCACG-TTTTTGATAGAATC
*** ** * *** * ** ** ** * ** *
1444167 ATCTTTTGGTCTCGCAGGGAT-AG-CTTTTCTTTCCACCGTTTTTGACAGAAT-CAAAGTTTATT
331 AAAGTTT-GTCTCTTA--AATAAGAC-AAAC-ATGAATAG-TCAT-AC-TAATCCCCA--TTCTT
* * * * * * * *
1444229 TGTTA-AATAAGACAAACATGAATATTTA-TACTACTCCCCATTCTTTTCAGGATTAGGCACCAT
386 T-TCAGGATTAGGC-ACCAT-AA-ACTTAGT-CT--T---C--TC--ATAAGGA-TA--CA-C--
* * *
1444292 GAACGTAGTCTTTTCATTAAGAGACACTGTATTGATGCTTTGGTTTCACTAGAAAAGCTTT-TTC
431 G-A--TA---TTG---------------------ATGCTTTGGTTTCACAAGAAAGGCTTTCTT-
1444356 CCCACCAA
468 CCCACCAA
* ** * * **
1444364 TTTTTGTAAAGTCTTAGTTCGTGTCTCAAATGAGCCAAACAG-GGATTCTAGCATTGATCTCCCT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAA-TGTGGATTCTAGTATTGATCTCTAT
*
1444428 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGACTTT-
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * * *
1444492 TTTTGCATGAAAATCTTTTCTTTGCCCGATTTTCTTCAAAATCAACGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* **
1444556 ACAA-CACCGATTCTCAAAACAATCTCCATTCTTTTCAAGATTGGTATCC-AAAA-ACATTCCCT
194 ACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCT
* * * *
1444618 TCATTATGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGTCGTTTCT
258 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTTT
* * * *
1444682 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAACCAAGAATAGTCATACTAATCCCTATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * **
1444747 TCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGATATAGATGCCTTGGTTTTG
387 TCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
* * *
1444812 CATGAAAGGTTTTCATCCCACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* * * *
1444836 TTTTTGCAAAGTCTAAGTTCGCACCCCAAATGAGCCAAAAGTGGATTCTAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * * *
1444901 CATTTTGTGATTAAGCCCTATAAACACATTCTCCTCAATAAGATTAATGATATTGATGACTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA-TTTTC
* * * *
1444966 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTCAAAATCAAAGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* *
1445030 ACAAGTTATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATTGGTATCCAAAAACACATTCCC
194 ACAAG-CATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCC
* * *
1445095 TTCATTAGGATACATGATATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGCCGTTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTT
* * * *
1445159 TGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CC----CCA
*** * * * * **** *
1445224 TTCTTTTGTCTCTTAAATAGG-ACAAATAAGA-ATAGTCATTCTAATCCCTATTC-C--T-TTCG
381 TTC--TT-T-TCAGGATTAGGCAC-CATAA-ACTTAGTC-TTCTCATAAGGATACACGATATT-G
* * * ** * * * * *
1445283 -GGATTAGGCATCATAA-ACTTAGTCTTCTCGTAAGGAT-ACACGATA
438 ATGCTTTGGTTTCACAAGA--AAGGCTT-TC-T-----TCCCACCA-A
* * ** * * * ** ** * *
1445328 TAGATGCCTTGGTTTCACAAG--AAAGGCTTTTTCCCACCAATTTTTGTAAAATAT-AAGTTCGT
1 T---T---TT--TGT-A-AAGTCTAA-G-TTCGTACC-TCAA-ATGAGCCAAATGTGGA-TTC-T
* * * * * * * *
1445390 ACCTCAAATGAGC-CAAATGTGGATTCTAGT-ATT-GATCTCTATTCATTTTGTGATTATGCACT
50 A-GT--ATTGATCTC-TAT-T-CATT-TTGTGATTAG-GCACTA---------------------
* * *
1445452 ATAAACACATTCTCCTCATTAAGATTAATGACATTAATAATTTTCTTTTGCATGAAAATCTTTTC
86 -TAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC
* *
1445517 TTTGCCCTATTTTCTTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCAATTCTCGTAAC
150 TTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * * * * * * * * *
1445582 AATCTACTTTGCTTTTAGGATTGGGAACCTAAAACCCATTCCCTTCGTTACGATACATGATAATG
215 AATCTCCATT-CTTTCAAGATTGGTATCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * * *
1445647 AT-CTTTTGGTCTCGCAGGAATAGCTTTTCTTTC-CACCGTTTTTGACAGAATCAAAGTTTATTT
279 ATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTTTGATAGAATCAAAGTTTGTCT
* * * * *
1445710 GTTAAATAAGACAAACATGAATATTTATACTACTCCCCATTCTTTTCAGGATTAGGCACCATGAA
342 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * *
1445775 CGTAGTCTTTTCATTAA-GAGACACTG-TATTGATGCTTTGGTTTCACTAGAAAAGCTTT-TTCC
407 CTTAGTCTTCTCA-TAAGGATACAC-GATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTT-C
1445837 CCACCAA
469 CCACCAA
* ** * * **
1445844 TTTTTGTAAAGTCTTAGTTCGTGTCTCAAATGAGCCAAACAG-GGATTCTAGCATTGATCTCCCT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAA-TGTGGATTCTAGTATTGATCTCTAT
*
1445908 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGACTTT-
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * * *
1445972 TTTTGCATGAAAATCTTTTCTTTGCCCGATTTTCTTCAAAATCAATGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
* ** *
1446036 ACAAGCACCGATTCTCAAAACAATCTCCATTCTTTTCAAGATTGGTATCC-AAAA-GCATTCCCT
194 ACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCT
* * * *
1446099 TCATTATGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTC-CGTCGTTTCT
258 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-ACGTTTTT
* * * *
1446163 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAACCAAGAATAGTCATACTAATCCCTATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * **
1446228 TCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGATATAGATGCCTTGGTTTTG
387 TCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
* * *
1446293 CATGAAAGGCTTTCATCTCACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* * * *
1446317 TTTTTGCAAAGTCTAAGTTCGCACCCCAAATGAGCCAAAAGTGGATTCTAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* * * * *
1446382 CATTTTGTGATTAAGCCCGATAAACACATTCTCCTCAATAAGATTAATGATATTGATGACTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA-TTTTC
* * * *
1446447 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTCAAAATCAAAGTTAATCTCTTAAAATCA-
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAG
*
1446511 ACAAGCTATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATTGGTATCCAAAAACACATTCCC
194 ACAAGC-ATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCC
*
1446576 TTCATTAGGATACATGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCTGC-CGTTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCT-CACGTTTT
* * * * *
1446640 TGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * * * ** ** * * ** * * * **
1446705 TTC---TTTTGTC-TCTTAAA--TAG--GACAAACAAGAATAGTC-ATACTAATCCCTATTCCTT
386 TTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGAT-GCT-TTGGTT
** * * * ** * *
1446761 T--CGGGATTAGGC-ATCAT-AAACTTAGTC
449 TCACAAGA-AAGGCTTTCTTCCCAC-CA--A
* * * ** * * * *** ** * * *
1446788 TTCTCGTATGGATACACGATATAGATGCCTTGGTTTCACAAGA-AAGGCTTCT-TCCCA-CCAAT
1 TT-T--T-T-G-TA-AAG-TCTA-A-G--TTCGTACCTCAA-ATGAGCCAAATGT-GGATTCTAG
* ** ** *** * * **
1446850 TTTTGTAAAATCTAAGTTCGCA-CCTCAAATGAGCCAAAC-ATGGATTCTAGCATTGATCTCCCT
52 TATTG--ATCTCT-A-TT--CATTTTGTGATTAGGC--ACTAT--AAAC-A-CA-T--TCT-CC-
** * ** ** ** *
1446913 TCATTTTGTGATT-AGGCACTATAAACACATTCTCCTCATTAAGACTAATGATATTGATGACTTT
100 TCA--TTAAGATTAATG-A-TATTGA-TGATT-T--TC-TTTTG-C--ATGA-A--AAT--CTTT
* * *** * * *
1446977 TTTTTG-CATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCGTCTCTTAAAATC
148 TCTTTGCCCT-ATTTTC-------------------TTTAAAATCAAAGTTCATCCCTT-AAATA
* *
1447041 A-ACAAGCATCGATTCTTGAAACAATCTCCATTCTTTTCAAGATTGGTATCCAAAAACACATTCC
192 AGACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCC
* * * * *
1447105 CTTCATTAGGATGCATGGCATTGATGCTTTTGTGTCGCAATAAAAGCTTTTCTTTC-CATCATTT
256 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTT
* * * * * *
1447169 TTCATAAAATCAAAGTTTATCTCTTAAATAGGACAAACAAGAATAATCATACTAATCCCCATTCT
320 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * * *
1447234 TTTC-GAGATTAGGCATCATAAACCTAGTCTTCT-AGTAAGGATACACGATATAGTTGCCTTGGT
385 TTTCAG-GATTAGGCACCATAAACTTAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGT
* *
1447297 TTCGCATGAAAGGCTTTCTTCCCACCAA
448 TTCACAAGAAAGGCTTTCTTCCCACCAA
** * * *
1447325 TTCCTGTAAAGTCTAACTTCGCACC-CAAATGAGCCAAATGTGGATTATAGTATTGATCTCTATT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
* *
1447389 CATTTTGTTATTAAGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
* * * *
1447454 TTTACATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCTCTTAAAATCA-A
131 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT-AAATAAGA
* * * * * *
1447518 CAAGCATCAATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGATCCGAAAACACATTCCCTT
195 CAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCTT
* * * * * * * * * * *
1447583 TATTATGATACATGAAATTAATGCTTTTGCGTTGCAAGAAAAGTTTTTTTTTC-CACCATTTTTT
259 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCA-CGTTTTTG
* * * * *
1447647 ATTGAATCAAAGTTT-T-TCTT---T----CCAACATAAAGAGTCATGCTAATCCCCATTCTTTT
323 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * * * * **
1447703 -TGAGATTAGGCACCATAAACGTAGTCCTCTCATAAAGATACATGAAATAGATGCTTTAGTTTTG
388 CAG-GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCA
* *
1447767 CAAGAAAAGCTTTCTTCCAACCAA
452 CAAGAAAGGCTTTCTTCCCACCAA
* * * **
1447791 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGCCAAACATGGATTCTAGTATTGATCTCCT-T
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCT-CTAT
*
1447855 TCATTTTGTGATTAGGCACTAT-AA-AC--TCTCCTCATTATGATTAATGATATTGATGATTTTC
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTC
* * * * * * *
1447916 TTTTGCATGGAAATCTTGTCTTTACCTTATTTTCCTTAAAATCAAAGTTCTTCCATTAAATAAGA
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * * * * * * * * *
1447981 CTAGCATTGATTCTTGCAACAATCTACTTTGCTTTTAGGATTGGGAACCTAGAACACATT-CCTT
195 CAAGCATCGATTCTCGTAACAATCTCCATT-CTTTCAAGATTGGTATCCAAAAACACATTCCCTT
* * * * *
1448045 CGTTAGGATACATGATAGTGATGCTTTGGTGTCGCAAGAATAA-CTTTTCTTTC-CACCATTTTC
259 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA-AAGCTTTTCTTTCTCA-CGTTTTT
* * * * * * *
1448108 GATAGAATTAAAGTTTGACTGTTAAAAAAAACAAACATTAATACTCATACTAATCCCCATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * *
1448173 TCAAGATTA-GCTACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
387 TCAGGATTAGGC-ACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
*
1448237 GCAAGAAAAGG-TTT-TTCCCCACCAA
451 ACAAG-AAAGGCTTTCTT-CCCACCAA
* * * * *** * **
1448262 TTTTTGTAATGTCTAAGTTCATGCCTCAAATAAGCCAAGCATGGATTCTAGAATTGATCTCCCTT
1 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
*
1448327 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA-TTTTC
* * * *
1448392 TTTTGCGTGAAAATCCTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCTTTAAA-ATAG
130 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA-AG
* * * *
1448456 ACAAGCATCGGTTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAAACACATTTCCT
194 ACAAGCATCGATTCTCGTAACAATCTCCATTC-TTTCAAGATTGGTATCCAAAAACACATTCCCT
*
1448521 TCATTAGGATACGTGACATTGAT
258 TCATTAGGATACATGACATTGAT
1448544 AGAATCAAAG
Statistics
Matches: 11475, Mismatches: 2017, Indels: 1592
0.76 0.13 0.11
Matches are distributed among these distances:
447 2 0.00
448 5 0.00
449 6 0.00
450 6 0.00
451 7 0.00
452 14 0.00
453 26 0.00
454 11 0.00
455 2 0.00
456 12 0.00
457 10 0.00
458 10 0.00
459 1 0.00
460 7 0.00
461 1 0.00
462 87 0.01
463 147 0.01
464 298 0.03
465 959 0.08
466 131 0.01
467 53 0.00
468 4 0.00
469 42 0.00
470 381 0.03
471 234 0.02
472 193 0.02
473 1488 0.13
474 481 0.04
475 2201 0.19
476 1570 0.14
477 230 0.02
478 659 0.06
479 26 0.00
480 9 0.00
481 5 0.00
482 14 0.00
483 25 0.00
484 22 0.00
485 27 0.00
486 12 0.00
487 35 0.00
488 25 0.00
489 6 0.00
490 3 0.00
491 16 0.00
492 15 0.00
493 3 0.00
494 14 0.00
495 8 0.00
496 6 0.00
497 10 0.00
498 31 0.00
499 16 0.00
500 33 0.00
501 14 0.00
502 25 0.00
503 24 0.00
504 55 0.00
505 28 0.00
506 29 0.00
507 19 0.00
508 38 0.00
509 7 0.00
510 32 0.00
511 11 0.00
512 16 0.00
513 4 0.00
514 7 0.00
515 11 0.00
516 15 0.00
517 24 0.00
518 6 0.00
519 13 0.00
520 23 0.00
521 37 0.00
522 16 0.00
523 34 0.00
524 43 0.00
525 27 0.00
526 4 0.00
527 6 0.00
528 5 0.00
529 15 0.00
530 641 0.06
531 231 0.02
532 125 0.01
533 12 0.00
534 10 0.00
535 3 0.00
536 10 0.00
537 13 0.00
538 24 0.00
539 21 0.00
540 3 0.00
542 6 0.00
543 7 0.00
544 13 0.00
545 13 0.00
546 10 0.00
547 3 0.00
548 14 0.00
549 4 0.00
550 18 0.00
551 10 0.00
552 8 0.00
553 11 0.00
554 11 0.00
555 9 0.00
556 6 0.00
557 5 0.00
558 5 0.00
559 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (475 bp):
TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAATGTGGATTCTAGTATTGATCTCTATT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCT
TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGAC
AAGCATCGATTCTCGTAACAATCTCCATTCTTTCAAGATTGGTATCCAAAAACACATTCCCTTCA
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTCACGTTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAG
AAAGGCTTTCTTCCCACCAA
Found at i:1440815 original size:55 final size:55
Alignment explanation
Indices: 1440731--1440839 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
1440721 AAAATCAAAG
*
1440731 TTTGTCTCTTAAATAGGACAAACAAGAATAGTTATACTAATCCCTATTCCTTTCT
1 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
1440786 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1440840 GGGATTAGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (55 bp):
TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
Found at i:1442296 original size:55 final size:55
Alignment explanation
Indices: 1442212--1442320 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
1442202 AAAATCAAAG
* *
1442212 TTTGTCTCTTAAATAGGACAAACAAGAATAGTTATACTAATCCCTATTCCTTTCT
1 TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
1442267 TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1 TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1442321 GGGATTAGGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (55 bp):
TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
Found at i:1443777 original size:55 final size:55
Alignment explanation
Indices: 1443693--1443801 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
1443683 AAAATCAAAG
* *
1443693 TTTGTCTCTTAAATAGGACAAACAAGAATAGTTATACTAATCCCTATTCCTTTCT
1 TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
1443748 TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1 TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1443802 GGGATTAGGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (55 bp):
TTTGTCTCTCAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
Found at i:1445257 original size:55 final size:55
Alignment explanation
Indices: 1445173--1445281 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
1445163 AAAATCAAAG
1445173 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
1 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
* *
1445228 TTTGTCTCTTAAATAGGACAAATAAGAATAGTCATTCTAATCCCTATTCCTTTC
1 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1445282 GGGATTAGGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (55 bp):
TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
Found at i:1446738 original size:55 final size:55
Alignment explanation
Indices: 1446654--1446762 Score: 218
Period size: 55 Copynumber: 2.0 Consensus size: 55
1446644 AAAATCAAAG
1446654 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
1 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
1446709 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1 TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTC
1446763 GGGATTAGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (55 bp):
TTTGTCTCTTAAATAGGACAAACAAGAATAGTCATACTAATCCCTATTCCTTTCT
Found at i:1450252 original size:428 final size:445
Alignment explanation
Indices: 1449507--1451746 Score: 1566
Period size: 476 Copynumber: 4.9 Consensus size: 445
1449497 CATTAATGCT
** * * * * * * * *
1449507 TTGGTTTTGCAAGAAAGGATTTCTTCCCACAAAGTTTTGTAAAGTCTAGGTTCGTGCCTCAAAAG
1 TTGGTTTCACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTCAAATG
* * * ** *
1449572 TGCCAAATATGGATTCTAGTTTTGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
1449637 CCTCATTATGATTAACGATATTAACGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCCTATTTT
131 CCTCATTATGATAAATGATATTGATGACTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
* * * *
1449702 CTTTAAAATCAAAGTTCTTCCTTTAAA-ATAGACAAGTATC-AGTTCTAACAACAATCTCCATTC
196 -TTTAAAATCAAAGTTCATCCTTTAAATA-AGACAACTATCGA-TTCTCACAACAATCTCCACTC
* * * * * * *
1449765 TTTTCAAGATTGGGATCCC-AAAACATATTCCCTTCATTAGGATACATGACATAGATGCTTTGGT
258 TTTTCAAGATTGGGA-CCCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGT
* * * *
1449829 GTCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTCT-T-TC-TAGATTAGGC
322 GTCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTATCTCTTACATAAGAC
* * *
1449891 -ATCA-TAA-A-C-A-TAGT-C-TTCTCGT-TAGGGT-AC-CC-A-ATA-TCGGTGC-C
387 AAACATTAATACCAACTAGTCCATTCTCGTCTAGAGTAACACCAACATATTCAGTGCGC
*
1449935 TTGGTTTCACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTTAAATG
1 TTGGTTTCACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTCAAATG
* * *
1450000 AGACAAACCTGGATTCTAGTAATGAGCTTCATTCATTTTTTGATTAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
** * * ** *
1450065 CCTCATTGCGACAAATGATATTGATGACTTACTTTTGCACAAAAATATTTTCTTTGCCTTATTTT
131 CCTCATTATGATAAATGATATTGATGACTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
*
1450130 TGTTAAAATCAAAGTTCATCCTTTAAATAAGACAACTATCGATTCTCACAATAATCTCCACTCTT
196 T-TTAAAATCAAAGTTCATCCTTTAAATAAGACAACTATCGATTCTCACAACAATCTCCACTCTT
*
1450195 TTCAAGATTGGGACCCAAAAACACAGTCCTTTCATTAAGACACGTGACATTGATGCTTTTGTGTC
260 TTCAAGATTGGGACCCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTC
* * *
1450260 GTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTACATAAGACAAA
325 CTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTATCTCTTACATAAGACAAA
* ** *
1450325 CATTAATACTCAAACTATTCCCCATTCTTTTCTAGATTAGACACCATAAACATAGTCTTCTCATT
390 CATTAATAC-C-AACTAGT--CCATTCTCGTCTAGAGTA-ACACC---AACATA----T-TC---
*
1450390 GGGATACCCGATATTGGTGCC
439 -----A---G----T-GCG-C
* * * *
1450411 TTGGTTTCATAAGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAATTCGTAGCTCAAATG
1 TTGGTTTCACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTCAAATG
* * * *
1450476 GGACAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGCGATTACGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
1450541 CCTCGTTATGATAAATGATACTGATGACTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
131 CCTCATTATGATAAATGATATTGATGACTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
* * * *
1450606 TCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCGCAACAATCTCCACTCTT
196 T-TTAAAATCAAAGTTCATCCTTTAAATAAGACAACTATCGATTCTCACAACAATCTCCACTCTT
* *
1450671 TTCAAGATTGGGACCTAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTATGTC
260 TTCAAGATTGGGACCCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTC
* * *
1450736 AC-AAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATTAAAGTTTATCTCTTA-ATAAGACAA
325 -CTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTATCTCTTACATAAGACAA
* * ** * *
1450799 TCATTAATACTCACACTATTCCCCATTCTTTTCAAGATTAAGCACCATA-AGTAGAGTCTTCTCA
389 ACATTAATAC-CA-ACTAGT--CCATTCTCGTCTAGAGTAA-CACCA-ACA-T--A----T-TC-
*
1450863 ATAGGATACCCGATATTGGTGC
439 -------A---G----T-GCGC
* * * * * *
1450885 TTTGGTTTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTCTAACGTCCAAGTTCGTGCCTCGAAT
1 -TTGGTTTCACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTCAAAT
* * * * * *
1450950 GAGATAAACATGGATTCTACTAATGATTTTTATTCATTTTGTGATTAGGTACTATGAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * **
1451015 TCCTCATTAGGATAAATGATA-T--TGA--------TG-ATGAAAATCTTTTCTATATCTTATTT
130 TCCTCATTATGATAAATGATATTGATGACTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTT
* * * * * *
1451068 TCCTTCAAATCAAAGTTCACCCCTTAAATAAGACAAGC-ATCGATTATCGCAACAATCTCCACTC
195 T-TTTAAAATCAAAGTTCATCCTTTAAATAAGACAA-CTATCGATTCTCACAACAATCTCCACTC
* * * * * * *
1451132 TTTTCAAGATTGTGAACCAAAAACACAATCCTTTCATTAGGATACATGACATTGATGCTTTGGTA
258 TTTTCAAGATTGGGACCCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTG
* * ** * * *
1451197 TCATAAGAAAAGCTTTTAATTT-CACTATTTTTGACAGAATCAAAGTTTATCTCTTAAATAAGAC
323 TCCTAAGAAAAGCTTTT-CTTTCCACCGTTTTTGATAGAATCAAAGTCTATCTCTTACATAAGAC
* * * * * ** * * *
1451261 AAGCATGAAGAGCCACGCTAATGCCCATTCTTTTCGAGATTAGGCACCATAAACGTAGTCCTCTC
387 AAACATTAATA-CCA-ACT-A-GTCCATTCTCGTCTAGAGTA-ACACC---AAC--A------T-
*
1451326 ATAAGGATACATGAAATAGATGC
435 AT-----T-CA-G---T-G-CGC
* ** * * * * * * * *
1451349 TTTAGTTTTGCAAGAAAAGC-TTTCTTCCAAGCAATTTTTGTAAAGTCTGAGTTCGTGCCTCATA
1 -TTGGTTTCACAAGAAAGGCTTTTTTTCC-ACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTCAAA
* * * * * * *
1451413 TAAGCCAAACATGAATTCTAGTATTGATCTCCATTCATTTTGTGATTTGGCACTATAAACATATT
64 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * * *
1451478 CTCCTCGTTATGATTAATGATATTGAAGATTTTCTTTCGCACGGAAATCTTTTCTTTGGCC-TAT
129 CTCCTCATTATGATAAATGATATTGATGACTTTCTTTTGCATGAAAATCTTTTCTTT-GCCTTAT
* * * * * * *
1451542 TTTCTTTAACATCAAAGTCCATCTCTTAAAAT-CGACGAGC-GTCGATTCTCATAACAATCTCCA
193 TTT-TTTAAAATCAAAGTTCATC-CTTTAAATAAGAC-AACTATCGATTCTCACAACAATCTCCA
* * * * * * *
1451605 TTCTTTTCAAGATTAGGATCCAAAAACACATTCCCTTCATTAGGATACGTGACATTGCTGCTTTT
255 CTCTTTTCAAGATTGGGACCCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTT
* * * *
1451670 GTGCTGC-AAG-AAAGCTTTTCTTT-CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
320 GTG-TCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTATCTCTTACATAA
1451732 GACAAAC-TTGAATAC
384 GACAAACATT-AATAC
1451747 TTATACTATT
Statistics
Matches: 1483, Mismatches: 225, Indels: 163
0.79 0.12 0.09
Matches are distributed among these distances:
427 4 0.00
428 309 0.21
429 3 0.00
430 2 0.00
431 7 0.00
432 3 0.00
433 3 0.00
434 1 0.00
436 1 0.00
438 1 0.00
439 3 0.00
442 1 0.00
443 5 0.00
444 4 0.00
446 2 0.00
447 2 0.00
451 1 0.00
452 3 0.00
458 2 0.00
463 191 0.13
464 167 0.11
465 3 0.00
466 2 0.00
467 3 0.00
469 3 0.00
472 5 0.00
473 7 0.00
474 54 0.04
475 218 0.15
476 464 0.31
477 9 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (445 bp):
TTGGTTTCACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTATGATAAATGATATTGATGACTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
TTTAAAATCAAAGTTCATCCTTTAAATAAGACAACTATCGATTCTCACAACAATCTCCACTCTTT
TCAAGATTGGGACCCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTCC
TAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTATCTCTTACATAAGACAAAC
ATTAATACCAACTAGTCCATTCTCGTCTAGAGTAACACCAACATATTCAGTGCGC
Found at i:1450299 original size:159 final size:160
Alignment explanation
Indices: 1450125--1450798 Score: 409
Period size: 159 Copynumber: 4.2 Consensus size: 160
1450115 TCTTTGCCTT
*
1450125 ATTTTTGTTAAAATCAAAGTTCATCCTTTAAATAAGACAACTATCGATTCTCACAATAATCTCCA
1 ATTTTTGATAAAATCAAAGTTCAT-CTTTAAATAAGACAACTATCGATTCTCACAATAATCTCCA
*
1450190 CTCTTTTCAAGATTGGGAC-CCAAAAACACAGTCCTTTCATTAAGACACGTGACATTGATGCTTT
65 CTCTTTTCAAGATTGGGACACCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTT
**
1450254 TGTGTCGTAAGAAAAGCTTTTCTTTCCACC-
130 TGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * * ** * * *
1450284 ATTTTTGATAGAATCAAAGTTTATCTCTTACATAAGACAAAC-ATTAATACTCA-AACTATTCCC
1 ATTTTTGATAAAATCAAAGTTCATCT-TTAAATAAGAC-AACTATCGATTCTCACAA-TAATCTC
* * * * * ** ** * *
1450347 CATTCTTTTCTAGATT-AGACACCATAAACATAGT-CTTCTCATTGGGATACCCGATATTGGTGC
63 CACTCTTTTCAAGATTGGGACACCAAAAACACAGTCCTT-TCATTAAGATACGTGACATTGATGC
* * * * *
1450410 CTTGGTTTCATAAGAAAGGCTTTT-TTTCCACCA
127 TTTTGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * * * ** * * *
1450443 ATTTTT-CTAAAGTCTAAA-TTCGTAGC-TCAAATGGGACAAACT-TGGATTCT-AGTAATGATC
1 ATTTTTGATAAAATC-AAAGTTC--ATCTTTAAATAAGAC-AACTATCGATTCTCA-CAATAATC
* * ** * * * * * * ** * *
1450503 TTCATTCATTTTGC--GATTACG-CACTATAAACACA-TTCTCCTCGTTATGATAAATGATACTG
61 TCCACTC-TTTT-CAAGATTGGGACACCAAAAACACAGTCCT-TTCATTAAGATACGTGACATTG
* ** * * * **
1450564 ATGACTTTT-TTTTGCATGAAAATCTTTTCTTTGC-CTT
123 ATG-CTTTTGTGTCACAAGAAAAGCTTTTCTTTCCACCA
** * * * * *
1450601 ATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCGCAACAATCTCCA
1 ATTTTTGATAAAATCAAAGTTCAT-CTTTAAATAAGACAACTATCGATTCTCACAATAATCTCCA
*
1450666 CTCTTTTCAAGATTGGGAC-CTAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTT
65 CTCTTTTCAAGATTGGGACACCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTT
* *
1450730 TATGTCACAAGAAAAGCTTTTCTTTCCACCG
130 TGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * *
1450761 A-TTTTGATAGAATTAAAGTTTATCTCTT-AATAAGACAA
1 ATTTTTGATAAAATCAAAGTTCATCT-TTAAATAAGACAA
1450799 TCATTAATAC
Statistics
Matches: 378, Mismatches: 105, Indels: 65
0.69 0.19 0.12
Matches are distributed among these distances:
157 4 0.01
158 129 0.34
159 233 0.62
160 12 0.03
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (160 bp):
ATTTTTGATAAAATCAAAGTTCATCTTTAAATAAGACAACTATCGATTCTCACAATAATCTCCAC
TCTTTTCAAGATTGGGACACCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTT
GTGTCACAAGAAAAGCTTTTCTTTCCACCA
Found at i:1450769 original size:476 final size:474
Alignment explanation
Indices: 1449877--1451768 Score: 2216
Period size: 476 Copynumber: 4.0 Consensus size: 474
1449867 AATCAAAGTC
* * * * * *
1449877 TTTCTAGATTAGGCATCATAAACATAGTCTTCTCGTTAGGGTACCCAATATCGGTGCCTTGGTTT
1 TTTCTAGATTAGACACCATAAACATAGTCTTCTCATTAGGATACCCGATATTGGTGCCTTGGTTT
* * *
1449942 CACAAGAAAGGCTTTTTTTCCACCAAGTTTTCTAAAGTCTAAGTTCGTGGCTTAAATGAGACAAA
66 CACAAGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * *
1450007 CCTGGATTCTAGTAATGAGCTTCATTCATTTTTTGATTAGGCACTATAAACACATTCTCCTCATT
131 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
** * ** * * *
1450072 GCGACAAATGATATTGATGACTTACTTTTGCACAAAAATATTTTCTTTGCCTTATTTTTGTTAAA
196 ATGATAAATGATATTGATGA-TTTTTTTTGCACGAAAATCTTTTCTTTGCCTTATTTTTCTTAAA
* * * *
1450137 ATCAAAGTTCATCCTTTAAATAAGACAACTATCGATTCTCACAATAATCTCCACTCTTTTCAAGA
260 ATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAGA
* **
1450202 TTGGGACCCAAAAACACAGTCCTTTCATTAAGACACGTGACATTGATGCTTTTGTGTCGTAAGAA
325 TTGGGA-CCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTCACAAGAA
*
1450267 AAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTATCTCTTACATAAGACAAACATTAA
389 AAGCTTTTCTTT-CACCGATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATTAA
*
1450331 TACTCAAACTATTCCCCATTCT
453 TACTCACACTATTCCCCATTCT
*
1450353 TTTCTAGATTAGACACCATAAACATAGTCTTCTCATTGGGATACCCGATATTGGTGCCTTGGTTT
1 TTTCTAGATTAGACACCATAAACATAGTCTTCTCATTAGGATACCCGATATTGGTGCCTTGGTTT
* * *
1450418 CATAAGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAATTCGTAG-CTCAAATGGGACAA
66 CACAAGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAGTTCGT-GCCTCAAATGAGACAA
* * * *
1450482 ACTTGGATTCTAGTAATGATCTTCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCGT
130 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* *
1450547 TATGATAAATGATACTGATGACTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTTCTTAA
195 TATGATAAATGATATTGATGA-TTTTTTTTGCACGAAAATCTTTTCTTTGCCTTATTTTTCTTAA
*
1450612 AATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCGCAACAATCTCCACTCTTTTCAAG
259 AATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAG
*
1450677 ATTGGGACCTAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTATGTCACAAGA
324 ATTGGGACC-AAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTCACAAGA
* *
1450742 AAAGCTTTTCTTTCCACCGA-TTTTGATAGAATTAAAGTTTATCTCTT-AATAAGACAATCATTA
388 AAAGCTTTTCTTT-CACCGATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATTA
1450805 ATACTCACACTATTCCCCATTCT
452 ATACTCACACTATTCCCCATTCT
* ** * * *
1450828 TTTCAAGATTA-AGCACCATAAGTAGAGTCTTCTCAATAGGATACCCGATATTGGTGCTTTGGTT
1 TTTCTAGATTAGA-CACCATAAACATAGTCTTCTCATTAGGATACCCGATATTGGTGCCTTGGTT
* * * * *
1450892 TCGCAAGAAAGGCTTTTTTTCCACCAATTTTTCTAACGTCCAAGTTCGTGCCTCGAATGAGATAA
65 TCACAAGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * * * *
1450957 ACATGGATTCTACTAATGATTTTTATTCATTTTGTGATTAGGTACTATGAACACATTCTCCTCAT
130 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* * ** * *
1451022 TAGGATAAATGATATTGATGA-------T----GAAAATCTTTTCTATATCTTATTTTCCTTCAA
195 TATGATAAATGATATTGATGATTTTTTTTGCACGAAAATCTTTTCTTTGCCTTATTTTTCTTAAA
* * *
1451076 ATCAAAGTTCACCCCTTAAATAAGACAAGCATCGATTATCGCAACAATCTCCACTCTTTTCAAGA
260 ATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAGA
* * * * * * *
1451141 TTGTGAACCAAAAACACAATCCTTTCATTAGGATACATGACATTGATGCTTTGGTATCATAAGAA
325 TTG-GGACCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTCACAAGAA
* * * * *
1451206 AAGCTTTTAATTTCA-CTATTTTTGACAGAATCAAAGTTTATCTCTTAAATAAGACAAGCATGAA
389 AAGCTTTT-CTTTCACCGATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATTAA
* * * *
1451270 GAGC-CACGCTAATGCCCATTCT
453 TA-CTCACACTATTCCCCATTCT
* * * * * ** * * * * *
1451292 TTTCGAGATTAGGCACCATAAACGTAGTCCTCTCATAAGGATACATGAAATAGATGCTTTAGTTT
1 TTTCTAGATTAGACACCATAAACATAGTCTTCTCATTAGGATACCCGATATTGGTGCCTTGGTTT
** * * * * * * * *
1451357 TGCAAGAAAAGC-TTTCTTCCAAGCAATTTTTGTAAAGTCTGAGTTCGTGCCTCATATAAGCCAA
66 CACAAGAAAGGCTTTTTTTCC-ACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * * * * *
1451421 ACATGAATTCTAGTATTGATCTCCATTCATTTTGTGATTTGGCACTATAAACATATTCTCCTCGT
130 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* * * *
1451486 TATGATTAATGATATTGAAGATTTTCTTTCGCACGGAAATCTTTTCTTTGGCC-TA-TTTTCTTT
195 TATGATAAATGATATTGATGATTTT-TTTTGCACGAAAATCTTTTCTTT-GCCTTATTTTTC-TT
* * * * * * * * * *
1451549 AACATCAAAGTCCATCTCTTAAA-ATCGACGAGCGTCGATTCTCATAACAATCTCCATTCTTTTC
257 AAAATCAAAGTTCATCCCTTAAATA-AGACAACCATCGATTATCACAACAATCTCCACTCTTTTC
* * * * * *
1451613 AAGATTAGGATCCAAAAACACATTCCCTTCATTAGGATACGTGACATTGCTGCTTTTGTG-CTGC
321 AAGATTGGGA-CCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTC-AC
*
1451677 AAG-AAAGCTTTTCTTTCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-
384 AAGAAAAGCTTTTCTTTCACCGATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
* *
1451739 TTGAATACTTATACTATTCCCCATTCT
449 TT-AATACTCACACTATTCCCCATTCT
1451766 TTT
1 TTT
1451769 TAAGAATGGG
Statistics
Matches: 1210, Mismatches: 174, Indels: 66
0.83 0.12 0.05
Matches are distributed among these distances:
462 2 0.00
463 184 0.15
464 202 0.17
465 1 0.00
467 1 0.00
473 2 0.00
474 64 0.05
475 241 0.20
476 510 0.42
477 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (474 bp):
TTTCTAGATTAGACACCATAAACATAGTCTTCTCATTAGGATACCCGATATTGGTGCCTTGGTTT
CACAAGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
ATGATAAATGATATTGATGATTTTTTTTGCACGAAAATCTTTTCTTTGCCTTATTTTTCTTAAAA
TCAAAGTTCATCCCTTAAATAAGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAGAT
TGGGACCAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTGTGTCACAAGAAAA
GCTTTTCTTTCACCGATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATTAATAC
TCACACTATTCCCCATTCT
Found at i:1451482 original size:939 final size:941
Alignment explanation
Indices: 1449902--1451773 Score: 2329
Period size: 939 Copynumber: 2.0 Consensus size: 941
1449892 TCATAAACAT
** *
1449902 AGTCTTCTCGTTAGGGTACCCAATATCGGTGCCTTGGTTTCACAAGAAAGGCTTTTTTTCCACCA
1 AGTCTTCTCAATAGGATACCCAATATCGGTGCCTTGGTTTCACAAGAAAGGCTTTTTTTCCACCA
* * * * *
1449967 AGTTTTCTAAAGTCTAAGTTCGTGGCTTAAATGAGACAAACCTGGATTCTAGTAATGAGCTTCAT
66 AGTTTTCTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGAGCTTCAT
*
1450032 TCATTTTTTGATTAGGCACTATAAACACATTCTCCTCATTGCGACAAATGATATTGATGACTTAC
131 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTGCGACAAATGATATTGATG---TA-
* * ** * *
1450097 TTTTGCACAAAAATATTTTCTTTGCCTTATTTTTGTTAAAATCAAAGTTCATCCTTTAAATAAGA
192 --TTG---AAAAATATTTTCTATACCTTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGA
* * * *
1450162 CAACTATCGATTCTCACAATAATCTCCACTCTTTTCAAGATTGGGACCCAAAAACACAGTCCTTT
252 CAACTATCGATTATCACAACAATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACAATCCTTT
* * * * *
1450227 CATTAAGACACGTGACATTGATGCTTTTGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTGA
317 CATTAAGACACATGACATTGATGCTTTGGTATCATAAGAAAAGCTTTTATTTCCACCATTTTTGA
* * * * *
1450292 TAGAATCAAAGTTTATCTCTTACATAAGACAAACATTAATACTCAAACTATTCCCCATTCTTTTC
382 CAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGACTCAAACTAATCCCCATTCTTTTC
* * ** * * * * * *
1450357 TAGATTAGACACCATAAACATAGTCTTCTCATTGGGATACCCGATATTGGTGCCTTGGTTTCATA
447 GAGATTAGACACCATAAACATAGTCCTCTCATAAGGATACACGAAATAGATGCCTTAGTTTCACA
* * ** *
1450422 AGAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAATTCGTAGCTCAAATGGGACAAACTTG
512 AGAAAAGCTTTTCTTCCACCAATTTTTCTAAAGTCTAAATTCGTAGCTCAAATAAGACAAACATG
* *
1450487 GATTCTAGTAATGATCTTCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCGTTATGA
577 AATTCTAGTAATGATCTCCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCGTTATGA
* * *
1450552 TAAATGATACTGATGACTTTT-TTTTGCATGAAAATCTTTTCTTT-GCCTTATTTT-TCTTAAAA
642 TAAATGATACTGAAGA-TTTTCTTTCGCACGAAAATCTTTTCTTTGGCC-TATTTTCT-TTAAAA
* *
1450614 TCAAAGTTCATCCCTT-AAATAAGACAACCATCGATTATCGCAACAATCTCCACTCTTTTCAAGA
704 TCAAAGTCCATCCCTTAAAAT-AGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAGA
* *
1450678 TTGGGA-CCTAAAAACACAGTCCTTTCATTAAGATACGTGACATTGATGCTTTTATG-TCACAAG
768 TTAGGATCC-AAAAACACAGTCCCTTCATTAAGATACGTGACATTGATGCTTTTATGCT-ACAAG
* *
1450741 AAAAGCTTTTCTTTCCACCGATTTTGATAGAATTAAAGTTTATCTCTT-AATAAGACAATCATT-
831 -AAAGCTTTTCTTT-CACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC-TTG
1450804 AATACTCACACTATTCCCCATTCTTTTCAAGATTAAGCACCATAAGTAG
893 AATACTCACACTATTCCCCATTCTTTTCAAGATTAAGCACCATAAGTAG
* * * *
1450853 AGTCTTCTCAATAGGATACCCGATATTGGTGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCACCA
1 AGTCTTCTCAATAGGATACCCAATATCGGTGCCTTGGTTTCACAAGAAAGGCTTTTTTTCCACCA
* * * * ** *
1450918 ATTTTTCTAACGTCCAAGTTCGTGCCTCGAATGAGATAAACATGGATTCTACTAATGATTTTTAT
66 AGTTTTCTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGAGCTTCAT
* * *
1450983 TCATTTTGTGATTAGGTACTATGAACACATTCTCCTCATTAG-GATAAATGATATTGATG-A-TG
131 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-GCGACAAATGATATTGATGTATTG
* * *
1451045 -AAAATCTTTTCTATATCTTATTTTCCTTCAAATCAAAGTTCACCCCTTAAATAAGACAAGC-AT
195 AAAAATATTTTCTATACCTTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAA-CTAT
* * *
1451108 CGATTATCGCAACAATCTCCACTCTTTTCAAGATTGTGAACCAAAAACACAATCCTTTCATTAGG
259 CGATTATCACAACAATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACAATCCTTTCATTAAG
* *
1451173 ATACATGACATTGATGCTTTGGTATCATAAGAAAAGCTTTTAATTT-CACTATTTTTGACAGAAT
324 ACACATGACATTGATGCTTTGGTATCATAAGAAAAGCTTTT-ATTTCCACCATTTTTGACAGAAT
* ** *
1451237 CAAAGTTTATCTCTTAAATAAGACAAGCATGAAGAGC-CACGCTAATGCCCATTCTTTTCGAGAT
388 CAAAGTTTATCTCTTAAATAAGACAAACATGAAGA-CTCAAACTAATCCCCATTCTTTTCGAGAT
* * * * **
1451301 TAGGCACCATAAACGTAGTCCTCTCATAAGGATACATGAAATAGATGCTTTAGTTTTGCAAGAAA
452 TAGACACCATAAACATAGTCCTCTCATAAGGATACACGAAATAGATGCCTTAGTTTCACAAGAAA
* * * * * *
1451366 AGC-TTTCTTCCAAGCAATTTTTGTAAAGTCTGAGTTCGT-GCCTCATATAAGCCAAACATGAAT
517 AGCTTTTCTTCC-ACCAATTTTTCTAAAGTCTAAATTCGTAG-CTCAAATAAGACAAACATGAAT
* * ** * *
1451429 TCTAGTATTGATCTCCATTCATTTTGTGATTTGGCACTATAAACATATTCTCCTCGTTATGATTA
580 TCTAGTAATGATCTCCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCGTTATGATAA
* * *
1451494 ATGATATTGAAGATTTTCTTTCGCACGGAAATCTTTTCTTTGGCCTATTTTCTTTAACATCAAAG
645 ATGATACTGAAGATTTTCTTTCGCACGAAAATCTTTTCTTTGGCCTATTTTCTTTAAAATCAAAG
* * * * * * * *
1451559 TCCATCTCTTAAAATCGACGAGCGTCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGAT
710 TCCATCCCTTAAAATAGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAGATTAGGAT
* * * * *
1451624 CCAAAAACACATTCCCTTCATTAGGATACGTGACATTGCTGCTTTTGTGCTGCAAGAAAGCTTTT
775 CCAAAAACACAGTCCCTTCATTAAGATACGTGACATTGATGCTTTTATGCTACAAGAAAGCTTTT
* * * *
1451689 CTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTTATACT
840 CTTTCACCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACTTGAATACTCACACT
*
1451754 ATTCCCCATTCTTTTTAAGA
905 ATTCCCCATTCTTTTCAAGA
1451774 ATGGGTAAGC
Statistics
Matches: 787, Mismatches: 120, Indels: 41
0.83 0.13 0.04
Matches are distributed among these distances:
937 32 0.04
938 65 0.08
939 506 0.64
940 16 0.02
943 2 0.00
947 1 0.00
951 164 0.21
952 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (941 bp):
AGTCTTCTCAATAGGATACCCAATATCGGTGCCTTGGTTTCACAAGAAAGGCTTTTTTTCCACCA
AGTTTTCTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGAGCTTCAT
TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTGCGACAAATGATATTGATGTATTGA
AAAATATTTTCTATACCTTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAACTATCG
ATTATCACAACAATCTCCACTCTTTTCAAGATTGGGAACCAAAAACACAATCCTTTCATTAAGAC
ACATGACATTGATGCTTTGGTATCATAAGAAAAGCTTTTATTTCCACCATTTTTGACAGAATCAA
AGTTTATCTCTTAAATAAGACAAACATGAAGACTCAAACTAATCCCCATTCTTTTCGAGATTAGA
CACCATAAACATAGTCCTCTCATAAGGATACACGAAATAGATGCCTTAGTTTCACAAGAAAAGCT
TTTCTTCCACCAATTTTTCTAAAGTCTAAATTCGTAGCTCAAATAAGACAAACATGAATTCTAGT
AATGATCTCCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCGTTATGATAAATGATA
CTGAAGATTTTCTTTCGCACGAAAATCTTTTCTTTGGCCTATTTTCTTTAAAATCAAAGTCCATC
CCTTAAAATAGACAACCATCGATTATCACAACAATCTCCACTCTTTTCAAGATTAGGATCCAAAA
ACACAGTCCCTTCATTAAGATACGTGACATTGATGCTTTTATGCTACAAGAAAGCTTTTCTTTCA
CCGATTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACTTGAATACTCACACTATTCCC
CATTCTTTTCAAGATTAAGCACCATAAGTAG
Found at i:1452686 original size:79 final size:79
Alignment explanation
Indices: 1452523--1453138 Score: 538
Period size: 79 Copynumber: 7.8 Consensus size: 79
1452513 GTTATTTCCG
* * ** *
1452523 CGGGGATACTCCAACCCCATTATTTTCGAG-GAGAAACTCTAACCTTGATTTTATTTCCAAAACA
1 CGGGGATACTCCAACCTCATTATTTTCGAGAG-GATACTCTAACCCCGATTTTATTTCCAAATCA
* *
1452587 -CTAATTCTTCATAAT
65 CCAAATT-TTCACAAT
* *
1452602 CGGGGATACTCCAACCTCATTATTTTCGAGAGGA-ACTCTAACCCCGGTTTTATTTTTCAAATCA
1 CGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCTAACCCCGATTTTA-TTTCCAAATCA
*
1452666 TCAAATTTTCACAAT
65 CCAAATTTTCACAAT
* * * * * * *
1452681 TGGGGACACTCCAATCTCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
1 CGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCTAACCCCGATTTTATTTCCAAATCAC
1452746 CAAATTTTCACAAT
66 CAAATTTTCACAAT
** * * * * ** * **
1452760 TAGGGATACTCCAA-CTCCGTTATTTCCTAGGGGATACTCTAATTCCGGTTTTATTTCCAAATTG
1 CGGGGATACTCCAACCT-CATTATTTTCGAGAGGATACTCTAACCCCGATTTTATTTCCAAATCA
*
1452824 CCAATTTTTCACAAT
65 CCAAATTTTCACAAT
* * *
1452839 CGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGGTTTTATTTCCAGAA-CA
1 CGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCTAACCCCGATTTTATTTCCA-AATCA
* *
1452903 TCAATTTTTCACAAT
65 CCAAATTTTCACAAT
* * *
1452918 CGGGGATACTCCAACCTCGTTA-TTTCTGAG-GAGATACTCTAACCCTGATTTTATTTCTAAAAT
1 CGGGGATACTCCAACCTCATTATTTTC-GAGAG-GATACTCTAACCCCGATTTTATTTC-CAAAT
*
1452981 -ACCAAATTTTCATAAT
63 CACCAAATTTTCACAAT
* * * **
1452997 CGGGGTTACTCCAACC-CTATTA-TTTCTGA-AGGGATACTCCAACCCCAATTTTATTTTTAGAA
1 CGGGGATACTCCAACCTC-ATTATTTTC-GAGA-GGATACTCTAACCCCGATTTTATTTCCA-AA
* *
1453059 -CACCGATTTTTCACAAT
62 TCACCAAATTTTCACAAT
* ** * * * * *
1453076 CGAGGATACTCCAGTCTCGTTATTTTTGAAAGGATACTCAAACCCC-ATCTTTATCTTCAAAAT
1 CGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCTAACCCCGAT-TTTAT-TTCCAAAT
1453139 ATTAAGTTTT
Statistics
Matches: 444, Mismatches: 71, Indels: 43
0.80 0.13 0.08
Matches are distributed among these distances:
78 26 0.06
79 383 0.86
80 35 0.08
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
CGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCTAACCCCGATTTTATTTCCAAATCAC
CAAATTTTCACAAT
Found at i:1452821 original size:158 final size:155
Alignment explanation
Indices: 1452523--1453100 Score: 622
Period size: 158 Copynumber: 3.7 Consensus size: 155
1452513 GTTATTTCCG
* * * * **
1452523 CGGGGATACTCCAACCCCATTATTTTCGAGGAGAAACTCTAACCTTGATTTTATTTCCAAAACA-
1 CGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * * * *
1452587 CTAATTCTTCATAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGA-ACTCTAACCCCGGTT
66 CAAATT-TTCACAATCGGGGATACTCCAACCTCGTTA-TTTCTAGGGGATACTCTAA-CCCGGTT
* *
1452651 TTATTTTTCAAATCATCAAATTTTCACAAT
128 TTA-TTTCCAAAT-ACCAAATTTTCACAAT
* * * *
1452681 TGGGGACACTCCAATCTCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
1 CGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
** *
1452746 CAAATTTTCACAATTAGGGATACTCCAA-CTCCGTTATTTCCTAGGGGATACTCTAATTCCGGTT
66 CAAATTTTCACAATCGGGGATACTCCAACCT-CGTTATTT-CTAGGGGATACTCTAA-CCCGGTT
* *
1452810 TTATTTCCAAATTGCCAATTTTTCACAAT
128 TTATTTCCAAA-TACCAAATTTTCACAAT
* * * * *
1452839 CGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGGTTTTATTTCCAGAACAT
1 CGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * *
1452904 CAATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTGAGGAGATACTCTAACCCTGATTT
66 CAAATTTTCACAATCGGGGATACTCCAACCTCGTTATTTCT-AGGGGATACTCTAACCC-GGTTT
* *
1452969 TATTTCTAAAATACCAAATTTTCATAAT
129 TATTTC-CAAATACCAAATTTTCACAAT
* * * * * ** *
1452997 CGGGGTTACTCCAACCCTATTATTTCTGAAGGGATACTCCAACCCCAATTTTATTTTTAGAACAC
1 CGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * * **
1453062 CGATTTTTCACAATCGAGGATACTCCAGTCTCGTTATTT
66 CAAATTTTCACAATCGGGGATACTCCAACCTCGTTATTT
1453101 TTGAAAGGAT
Statistics
Matches: 354, Mismatches: 57, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
157 9 0.03
158 318 0.90
159 27 0.08
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (155 bp):
CGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
CAAATTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTAGGGGATACTCTAACCCGGTTTTA
TTTCCAAATACCAAATTTTCACAAT
Found at i:1453101 original size:237 final size:238
Alignment explanation
Indices: 1452525--1453121 Score: 659
Period size: 237 Copynumber: 2.5 Consensus size: 238
1452515 TATTTCCGCG
* * * * * *** * *
1452525 GGGATACTCCAACCCCATTATTTTC-GAGGAGAAACTCTAACCTTGATTTTATTTCCAAAACACT
1 GGGATACTCCAACTCCATTATTTCCTAAGG-GATACTCCAACCCCAATTTTATTTCCAAATCACC
* * *
1452589 AATTCTTCATAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGA-ACTCTAACCCCGGTTTT
65 AATTTTTCACAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCAAACCCCGGTTTT
* * * *
1452653 ATTTTTCAAATCATCAAATTTTCACAATTGGGGACACTCCAATCTCATTATTTCCGAGGGGATAC
130 ATTTTCCAAATCATCAAATTTTCACAATCGGGGACACTCCAACCTCATTATTTCCGAGGAGATAC
*
1452718 TCCAACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATTA
195 TCCAACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATCA
* * * ** ** **
1452762 GGGATACTCCAACTCCGTTATTTCCTAGGGGATACTCTAATTCCGGTTTTATTTCCAAATTGCCA
1 GGGATACTCCAACTCCATTATTTCCTAAGGGATACTCCAACCCCAATTTTATTTCCAAATCACCA
* *
1452827 ATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGGTTTTA
66 ATTTTTCACAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCAAACCCCGGTTTTA
* * * *
1452892 -TTTCCAGAA-CATCAATTTTTCACAATCGGGGATACTCCAACCTCGTTATTTCTGAGGAGATAC
131 TTTTCCA-AATCATCAAATTTTCACAATCGGGGACACTCCAACCTCATTATTTCCGAGGAGATAC
* * * * * *
1452955 TCTAACCCTGATTTTATTTCTAAAATACCAAATTTTCATAATCG
195 TCCAACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATCA
* **
1452999 GGGTTACTCCAAC-CCTATTATTT-CTGAAGGGATACTCCAACCCCAATTTTATTTTTAGAA-CA
1 GGGATACTCCAACTCC-ATTATTTCCT-AAGGGATACTCCAACCCCAATTTTATTTCCA-AATCA
* * ** * * *
1453061 CCGATTTTTCACAATCGAGGATACTCCAGTCTCGTTATTTTTGAAAGGATACTCAAACCCC
63 CCAATTTTTCACAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCAAACCCC
1453122 ATCTTTATCT
Statistics
Matches: 299, Mismatches: 55, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
236 4 0.01
237 272 0.91
238 23 0.08
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (238 bp):
GGGATACTCCAACTCCATTATTTCCTAAGGGATACTCCAACCCCAATTTTATTTCCAAATCACCA
ATTTTTCACAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCAAACCCCGGTTTTA
TTTTCCAAATCATCAAATTTTCACAATCGGGGACACTCCAACCTCATTATTTCCGAGGAGATACT
CCAACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATCA
Found at i:1455112 original size:475 final size:474
Alignment explanation
Indices: 1454060--1467604 Score: 14039
Period size: 475 Copynumber: 28.6 Consensus size: 474
1454050 CGTTGCGACA
* * * *
1454060 ATATTGATGATTTTTTTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCATTCAAATCAAAGTT
1 ATATTGATGA--TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTT
* * * * *
1454125 CATCCCTTAAATAAGACAAGCATCCATTCTCATAACAATCTCCATTATTTTCATGATTGGGAACC
64 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-ACC
* *
1454190 TAAAACACATTCCCTTCATTA-GATACATGACATTGATGCTTTGGTGTAGCAAGAGAAA-CTTTT
128 CAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA-AAAGCTTTT
* ** ** **
1454253 CTTTCCACCATGTTTGATAGACCCAAAGTTTGTCTCTTAAATAAGACAAACATCCATACTTGTAC
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * *
1454318 TAATCCCTATTCTTTTCAAGATTTGGCACCGTAAATC-TAGTCTTCTTATTAGGATACACGATAT
257 TAATCCCCATTCTTTTCAAGATTAGGCACCATAAA-CATAGTCTTCTCATAAGGATACACGATAT
* * * **
1454382 TGATGCTTTAGTTTCGCAAGAAAGGC-TTTTCCCCACCAATTTTTGTAAACTCTAAGTTTATGCC
321 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * * * *
1454446 TTAAATAAGCCAAACATGGATTCTAGAATTGATCTTCATTTATTTTATGATTGGGCACTATAAAC
386 TCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAAC
1454511 ACATTCTCCTCATTAAGATTAATG
451 ACATTCTCCTCATTAAGATTAATG
* * * *
1454535 ATATTGATGATTTTTTTTCCATGAAAATCTTTTCTTGGCCTTATTTTCTTTAAAATCAACGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* * * * * *
1454600 ACTCTTAAATAAGATAAGTATCAATTCTCGTAACAATCTCCATTTTTTTCAAGATTAGGACCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAA
* * * * *
1454665 AACCAAATTCCCTTTATTAAGATATATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
131 AA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
1454730 TCCACCACTTTTGATAGAAACAAAGTTTGTCTCCTAAATAAGACAAACATTAATACTTATACTAT
195 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
** * * * * *
1454795 TCCTTATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACCCGATAGTGGT
260 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * * * * * * * *
1454860 ACTTTGGTTTTGCAATAAGGGCTTTTTTTCCACCAATTATTATAAAGTGTAAGTTTGTGCCTCAA
325 GCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
** * * ** * * ***
1454925 ACAAGACAAACATGGATTCTAGAAACGATTTTCATTCATTTTTTGATTAAGCACTACGTACACAT
390 ATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * *
1454990 TCTCCTTATTAGGATAAATG
455 TCTCCTCATTAAGATTAATG
* * * * * *
1455010 ATATTGATGATTTTTTTTGCATGAAAATATTTTTTTTACCCTATTTTCCTTCAAATCAAACTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* * * * * *
1455075 TCCCTTAAATAAGACAAGTATCGATTCTCGCAACAATCTCCACTCTTCTCAAGATTGGGATCCGA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGA-CCCA
* * * * ** * *
1455140 AAACATATTCACATCATTAGGATACATGACACTGATGCTTTGGCATCGTAAGAAAAGCTTTTATT
130 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
1455205 TCCACCATTTTGGATAAAATCAATGTTTGTCTCTTAAATATGACAAACATGAATAGTCATGCTAA
195 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
* ** * * *
1455270 TCCCCACTCTTTTTGAGATTAGGCACCATAAACGTGGTCTTCTCATAAGGATATACGATATTGAT
260 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * * *
1455335 GTTTTGGTTTTTGCAGGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCGTGCCTCA
325 GCTTTGG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* *
1455400 AATGAGCCAAATC-TGGATTCTAGTATTGA-TTTCTATTCATTTTGTGGTTAGGCACTATAAATA
389 AATGAGCCAAA-CATGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATAAACA
* * *
1455463 CAATCTCCTCATTAGGATAAATG
452 CATTCTCCTCATTAAGATTAATG
* *
1455486 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAATTTCTTTAAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * ** * * *
1455551 ATCCCCTAAATAAGACAAGTATTAATTCATAC--AACAATCTCCACTCTTTTCAAGATTTGGATC
65 ATCCCTTAAATAAGACAAGCATCGATTC-T-CGTAACAATCTCCATTCTTTTCAAGATTAGGACC
* *
1455614 CAAAA-AGGCATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCGTAAGAAAAGCTTT
128 CAAAACA--CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * * *
1455678 TCTTTCCACTATCTTTAATAAAATCAAAGGTTGTCTCTTAAATAAGACAAACTTGAATAC-CTAT
191 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC-AT
* * *
1455742 ACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATA
255 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * *
1455807 TTAATGCTTTAGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTCTATAAAGTCTAAGTTCGTGC
320 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * ** * * *
1455872 CTCAAATCAGCCAAACATGGATTCCTA-TACTGACATTCATTCATTTTGTGATTAGACATTGTAA
385 CTCAAATGAGCCAAACATGGATT-CTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAA
*
1455936 ACACATTCTCTTCATTAAGATTAATG
449 ACACATTCTCCTCATTAAGATTAATG
* *
1455962 ATATTCATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGT
1 ATATTGATGA---TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGT
* * * * * *
1456027 TCATCCCTAAAATAAGAAAAGCATCGATTCTCATAACAATCTCTATTCCTTTCAAGATTGGGACC
63 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACC
* * *
1456092 CAAAA-ACACTGT-CCTATCATTAGGATACATAACATTGATGGTTTGGTGTCGAAAGAAAAGCTT
128 CAAAACACA-T-TCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * *
1456155 TTCTTTCCACTATTTTTGATAGAGTTAAAGTTTCTCTCTTAAATAAGACAAACATTAGTACTCGT
190 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* ** * * *
1456220 GCTTTTCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTATTCTCATTAGCG-TAC-CTAT
255 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG-GATACACGA-
* ** * * *
1456283 TATTGGTGCTTTGGTTTCATAAGAAAGGCTTTTTT-TCACCAAATTTTGTAAAGTCTAAGCTCGT
318 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
** ** * ** * *
1456347 GTGTCAAATGAAACAAACATGGATTCCAGTAAAGATTTTCATTTATTTTATGATTAGGCACTATA
383 GCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATA
** * * *
1456412 AACACATTCTAATCATTAGGATAAAAG
448 AACACATTCTCCTCATTAAGATTAATG
* * * * * *
1456439 ACATTGAAGATTTTCTTTTGCAAGGAAATCTTTTCTTTGCCCTTTTTTCTTTCAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* *
1456504 ATCCCTTAAAAAAGACAAGCATCGATTC-CAGCAACAATCTCCATTCTTTTCAAGATTAGGACCC
65 ATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAATCTCCATTCTTTTCAAGATTAGGACCC
* * * *
1456568 AAAAACACATTCCCATCATTAGCATACATGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTA
129 -AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * * * * * * *
1456633 ATTCCACCGTTTTTCACAGAGTCAAAGTTTCTCTCCTAAATAAGACAAACAAGAATAGTCATGCT
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * *
1456698 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGACTTTTCATAAGGATACACGAAATTG
258 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * ** * * * *
1456763 ATTCTTTGGTTTTGCAAGGAAA-GCTTTCGTCCCACCGATTTTTATAATGTCGAAGTTCGTGCCT
323 ATGCTTTGGTTTCGCAA-GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* *** *
1456827 CAAATGAGCTAAACATGGATTCTAGTATTGATCACCATGCATTTTGTGATTAGGCACTATAAACA
387 CAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
1456892 CATTCTCTTCATTAGGA-TAATTG
452 CATTCTCCTCATTAAGATTAA-TG
* * *
1456915 ATATTGATGATTTTTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATCAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* ** * * * *
1456980 TCCCTTAAATAAGACAAGCATCGATTTTCGTAACAGCCTCCATTATTTTCAAGATTGGGAATCTA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-ACCCA
* * * *
1457045 AAACACATTCCCTTCGTTAGGATACATGACAGTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTT
130 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * *
1457110 TCCACCGTTTTTGATAGAATCAACGTTTATCTCTGAAAT------AACATGAATACTCATACTAA
195 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
* * * * *
1457169 TCCCCATTCTTTTCAGGAATAGGCACCGTAAACATAGTCTTCTCATAAGGATATACGATACTGAT
260 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* *
1457234 GCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
325 GCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* ** * **
1457299 ATGACCCAAATGTGGATTCTAGTATCGA-TCCCTATTCATTTTGTGATTAGGCACTATAAACACA
390 ATGAGCCAAACATGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATAAACACA
*
1457363 TTCTCCTCATTAAGATTAAAG
454 TTCTCCTCATTAAGATTAATG
* * * * * * * * *
1457384 ATATTGATGATTTTCTTTTACGTGGACATCTTTTCTTTACCTTATTTTCATTACAATCAAAATT-
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * * **
1457448 TTCTCTTAGATAAGGCAAGCATCGATTCTCGTAACAATCTCCATTCCTTTT-AAGATTAGGATTC
65 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTCAAGATTAGGACCC
* *
1457512 AAAATCACATTCCTTTCATTAGGATACATGCCATTGATGCTTT-GTGGTCATGC--GAAAAGCTT
129 AAAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT-GTC--GCAAGAAAAGCTT
* * * *
1457574 TTCATTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGGCAAACATGAATGCTCAT
190 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* * * * *
1457639 ACTATTCCCTATTCTTTTCAAGATTAAGCACCATAAACATAGTCTTCTCAT-TGTGATACCCGAT
255 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG-GATACACGAT
** ** * * * *
1457703 ATTGGCGCTTTGGTTTCAAAAGAAA-GTTTTTCTTCCAACAAATTTTTGTAAAGTCTAAGTCCGT
319 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * * * * * *
1457767 GCCTTAAACGGGACAAACTTGGATTTTAGTAATGATTTTCATTCATTTTGTGAATAGGCACTATA
383 GCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATA
* *
1457832 AACACATTCTCCTCATTAGGATAAATG
448 AACACATTCTCCTCATTAAGATTAATG
* * * ** ***
1457859 ATATTGAGGATTTTCTTTTGCATG-GAATCATTTCTTTATCCTATTTTCCAAAAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * * * * *
1457923 ATCCCCTAAAAAAGGCAAGTATCGATTCTCGCAATAATCTCCACTCTTTTCAAGATT-GGAATCC
65 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-A-CC
* * ** * * *
1457987 AAAAAAACATTCTTTTGATTAGGATAC-TCGGCATTGATGCTTTGGGGTCGCAAGAAAAGCTTTT
128 CAAAACACATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * * * * * *
1458051 CTTTCCATCGTGTTTCATAGAATCAAAGTTTGTATCTTAAGTAAGATAAATAAGAATAGTCATAA
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-A
* * * * * * *
1458116 C-AATCCCCATTCTTTTTAGGAATAGGCACCATAAACGTAGCCTTCTCATAAGGATGCATGATAT
256 CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
1458180 TGATGCGTTGGTTTCACAAGAAAGGC--TCTTCCCACTAATTTTTATAAAGTCTAAGTTCGTGCC
321 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
** *** * * * * * * * *
1458243 TCAAAAAAGCCAATTGTGAATTCTATTATTAATCTCCAATCATTTTGTGATTAGGTACAATAAAC
386 TCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
1458308 ACATTCTCCTTATTAGGATAAATG
451 ACATTCTCCTCATTAAGATTAATG
* * * * *
1458332 ATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTACCCAATTTTCCTTAAAATGAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* * * * * * * *
1458397 TCCAC-TAAATAAGACAAGAATCGATTTTTGCAATAATCTCCACTCTTTTCAAGATTAAGATCCA
66 TCC-CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGA-CCC
* * * * * *
1458461 AAAAAACATTCCTTTCATTAGGATAAATGACATTGATGCTTTTGTGTCGGAAGAAAAGCTTTCCT
129 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* *
1458526 TTCCACCATCTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
194 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * ** *
1458591 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACGTAGTCCTT-TCATTAGGATACGTGATATTA
259 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACACGATATTG
* * *
1458655 ATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCTACCAATTTCTGCAAAGTCTAAGTTTGTGCCT
323 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * *
1458719 CAAATCAGCC-AACATGGATTCTTA-TACTGATCTTCTTTCATTTTATGATTAGGCACTATAAAC
387 CAAATGAGCCAAACATGGATTC-TAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAAC
*
1458782 ACATTCTCCTCATTAAGATTGATG
451 ACATTCTCCTCATTAAGATTAATG
* * **
1458806 ATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTT--AATATTTTTCCTTTAAAATCAAAGT
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTT-CTTTAAAATCAAAGT
* * *
1458869 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC-TCACTTTT-AGGATTGGGAA
63 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT-TCTTTTCAAGATTAGG-A
** * * * * * * * *
1458932 CATAAAACACATTTCCTTCGTTAAGATACATGATAGTGATGATTTGGTGTCGCAATAATAGCTTT
126 CCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * *
1458997 TCTTTCCACCACTATTGATAGAATCAAAGTTTGTCTTTTAAATATA-ACAAACATGAATACTCAT
191 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGAATACTCAT
* *
1459061 ACTAATCCCCATTCTTTTC-AGAATTAGGCACTATGAACATAGTCTTCTCATTAA-GATACACGA
255 ACTAATCCCCATTCTTTTCAAG-ATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGA
* *
1459124 TATTGATGCTTTGGTTTCGCAAGAAACGC-TTTTTCCACACCAATTTTTGTAAAGTCTAAGTTCA
318 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCG
* * *
1459188 TGCCTCAAATGAGCTAAACATGGATTCTAGAATTGATCTTCATTCATTTTGTGATTAGGCACTAT
382 TGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTAT
* * *
1459253 AAACGCATTCTCCTCATTATGATTAGTG
447 AAACACATTCTCCTCATTAAGATTAATG
* *
1459281 ATATTGATGATTTTCTTTT-CAATGGAAATCTTGTCTTTGCCCTATTTTCTTTAAAATCAAAGTT
1 ATATTGATGATTTT-TTTTGC-ATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTT
* *
1459345 CATCCCTTAAATAAGATAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAAGACCC
64 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCC
* * * * * * * *
1459410 AAAAACAGAGTT-CTTTCATTAAGATACGTGACAATGATGCTTTTGTGTTGCAAGAAAAGCTATT
129 -AAAACACA-TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * *
1459474 CTTTCCATCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATTAATACTCGTAC
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* ** *** *
1459539 TATTTGCCATTCTTTTCAAGATTAGGCACCATATTTAGAGTCTTCTCACT-AGGATAC-C-----
257 TAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATAT
* * * *
1459597 TGAT--ATTGGTTTCGTAA-AAATGACGC-TTTTT-CCACCAATTTCTGTAAAGTCTAAGTTCAT
321 TGATGCTTTGGTTTCGCAAGAAA-G--GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * * *
1459657 GCATAAAATGA-CACAAACATGGATTCTAGTAATGATTTTCATTCATTTTCTGATTAGCCACTAT
383 GCCTCAAATGAGC-CAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTAT
* * *
1459721 AAACTCATTCTCCTCATTAGGATAAATG
447 AAACACATTCTCCTCATTAAGATTAATG
* * *
1459749 ATATTG--G--------TG-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* * * * * * ** *
1459803 CCCCTTAAATAAGACAAGCTTCAATTATCGCAATAATCTCCATTAC---T-AAGATTCTGATCCT
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTCAAGATTAGGA-CCC
* * * * *
1459864 AAAAGACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTATCGTAAGAAAAGCTTTTAA
129 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-C
* * * * * * *
1459929 TGT-CACCATTTTTGACAGAATCAAAGTATATCTCTTAAGTAAGACAAACATGAATAGTCATGCT
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * *
1459993 AATCCCTATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGAAATTG
258 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * ** ** * * *
1460058 AGGTTTTGGTTTTACAAGAAAAACTTTTTTCCCACTAATTTTTGTAAAGTCTAAATTCGTGCCTA
323 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * *
1460123 AAATGA-CACAAACATGGATTCTAGCAATGATTTTCATTCATTTTGTGATTAGGCACTACAAAAC
388 AAATGAGC-CAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTA-TAAAC
* * *
1460187 ACATTCTCCTCATTAGGATAAATA
451 ACATTCTCCTCATTAAGATTAATG
* * * **
1460211 ATATTGACGA-------TG---G-AAATCTTTTCTCTGCCCTATTTTCCTCCAAATCAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* * * * * * * * * ** *
1460265 CCCCTTAAATAAGAGAAGCTTCGATTATCGCAATAATCTCCACTATTTCCAAGATTCTGATCCTA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGA-CCCA
* * * * * *
1460330 AAAGACATTCCCTTCATTAGGATACATAACATAGATGCTTTGGTATCGTAAGAAAAGCTTTTAAT
130 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CT
* * * * * *
1460395 TT-CACCATTTTTGACAAAATCAAAGTATATCTCTTAAATAAGACAAACATGAATAGTCATGCTA
194 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* ** * *
1460459 ATCCCTATTCTTTTCGGGATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGGA-ATTG
259 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC-GATATTG
* ** * * * *
1460523 ATGTTTTGGTTTTACAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTTGTGCCTC
323 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* ** * * * *
1460588 AAACGAGCCAAATGTGGATTCTATTATTGATCTCCATTCATTTTGTGATTAGGCACTATAAATAC
388 AAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACAC
1460653 ATTCTCCTC-TTCAAGATTAATG
453 ATTCTCCTCATT-AAGATTAATG
* * * *
1460675 ATAGTAATGATTTTCTTTTCCATGAAAATCTTTT-TTCG-CCTATTTTCTTTAAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
** * * * * *
1460738 ATCTTTTAAATAAGGCAAGCATCGATTCTCGTAGCAATATCCATTCCTTTCAAGATTAGGACTCA
65 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCA
* * * *
1460803 AAAGCACATTCCCTTCATTAGGATACATGCCATTGATGCTTTGGGGTCACACGAAAAGC-TTTCT
130 AAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-
* * * *
1460867 TTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGATAAACATGAATGCTCATA-T
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * *
1460931 AGTTCCCCATTCTTTTCAAGATTAGGCACCATAAACATAATCTTCTCATTATGATACCCGATATT
258 A-ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * * * * * * * * **
1460996 GGTGCTTAGGTTTCGAAAAAAAGCCTTTCTTCCAACAAATTTTTGAAAAGTCTAAGTTAATGCCT
322 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
** * * * *
1461061 CAAATGATACAAACATAGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACA
387 CAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACA
* * **
1461126 CATTCTCGCT--TTAGGATAAAAA
452 CATTCTC-CTCATTAAGATTAATG
* * *
1461148 ATATTAATGATTTTTTTTGCATGAAAATCTTTT-TTTGCCCTATATTCCTTAAAATCAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* * * * * * *
1461212 TCCCTTAAATAAGACTAGCATCGATCCTTGCAACAATCTCCACTCTTTTCAAGATTGGGATCCAA
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGA-CCCA
* * **
1461277 AAACACATTCCTTTCATTAGGATACATGACTTTGATGCTTTAATGTCGCAAGAAAAGCTTTTCTT
130 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
1461342 TTCACCGTTTCTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCA-GAATACTCATACTA
195 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATGAATACTCATACTA
* * * * * * * *
1461406 TTCCCTATTCTTTTCAAGATTAGACACCATAAATATAGTCTTCTTATTAGGATACCCGATATTGG
259 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * * * *
1461471 TGCTTTGGTTTCACAAAAAAGGCTTTTTTTCCACCAATTTTTCTAAAGTCTAAGTTCGAGCATCA
324 TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
1461536 AATGAGACAAACATGGATTCTAATAATGATCTTCATTCATTTTATGATTAGGCACTATAAACATA
389 AATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * *
1461601 TTCTTCTTATTACGGTAAACG
454 TTCTCCTCATTAAGATTAATG
* *
1461622 ATATTAATGACTTTTTTTTTGCAT-AGAAATCTTTTC-TTGAACCTACTTTTC-TTAAAATCAAA
1 ATATTGATGA--TTTTTTTTGCATGA-AAATCTTTTCTTTG-CCCTA-TTTTCTTTAAAATCAAA
* * * * * * *
1461684 GTTCAACCCTGAAATAAGATAACCATCGATTCTCGCAATAATCTCC-TCTCTTTTTAAGATT-GG
61 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT-TCTTTTCAAGATTAGG
* * * *
1461747 TATCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGTTTTGGTGCCGCAAGAAAAGC
125 -A-CCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
** * * * *
1461812 -TTTCTTTCTGCCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGTCAAACAAGAATAGTC
188 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** * * * *
1461876 ATACTAATCCCCATTCTTTTCGGGATTATGCACCATAAACTTAGTTTTCTCATAAGGATACATGA
253 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
** * * * *
1461941 TATAAATGCCTTGGTTTCGCAAGAGAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGC
318 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * * ** * * * *
1462006 ACCTCAAATGAGCTATATATGGATTCTTTTATTGATCTCCATTCATTCTGTGATTAGGTACTATA
383 GCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATA
**
1462071 AACATGTTCTCCTCATTAAGATTAATG
448 AACACATTCTCCTCATTAAGATTAATG
* * *
1462098 ATATT-ATTGATTTTCTTTTGCGTGGAAAT-TTTT-TTTGTGCCTATTATTCTTTAAAATCAAAG
1 ATATTGA-TGATTTT-TTTTGCATGAAAATCTTTTCTTTG-CCCTATT-TTCTTTAAAATCAAAG
* * * ** *
1462160 TTCATCCCTTAAATATGACAAGCATCGATTCTCGTAAGAATC-CACTTTTCTTTT-GGGACTAGG
62 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTC-C-ATTCTTTTCAAGATTAGG
* * * *
1462223 TACCTAAAACACATTCCCTTCATTAGGATACATGATAGTGATGCTTTGGTGTCGCAAGAATAGCT
125 -ACCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
** ** * * *
1462288 TTTCTTTTAACTGTTTTTGATAGAATCAAAGTTTGTCTATTAAATATGACAAACATGATTACTCA
189 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * * * * *
1462353 TACTAATCCCCATTC-TTTCTAGGATTAGGCACCATGAACGTAGTCTTCCCATTAGGATACACAA
254 TACTAATCCCCATTCTTTTC-AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* * * *
1462417 TATTGATGCTTTGATTTTGCAAGAAAGGCTTTTTCCCCACCAATTTGTGTAAAGTCTAAGTTCGT
318 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * * *
1462482 GCCTCAAATAAGCCAAACATGGATTCTAGTATTAATCTCCATTTATTTTGTGATTAGGCA-TCAT
383 GCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACT-AT
1462546 AAACACATTCTCCTCATTAAGATTAATG
447 AAACACATTCTCCTCATTAAGATTAATG
* * *
1462574 ATATTAATGATTTTGCTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * *
1462639 ATCCCTTAAATAAGACAAGCATCAATTCTCGTAAAAATCTACATTGCTTTT-AGGATTAGGAACC
65 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTCAAGATTAGG-ACC
* * * * * * *
1462703 TAAAACACATT-CCTTCGTTACGATACAAGATAGTGATGCTTTGGTGTCGCAAGAATAGCTTTTC
128 CAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * * *
1462767 TTTCCATCGTTTTTTATAGAATCAAAGTTTATCTATTAAATAAGATAAACATGAATACTCATACT
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * * * *
1462832 ACTCCCCATTCTTTTCAAGATTAGGCACCATGAACGTAGTCTTTTCATTAGGAGACACTATAATT
258 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT-ATT
* * * ** *
1462897 -TTGCTTTGGTTTCGCAAGAAAAGCTTTTTCCCCATAAATTTTTGTAAAGTCTAAGTTCCTGCCT
322 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * ** *
1462961 CAAATAAGCCAAACATGGATTCAAACATTGA-TCTCTATTCATTTTGTGATTAGGCACTATAAAC
387 CAAATGAGCCAAACATGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATAAAC
*
1463025 ACATTCTCCTCACTAAGATTAATG
451 ACATTCTCCTCATTAAGATTAATG
* * *
1463049 ATATTGACGACTTTTTTTTGCATGAAAATCTATTCTTTGCCCTATTTTCTTTAAAATCAAAGTTT
1 ATATTGATGA-TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * * *
1463114 ATCTCTTAAAATCA-ACAAGCATCGATTCTTGAAACAATCTCCGTTCTTTTCAAGATT-GGTATC
65 ATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-A-C
* * * **
1463177 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATCCTTTTGCATCGCAAGAAAAGCTTTT
127 CCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * * * *
1463242 CTTTCCATCGTTGTTGATAAAATCAAACTTTGTGTCTTAAATAAGACAAACAAGAATAGTCATAC
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * * *
1463307 TAAT-CCCATTCTTTTTAGGATTAGGCATCGTAAACTTAGTCTTCTCATAAGGATACACGATATA
257 TAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * * * * * * * *
1463371 AATGCCTTGGTTTCGCATGAAAGGCTTTCTTCCCACCAATTTCTGCAAAGTCAAAGTTCGTACCC
322 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * *
1463436 CAAATGAGCCAAA-AGTGGATTCTAGTATTGA-TCTCTATTTATTTTGTGATTAAGCACTAT-AA
387 CAAATGAGCCAAACA-TGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATAAA
*
1463498 CACATTCTCCTTATTAAGATTAATG
450 CACATTCTCCTCATTAAGATTAATG
* *
1463523 ATATTGATGCTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTT
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * *
1463588 ATCTCTTAAA-ATCGACAAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATT-GGTATC
65 ATCCCTTAAATA-AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-A-C
* * *
1463651 CAAAAACACATTCCTTTCATTAGGATACATGACATCGATGCTTTGGTGTCGCAAGAAAAGCTTTT
127 CCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
** * * *
1463716 -TTTCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACAAGAATAGTCATAC
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * *
1463780 TAATCGCCATTATTTTCAGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATACAAC-ATAT
257 TAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-ACGATAT
* * * * *
1463844 AGATGCCTTGGTTTCACAAGAAAGGCTTTTTTCCTACCAATTTTTGTAAAATCTAAGTTCGTAG-
321 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT-GC
* *** * ** * *
1463908 CTCAAATAAGCCAATTGTAGATTCTAGTACGGA-TCTCTATTCATTTGGTGATTAGGCACTATAA
385 CTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATAA
*
1463972 ACACATTCTCCTCATTAAGATTAACG
449 ACACATTCTCCTCATTAAGATTAATG
* * *
1463998 ATATTAATGATTTTCTTTTGCATAAAAATCTTTTCTTTGCGCTATTTTCTTTAAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* ** * * * *
1464063 ATCCCTTAAATAAGACAACCATAAATTCTCGTAACAATCTACTTTGCTTTT-AGGA-TGGGAGCC
65 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTCAAGATTAGGA-CC
* * * * * * * * *
1464126 TAAAACAGAATCCCTTCGTTACGATACATGATAGTGATGCTTTAGTGTCGCAAGAATAGCTTTTC
128 CAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * *
1464191 TTTCCACCGTTTTTGATAGAATCAAAGTTTATCTGTTAAATAATACAAACATGAATACTTATACT
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * ** * * * * * *
1464256 ACTCCCCATTCTTCTCAAGATTAGGCAACACAAACGCAGTTTTTTCATTAGGAGACACTATTTTG
258 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * *
1464321 ATGCTTTGGTTTCGCAAGAAAAAGCTTTCTCCCCACCAATTTTTGTAAAGTATAAGTTCGTGCCT
323 ATGCTTTGGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* ** *
1464386 CAAATGAGCCAAACATGGATTCTAGCATTGATCTCCCA-TCATTTTGTGATTAGGCACTTTAAAC
387 CAAATGAGCCAAACATGGATTCTAGTATTGAT-TTTCATTCATTTTGTGATTAGGCACTATAAAC
*
1464450 ACATTCTCCTCATTATGATTAATG
451 ACATTCTCCTCATTAAGATTAATG
*
1464474 ATATTGATGATTTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
1 ATATTGATGA---TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGT
* * * * * **
1464539 TTATCTCTTAAAATCA-ACAAGCTTCAATTCTCAAAACAATCTCCATTCTTTTCAAGATT-GGTA
63 TCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-A
* *
1464602 TCCAAAAGCACATTCCCTTCATTAGGATACATGGCATTGATGCGTTT-GTGTCGCAAGAAAAGCT
126 CCCAAAA-CACATTCCCTTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCT
** * * * * *
1464666 TTTCTTTCTTCCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAGTAGTCA
189 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
** * * *
1464731 TACTAATCCCCATTCTTTTCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGAT
254 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * * * * * ***
1464796 ATAGTTGGTTTGGTTTCGCATGAAAGGCTTTCTTCCCACCAATTTCTGTAAAGTCTAAGTTCACA
319 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* ** * *
1464861 CC-CAATTGAGCCAAATGTGGATTCTAGTATTGA-TCTCTATTCATTTTGTGATTAAGCACTATA
384 CCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATA
*
1464924 AACACATTCTCCCCATTAAGATTAATG
448 AACACATTCTCCTCATTAAGATTAATG
* * *
1464951 ATATTAATGATTTTCCTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTC
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * * *
1465016 ATCCCTTAAATAAGACATGCATCAATTCTCGTAACAATCTACTTTGCTTTT-AGGATTAGGAACC
65 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTCAAGATTAGG-ACC
* * * * *
1465080 TAAAACACATTCCCTTCGTTACGATACATGACAGTGATGCTTTGGTGTCGCAAGAATAGCTTTTC
128 CAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * * *
1465145 TTTCCATCGTTTTTTATAGAATCAAAGTTTATCTGTTAAATAAGATAAACATGAATACTCATACT
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * * * *
1465210 AGTCCCCATTCTTTTCAAGATTAGGCACCATGAACGTAGTCTTTTCATTAGGAGACACTATAATT
258 AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT-ATT
* * * **
1465275 -TTGCTTTGGTTTCGCAAGAAAAGCTTTTTCCCCATAAATTTTTGTAAAGTCTAAGTTCGTGCCT
322 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* ** * * *
1465339 CAAATAAGCCAAACATGGATTCTAACATTGATCTCCATTCATTTTGTGATTAGCCACTATAAACA
387 CAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACA
*
1465404 CATTCTCCTCACTAAGATTAATG
452 CATTCTCCTCATTAAGATTAATG
* *
1465427 ATATTGAGGACTTTTTTTTGCATGAAAATCTATTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
1 ATATTGATGA-TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * * *
1465492 ATCTCTTAAAATCA-ACAAGCATCGATTCTTGAAACAATCTCCGCTT-TTTTCAAGATT-GGTAT
65 ATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCC-ATTCTTTTCAAGATTAGG-A-
* * *
1465554 CCGAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTTGTATCGCAAGAAAAGCTTT
126 CCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * * * * *
1465619 TCTTTCCATCGTTGTTGATAAAATCAAACTTTGTGTCTTAAATAAGACAAACAAGAATAGTCATA
191 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* * * * * *
1465684 CTAAT-CCCATTCTTTTTAGGATTAGGCATCGTAAACTTAGTCTTCTCGTAAGGATACACGATAT
256 CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * * * * * * *
1465748 AAATGCCTTGGTTTCGCATGAAAGACTTTCTTCCCACCAATTTCTGCAAAGTCAAAGTTCGTACC
321 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * *
1465813 CCAAATGAGCCAAA-AGTGGATTCTAGTATTGA-TCTCTATTTATTTTGTGATTAAGCATTATAA
386 TCAAATGAGCCAAACA-TGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTATAA
*
1465876 ACACATTCTCCTTATTAAGATTAATG
449 ACACATTCTCCTCATTAAGATTAATG
* *
1465902 ATATTGATGCTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTT
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * *
1465967 ATCTCTTAAA-ATCGACAAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATT-GGTATC
65 ATCCCTTAAATA-AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-A-C
* * * *
1466030 CAAAAACACATTCCTTTCATTAGGATACATGACATCGATGCTTTGATGTCGCAAGAAAAGCTTTT
127 CCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
** * * *
1466095 -TTTCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACAAGAATAGTCATAC
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * *
1466159 TAATCGCCATTATTTTCAGGATTAGGCACCGTAAACTTAGTCTTCTCATAAGGATACAAC-ATAT
257 TAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-ACGATAT
* * * * *
1466223 AGATGCCTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCGCAG-
321 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG-TGC
* *** * ** * * *
1466287 CTCAAATAAGCCAATTGTAGATTCTAGTACGGACTCT-ATTCATTTGGTGATTAGGCACTATAAA
385 CTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAA
1466351 CACATTCTCCTCATTAAGA-T--T-
450 CACATTCTCCTCATTAAGATTAATG
* * *
1466372 A-A-TGAT--TTTCTTTTGCATAAAAATCTTTTCTTTGCGCTATTTTCTTTAAAATCAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
* ** * * * * *
1466433 TCCCTTAAATAAGACAACCATAAATTCTCGTAACAATCTACTTTGCTTTT-AGGATTGGGAGCCT
66 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT-CTTTTCAAGATTAGGA-CCC
* * * * * * * *
1466497 AAAACACAATCCCTTCGTTACGATACATGATAGTGATGCTTTAGTGTCACAAGAATAGCTTTTCT
129 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * *
1466562 TTCCACCGTTTTTGATAGAATCAAAGTTTATCTGTTAAATAAGACAAACATGAATACTTATACTA
194 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * * * * **
1466627 CTCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTTTTTTCATTAGGAGACATTATATTGA
259 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * *
1466692 TGCTTTGGTTTCGCAAGGAAAAGCTTTTTCCCCACCAATTTTTCTAAAGTCTAAGTCCGTGCCTC
324 TGCTTTGGTTTCGCAA-GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * ** * * *
1466757 AAATGAGCCAAACATGGATTCTAGCAATGGTGTCCCA-TCATTTTGGGATTAGGCAATTTAAACA
388 AAATGAGCCAAACATGGATTCTAGTATTGAT-TTTCATTCATTTTGTGATTAGGCACTATAAACA
1466821 CATTCTCCTCATTAAGATTAATG
452 CATTCTCCTCATTAAGATTAATG
*
1466844 ATATTGATGATTTTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
1 ATATTGATGA----TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAG
* * * * * *
1466909 TTTATCTCTTAAAATCA-ACAAGCTTCGATTCTCGAAACAATCTCCATTCCTTTCAAGATT-GGT
62 TTCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGG-
* *
1466972 ATCCAAAAGCACATTCCCTTCATTAGGATACATGGCATTGATGCGTTT-GTGTCGCAAGAAAAGC
125 ACCCAAAA-CACATTCCCTTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGC
** * * *
1467036 TTTTCTTTCTGCCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
188 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** * * *
1467101 ATACTAATCCCCATTCTTTTCGGGATTAGGCATCATAAACTTAGTCTTCTCGTAAGGATACACGA
253 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* * * * *
1467166 TATAGTTGCTTTGGTTTCGCATA-AAAGGCTTTCTTCCCACCAATTTTTGTAAGGTCTAAGTTCA
318 TATTGATGCTTTGGTTTCGCA-AGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
** * ** * *
1467230 CACC-CAATTGAGCCAAATGTGGATTCTAGTATTGA-TCTCTATTCATTTTGTGATTAAGCACTA
382 TGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATTTTC-ATTCATTTTGTGATTAGGCACTA
* *
1467293 TAATCACATTCTCCTCGTTAAGATTAATG
446 TAAACACATTCTCCTCATTAAGATTAATG
* * *
1467322 ATACTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTTTCTTTAAAATCAAAGTTT
1 ATATTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTC
* * * *
1467387 ATCTCTTAAA-ATCGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCC
65 ATCCCTTAAATA-AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGA-CC
* * * * * * * * *
1467451 GAAAACACATTCCCTTTATTATGATACATGAAATTAATGCTTTTGCGTTGCAAG-AAAGTTTTTC
128 CAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * * ** * *
1467515 TCTCCCCCGTTTTTTATTGAATCAAAGTTTGTCTCTTAAATGGGACACATATGAATACTCATACT
193 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* *
1467580 ATTCCCCATTCTTTTCAAGAATAGG
258 AATCCCCATTCTTTTCAAGATTAGG
1467605 TAAGTTCTTG
Statistics
Matches: 10978, Mismatches: 1806, Indels: 573
0.82 0.14 0.04
Matches are distributed among these distances:
452 3 0.00
453 152 0.01
454 6 0.00
456 79 0.01
457 2 0.00
459 4 0.00
460 5 0.00
461 93 0.01
462 115 0.01
463 3 0.00
464 29 0.00
465 448 0.04
466 139 0.01
467 65 0.01
468 182 0.02
469 341 0.03
470 60 0.01
471 4 0.00
472 43 0.00
473 955 0.09
474 1554 0.14
475 3357 0.31
476 1729 0.16
477 616 0.06
478 491 0.04
479 232 0.02
480 262 0.02
481 9 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
ATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAA
AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
TGAGCCAAACATGGATTCTAGTATTGATTTTCATTCATTTTGTGATTAGGCACTATAAACACATT
CTCCTCATTAAGATTAATG
Found at i:1468721 original size:13 final size:13
Alignment explanation
Indices: 1468703--1468728 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1468693 CAATTTTTTG
1468703 TGTATCGATACAT
1 TGTATCGATACAT
1468716 TGTATCGATACAT
1 TGTATCGATACAT
1468729 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1468813 original size:20 final size:20
Alignment explanation
Indices: 1468788--1468860 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1468778 CAACTTTTTT
1468788 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1468808 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1468829 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1468849 ATGTATCGATAC
1 ATGTATCGATAC
1468861 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1468826 original size:41 final size:41
Alignment explanation
Indices: 1468767--1468860 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
1468757 CTGCCAAGAA
*
1468767 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
1468808 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
1468849 ATGTATCGATAC
1 ATGTATCGATAC
1468861 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:1468842 original size:21 final size:21
Alignment explanation
Indices: 1468767--1468842 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
1468757 CTGCCAAGAA
* *
1468767 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1468788 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1468808 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1468829 ATGTATCGATACAT
1 ATGTATCGATACAT
1468843 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1470573 original size:1 final size:1
Alignment explanation
Indices: 1470567--1470597 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
1470557 TGAGAGATTG
1470567 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1470598 TTGATTATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1474453 original size:13 final size:13
Alignment explanation
Indices: 1474435--1474460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1474425 CAATTTTTTG
1474435 TGTATCGATACAT
1 TGTATCGATACAT
1474448 TGTATCGATACAT
1 TGTATCGATACAT
1474461 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1474545 original size:20 final size:20
Alignment explanation
Indices: 1474520--1474592 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1474510 CAACTTTTTT
1474520 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1474540 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1474561 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1474581 ATGTATCGATAC
1 ATGTATCGATAC
1474593 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1474558 original size:41 final size:41
Alignment explanation
Indices: 1474499--1474592 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
1474489 CTGCCAAGAA
*
1474499 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
1474540 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
1474581 ATGTATCGATAC
1 ATGTATCGATAC
1474593 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:1474574 original size:21 final size:21
Alignment explanation
Indices: 1474499--1474574 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
1474489 CTGCCAAGAA
* *
1474499 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1474520 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1474540 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1474561 ATGTATCGATACAT
1 ATGTATCGATACAT
1474575 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1476883 original size:474 final size:475
Alignment explanation
Indices: 1475857--1476993 Score: 1328
Period size: 476 Copynumber: 2.4 Consensus size: 475
1475847 CAAGAATAGG
* * * * ** * *
1475857 TAAGCTCGTGCCTCAAATGAGCCAGATGTGGATTCTATTGTTGATCTCCATTCATTTTGTGATTT
1 TAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * * * *
1475922 GGCACTATAAACACGTGCTCCTCATTAAGATTAATAACACCGATGATTTTCTTTTGCATGAAAAT
66 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATG-AAAT
* ** * * * * * **
1475987 CTTTTCTTTGCTCTATTTTTTTTATAATCAAAGTTCATCCCTTAAATAAGATAAGCATTGATTCT
130 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAAAGAAGACAAGCATCAATTCT
* **
1476052 CGTAAAAATCTCCATTCTTTTCAAGATTGAGACCCAAAAACATAATCCTTTCATTAAGATACATG
195 CATAAAAATCTCCATAATTTTCAAGATTGAGACCCAAAAACATAATCCTTTCATTAAGATACATG
* * *
1476117 ACATTGATGTTGTGGTGTCAAAAGAAAACCCTTTCTTTCTACCATTTTTGATAGAATCAAAGTTT
260 ACATTGATGTTGTGGTGTCAAAAGAAAACCCTTTCCTTCCACCATTTTTAATAGAATCAAAGTTT
* * * * * *
1476182 TTCTTTTAAATAAGACAAACATTAATTCTCATACTATTCTCCATTCTTTTCAAGATTAAGTACCA
325 GTCTTTTAAATAAGACAAACATGAATACTCATACTAATCTCAATTCTTTTCAAGATTAAGCACCA
* * * *
1476247 TAAACAGAGTCTTCTCATTAGGATACCCGATATTGGTGCTTTGGTTTTGCAAGAAAGGTTCGTTT
390 TAAACAGAGTCTTCTCATTAGGATACACGATATTGATGCTTTGATTTTGCAAGAAAGGTTCGTTC
* * *
1476312 TCCACCAATTTTTGTAAGGTC
455 TCCACCAATATTTCTAAAGTC
* * * * *
1476333 TAAGTTCGTGCCTAAAAAGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTA
1 TAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
*
1476398 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-AAAGT
66 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAA--
* * * *
1476462 TCTTTTTTTTGCCCTATTTTCCTTAAAATCAAATTTCATCCTTTGAAGAAGACAAGCATCAATTG
129 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAAAGAAGACAAGCATCAATTC
** * * * * * * *
1476527 TCATAGCAATCTCCATAATTTTCTAGATTGGGATCCACAAATA-AATTCCTTTCATTAGGATAGA
194 TCATAAAAATCTCCATAATTTTCAAGATTGAGACCCAAAAACATAA-TCCTTTCATTAAGATACA
** * * *
1476591 TGACATTGATGCTT-TGGTGTCACCAG-AAAGCTTTTCCTTCCACCGTTTTTAATAGAATCAAAG
258 TGACATTGATG-TTGTGGTGTCAAAAGAAAACCCTTTCCTTCCACCATTTTTAATAGAATCAAAG
* *
1476654 TTTGTCTCTTT-AATAAGACAAACATGAATAGTCATACTAATC-CAATTCTTTTCAAGATTAGGC
322 TTTGTCT-TTTAAATAAGACAAACATGAATACTCATACTAATCTCAATTCTTTTCAAGATTAAGC
* *
1476717 ATCATAAAC-GTAGTCTTCTC-TTAAGGATACACGATATTGATGTTTTGATTTTGCAAGAAAAGC
386 ACCATAAACAG-AGTCTTCTCATT-AGGATACACGATATTGATGCTTTGATTTTGCAAG-AAAG-
*
1476780 TTTC-TTCTCC-CCAATATTTCTAAAGTC
447 GTTCGTTCTCCACCAATATTTCTAAAGTC
* * * *
1476807 TAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTCGTACTAATCTTCATTTATTTTGTGATTA
1 TAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* *
1476872 GGCATTATAAACGA-ATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGGATGGAAA
66 GGCACTATAAAC-ACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCAT-GAAA
* * *
1476936 TCTTTTCTTTGCCCTATTTTTCC-TAAAACCAAAATTCATCCTTTACA-ACGACAAGCAT
129 TCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAATTCATCCTTTAAAGAAGACAAGCAT
1476994 TGATTCTCGT
Statistics
Matches: 558, Mismatches: 90, Indels: 29
0.82 0.13 0.04
Matches are distributed among these distances:
473 13 0.02
474 227 0.41
475 82 0.15
476 234 0.42
477 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (475 bp):
TAAGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
GGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCTTTAAAGAAGACAAGCATCAATTCTC
ATAAAAATCTCCATAATTTTCAAGATTGAGACCCAAAAACATAATCCTTTCATTAAGATACATGA
CATTGATGTTGTGGTGTCAAAAGAAAACCCTTTCCTTCCACCATTTTTAATAGAATCAAAGTTTG
TCTTTTAAATAAGACAAACATGAATACTCATACTAATCTCAATTCTTTTCAAGATTAAGCACCAT
AAACAGAGTCTTCTCATTAGGATACACGATATTGATGCTTTGATTTTGCAAGAAAGGTTCGTTCT
CCACCAATATTTCTAAAGTC
Found at i:1478362 original size:475 final size:476
Alignment explanation
Indices: 1477060--1487307 Score: 9472
Period size: 475 Copynumber: 21.9 Consensus size: 476
1477050 TTCATTAGGT
* * * * * *
1477060 TACACGATATTGGTGCTTTGGTTTTGCAAGAAAGG-ATTTTTCCCACTAATTATTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * *
1477124 AGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * * *
1477189 --------ACA-A-TCTCCTAATTAGGATAAATGATATTTATGATTTT-ATTTGTA-GCGAAATC
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATG-GAAATC
* * *
1477242 TTTTCTTTG---------C--------CAAAGTTCATCCTTTAAATAAGACAAGCATTGACTCTC
195 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * * ** *
1477290 ATAACAGTC-CTATTCGTTTT-ATGATTAGGAACCAAAAACACATTCCCTTCAACAGGATACGTG
260 GTAACAGTCTCCATTC-TTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
* * * ** * *
1477353 ACATTAATGCTTTAGTG-CTGCAAGAAAAGCTTTTCTTTCCATAGTTTTTTATAGAACCAAAGTT
324 ACATTGATGCTTTGGTGTC-ACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
* * * * *
1477417 TGTCTTTTAAATAAGACAAACATGAATAGC-CGTACCAATCCTCATTCTTTTTGGGATTAGGCA-
388 TGTCTCTTAAATAAGACAAACATGAATA-CTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * **
1477480 TAGTAAAGGTAGTTTTCTTTTAAGGA
452 CA-TAAACGTAGTCTTCCCTTAAGGA
* * * *
1477506 TACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCCCCAATTTTTATAATA-TCT
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA-AGTCT
*** * * * * * * ***
1477570 AAGTTTGCGCCTAAAATAAGCCAAATGTGGATTCTAGTATTCATTTTAATTCATTTTGCCTTTAG
65 AAGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAG
* * * * * * * *
1477635 GCACTACAAACACATTCTCCTCTTTAAGATTACTGGTTTTGATGATTTTCTTTTACAAGAAAATC
130 GCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * * * * *
1477700 TTTTCTTTACCTTGTTTTCTATGAAATCAAAGTTCATCCCTTAAATAAGATAAGCATCAATTTTC
195 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
1477765 GTAATAGTCTCTATTATTTTCAAGATTGGGAAT-CTAAAACACATTCCCTTCGTTAGGATACATG
260 GTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGATACATG
* * * *
1477829 ACAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTGTTGATAGAATCAAAGTTT
324 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
1477894 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
389 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
1477959 TAAACGTAGTCTTCCCTTAAGGA
454 TAAACGTAGTCTTCCCTTAAGGA
* * * * * *
1477982 TACACGATACTGATGCTTTAGTTTTGCAAAAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCT-
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * **
1478046 AGCTTCGTGCCTCAAAAGAGCCAAATGTGGATTCTACTATTAATCCCCATTCATTTTGTGATTAG
66 AG-TTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAG
* * *
1478111 GCACTACAAAC-CATTCTCTTCATTAAGATTAATGATATTAATGATTTTCTTTTGCATGGAAATC
130 GCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATC
** * * *
1478175 TTTTCTTTGCCCTATTTTCTTTAAAATTC-AAGTTTGTCCTTTAAA-ATAGACATGCATCGATTA
195 TTTTCTTTGCCCTATTTTCTTTAAAA-TCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATTC
* * * *
1478238 TCATAACAATCTCCATTCTTTTCAAGATTGGGATCGAAAAACACAGT-CCTGTCATTAGGATACA
258 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCT-TCATTAGGATACA
* * *
1478302 AGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGG
322 TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * ** * *
1478367 TTGTCTCTTAAATACGACAAACAGGAATACTCATAC----CCTTAATTCTTTTAGAGATTAGGCA
387 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC-CCATTCTTTTCGGGATTAGGCA
** * *
1478428 TTATAAACATAGTCTTCTCATT-AGGA
451 CCATAAACGTAGTCTTC-CCTTAAGGA
* * * * *
1478454 TACATGATGTT-AGTGCTTTGGTTTCACAAGAAAGGATTTTTTCCCACCAATTATGGTAAAGTCT
1 TACATGATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
* * * * * ** * *
1478518 AAGCTCATGCCACAAATGAGACAAACATGGATTCCAGTAAGGATTTTCATTTATTTTGTGATTAG
65 AAGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAG
* * * * * * * **
1478583 GCACAACAAACACATTCTCCTCGTTAGGATAAATGAAATTGATGGTTTTCTTTTGCATGGAGTTC
130 GCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * *
1478648 TTTTTTTTGCCCTGTTTTGC-TTAAAATCAAAGTTCGTCCTTTAAATAAGACAAGCATCAATTCT
195 TTTTCTTTGCCCTATTTT-CTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * * **
1478712 CGAAACAATCTCCACTT-TTTTCTAGATTGGGAT-AAAAAAGCACATTCTTTTCATTAGGATACA
259 CGTAACAGTCTCCA-TTCTTTTCAAGATTGGGATCCAAAAA-CACATTCCCTTCATTAGGATACA
* * * *
1478775 TGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAACT
322 TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * * *
1478840 TTATCTCTTAAATAAGATAAACATGATTAGTCATACTAATCCTCATTCTTTTCCGGATTAGGCAC
387 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * ***
1478905 CGTAAACATAGT-TTTTTTTAAGGA
452 CATAAACGTAGTCTTCCCTTAAGGA
* * * ** * *
1478929 TACATGATATTGATGCTTTGGTTTTGCGAGAAAGGCCTTTTTCCCATAAAATTTTGTAAAGGCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
** * * *
1478994 AGTTTGTGCCTCAAAAGTGCCAAATATGGATTCTAGTATTGATCTCCATTCATTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * * * *
1479059 TACTATAAACACATTTTCCCCATTCAGATTAATGATATTGATGATTTTCTCTTGCATGAAAATAT
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * *
1479124 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAA-ATATACATGCATCGATTCTC
196 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATTCTC
* * * * * * *
1479188 GTAACAATCTCCATTATTTTCAAGATTAGGTTCCAAAAACATATTCCCTTCTTTAGGATAGATGA
260 GTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGA
* * * * *
1479253 CATTGATGCTTTGGTGTCACAAGAAAGGTTTTTCTTTCCACTGTTTCTGATAGAATCAAAATTTG
325 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * *
1479318 TCTCTTAAATACGACAAACAGGAATACTCATACTATTTCCCATTCTTTTTGGGGTTAGGCACCAT
390 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCAT
* *
1479383 AAACGTAGTCTTCTCATT-AGAA
455 AAACGTAGTCTTC-CCTTAAGGA
* * * * * * *
1479405 TACACGATATTGGTGCTTTGATTTTGCAAGAAAGGATTTTTTCCCACCAATTATTGTAAAGCCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* ** ** *
1479470 AGTTCATGCCTAAAATGAGAGAACCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * *
1479535 CACTATTAACACAATCT-C-C--T-A-ATT-AGGATA--GATGA---T-ATTT--AT-G--AT-A
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * *
1479581 TTTCTTTGCCTTATTTTCCTTAAATTCAAAGTTAATCCCTTAAATAAGAC-AGTATCGATTCTCG
196 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * *
1479645 TAACAGTC-CCATTCTTTTCATGGTTAGGAACCAAAACCACATTCCCTTCTTTAGGATACGTGAC
261 TAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * *
1479709 ATTAATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGC
326 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * *
1479774 CTCTTAAATAAGATAAACAAGAATAGTCACATTAATCCCCATTCTTTTTGGAATTAGACACCATA
391 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
* * * ** *
1479839 AACTTAGTTTTCTCAAAAAGA
456 AACGTAGTCTTCCCTTAAGGA
* * * * * * * *
1479860 TACACGATATCGGTGCTTTGGTTTCGTAAAAAACGCTTTCTTCCCCCCAATTTTTGTAATA-TCT
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA-AGTCT
*** * * *
1479924 AAGTTCGCACCTCAAATGAGCCAAATGTGGATTCTAGTTTTGATC-TCAATTCATTTTGCCG-TT
65 AAGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTC-ATTCATTTTG-TGATT
* * * *
1479987 AGGCACTATAAACACATTCTTCTCTTTAAGATTAATGATTTTGATGATTTTCTTTTGCATGAAAA
128 AGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAA
* * *
1480052 TCTTTTCTTTACCCTATTTTCGTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTC
193 TCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * * * * *
1480117 TTGTAACAATCTCCATTATTTTCAGGGTTGGAAAACTAAAAA-ACATTCCCTTCCTTAGGATACA
258 TCGTAACAGTCTCCATTCTTTTCAAGATTGG-GATCCAAAAACACATTCCCTTCATTAGGATACA
* * * * * * *
1480181 CGGCAGTGATGCTTCGGTGTCGCAAGAAAAGCTTTTGTTTCCAGCGTTTTTGATAGAATCAAAGT
322 TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * *
1480246 TTGTCTCTTAAATACA-ACAAACATGAATACTCAAAAT-ATTCCCATTGTTTTCGAGATTAGGCA
387 TTGTCTCTTAAATA-AGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCA
* *
1480309 CCACAAACGTAGTCTTCTCATT-AGGA
451 CCATAAACGTAGTCTTC-CCTTAAGGA
* * * * * * *
1480335 TTCATGATATTGGTGCTTTGGTTTCGTAAGACAGGTTTTTTTCTCACCAATTATTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * * *
1480400 AGTTCATGCCTGAAATGAGACAAACATGGATTCTAGGAATGATTTTCATTCATTTTGTGATTGGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * *
1480465 CACTATAAACACAATT-GCCTAATTAGGA-T-A--A-A-TGAT-A------ATT--AT-G--AT-
131 CACTATAAACAC-ATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * *
1480510 ATTTCTTTTCCCTATTTT-TGTTAAAATCAAAGTTTATCTCTTAAATAAG-CTAAGCATCGATTC
195 TTTTCTTTGCCCTATTTTCT-TTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAGCATCGATTC
* ** * *
1480573 TCGTAATAGTCTCCA-TAATTTCTAGGATTGGGAAT-CTAAAACACATTCCCTTCATTAGGATAC
258 TCGTAACAGTCTCCATTCTTTTC-AAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGATAC
* * *
1480636 ATGACAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAG
321 ATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * * * * * *
1480701 TTTGTCTCTTAAATACGACAAACATGACTACACATACTATTCCCCACTCTTTTCGAGAATAGGTA
386 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCA
* *
1480766 CCATAAACATAGTCTTCTCATT-AGGA
451 CCATAAACGTAGTCTTC-CCTTAAGGA
* * * * * ** * *
1480792 TACACGATATTGGTACTTTGGTTTCACAAGAAAAGAATTTTTCTCACCAATTATTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * ** * * *
1480857 AGTTCATGCCTGAAATGAGACAAGCATGGATTCTAGTAATGATCTTCATTAATTTTGTGGTTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * *
1480922 CACTATAAACACAATCTACTAATTAGGA-T-A--A-A-TGAT-A------TTT--AT-G--A-CA
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * *
1480968 TTTCTTTGCCCAATTTTCCTTAAACTCAAAGTTCGTCCCTTAAATAAGACAAGCATCGATTCTCG
196 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * * *
1481033 TAACAATC-CCATTCTTTTCATGATTAGGAACAAAAAACACATTCCCCTCCTTAGGATACGTGAC
261 TAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * *
1481097 ATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGCTTGC
326 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
1481162 CTCTTAAATAAGACAAACAAGAATAGTCACACTAATTCCCATTCCTTTT-GGGATTAGACACCAT
391 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT-CTTTTCGGGATTAGGCACCAT
** * * *
1481226 AAATTTAGTCTTCTCATAAGCA
455 AAACGTAGTCTTCCCTTAAGGA
* * * * * *
1481248 TACACGATATTGTTGCTTTGGTTTCGTAAGAAACGG-TTTCTTCCCCCCAATTTTCGTAATA-TC
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAA-GGCTTTTTTCCCACCAATTTTTGTAA-AGTC
* * * *
1481311 TAAGTTC-TCACCTCAAATTAGCCAAATATGGATTCTACTATTGATC-TCAATTCATTTTGCCG-
64 TAAGTTCAT-GCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTC-ATTCATTTTG-TGA
* * * * *
1481373 TTAGGCACTATAAGCAGATTCTCCTCTTTAAGATTAATGATTTTGATGATTTTCTTTTGCATGAA
126 TTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGA
* * * **
1481438 AATATTTTCTTTACCCTATTTTCTTTAAAATCAAAGTTTATCCCCGAAATAAGACAAGCAAT-GA
191 AATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGA
* * * * * * *
1481502 TTCTCGTAATAGTCTCCATTATTTTTAGGATTGGGAAT-CTAAAACATATTCCCTTCGTTAGGAT
255 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGAT
* * * *
1481566 ACATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-TGTTTTTGATAGGATCAA
319 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* *
1481630 AGTTTGTATCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTGGGATTAGG
384 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGG
1481695 CACCATAAACGTAGTCTTCCCTTAAGGA
449 CACCATAAACGTAGTCTTCCCTTAAGGA
* * * * * * *
1481723 TACATGACACTGATGCTTTGGTTTTGCAGGAATGGCTTTCTTCCCACAAATTTTTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * *
1481788 GGTTTC-TGCCTCAAAAGTGCCAAATGTGGATTCTAGT-TAGATC-TCTATTCATTTTGTGATTA
66 AG-TTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTC-ATTCATTTTGTGATTA
* * ** ** * * * *
1481850 GGCACTATAAACACATTCTTCTTATTTGGAAAAATAATAATGATTATTTTCTTTTGCATGAAAAT
129 GGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * *
1481915 CTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCTTTAAA-ATTGACAAGCATTGATTC
194 CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATTC
* * ** * *
1481979 TTGTAACAGTTTCCATTCTTTTCAAGATTGGGATTGAAAAATACATTCCCTTCATTAGGATACAA
258 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACAT
* * *
1482044 GACATTAATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTT
323 GACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
1482109 TCTCTCTTAAATATGACAAACATGAATACTCATACTATTCCCCATTTCTTTT-AGGATTAGGCAC
388 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA-TTCTTTTCGGGATTAGGCAC
* **
1482173 CATAAACATAGTCTTCTGATT-AGGA
452 CATAAACGTAGTCTTC-CCTTAAGGA
* * * * * * *
1482198 TACATGATATCGCTGCTTTGGCTTCGCAAGAAAGGATTTTTTCCCACCAATTATTGTAGAGTCCA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * *
1482263 AGTTCATTCCTTAAATGA-CACAAACATGGATTTTGGTAATGATCTTCATTCATTTTGTGATTAG
66 AGTTCATGCCTCAAATGAGC-CAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAG
* * * * * *
1482327 GCACTATAAACACAATCTCCTAATT-AGTATAAACGATACTTG-TGATAATT-TTTTACA-GTGA
130 GCACTATAAACACATTCTCCTCATTAAG-ATTAATGATA-TTGATGAT-TTTCTTTTGCATG-GA
* * * *
1482388 AATTTTTTCTTTGCCCTATTTTCCTTAAATTCAAAGTTCATCCCCTAAATAAGACAAGCATCGAT
191 AATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * * * * * * * *
1482453 TCTGGTAACGGTC-CTATTCTTTTCACGCTTAGGAACCAAAAACGCATTCCCTTCTTTAGGATAT
256 TCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATAC
* * * *
1482517 GTGACATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-CCTATTTTTCATAGAATCAAA
321 ATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAA
* * * * * *
1482581 GTTTGTCTTTTAAATAAGGCAAAACAAGAATAGTCACACTAATCCCCATTCTTTTTGGGATTAGG
385 GTTTGTCTCTTAAATAAGAC-AAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGG
* * * * *
1482646 CACCATAAACTTAGTCCTCTCATCAGGA
449 CACCATAAACGTAGTCTTCCCTTAAGGA
* * * * *
1482674 TACACGATATTGATG-TTCTGGTTTCGCAAGAAATGCTTTCTTCCCCCCAATTTTTATAATA-TC
1 TACATGATATTGATGCTT-TGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA-AGTC
* * * * **
1482737 TAAGCTTGC--GCTTCAAATGAGCCAAATGTAGATTCTAATATTGATC-TCAATTCATTTTGCCA
64 TAAG-TT-CATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTC-ATTCATTTTGTGA
* * * * *
1482799 TTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGGTTTTGATGATTTTCTTTTACA-GGA
126 TTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGG-
* * * *
1482863 AAATCTTTTCTTTACCCTATGTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAA
190 AAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * * * * * ***
1482928 TTCTCGTAACAGCCTCCATTATTTTTAGGTTTGGGAAT-CTAAAACACATTCCCTTTGCTAGGAT
255 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGAT
* ** * * * *
1482992 ACACGACGGTGATGATTTGGTGTCGCAAGAAAAGCTTTTCATTGCACCGTTTTTGATAGAATCAA
319 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * *
1483057 AGTTTGTCTTTTAAATAAGACAAACATGAATGCTCATACTAATCCCCATTATTTTCGGGATTAGG
384 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGG
1483122 CACCATAAACGTAGTCTTCCCTTAAGGA
449 CACCATAAACGTAGTCTTCCCTTAAGGA
** * * * *
1483150 TACACAATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCACACAAATTTTTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * ** * * *
1483215 GGCTCGTGCCTCAAAAGTGCCAAATGCGCATTCTAGTATTAATCTCCATTCATTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * *
1483280 CACTATAAACACATTCTTCTCATTAAGATTAATGATATTGATGAGTTTCTTTTGCATGAAAATCT
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * ** *
1483345 TTTCTTTGCCTTATTTTCTTTAAAATCAATGTTTGA-CCTTTAAA-ATAGACATCCATCAATTCT
196 TTTCTTTGCCCTATTTTCTTTAAAATCAAAG-TTCATCCCTTAAATA-AGACAAGCATCGATTCT
* *
1483408 CGTAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAACACATTCCCTTCATTAGGATACATG
259 CGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
* * * *
1483473 ACTTTGATGCTTTGGTGCCACCAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTT
324 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * *
1483538 GTCTCTTAAATACGACAAACATGAATACTTATACT-ATTCCCATTCTTTTCAGGATTAGGCACCA
389 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* *
1483602 TAAACGTGGTCTTCTCATTAA-GA
454 TAAACGTAGTCTTC-CCTTAAGGA
* * * * * * *
1483625 TTCATGATATTGTTGCTTTGGTTTCGTAATAAAGGTTTTTTTCTCACCAATTATTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * *
1483690 AGTTCATGCCTGAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * ** *
1483755 CACTATAAACACAATC-CC-C--T-A-ATT-AGGATA--AATGA---T-AATT--AT-G--AT-A
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * *
1483801 TTTCTTTTCCCTATTTTCGTTAAAATCAAAGTTTATCCCTTAAATAAAGCCAAGCATCGATTCTC
196 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTCTC
* ** * *
1483866 GTAACAGTCTCCATTATTTTCTGGATTGGGAAT-CTAAAACACATTCCCTTCGTTAGGATACATG
260 GTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGATACATG
* * *
1483930 ACAGTGAT-TTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
324 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
1483993 ATCTCTTACATACGACAAACATGACTACTCATACTATTCCCCATTCTTTTCGGGATTAGGTACCA
389 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
*
1484058 TAAACGTAGTCTT--CTTATTTGGA
454 TAAACGTAGTCTTCCCTTA--AGGA
* * * * * * *
1484081 TACACGATATTGGTACATTGGTTTCGCAAGAAAGGATTTTTTCTCACC-ATTTATTGTAAAGTGT
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTT-TTGTAAAGTCT
* * * ** * *
1484145 AAGTTCTTGCCTAAAATGAGACAAGCATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
65 AAGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAG
* * * * *
1484210 GCACTGTAAACACAATCTACTAATTAGGA-T-A--A-A-TGAT-A------TTT--AT-G--AT-
130 GCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * *
1484256 ATTTCTTTGCCCTATTTTCCTTAAACTCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTT
195 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * * *
1484321 GTAATAGTC-CCATTCTTTTCATGATTGAGAACCAAAAACACATTCCCTTCCTTAGGATACGTGA
260 GTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGA
* * * * *
1484385 CATTGATACTTTGGTGTCACAAGAAAAGCTCTTCTTTCCACCATTTTTTATAGAACCAAAGTTT-
325 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * * *
1484449 CCTCTTAAATAAGACAAACAAGAATAGTCACACTAATTCCCATTCTTTTTGGGATTAGACACCAT
390 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCAT
* * *
1484514 AAACTTAGTCTTCTCATAAGGA
455 AAACGTAGTCTTCCCTTAAGGA
* * * *
1484536 TACATGATA-T--TG--TTGCTTT----------GC---TTTGCCA--TATTTTCGTAATA-TCT
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA-AGTCT
* * * * * * *
1484580 AAGTTTATGCCTCTAATCAGCCAAATGTGGATTCTAGTATTGATCTTAATTTATTTTGCCG-TTA
65 AAGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTG-TGATTA
* * * * *
1484644 GGCACTATAAACACATTCTCCTCTTTAAGATTAATGATTTTGATGATTTTCCTTTGCTTGAAAAT
129 GGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * * *
1484709 ATTTTCTTT-CCCTATTTTCCTTAAAATCAAAGTTTATCCCTCAAATAAGATAAGCATCGATTCT
194 CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * * * *
1484773 CGTAACAGTCTCCATTATTTTCAGGATTGGGAAT-CTAAAACATATTCCCTTCGTTAGGATAGAT
259 CGTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGATACAT
* ** * * *
1484837 GACAATGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGGATCAAAGTT
323 GACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
1484902 TGTGTCTTAAATAAGTCAAATATGAATACTCATAGTAATCCCCATTCTTTTCGGGATTAGGCACC
388 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* *
1484967 ATAAACGTATTCTTCCTTTAAGGA
453 ATAAACGTAGTCTTCCCTTAAGGA
* * * * * **
1484991 TACATGATACTGATGTTTTGGTTTTGCAAGAATGGCTTTCTTCCCATAAATTTTTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * * *
1485056 GGTTCGTGCCTCAAAAGTGCCAAATGTGGATTCTAGTATAGATCTCCATTCATTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * * ** * * *
1485121 CACTATAAAGATATTCTCATTATTAGGAAAAAT-AGTAATGATTATTTT-TTTTGCATGAAAATC
131 CACTATAAACACATTCTCCTCATTAAGATTAATGA-TATTGATGATTTTCTTTTGCATGGAAATC
* * * *
1485184 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCATTAAA-ATTGCCAAGCATTGATTCT
195 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATTCT
* * **
1485248 TGTAACAATCTCCATTCTTTTCAAGATTGGGATTGAAAAACACATTCCCTTCATTAGGATACATG
259 CGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
* * ** **
1485313 ACAGTAATGCTTTGGCATCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTT
324 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * *
1485378 ATCTCTTAAATACGACAAACATGAATAGTCATACTCATACTATTCCCCATTCTTTTCAGGATTAG
389 GTCTCTTAAATAAGACAAACATG---A---ATACTCATACTAATCCCCATTCTTTTCGGGATTAG
* * **
1485443 GCACCATAAGCATAGTCTTCTGATT-AGGA
448 GCACCATAAACGTAGTCTTC-CCTTAAGGA
* * * * * * *
1485472 TACATGATATCGGTGCTTTGGCTTCGCCAGAAAGG--TTTTTCCCACCAATTATTGTAGATTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * * * * *
1485535 AGTCCATTCCTCAAATGAGACAGACATGGATTCTGGTAATCATCTTCATCCATTTTGTGATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * * *** *
1485600 CACTATAAACACAATCTCCTAATTAGGATAAATGATATTTATGACAAT-TTTTGTA-GTGAAATC
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATG-GAAATC
* * *
1485663 TTTTCTTTG---TATTTTCCTTAAATTCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTC
195 TTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * ** * * * *
1485725 GTAAAAGTC-CCATTCATTTCTTGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACGTGA
260 GTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGA
* * *
1485789 CATTGATACTTTGGTGTCATAAGAAAAGCTTTTCTTTCC-CCTGTTTTTGATAGAGTCAAAGTTT
325 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTT
* * * *
1485853 GTCTCCTAAATAAGACAAAACATGAATAGTCACACTAATCCCCATTCTTTTTGGGATTAGGCACC
389 GTCTCTTAAATAAGAC-AAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * *
1485918 ATAAACTTAGTCCTCTCATCAGGA
453 ATAAACGTAGTCTTCCCTTAAGGA
* * * * * * *
1485942 TACACGATATTGATGTTTTGGTTTTGCAAGAAATGCTTTCTTCCCTCCAATTTTTATAATA-TCT
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAA-AGTCT
** * * * **
1486006 AAGTTTGTGCCTCAAATGAGCCAAATGTAGG-TTCTAGTATTGATCTTAATTCCTTTTGCCATTA
65 AAGTTCATGCCTCAAATGAGCCAAATAT-GGATTCTAGTATTGATCTTCATTCATTTTGTGATTA
* * * * * *
1486070 GGCACTATAAACACATTATCCTCTTTAAGATTAATGGTTTTGATGATTTTCTTTTGCAAGAAAAT
129 GGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAAT
* *
1486135 CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCT
194 CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * * * * **
1486200 TGTAACAGTCTCCATTATTTTCAGGATTGGGAAT-CTACAACACATTCCCTTCGTTAGGATACGC
259 CGTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGATACAT
* * * * * *
1486264 GAAAGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCACCATTTTTGGTAGAATCAAAGTT
323 GACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
* *
1486329 TGTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGAGATTAGGCACC
388 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * *
1486394 ATAAACGTAGTCTTCCTTTCAGCA
453 ATAAACGTAGTCTTCCCTTAAGGA
* **
1486418 TACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCATAAATTTTTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* ** * * * * * * *
1486483 GGTTTGTGCCTCAAAAGTGCCGAATGTGGATTCTAGTATTAATCTCCATTCATTTTGTAATTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* *
1486548 CACTATAAACACATTCTCATCATTAAGATTAATGATATTGATGATTTTTTTTTTTGCATGGAAAT
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA--TTTTCTTTTGCATGGAAAT
* * * ** **
1486613 CTTTTCCTCGCCATATTTTCTTTAAAATCAAAGTT--TGAC---AAT-AGACATCCATCGATTCT
194 CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
*
1486672 CGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
259 CGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATG
* * * *
1486737 ACTTTGATGCTTTGGTGTCACAAGAAAAGCTTTTATTTCCATCGTTTTTGATATAATCAAAGTTT
324 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * **
1486802 GTCTCTTACATACGACAAACATGAATACTCATACTATTCCCCATTCTTTTCGGGATTAGGCATTA
389 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* *
1486867 TAAACATAGTCTTCTCATT-AGGA
454 TAAACGTAGTCTTC-CCTTAAGGA
* * * * *
1486890 TACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGATTTTTTCCCACTAGTTATTGTAAAGTCTA
1 TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * *
1486955 AGTTCATGCCTGAAATAAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTG-TTAGG
66 AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
* * * * *
1487019 CACTATAAACACA--AT-CTC-TT-A-ATT-AGGATA--AATGA---T-ATTT--AT-G--AT-A
131 CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * *
1487065 TTTCTTTGCCTTATTTTCCTTAAATTAAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCG
196 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * * *
1487130 TAGCAGTC-CCACTCTTTTCATGATTGGGAACCAAAAATATATTCCCTTCTTTAAGG-TACGTGA
261 TAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATT-AGGATACATGA
* *
1487193 CATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATAAAAGTTTG
325 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * *
1487258 TCCCTTAAATAAGACAAGCATGAATAATCATAATAGTCTCCATTCTTTTC
390 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC
1487308 AAGAATGGGT
Statistics
Matches: 7992, Mismatches: 1512, Indels: 587
0.79 0.15 0.06
Matches are distributed among these distances:
435 79 0.01
436 7 0.00
437 6 0.00
439 1 0.00
440 1 0.00
441 4 0.00
442 1 0.00
446 31 0.00
447 71 0.01
448 4 0.00
450 34 0.00
451 2 0.00
452 3 0.00
453 65 0.01
454 162 0.02
455 721 0.09
456 808 0.10
457 425 0.05
458 29 0.00
459 5 0.00
460 13 0.00
461 7 0.00
462 17 0.00
463 4 0.00
464 11 0.00
465 3 0.00
466 5 0.00
467 9 0.00
468 11 0.00
469 17 0.00
470 86 0.01
471 28 0.00
472 551 0.07
473 280 0.04
474 321 0.04
475 1894 0.24
476 1760 0.22
477 251 0.03
478 57 0.01
479 125 0.02
480 1 0.00
481 80 0.01
482 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
AGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGG
CACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
TAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
AACGTAGTCTTCCCTTAAGGA
Found at i:1483100 original size:476 final size:475
Alignment explanation
Indices: 1480968--1487307 Score: 6043
Period size: 476 Copynumber: 13.5 Consensus size: 475
1480958 ATTTATGACA
* * * **
1480968 TTTCTTTGCCCAATTTTCCTTAAACTCAAAGTTCGTCCCTTAAATAAGACAAGCATCGATTCTCG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * *
1481033 TAACAATC-CCATTCTTTTCATGATTAGGAA-CAAAAAACACATTCCCCTCCTTAGGATACGTGA
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATC-AAAAACACATTCCCTTCGTTAGGATACATGA
* * * *
1481096 CATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGCTTG
130 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * *
1481161 CCTCTTAAATAAGACAAACAAGAATAGTCACACTAATTCCCATTCCTTTT-GGGATTAGACACCA
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT-CTTTTCGGGATTAGGCACCA
** * * * *
1481225 TAAATTTAGTCTTCTCATAAGCATACACGATATTGTTGCTTTGGTTTCGTAAGAAACGG-TTTCT
259 TAAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GGCTTTCT
* * * * * * *
1481289 TCCCCCCAATTTTCGTAATA-TCTAAG-TTCTCACCTCAAATTAGCCAAATATGGATTCTACTAT
323 TCCCACCAATTTTTGTAA-AGTCTAAGCTT-GCGCCTCAAATGAGCCAAATGTGGATTCTAGTAT
* * * *
1481352 TGATCTCAATTCATTTTGCCG-TTAGGCACTATAAGCAGATTCTCCTCTTTAAGATTAATGATTT
386 TGATCTC-ATTCATTTTG-TGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATAT
*
1481416 TGATGATTTTCTTTTGCATGAAAATAT
449 TGATGATTTTCTTTTGCATGAAAATCT
* **
1481443 TTTCTTTACCCTATTTTCTTTAAAATCAAAGTTTATCCCCGAAATAAGACAAGCAAT-GATTCTC
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGC-ATCGATTCTC
* * * * *
1481507 GTAATAGTCTCCATTATTTTTAGGATTGGGAATCTAAAACATATTCCCTTCGTTAGGATACATGA
65 GTAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGA
* * * *
1481572 CAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-TGTTTTTGATAGGATCAAAGTTTG
130 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* *
1481636 TATCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAT
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCAT
* * * * * * *
1481701 AAACGTAGTCTTCCCTTAAGGATACATGACACTGATGCTTTGGTTTTGCAGGAATGGCTTTCTTC
260 AAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
* * * * * *
1481766 CCACAAATTTTTGTAAAGTCT-AGGTTTCTGCCTCAAAAGTGCCAAATGTGGATTCTAGT-TAGA
325 CCACCAATTTTTGTAAAGTCTAAGCTTGC-GCCTCAAATGAGCCAAATGTGGATTCTAGTATTGA
* * ** ** * *
1481829 TCTCTATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT-TATTTGGAAAAATAATAATGA
389 TCTC-ATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCT-TTAAGATTAATGATATTGA
*
1481893 TTATTTTCTTTTGCATGAAAATCT
452 TGATTTTCTTTTGCATGAAAATCT
* * * * * *
1481917 TTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCTTTAAA-ATTGACAAGCATTGATTCTT
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATA-AGACAAGCATCGATTCTC
* * * * * * *
1481981 GTAACAGTTTCCATTCTTTTCAAGATTGGGATTGAAAAATACATTCCCTTCATTAGGATACAAGA
65 GTAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGA
* * * *
1482046 CATTAATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTC
130 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * *
1482111 TCTCTTAAATATGACAAACATGAATACTCATACTATTCCCCATTTCTTTT-AGGATTAGGCACCA
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA-TTCTTTTCGGGATTAGGCACCA
* * * * * * * *
1482175 TAAACATAGTCTTCTGATTAGGATACATGATATCGCTGCTTTGGCTTCGCAAGAAAGGATTTTTT
259 TAAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * * * ** * * *
1482240 CCCACCAATTATTGTAGAGTCCAAG-TT-CATTCCTTAAATGA-CACAAACATGGATTTTGGTAA
324 CCCACCAATTTTTGTAAAGTCTAAGCTTGC--GCCTCAAATGAGC-CAAATGTGGATTCTAGTAT
** * *
1482302 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAA-TCTCCTAATT-AGTATAAACGATA
386 TGATC-TCATTCATTTTGTGATTAGGCACTATAAACA-AATTCTCCTCTTTAAG-ATTAATGATA
* * *
1482365 CTTG-TGATAATT-TTTTACAGTG-AAATTT
448 -TTGATGAT-TTTCTTTTGCA-TGAAAATCT
* * * * *
1482393 TTTCTTTGCCCTATTTTCCTTAAATTCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTGG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * * * **
1482458 TAACGGTC-CTATTCTTTTCACGCTTAGGAACCAAAAACGCATTCCCTTCTTTAGGATATGTGAC
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
* * *
1482522 ATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-CCTATTTTTCATAGAATCAAAGTTTG
131 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTG
* * * * * *
1482586 TCTTTTAAATAAGGCAAAACAAGAATAGTCACACTAATCCCCATTCTTTTTGGGATTAGGCACCA
195 TCTCTTAAATAAGAC-AAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * * *
1482651 TAAACTTAGTCCTCTCATCAGGATACACGATATTGATG-TTCTGGTTTCGCAAGAAATGCTTTCT
259 TAAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTT-TGGTTTCGCAAGAAAGGCTTTCT
* * * * *
1482715 TCCCCCCAATTTTTATAATA-TCTAAGCTTGCGCTTCAAATGAGCCAAATGTAGATTCTAATATT
323 TCCCACCAATTTTTGTAA-AGTCTAAGCTTGCGCCTCAAATGAGCCAAATGTGGATTCTAGTATT
** * *
1482779 GATCTCAATTCATTTTGCCATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGGTTTTG
387 GATCTC-ATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATATTG
* *
1482844 ATGATTTTCTTTTACAGGAAAATCT
451 ATGATTTTCTTTTGCATGAAAATCT
* * *
1482869 TTTCTTTACCCTATGTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * * *
1482934 TAACAGCCTCCATTATTTTTAGGTTTGGGAATCTAAAACACATTCCCTTTGCTAGGATACACGAC
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
** * * * *
1482999 GGTGATGATTTGGTGTCGCAAGAAAAGCTTTTCATTGCACCGTTTTTGATAGAATCAAAGTTTGT
131 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
1483064 CTTTTAAATAAGACAAACATGAATGCTCATACTAATCCCCATTATTTTCGGGATTAGGCACCATA
196 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
* * ** * *
1483129 AACGTAGTCTTCCCTTAAGGATACACAATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCA
261 AACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * * * * * * * *
1483194 CACAAATTTTTGTAAAGTCTAGGCTCGTGCCTCAAAAGTGCCAAATGCGCATTCTAGTATTAATC
326 CACCAATTTTTGTAAAGTCTAAGCTTGCGCCTCAAATGAGCCAAATGTGGATTCTAGTATTGATC
* * *
1483259 TCCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAAGATTAATGATATTGATGA
391 T-CATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATATTGATGA
*
1483324 GTTTCTTTTGCATGAAAATCT
455 TTTTCTTTTGCATGAAAATCT
* * * ** *
1483345 TTTCTTTGCCTTATTTTCTTTAAAATCAATGTTTGA-CCTTTAAA-ATAGACATCCATCAATTCT
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTT-ATCCCTTAAATA-AGACAAGCATCGATTCT
* * * *
1483408 CGTAACAATCTCCATTCTTTTCAAGATTAGG-ATCCAAAAACACATTCCCTTCATTAGGATACAT
64 CGTAACAGTCTCCATTCTTTTCAGGATTGGGAAT-CAAAAACACATTCCCTTCGTTAGGATACAT
* * * *
1483472 GACTTTGATGCTTTGGTGCCACCAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTT
128 GACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
1483537 TGTCTCTTAAATACGACAAACATGAATACTTATACT-ATTCCCATTCTTTTCAGGATTAGGCACC
193 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * * *
1483601 ATAAACGTGGTCTTCTCATTAA-GATTCATGATATTGTTGCTTTGGTTTCGTAATAAAGGTTTTT
258 ATAAACGTAGTCTTCTCA-TAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * * **
1483665 TTCTCACCAATTATTGTAAAGTCTAAG-TT-CATGCCTGAAATGAGACAAACATGGATTCTAGTA
322 TTCCCACCAATTTTTGTAAAGTCTAAGCTTGC--GCCTCAAATGAGCCAAATGTGGATTCTAGTA
* * *
1483728 ATGATTTTCATTCATTTTGTGATTAGGCACTATAAACACAA-TC-CC-C--T-A-ATT-AGGATA
385 TTGA-TCTCATTCATTTTGTGATTAGGCACTATAAACA-AATTCTCCTCTTTAAGATTAATGATA
* ** *
1483785 --AATGA---T-AATT--ATG---AT-A
448 TTGATGATTTTCTTTTGCATGAAAATCT
* * *
1483801 TTTCTTTTCCCTATTTTCGTTAAAATCAAAGTTTATCCCTTAAATAAAGCCAAGCATCGATTCTC
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAAT-AAGACAAGCATCGATTCTC
* * *
1483866 GTAACAGTCTCCATTATTTTCTGGATTGGGAATCTAAAACACATTCCCTTCGTTAGGATACATGA
65 GTAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGA
* * * *
1483931 CAGTGAT-TTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTA
130 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * *
1483994 TCTCTTACATACGACAAACATGACTACTCATACTATTCCCCATTCTTTTCGGGATTAGGTACCAT
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCAT
* ** * * * * * *
1484059 AAACGTAGTCTTCTTATTTGGATACACGATATTGGTACATTGGTTTCGCAAGAAAGGATTTTTTC
260 AAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
* * * *
1484124 TCACC-ATTTATTGTAAAGTGTAAG-TT-CTTGCCTAAAATGAGACAAGCAT-T-GATTCTAGTA
325 CCACCAATTT-TTGTAAAGTCTAAGCTTGC--GCCTCAAATGAGCCAA--ATGTGGATTCTAGTA
* * * *
1484184 ATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACAA-TCT--AC--T-A-ATT-AGGATA
385 TTGATC-TCATTCATTTTGTGATTAGGCACTATAAACA-AATTCTCCTCTTTAAGATTAATGATA
* * *
1484241 --AATGA---T-ATTT--ATG---AT-A
448 TTGATGATTTTCTTTTGCATGAAAATCT
* * * * *
1484257 TTTCTTTGCCCTATTTTCCTTAAACTCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTTG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * *
1484322 TAATAGTC-CCATTCTTTTCATGATTGAGAACCAAAAACACATTCCCTTCCTTAGGATACGTGAC
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
* * * * * *
1484386 ATTGATACTTTGGTGTCACAAGAAAAGCTCTTCTTTCCACCATTTTTTATAGAACCAAAGTTT-C
131 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * *
1484450 CTCTTAAATAAGACAAACAAGAATAGTCACACTAATTCCCATTCTTTTTGGGATTAGACACCATA
196 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
* * *
1484515 AACTTAGTCTTCTCATAAGGATACATGATA-T--TG--TTGCTTT----------GC--T-TTGC
261 AACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * * ** * *
1484562 CA--TATTTTCGTAATA-TCTAAGTTTATGCCTCTAATCAGCCAAATGTGGATTCTAGTATTGAT
326 CACCAATTTTTGTAA-AGTCTAAGCTTGCGCCTCAAATGAGCCAAATGTGGATTCTAGTATTGAT
* * * * *
1484624 CTTAATTTATTTTGCCG-TTAGGCACTATAAACACATTCTCCTCTTTAAGATTAATGATTTTGAT
390 C-TCATTCATTTTG-TGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATATTGAT
* * *
1484688 GATTTTCCTTTGCTTGAAAATAT
453 GATTTTCTTTTGCATGAAAATCT
* * *
1484711 TTTCTTT-CCCTATTTTCCTTAAAATCAAAGTTTATCCCTCAAATAAGATAAGCATCGATTCTCG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * *
1484775 TAACAGTCTCCATTATTTTCAGGATTGGGAATCTAAAACATATTCCCTTCGTTAGGATAGATGAC
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
* ** * * *
1484840 AATGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGGATCAAAGTTTGT
131 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
1484905 GTCTTAAATAAGTCAAATATGAATACTCATAGTAATCCCCATTCTTTTCGGGATTAGGCACCATA
196 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
* * * * * *
1484970 AACGTATTCTTC-CTTTAAGGATACATGATACTGATGTTTTGGTTTTGCAAGAATGGCTTTCTTC
261 AACGTAGTCTTCTC-ATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
** * * * * *
1485034 CCATAAATTTTTGTAAAGTCT-AGGTTCGTGCCTCAAAAGTGCCAAATGTGGATTCTAGTATAGA
325 CCACCAATTTTTGTAAAGTCTAAGCTT-GCGCCTCAAATGAGCCAAATGTGGATTCTAGTATTGA
* * * * ** *
1485098 TCTCCATTCATTTTGTGATTAGGCACTATAAAGATATTCTCAT-TATTAGGAAAAAT-AGTAATG
389 TCT-CATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCT-TTAAGATTAATGA-TATTG
*
1485161 ATTATTTT-TTTTGCATGAAAATCT
451 ATGATTTTCTTTTGCATGAAAATCT
* * * * * *
1485185 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCATTAAA-ATTGCCAAGCATTGATTCTT
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATA-AGACAAGCATCGATTCTC
* * * * *
1485249 GTAACAATCTCCATTCTTTTCAAGATTGGGATTGAAAAACACATTCCCTTCATTAGGATACATGA
65 GTAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGA
* * ** ** *
1485314 CAGTAATGCTTTGGCATCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTA
130 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * *
1485379 TCTCTTAAATACGACAAACATGAATAGTCATACTCATACTATTCCCCATTCTTTTCAGGATTAGG
195 TCTCTTAAATAAGACAAACATG---A---ATACTCATACTAATCCCCATTCTTTTCGGGATTAGG
* * * * * * * *
1485444 CACCATAAGCATAGTCTTCTGATTAGGATACATGATATCGGTGCTTTGGCTTCGCCAGAAAGG-T
254 CACCATAAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * * **
1485508 TT-TTCCCACCAATTATTGTAGATTCTAAGTCCATT---CCTCAAATGAGACAGACATGGATTCT
319 TTCTTCCCACCAATTTTTGTAAAGTCTAAG--C-TTGCGCCTCAAATGAGCCAAATGTGGATTCT
* * * * ** * *
1485569 GGTAATCATCTTCATCCATTTTGTGATTAGGCACTATAAACACAA-TCTCCTAATTAGGATAAAT
381 AGTATTGATC-TCATTCATTTTGTGATTAGGCACTATAAACA-AATTCTCCTCTTTAAGATTAAT
* *** *
1485633 GATATTTATGACAAT-TTTTGTAGTG-AAATCT
444 GATATTGATGATTTTCTTTTGCA-TGAAAATCT
* * * *
1485664 TTTCTTTG---TATTTTCCTTAAATTCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * ** * * * *
1485726 TAAAAGTC-CCATTCATTTCTTGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACGTGAC
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
* * *
1485790 ATTGATACTTTGGTGTCATAAGAAAAGCTTTTCTTTCC-CCTGTTTTTGATAGAGTCAAAGTTTG
131 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTG
* * * *
1485854 TCTCCTAAATAAGACAAAACATGAATAGTCACACTAATCCCCATTCTTTTTGGGATTAGGCACCA
195 TCTCTTAAATAAGAC-AAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * * * * *
1485919 TAAACTTAGTCCTCTCATCAGGATACACGATATTGATGTTTTGGTTTTGCAAGAAATGCTTTCTT
259 TAAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * *
1485984 CCCTCCAATTTTTATAATA-TCTAAGTTTGTGCCTCAAATGAGCCAAATGTAGG-TTCTAGTATT
324 CCCACCAATTTTTGTAA-AGTCTAAGCTTGCGCCTCAAATGAGCCAAATGT-GGATTCTAGTATT
* * ** * * * *
1486047 GATCTTAATTCCTTTTGCCATTAGGCACTATAAACACATTATCCTCTTTAAGATTAATGGTTTTG
387 GATC-TCATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATATTG
*
1486112 ATGATTTTCTTTTGCAAGAAAATCT
451 ATGATTTTCTTTTGCATGAAAATCT
* *
1486137 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTTG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * ** *
1486202 TAACAGTCTCCATTATTTTCAGGATTGGGAATCTACAACACATTCCCTTCGTTAGGATACGCGAA
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
* * * * *
1486267 AGTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCACCATTTTTGGTAGAATCAAAGTTTGT
131 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* *
1486332 CTTTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATA
196 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
* * * * *
1486397 AACGTAGTCTTC-CTTTCAGCATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTC
261 AACGTAGTCTTCTC-ATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
** * * * * * * *
1486461 CCATAAATTTTTGTAAAGTCTAGGTTTGTGCCTCAAAAGTGCCGAATGTGGATTCTAGTATTAAT
325 CCACCAATTTTTGTAAAGTCTAAGCTTGCGCCTCAAATGAGCCAAATGTGGATTCTAGTATTGAT
* * * *
1486526 CTCCATTCATTTTGTAATTAGGCACTATAAACACATTCTCATCATTAAGATTAATGATATTGATG
390 CT-CATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATATTGATG
* *
1486591 ATTTTTTTTTTTGCATGGAAATCT
454 A--TTTTCTTTTGCATGAAAATCT
* * * **
1486615 TTTCCTCGCCATATTTTCTTTAAAATCAAAGTTTGA---C---AAT-AGACATCCATCGATTCTC
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTT-ATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
1486673 GTAACAATCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACACATTCCCTTCATTAGGATACATG
65 GTAACAGTCTCCATTCTTTTCAGGATTGGGAAT-CAAAAACACATTCCCTTCGTTAGGATACATG
* * * *
1486737 ACTTTGATGCTTTGGTGTCACAAGAAAAGCTTTTATTTCCATCGTTTTTGATATAATCAAAGTTT
129 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * **
1486802 GTCTCTTACATACGACAAACATGAATACTCATACTATTCCCCATTCTTTTCGGGATTAGGCATTA
194 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * * *
1486867 TAAACATAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGATTTTTT
259 TAAACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * * * * ** * *
1486932 CCCACTAGTTATTGTAAAGTCTAAG-TT-CATGCCTGAAATAAGACAAACATGGATTCTTGTAAT
324 CCCACCAATTTTTGTAAAGTCTAAGCTTGC--GCCTCAAATGAGCCAAATGTGGATTCTAGTATT
*
1486995 GATCTTCATTCATTTTGTG-TTAGGCACTATAAACACAA---T-CTC-TT-A-ATT-AGGATA--
387 GATC-TCATTCATTTTGTGATTAGGCACTATAAACA-AATTCTCCTCTTTAAGATTAATGATATT
* * *
1487049 AATGA---T-ATTT--ATG---AT-A
450 GATGATTTTCTTTTGCATGAAAATCT
* * * * * *
1487065 TTTCTTTGCCTTATTTTCCTTAAATTAAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCG
1 TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * * *
1487130 TAGCAGTC-CCACTCTTTTCATGATTGGGAACCAAAAATATATTCCCTTCTTTAAGG-TACGTGA
66 TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTT-AGGATACATGA
* *
1487193 CATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATAAAAGTTTG
130 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * *
1487258 TCCCTTAAATAAGACAAGCATGAATAATCATAATAGTCTCCATTCTTTTC
195 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC
1487308 AAGAATGGGT
Statistics
Matches: 4826, Mismatches: 858, Indels: 382
0.80 0.14 0.06
Matches are distributed among these distances:
433 2 0.00
434 2 0.00
435 66 0.01
436 8 0.00
437 5 0.00
438 1 0.00
439 1 0.00
440 2 0.00
441 3 0.00
442 4 0.00
444 4 0.00
447 1 0.00
448 3 0.00
449 1 0.00
450 35 0.01
451 2 0.00
452 2 0.00
453 60 0.01
454 166 0.03
455 419 0.09
456 344 0.07
457 78 0.02
458 6 0.00
460 9 0.00
462 6 0.00
463 1 0.00
464 5 0.00
465 3 0.00
466 5 0.00
467 2 0.00
468 7 0.00
469 6 0.00
470 84 0.02
471 25 0.01
472 394 0.08
473 40 0.01
474 261 0.05
475 1059 0.22
476 1200 0.25
477 240 0.05
478 55 0.01
479 116 0.02
480 10 0.00
481 81 0.02
483 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
TTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCG
TAACAGTCTCCATTCTTTTCAGGATTGGGAATCAAAAACACATTCCCTTCGTTAGGATACATGAC
ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATA
AACGTAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
CACCAATTTTTGTAAAGTCTAAGCTTGCGCCTCAAATGAGCCAAATGTGGATTCTAGTATTGATC
TCATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCTTTAAGATTAATGATATTGATGAT
TTTCTTTTGCATGAAAATCT
Found at i:1487855 original size:613 final size:613
Alignment explanation
Indices: 1486680--1487896 Score: 1769
Period size: 613 Copynumber: 2.0 Consensus size: 613
1486670 CTCGTAACAA
* *
1486680 TCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACTTTGAT
1 TCTCCATTCTTTTCAAGAATGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * *
1486745 GCTTTGGTGTCACAAGAAAAGCTTTTATTTCCATCGTTTTTGATATAATCAAAGTTTGTCTCTTA
66 GCCTCGGTATCACAACAAAAGCTTTTATTTCAACCGTTTTTGATATAATCAAAGTTTGTCACTTA
* * * * * **
1486810 CATACGACAAACATGAATACTCATACTATTCCCCATTCTTTTCGGGATTAGGCATTATAAACATA
131 AATAAGACAAACATAAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
1486875 GTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCGCAAGAAAGGATTTTTTCCCACTAG
196 GTCTTCCCATTAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGATTTTTT-CCACTAA
* * *
1486940 TTATTGTAAAGTCTAAGTTCATGCCTGAAATAAGACAAACATGGATTCTTGTAATGATCTTCATT
260 TTATTGAAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
1487005 CATTTTGTGTTAGGCACTATAAACACAATCTCTTAATTAGGATAAATGATATTTATGATATTTCT
325 CATTTTGTGTTAGGCACTATAAACACAATCTCCTAATTAGGATAAATGATATTTACGATATTTCT
* *
1487070 TTGCCTTATTTTCCTTAAATTAAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCGTAGCA
390 TTGCCTTATTTTCCTTAAATTAAAAGTTCAACCCTTAAATAAGATAAGCATCGATTCTCGTAACA
* *
1487135 GTCCCACTCTTTTCATGATTGGGAACCAAAAATATATTCCCTTCTTTAAGGTACGTGACATTGAT
455 GTCCCACTCTTTTCATGATTGGGAACCAAAAACATATTCCCTTCTTTAAGATACGTGACATTGAT
* * *
1487200 ACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATAAAAGTTTGTCCCTTA
520 ACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATAAAAGTTTGTCACTTA
*
1487265 AATAAGACAAGCATGAATAATCATAATAG
585 AATAAGACAAACATGAATAATCATAATAG
* *
1487294 TCTCCATTCTTTTCAAGAATGGGTTCCAAAAACACATTCCCTTCATTAGGATGCATGACATTGAT
1 TCTCCATTCTTTTCAAGAATGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*
1487359 GCCTCGGTATCTCAACAAAAGC-TTTACTTTCAACCGTTTTT-AGT-TGAATCAAAGTTTGTCAC
66 GCCTCGGTATCACAACAAAAGCTTTTA-TTTCAACCGTTTTTGA-TAT-AATCAAAGTTTGTCAC
*
1487421 TTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
128 TTAAATAAGACAAACATAAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * ***
1487486 ATAGTCTTCCCGTTAGAATGCGCGATATTGATGTTTTGGTTTCGCAAGAATGGCATTTTTT-TGT
193 ATAGTCTTCCCATTAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-ATTTTTTCCAC
* * ** *
1487550 TAATTTTTGAAAAGTCTAATTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
257 TAATTATTGAAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTC
* * * * ** **
1487615 ATTTATTTTGTGATTAGGCATTATAAGCACATTCTCCTCCTTAGTTTAAATGATATTTACGATA-
322 ATTCATTTTGTG-TTAGGCACTATAAACACAATCTCCTAATTAGGATAAATGATATTTACGATAT
1487679 TTCTTTGCCTTATTTTCCTTAAATTAAAAGTTCAACCCTTAAATAAGATAAGCATCGATTCTCGT
386 TTCTTTGCCTTATTTTCCTTAAATTAAAAGTTCAACCCTTAAATAAGATAAGCATCGATTCTCGT
*
1487744 AACAGTCCCACTCTTTTCATGATTGGGAACCAAAAACATATTCCCTTCTTTAAGATGCGTGACAT
451 AACAGTCCCACTCTTTTCATGATTGGGAACCAAAAACATATTCCCTTCTTTAAGATACGTGACAT
* * *
1487809 TGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGATAAAATCAAAGTTTGTTA
516 TGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATAAAAGTTTGTCA
*
1487874 CTTAAATAAGACAAACCTGAATA
581 CTTAAATAAGACAAACATGAATA
1487897 GCCATACTAA
Statistics
Matches: 534, Mismatches: 64, Indels: 11
0.88 0.11 0.02
Matches are distributed among these distances:
613 278 0.52
614 249 0.47
615 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (613 bp):
TCTCCATTCTTTTCAAGAATGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
GCCTCGGTATCACAACAAAAGCTTTTATTTCAACCGTTTTTGATATAATCAAAGTTTGTCACTTA
AATAAGACAAACATAAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
GTCTTCCCATTAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGATTTTTTCCACTAAT
TATTGAAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
ATTTTGTGTTAGGCACTATAAACACAATCTCCTAATTAGGATAAATGATATTTACGATATTTCTT
TGCCTTATTTTCCTTAAATTAAAAGTTCAACCCTTAAATAAGATAAGCATCGATTCTCGTAACAG
TCCCACTCTTTTCATGATTGGGAACCAAAAACATATTCCCTTCTTTAAGATACGTGACATTGATA
CTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATAAAAGTTTGTCACTTAA
ATAAGACAAACATGAATAATCATAATAG
Found at i:1488622 original size:474 final size:474
Alignment explanation
Indices: 1487679--1493667 Score: 6087
Period size: 474 Copynumber: 12.6 Consensus size: 474
1487669 ATTTACGATA
* * * * *
1487679 TTCTTTGCCTTATTTTCCTTAAATTAAAAGTTCAACCCTTAAATAAGATAAGCATCGATTCTCGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATCGATTCTCGT
* * * * * * *
1487744 AACAGTC-CCACTCTTTTCATGATTGGGAACCAAAAACATATTCCCTTCT-TTAAGATGCGTGAC
65 AACAATCTCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGAC
* * *
1487807 ATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGATAAAATCAAAGTTTGT
128 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * * **
1487872 -TACTTAAATAAGACAAACCTGAATAGC-CATACTAATCCCCATTATTTTCT-GGATAAGACATT
193 CT-CTTAAATAAGACAAACATGAATA-CTCATACTAATTCCCATTCTTTT-TGGGATTAGGCACC
* * * * * *
1487934 ATAAACATAGTCTTCTTATTAGGATAAACGATATTGATACTCTGGTTTTGCAAGAAAAGCTTTTT
255 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * ** * * *
1487999 TTCGCACCAATTTCTGTAAAATCTATGTTCGTTTCTCAAATGAGCCAAACAAGGATTCTAGTATT
320 TTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * * * *
1488064 GATCTTCATACCTATTGTGATTAGGCATTAAAAACGCATTCTCCTTATTAGGATAAACGATATTG
384 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
*
1488129 ATGATTTTCTTTAGCATGGAAATCTT
449 ATGATTTTCTTTTGCATGGAAATCTT
* *
1488155 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAAA-AAAACAAGCATTGATTCTCGTA
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAAATAAGACAAGCATCGATTCTCGTA
*
1488219 ACAGTCTCCATTCTTTCTAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACAT
66 ACAATCTCCATTCTTT-TAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACAT
* ** * * * * * * *
1488284 TGATTCTTCAGTGTCTCAA-TAAAGC-TTACTTTCCTGCCGTTTTTGGTGGAATCAAAGTTTGTC
130 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-ACCATTTTTGATAGAATCAAAGTTTGTC
* * * * * *
1488347 TCTTAAATAAGGCAAACATGAATAGTCATAATAATTCCTATTCTTTTTAGGATTAGGCACTATAA
194 TCTTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTTGGGATTAGGCACCATAA
* * * * * * *
1488412 ACATAGTCTTTTCATTAAGATACGCGATATTGATGTTTTGGCTTCACAAGAAAGGTATTTTTTTC
259 ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTTTTTC
* ** *
1488477 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAATTTGAATTCTAGTAATGATC
323 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * * * *
1488542 TTCATACATATTGTGATTAGGCATTATAAACACGTTCTACTTATTAGGATAAATGATATTGATGA
388 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
1488607 TTTTCTTTTGCATGGAAATCTT
453 TTTTCTTTTGCATGGAAATCTT
* * * *
1488629 TTCTTTGCCTTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAGATAAGCATCAATTCTCGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATCGATTCTCGT
* * ** **
1488694 AACAGTCTCTATTAATTTAAGGATTAAGAACCAAAAACACATT-CCTTTCATTAGGATACATGAC
65 AACAATCTCCATTCTTTTAA-GATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACATGAC
** * * * ** * * *
1488758 ATTGGGGCTGTGCTATTGCAAGAAAAGCTTTTCATTCCTCAATTTTTGATAGAATCAAAGTTTGT
128 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* *
1488823 CTCTTAAATAAGACAAATATGAATACTCATACTAA-TCTCCATTCTTTTTAGGATTAGGCACCAT
193 CTCTTAAATAAGACAAACATGAATACTCATACTAATTC-CCATTCTTTTTGGGATTAGGCACCAT
* * * * *
1488887 AAACATAGTCTTCTCATTAGGATACGCGATATCGATGTTTTGGTTTCGCAAGGAAGGCTTTTTTC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTT
* * * *
1488952 CCACTAATTTTTGTGAAGTCTAAATTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGAT
322 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * *
1489017 C-TCTATTCA-GTTGTGATGAGGCACTATAAATACATTCTCCTCATTAGAATAAATGATATTGCT
387 CTTC-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
1489080 GATTTTCTTTTGCATGGAAATCTTTT
451 GATTTTCTTTTGCATGGAAATC--TT
* * * *
1489106 TTTTTTGGCCCTATTTTCCATAAAATCAAAGTTTATCCCTTAAA-AAGACAAGCATCGATTCTCA
1 TTCTTT-GCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATCGATTCTCG
* * * * *
1489170 TACCAATCTCCTATTCCTTTCAAGATTGGGAACCAAAAACACATTCTCCTTAATAAGG-TACATT
64 TAACAATCTCC-ATT-CTTTTAAGATTGGGAACCAAAAACACATTC-CCTTTATTAGGATACATG
* * * * * *
1489234 AGATTGATGCTTTGATGTCACAAGAAAACCTTTTCTTTCCACTATTTTTGATGGATTCAAAGTTT
126 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * ** *** *
1489299 ATCTCTTAAATAAGACAAGCATGAATACTGATA-TTGTTCCCCATTCTTTTCAAGATTACGCACC
191 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATT-CCCATTCTTTTTGGGATTAGGCACC
* ** * * * * *
1489363 CTAAACGCAGTCTTCTTATTATGATACACGATATTGGTGCTTTAGTTTCGAAAGAAAGGC-TTTT
255 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * * *
1489427 TTCCTACCAATTATTGTAAAGTCTATGTTCGGGCCTCAAATGAGCCAAACATGGATTCTAGTATT
320 TTCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
1489492 GATTTTCATTCCTTTTGTGATTTGGCACTATAAACACATTCTCCTCATT----T-AATAATACTG
384 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * *
1489552 ATGATTTTCTTTTTCATAGAAATTTT
449 ATGATTTTCTTTTGCATGGAAATCTT
* * * * * * * * *
1489578 TTCTTTACTCTA-TTTCTTTATAATCAAAGTTCATCCCTTAAATAAGATAAGCTTTGATTATTGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATCGATTCTCGT
* * * * * *
1489642 AACAATCTCCATTTTTTTCAAGATTAGGACCCAAAAACACAAT-CCTTTCATTAAGATACGTGAC
65 AACAATCTCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACATGAC
* * *
1489706 ATTGATGCTGTGGTGTCACAAGAAAAGCTTTTCATTCCACCATTTTTGATAGAATCAAAGTTTTT
128 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * ** * *
1489771 CCCTTAAATAAGACAAACATTAATAGTCATACT-ATTCTCCATTCTTTTTAAGATTAGGGATCAT
193 CTCTTAAATAAGACAAACATGAATACTCATACTAATTC-CCATTCTTTTTGGGATTAGGCACCAT
* * * * * *
1489835 AAACAGAGTCTTCTCATTAGGATACCCGATATTGGTGCTTTGGTTTTGCATAAAAAGGCTTTTTC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA-AGAAAGGCTTTTTT
* **
1489900 TCCACCAATTTTTTTAAAGTCTAAGTTCGTTTCTCAAATGAGACAAACATGGATTCTAGTAATGA
321 TCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * * *
1489965 TTTTCATTCATTTTGTGATTAGGCACAATAAACATATTCTCC-CTGTTAGAATAAATGATGTTGA
386 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC-ATTAGGATAAATGATATTGA
* **
1490029 TGATTTTCTTTTGCGTGGAGTTCTT
450 TGATTTTCTTTTGCATGGAAATCTT
* ** * *
1490054 TTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCGTTTAAATAAGACAAGCATTGATTCTCGC
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTAAATAAGACAAGCATCGATTCTCGT
* * * * *
1490119 AACAATCTCCACTCTTTTTCTAGATTGGGATCCAAAAACACATTCCTTTTTTTAGGATACATGAC
65 AACAATCTCCATTC-TTTT-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGAC
* * ** * * *
1490184 ATTGATGCCTTGGCGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGGTAGTATCAAAGTTAGT
128 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * *
1490249 CTCTTAAATAAAACAAACAAGAATACTCATACT-ATTCCTCATTCTTTTCGGGATTAGGCACCAT
193 CTCTTAAATAAGACAAACATGAATACTCATACTAATTCC-CATTCTTTTTGGGATTAGGCACCAT
* * * * *
1490313 AATCGTAGTCTTCTC-TTAAGGATACAAGATATTGATGCTTTGGTTTAGCAAGAGAGGCTTTTTT
257 AAACATAGTCTTCTCATT-AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * * * ** *
1490377 TCTACAAATATTTGTAAAGTCTAGGTTCATGCCTCAAAATTGTAG---AATGTGGATTCTAGTAT
321 TCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC-AAA-TG-AGACAAACATGGATTCTAGTAA
* * * *
1490439 TGATCTCCATTCATTTTGTGATTAGGCACTATAAACACAATT-TTCTCATTAAGATTAATGATAT
383 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-ATTCTCCTCATTAGGATAAATGATAT
*
1490503 TGATGATTTTCTTTTGCATGAAAATCTT
447 TGATGATTTTCTTTTGCATGGAAATCTT
* * * *
1490531 TTCTTTGCCCTATTTTCATTAAAATAAAAGTTCATCCTTTAAA-ATAGACATGCATCGATTCTCG
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTAAATA-AGACAAGCATCGATTCTCG
* * * *
1490595 TAATAATCTCCATTCATTTCAAGATTGGGATCCAAAAACACATTCCCTTCT-TTAGTG-TAGATG
64 TAACAATCTCCATTC-TTTTAAGATTGGGAACCAAAAACACATTCCCTT-TATTAG-GATACATG
* * * *
1490658 AGATTGATGCTTTGGTGTTACAAGAAAAGCTTTTCTTTCCACCATTTTTCATCGAATCAAAGTTT
126 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * *
1490723 GTCTCTTAAATACGTCAAACATAAATACTCATACT-ATTCCCCATTCTTTTCGGGATTAGGGACC
191 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATT-CCCATTCTTTTTGGGATTAGGCACC
* * *
1490787 ATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAAGATTTTT
255 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * * * *
1490852 TTCCCATCAATTATTGTAAAGTTTAAGTTCATGCCTAAAATGAGACAAACATGGACTCTAGTAAT
320 TT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
1490917 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCTTAATTAGGATAAATG--A---
384 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
*
1490977 A--A------TTT--AT-G--AT-AT
449 ATGATTTTCTTTTGCATGGAAATCTT
* * * * **
1490989 TTCTTTGCCCTATTTTCCTTAAATTCAAAGTTCATCTCTTAAACAAGATAAGCATTAATTCTCGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTAAATAAGACAAGCATCGATTCTCGT
* * * * * *
1491054 AACAGTC-CCACTCTTTTCATGATTGGGAACCAAAAACATATTCCCTTTTTTAGGATACGTGACA
65 AACAATCTCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACA
* * *
1491118 TTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTTCC-CCGTTTTTGATAGAATCAAAGTTTGC
129 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTC-TTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * *
1491182 CT-TATAAATAAGACAAATAAT-AATAGTCACACTAATCCCCATTCTTTTTGGGATTAGGCACCG
193 CTCT-TAAATAAGACAAA-CATGAATACTCATACTAATTCCCATTCTTTTTGGGATTAGGCACCA
* * * * * * * * *
1491245 CAAACTTAGTCTTCTCATAAGGATAAACAATATTGATGCTTTGGTTTCGTAAAAAACGC-TTTCT
256 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * * * *
1491309 TCCCCCTAACTTTTGTAATA-TCTAAGTTCATGCCTCAAATGAGCCAAATATGGATTCTAGTATT
321 TCCACC-AATTTTTGTAA-AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
1491373 GATC-TCAATTCATTTTG-GCATTAGGCACTATAAACGCATTCTCCTCATTAAGACT-AACGATA
384 GATCTTC-ATTCATTTTGTG-ATTAGGCACTATAAACACATTCTCCTCATTAGGA-TAAATGATA
1491435 TTGATGATTTTCTTTTGCATGGAAATCTT
446 TTGATGATTTTCTTTTGCATGGAAATCTT
* * * * * * *
1491464 TTCTTCGCCCTATTTTCTTTACAATCAAAGTTCGTCCTTTGAAAT-AGACATGCATCGATTCTCA
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CT-AAATAAGACAAGCATCGATTCTCG
* * *
1491528 TAA-AATCATCC-TTTTTTTCAAGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGA
64 TAACAATC-TCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGA
* * * * *
1491591 CATTGATGCTTTGGTGTGACAAGAAAAGCTTTT-TCTCTACCACTTTTGATAGAATCAAAATTTG
127 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * *
1491655 TCTCTTAAATACGACAAGCTTGAATACTCAAACT-ATTCCCATTCTTTTCGGGATTAGGCACCAT
192 TCTCTTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTTGGGATTAGGCACCAT
* * * * *
1491719 AAACATAGTCTTTTCATTAGGATACATGATA-TCAGTGCTTTGGTTTCACAAGAACA-GCTTTTC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTGGTTTCGCAAGAA-AGGCTTTTT
** * * * * *
1491782 CCCCCCCAA-TTATGTAAAGTCTAAGTACCTGCCTCAAATGAGACAAACATGGATTCTAGAAATG
320 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * *
1491846 CTCTTCATTCATTTTTGTGATTAGGCACTATAAACACAATCTCCTAATTAGGAGAAATGATATTT
385 ATCTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
**
1491911 ATGATATTT-TTTTGCAACGAAATCTT
449 ATGAT-TTTCTTTTGCATGGAAATCTT
* * * *
1491937 TTCTTTGCCCTATTTTCCTTAAATTCAAAATTTATCCTTTAAATAAGACAAGCATCGATTCTCGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTAAATAAGACAAGCATCGATTCTCGT
* * * * * * * *
1492002 AATAGTC-CCATTTTTTTCATGATTAGGAACCGAAAACACATTCCCTTCATTAGGATACGTGACA
65 AACAATCTCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACA
* * * *
1492066 TTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-CCTGTTTTTGATAAAATCAAAGTTTGC
129 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGT
* * *
1492130 CTCTTAAATAAGACAAACAAGAATAGTCACACTAA-TCCTCATTCTTTTTGGGATTAGGCACCAT
193 CTCTTAAATAAGACAAACATGAATACTCATACTAATTCC-CATTCTTTTTGGGATTAGGCACCAT
* * * * * * * *
1492194 AAACTTAGTCTTTTCATAAGGATACATGATATTGATGCTTTGGCTTCGCAAGAAACGC-TCTTTC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTT
* * * * ** * *
1492258 CCCCCAATTTTGGTAATA-TCTAAGTTCGCGCCTCAAATGAGCCAAATGTTGATTCTAGTATTGA
322 CCACCAATTTTTGTAA-AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * * *
1492322 GC-TCAATTCATTTTGCT-ATTAGGCACTAGAAACACATTCTCCTCTTTAAGATTAATGATTTTG
386 TCTTC-ATTCATTTTG-TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
*
1492385 ATGATTTTCTTTTGCATGAAAATCTT
449 ATGATTTTCTTTTGCATGGAAATCTT
* * * *
1492411 TTCTTTACCCTATTTTCTTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATTGATTCTCGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATCGATTCTCGT
* * * * ** * ** *
1492476 AACAATCTCCATTCTTTTTAGGATTGGGAATCTAAAACACATTCCCATCGTTGGGATACACAATA
65 AACAATCTCCATTC-TTTTAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACA
* ** * * *
1492541 GTGATGCTTTGGTGTTGCAAGAAAAGCTTTTC-TTCCACCGTTTTTCATAGAATCAAAGTTTGCC
129 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
* * * *
1492605 ACTTAAACAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAA
194 TCTTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTTGGGATTAGGCACCATAA
* * * * * * * *
1492670 ACGTAGTCTTC-CCTTAAGGATACATGATACTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCC
259 ACATAGTCTTCTCATT-AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTC
* * * * * * * ** * *
1492734 CACAAATTTTTGCAAAGTCTAGGTTCGTGCCTTAAAAGTGCCAAATGTAGATTCTAGTATTGATC
323 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * * *
1492799 TCCAATCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATTAATGATATTGATGA
388 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* *
1492864 TTTTCTTTTGCACGAAAATCTT
453 TTTTCTTTTGCATGGAAATCTT
* * * ** *
1492886 TTCTTTGCGCTATTTT--TGTAAAATCAATGTTCGTTCTTTAAA-ATTGACAAGCATCGATTCTC
1 TTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTC-ATCCCTAAATA-AGACAAGCATCGATTCTC
* * * *
1492948 GTAATAATCTCTATTCTTTTCAAGATTGGGATCCAAAAACACATTTCCTTTATTAGGATACATGA
63 GTAACAATCTCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGA
* *
1493013 CATTGATGCTTTGGTGTCACAA-AAAAGCTTTTC-TTCCTACCGTTTTTGACAGAATCAAAGTTT
127 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-ACCATTTTTGATAGAATCAAAGTTT
* * * *
1493076 GTCAT-TTAAATATGACAAACATGAATACTCATACT-ATTCCCCATTCTTTTCGGGAATAGGCGC
191 GTC-TCTTAAATAAGACAAACATGAATACTCATACTAATT-CCCATTCTTTTTGGGATTAGGCAC
* * * * *
1493139 CATAAACATAGTCTTCTCTTTAGGATACATGATATCGGTGCTTTGGTTTCGCAAGAAAGGATTTT
254 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* * * *
1493204 TTTCCACCAATTATTGTAAAGTCTAAGTTCATGCTTCAAATAAGACAAACATGGATTCTAGTAAT
319 TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
1493269 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACAATCTCCTAATTAGGATAAATGATATTT
384 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
*
1493334 ATGATTTTCTTTTGC-CGAGAAATCTT
449 ATGATTTTCTTTTGCATG-GAAATCTT
* * * * *
1493360 TTCTTTGCCCTATTTTTCTTAAATTCAAA-ATCATCCCTCAAATAAGACAAGCATTGATTCTTGT
1 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT-AAATAAGACAAGCATCGATTCTCGT
* * * * * * *
1493424 AATAGTC-CCATTCTTTTCATGATTAGGAACTAAAAACACATTCCCTTTTTTAGGATACGTGACA
65 AACAATCTCCATTCTTTT-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACA
** * * *
1493488 TTGACACTTTGGTGTCACAAGAAAAGCTTTTCTTTCTC-CCGTTTTTGATAGAATCAAAGCTTGC
129 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC-CACCATTTTTGATAGAATCAAAGTTTGT
* * * *
1493552 CTCTTAAATAAGACAAACAAGAATAGTCACACTAATCCCCATTCTTTTTGGGATTAGGCACCATA
193 CTCTTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTTGGGATTAGGCACCATA
* * * * *
1493617 AACTTAGTCTTCTTATAAGGATACATGATATTGACGCTTTGGTTTCGCAAG
258 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1493668 GCAGGTTCTT
Statistics
Matches: 4581, Mismatches: 777, Indels: 312
0.81 0.14 0.06
Matches are distributed among these distances:
455 6 0.00
456 104 0.02
457 190 0.04
458 70 0.02
459 4 0.00
461 1 0.00
462 2 0.00
463 1 0.00
464 3 0.00
468 4 0.00
469 11 0.00
470 205 0.04
471 133 0.03
472 77 0.02
473 382 0.08
474 1256 0.27
475 649 0.14
476 443 0.10
477 518 0.11
478 466 0.10
479 50 0.01
480 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAAATAAGACAAGCATCGATTCTCGTA
ACAATCTCCATTCTTTTAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATT
GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
TTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTTGGGATTAGGCACCATAAAC
ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCAC
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
TCTTTTGCATGGAAATCTT
Found at i:1496299 original size:159 final size:156
Alignment explanation
Indices: 1495660--1496431 Score: 433
Period size: 159 Copynumber: 4.9 Consensus size: 156
1495650 GTATCAATCT
* * * *
1495660 CCATTCTTTCCAAGATTGGGATCCAAAAACACATTCCCTTCACTAGGATACATGACATTAATGCT
1 CCATTCTTT-TAAGATTGGGA-CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
* * *
1495725 TTGGGGTCGCAAGAAAAGCTTTTTTTTCACCATTTTCGATAGAATCAAAGTTTGTCTCTCAAATA
64 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACCATTTTCGATAGAATCAAAGTTCGTCTCTCAAATA
1495790 AGACAAACATGAATACTCATACTATTCC
129 AGACAAACATGAATACTCATACTATTCC
* * * * * * ** * ***
1495818 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCATCA-GAGTACCCGATATTGGCAC
1 CCATTCTTTT-AAGATT-GGGACCAAAAACACATTCCTTTCATTAGGA-TACATGACATTGATGC
* * ** *
1495882 TTTGGTTTCGCAA-AAAAGGCTTTTTTTCTATAATTTT-G-TA-AAGTCTAAGTTCGTGC-CTCA
63 TTTGGTGTCGCAAGAAAA-GCTTTTTTTCCACCATTTTCGATAGAA-TCAAAGTTCGT-CTCTCA
* * * * * *
1495942 CATAAGACAAACATGGATTCTTATAATGATTTTCA
125 AATAAGACAAACATGAATACTCATACT-A--TTCC
* * * * * * * * *
1495977 TCATT-TTTT-A-ATTGGGCACTATAAACACATT-CTCCTCGTTGGGATAAATGATATTGATGAT
1 CCATTCTTTTAAGATTGGG-ACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGATGCT
** * * * * ** * ** * * * * * *
1496038 TTTCTTTTGGATGAAAATATTTTCTTTGCC-CAATTTTCCTTAAAATCAAACTCCATCCCTTAAA
64 TTGGTGTCGCAAGAAAAGCTTTT-TTT-CCACCATTTTCGATAGAATCAAAGTTCGTCTCTCAAA
* * * * *
1496102 TAAGACAAGCATCAATTCTCATAAC-AATCT
127 TAAGACAAACATGAATACTCAT-ACTATTCC
*
1496132 CCACTCTTTCTAAGATTGGGATCCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTT-TAAGATTGGGA-CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
* * * * * *
1496197 TTGATGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAACCAAAGTTTGTCTCTTAAAT
64 TTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCATTTTCGATAGAATCAAAGTTCGTCTCTCAAAT
1496262 AAGACAAACATGAATACTCATACTATTCC
128 AAGACAAACATGAATACTCATACTATTCC
* * * * * * ** * *
1496291 CCATTCTTTTCAAGGTTAGGCACCATAAACATAGT-CTTCTCATTCGGATACCCGATATTGGTGC
1 CCATTCTTTT-AAGATT-GGGACCAAAAACACATTCCTT-TCATTAGGATACATGACATTGATGC
* * * * * * *
1496355 TTTGGTTTCGCAAGAAAGGCTCTTTTCCCACTAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCA
63 TTTGGTGTCGCAAGAAAAGCTTTTTTTCCAC-CATTTTCGATAGAA-TCAAAGTTCGT-CTCTCA
*
1496417 AATGAGACAAACATG
125 AATAAGACAAACATG
1496432 GATTCTAGTA
Statistics
Matches: 453, Mismatches: 127, Indels: 68
0.70 0.20 0.10
Matches are distributed among these distances:
154 3 0.01
155 45 0.10
156 56 0.12
157 15 0.03
158 144 0.32
159 185 0.41
160 5 0.01
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (156 bp):
CCATTCTTTTAAGATTGGGACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAAGCTTTTTTTCCACCATTTTCGATAGAATCAAAGTTCGTCTCTCAAATAAG
ACAAACATGAATACTCATACTATTCC
Found at i:1497195 original size:475 final size:473
Alignment explanation
Indices: 1494492--1497334 Score: 3068
Period size: 475 Copynumber: 6.0 Consensus size: 473
1494482 ATAGTGACAG
* * * ** *
1494492 TTTTTGTAATA-TCTAAGTTTGTGCCTAAAATGAGCCAAATGTGGATTCTAGTATTGATCTTAAT
1 TTTTTGTAA-AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCAT
** * * * *
1494556 TCATTTTGCCATTAGGCACTATAAACACATTCTCCTCCTTAAGATTAATGATTTTGATGATTTAC
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA-TAATGATATTGATGATTTTC
* ** *
1494621 TTTTGCATGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCAAAGTTCATCTATTAAATAAAA
129 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * * * * * * ** * *
1494686 CGAGTACCAATTCTCATAACAGT-ACCA-TATTTTCATGATTTAGAACCAAAAACATATTCCCTT
193 CAAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCC-AAAACACATTCCCTT
* * * * * * * * **
1494749 CAATAGGATATATGACATTAATGCTTTAGAGTTGTAGGAAAAGCTTTTCTTTCCACTGTTTTTGA
257 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * *
1494814 TAGAATCAAAGTTTGCCCCTTAAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTT
322 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
** ** * * * * *
1494879 GGGATTACACAACATAAACGTAGTCTTCTAATAAGGATATATGATATTGATGCTTTAGTTTCGCA
387 AAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGCA
*
1494944 AGAAAGGCTTTCTTCCCACCAA
452 AGAAAGGCTTTTTTCCCACCAA
* * * * *
1494966 TTTTTGTAAAGTCTAAGTTCATGCCTTAAAAGAGCCAAACATGGATTCTAGTATTGATCTTTATT
1 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCATT
* * * *
1495031 CGTTTTGTGATTAGGCACTATAAACATATTCTCCTCAATGGGATAAATGATATTGATGATTTTCT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT-AATGATATTGATGATTTTCT
* * ** *
1495096 TTTGTATGAAAATCTTTTCTTTGCCCTATTTTCATTCAAATCAAAGTTTGTCCTTTAAATAAGAC
130 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGAC
* *
1495161 AAGCATCGATTCTCGAAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAA-ATGCATTCCCAT
194 AAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAACA--CATTCCCTT
* * * **
1495225 CGTTAGGATATATGACATTGATGCTTTGGTGTCGCAAGACAAGCTTTTGATTCCACCATTTTTGA
257 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * * * *
1495290 AAGAATAAAAGTTTGTCTCTTAAATAATACAAACATAAATAGTCA-AGCTAATCCCCATTCATTT
322 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATA-CTAATCCCCATTC-TTT
* * * ** * * * *
1495354 T-GAGATTAGGCACCAAAAACAAAGTCTTCTCTTAAGGATAAACGACATTGATGTTTTGGTTTTG
385 TCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCG
* *
1495418 CAAGAAAGGCTTTCTTCCCCCCAA
450 CAAGAAAGGCTTTTTTCCCACCAA
* * * * * ** * * *
1495442 TTTTT-TCGAAGTCTAAGTTCATGCATAAAATGAGCCAAATGTGGATTTTGGTATTGATCTCCAT
1 TTTTTGT-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCAT
* * *
1495506 TCATTTTGTGATTAAGG-ACTACAAACACATTCTCCTC-TTCAAGATTAATGATATTGGTGATTT
65 TCATTTTGTGATT-AGGCACTATAAACACATTCTCCTCATT-AGGA-TAATGATATTGATGATTT
*
1495569 TCTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCTTTAAAATCAAAGTTCATCTCTTAAATAA
127 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
1495633 GGCAAGCATCGA-TCATCGTATCAATCTCCATTCTTTCCAAGATTGGGATCCAAAAACACATTCC
191 GACAAGCATCGATTC-TCGTAACAATCTCCACTCTTTTCAAGATTGGGATCC-AAAACACATTCC
* * * *
1495697 CTTCACTAGGATACATGACATTAATGCTTTGGGGTCGCAAGAAAAGCTTTT-TTTTCACCATTTT
254 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * * *
1495761 CGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTT
319 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * * ***
1495826 TTCAAGATTAGGCACCATAAACATAGTCTTTTCATCA-GAGTACCCGATATTGGCACTTTGGTTT
384 TTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGA-TACACGATATTGATGCTTTGGTTT
* * * *
1495890 CGCAAAAAAGGCTTTTTTTCTA-TAA
448 CGCAAGAAAGGCTTTTTTCCCACCAA
* * * *
1495915 -TTTTGTAAAGTCTAAGTTCGTGCCTCACATAAGACAAACATGGATTCTTA-TAATGATTTTCA-
1 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTATTGATCTTCAT
* * * * *
1495977 TCATTTTTTAATTGGGCACTATAAACACATTCTCCTCGTTGGGATAAATGATATTGATGATTTTC
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT-AATGATATTGATGATTTTC
* * * * *
1496042 TTTTGGATGAAAATATTTTCTTTGCCCAATTTTCCTTAAAATCAAACTCCATCCCTTAAATAAGA
129 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * *
1496107 CAAGCATCAATTCTCATAACAATCTCCACTC-TTTCTAAGATTGGGATCCAAAAACACATTCCTT
193 CAAGCATCGATTCTCGTAACAATCTCCACTCTTTTC-AAGATTGGGATCC-AAAACACATTCCCT
* *
1496171 TCATTAGGATACATGACATTGATGCTTTGATGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTG
256 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * *
1496236 ATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTT
321 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * ** * *
1496301 CAAGGTTAGGCACCATAAACATAGTCTTCTCATTCGGATACCCGATATTGGTGCTTTGGTTTCGC
386 CAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGC
* *
1496366 AAGAAAGGCTCTTTTCCCACTAA
451 AAGAAAGGCTTTTTTCCCACCAA
* *
1496389 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTCCGTT
1 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCATT
* * * *
1496454 CATTTTGTGATTAGGCATTATAAACACATTCTTCTCATTAAGATTAATGATCTTGATGATTTTTT
66 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA-TAATGATATTGATGA--TTTT
* * *
1496519 TTTTTGCATGAAAATCGTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAG
128 CTTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * * *
1496584 TCAAGCATCGATTCTCGTAATAGTC-CCACTCTTTTGAAGATTAGGAACCAAAAGCACATTCCCT
192 ACAAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAA-CACATTCCCT
* * * * ** * *
1496648 TCAATAGGATACAAGACATTGATGCATTGGTTTCAAAAGAAAAGCTTTTTTTTCCACCGTTTTTG
256 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * * *
1496713 ATAGAATCAATGTCTGCCTCTTAAATAAGCCAAACATGCATAGTCGTACTAGTCCCTATTCTTTT
321 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * *
1496778 CGAGAATAAGCACCATAAACGTAGTCTTCTAATAAGGATACACGATATCGATGCTTTGATTTCGC
386 CAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGC
* *
1496843 AAGAAAGGCTTTTTTTCTCACAAA
451 AAGAAAGGC-TTTTTTCCCACCAA
* * *
1496867 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATT-TTCTTTAT
1 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-ATTGATCTTCAT
* * ** * * *
1496931 TCTTTTTGAGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAGTGCTGTTGATTATTTTC
65 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA-TGATATTGATGATTTTC
* * * * * * * *
1496996 TTTTGCGTGAAAGTCTTTTGTTTGCCTTGTTTTCCTAAAATCAATGTTCATCCCTTAAATAAAAC
129 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * ** * * * *
1497061 AAGCATCGATTCTCGTAACAGTC-CAATTCTTTTTAGGATTGGGCGCCTAAAACATAGTCTCTTT
194 AAGCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCC-AAAACACATTCCCTTC
* * ** * * * *
1497125 ATTCGAATACACAAGATTGTTGCTTTAGTGTCGCAAGAAAAGCTTTCCTTTCCA-CAGTTTTTGA
258 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGA
* *
1497189 TAGAATCAAAGTTTGCCTCCTAAATAAGACAAACATGAATAGTCATA-TAAATCCCTATTCTTTT
322 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTT
* *
1497253 CAAGATTAGGCACCATAAACCTAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTGGC
386 CAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGC
* *
1497318 AAGAAAGGATTTCTTCC
451 AAGAAAGGCTTTTTTCC
1497335 TGAAAGCTCA
Statistics
Matches: 1993, Mismatches: 331, Indels: 90
0.83 0.14 0.04
Matches are distributed among these distances:
470 3 0.00
471 70 0.04
472 179 0.09
473 162 0.08
474 323 0.16
475 440 0.22
476 404 0.20
477 212 0.11
478 193 0.10
479 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCATT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATGATATTGATGATTTTCTT
TTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
GCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGATCCAAAACACATTCCCTTCATT
AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
ATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGA
TTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAA
AGGCTTTTTTCCCACCAA
Found at i:1498805 original size:22 final size:22
Alignment explanation
Indices: 1498778--1498829 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
1498768 TAATCGGTTA
1498778 AAAAGATTTTCTCCCCCATGAT
1 AAAAGATTTTCTCCCCCATGAT
* *
1498800 AAAAGATTTTCTCCCGCTTGAT
1 AAAAGATTTTCTCCCCCATGAT
1498822 AAAA-ATTT
1 AAAAGATTT
1498830 ATTTTCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (22 bp):
AAAAGATTTTCTCCCCCATGAT
Found at i:1500707 original size:41 final size:41
Alignment explanation
Indices: 1500650--1500758 Score: 209
Period size: 41 Copynumber: 2.7 Consensus size: 41
1500640 ACCCTTGTAT
1500650 CGATGCAAAGAATATTGTATCGATACAATGTATCGATGCAA
1 CGATGCAAAGAATATTGTATCGATACAATGTATCGATGCAA
1500691 CGATGCAAAGAATATTGTATCGATACAATGTATCGATGCAA
1 CGATGCAAAGAATATTGTATCGATACAATGTATCGATGCAA
*
1500732 TGATGCAAAGAATATTGTATCGATACA
1 CGATGCAAAGAATATTGTATCGATACA
1500759 TCTGTGTTTT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (41 bp):
CGATGCAAAGAATATTGTATCGATACAATGTATCGATGCAA
Found at i:1507010 original size:19 final size:20
Alignment explanation
Indices: 1506966--1507013 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1506956 TTGCTAGTTT
* **
1506966 CATGTATCGATACAATTGTC
1 CATGTATCGAAACAATTGAA
1506986 CATGTATCGAAACAA-TGAA
1 CATGTATCGAAACAATTGAA
1507005 CATGTATCG
1 CATGTATCG
1507014 TTACAAAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (20 bp):
CATGTATCGAAACAATTGAA
Found at i:1507019 original size:19 final size:20
Alignment explanation
Indices: 1506966--1507019 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
1506956 TTGCTAGTTT
**
1506966 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
1506986 CATGTATCGAAACAA-TGAA
1 CATGTATCGATACAATTGAA
*
1507005 CATGTATCGTTACAA
1 CATGTATCGATACAA
1507020 AGCATAATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1508282 original size:475 final size:476
Alignment explanation
Indices: 1507328--1511075 Score: 3800
Period size: 475 Copynumber: 7.9 Consensus size: 476
1507318 ATCCTAACAC
* * *
1507328 TTCCCACCAATTTTTGTAAAGTGTAAGTTCGTGCATCAAATA-AG-CTAAACATGGATTCTAG-A
1 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA-AGAGAC-AAACATGGATTCTAGTA
* * *
1507390 ACTGATCTTTATTCATTTTGTGATTAGACAGTATAAACACATTCTCCTCATTAGGATAAATGATA
64 A-TGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * ** *
1507455 TTAATGATTTTCTTTTGCAT-AGAAATATTTTCTTTGCCCTTATTTT-CATAAAAGTGGAAGTTA
128 TTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCC-TATTTTCCTTAAAA-TCAAAGTTC
* * * * *
1507518 ATCCCCTAAATAACACAGGCATTGATTCTCATAACTGTC-CCAATTCTTTTCAAGATTGGGATCC
190 ATCCCCTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC-ATTCTTTTCAAGATTAGGATCC
* * * * *
1507582 AAAAACACATTCCATTCATTAGGATAAATGGCATTGATGTTTTGGTGTCGCAAGAAAAGCTTTTC
254 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTC
* * * * * *
1507647 TTTTCACAATTTTTTATAGAATCAAAGTTTGTCTCTTATATAAAACCAACATGAATACTCATACT
319 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * **
1507712 ATTCCCCAATCTTTTCCGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTG
384 AATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTG
* * * *
1507777 GTGCTTTGGTTTCACGAGAAAAGCTTTT
449 ATGCTTTGGTTTCGCAAGAAAAGATTTT
* * * *
1507805 TTCCCACCAATTATTGTAAAGTCTAAGTTCATGCCTCAAAAGAGCCAAACATGGATTCTAGCACT
1 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAAT
* * * *
1507870 AATTTTCATTCATTTTGTGATTAGGCATTATAAAGAAATTCTCCTCATTAGGATAAATGATATTG
66 GATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * * *
1507935 ATTATTTTCTTTTGCATGAAAATTTTTTCTCTGCTCTATTTATCC-TAAAATCAAAATTCATCCC
131 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT-TCCTTAAAATCAAAGTTCATCCC
* ** * *
1507999 TTAAA-AAGACAAGCATCGATTCTGGTAACAGTCTCCATTCTTTTCAAGAATAGGATCCAAAAAT
195 CTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAAC
* * * * *
1508063 GCATTCCCTTCATTAGGATATATGACATTGATGCTTTGCTGTTGCAAGAAACGCTTTTCTGTCCA
260 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
1508128 TCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAGTATTCCC
325 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * * *
1508193 CATT-TTTTTTGGATTAGGCACCATAAATATAGTCTTCTCATTAAGATACACGATATTGGTACTT
390 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTT
*
1508257 TGGTTTCACAAGAAAAGATTTTT
455 TGGTTTCGCAAGAAAAGA-TTTT
* * * * ** * *
1508280 TTCCCACTAATTATTGTAAATTCTAAGTTCATGCCTCAAATGAGATGAA-ATAGATTTTAGTAAT
1 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAAT
* *
1508344 GATCTTCATTCATTTTGTAATTAGAC-TCTATAAACACATTCTCCAT-ATTAGGATAAATGATAT
66 GATCTTCATTCATTTTGTGATTAGGCAT-TATAAACACATTCTCC-TCATTAGGATAAATGATAT
* * * * *
1508407 TTATGATTTTTTTTTGCA-GCGAAATCTTTTCTTTGCCCTATTTTCCTTAAATTCAAAGTTTATC
129 TGATGATTTTCTTTTGCATG-AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * *
1508471 TCCTAAATAAGACAATCATCGATTCTCATAACAG-CCCCATTCTTTTTATGATTAGGAACCAAAA
193 CCCTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAA
* * *
1508535 ACACATTCCCTTCAATAGGATACATGACATTAATGCTTTAG-TGTTGC-AGAAAAAGCTTTTCTT
258 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GCTGTCGCAAG-AAAAGCTTTTCTT
* * * *
1508598 TCCACCATTTTTTATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATAGTGATACTAA
321 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
* ** * * * * *
1508663 TCCCCATTCTTTTTGGGATTACACAACATAGACGTAGTCTTCT-AATAAGGATGCAC-ACTATTG
386 TCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAA-GATACACGA-TATTG
* * *
1508726 ATGCTTTGGTTTCGCAAGAAAGGCTTTC
449 ATGCTTTGGTTTCGCAAGAAAAGATTTT
* * **
1508754 TTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAAAGAGCCAAACATGGATTCTAGTGTT
1 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAAT
* * * *
1508819 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTGCTCGTTGGGATAAATGATATTG
66 GATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * *
1508884 ATAATTTTCTTTTGCATG-AAATCTTTTCCTTGCCCTATTTTCCCTAAAATCAAAGTTCATCCCT
131 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCC
* * * * * * ** * * *
1508948 TAAAAAAGGCAAGCTTCAATTCTCATAACGGTCTCCATTATTTTCATTATTGGGATCTAAAATCA
196 TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAACA
** * * * * * * *
1509013 CATTTTCTTGACTAGGATACATGACATTAATACTTTGCTATCGCAAGAAATGCTTTTCCTTCCAC
261 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * * *
1509078 CGTGTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAATATGAATGCTCATACTATTCCCC
326 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * *
1509143 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTATGATACGCGATATTGATGTTTT
391 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTT
* * * *
1509208 AGTTTCGTAGGAAAGGCA-TTT
456 GGTTTCGCAAGAAAAG-ATTTT
** * *
1509229 TTCCC-CCTAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCCA-TAA
1 TTCCCACC-AATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGT-A
* * * * * * *
1509292 ATTATCTTCATTCATTTTGTGATTAAGAACTATAAGCACATTTTCCTTATTAGGATAAATGATAT
64 ATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * *
1509357 TGATGATTTTCTTTTACATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCC
129 TGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* ** * *
1509422 CCTAAGTAAGACAAGCATCGATTCTTGTAACAGTCTCAATTATTTTCATA-ATTAGGAAT--ATA
194 CCTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCA-AGATTAGG-ATCCA-A
* * * * * * * *
1509484 AAATAGATTCCCTTCATT-TGATACATGACTTTTG-TGCTTTGTTGTCGCCAGACAAGCTTTTTT
256 AAACACATTCCCTTCATTAGGATACATGAC-ATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCT
* * * * * * * *
1509547 TTCCACCACTTTTGGTAGTATCAAAGTTAGTCTCTTAAATAAGATAAACAAGGATACTCATAATA
320 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * * *
1509612 ATCCCCATTCTTTTCAAGG-TTAGGCACCATAAACGTAGTCTTTTCATTAGGATACATGATATTG
385 ATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTG
* * * *
1509676 TTGTTTTGATTTTGCAAGAAAAGCA-TTT
449 ATGCTTTGGTTTCGCAAGAAAAG-ATTTT
* * *
1509704 TTCCCACC-ATTTTTGTAAAGTATAAGTGT-GTGCCTCAAATGAGACAAACATGGATTCTAGTAA
1 TTCCCACCAATTTTTGTAAAGTCTAAGT-TCATGCCTCAAAAGAGACAAACATGGATTCTAGTAA
* * * *
1509767 TGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTTGGATAAATGATATT
65 TGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATATT
** * * ** *
1509832 GATGATTTTCAATTACATGAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCGTAGTT-ATCGC
130 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* *
1509896 TTAAATAAGAAAAGCATCGATTCTCATAACA------A------TC----------T-C---AAC
195 CTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAAC
* * * * *
1509935 ACAGTCCCTTCATTACGATACATAACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCA
260 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
1510000 CCGTTTTTGATAAAATCAAAGTTTGT-TACTTAAATAAGACAAACCTAAATAGC-CATACTAATC
325 CCATTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATA-CTCATACTAATC
* * * * * *
1510063 CCCATTATTTTCTA-GATTAGGCACCATAAACATAGTTTTCTCATTAGGATAAATGATATTGATA
388 CCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATG
* * * * **
1510127 CTCTGATTTTGCAAAAAAAGGCTTT
452 CTTTGGTTTCGCAAGAAAAGATTTT
* * * * * * *
1510152 TTCCGCACCAATTTTTGTAAAATCTATGTTCGTTCCTCAAAAGAG-CCAACTAAGGATTCTAATA
1 TTCC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAAC-ATGGATTCTAGTA
* * * * * *
1510216 TTGATCTTCATACCTATTGTGATTAGGCATTATAAACACATTCTCCTTATTGGGATAAATGATAT
64 ATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
1510281 TAATGATTTTCTTTAGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCC
129 TGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
1510346 CCTAAA-AAGAAAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAAA
194 CCTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAA
* ** * * * * *
1510410 CACATTTCCTTCATTAGGATACATGACATCAATGCTTTGGTGTCTCAATAAAAGCTTTACTTTTC
259 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * *
1510475 ACTATTTTTGGTGGAATCAAAGTTTGTCTCTTAAGTAAAACAAACATGAATAGTCATAATAA-CC
324 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * ** *
1510539 CTTATTATTTTTGGGATTAGGCATCATAAACATAGTCTTTTCATTAAGATACGTGATATTGATGT
389 C-CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGC
* *
1510604 TTTGGTTTCTCAAGAAAGGCATTTT
453 TTTGGTTTCGCAAGAAAAG-ATTTT
* * * * **
1510629 AT-CAACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAACGAGACAAACATAAATTCTAGTAAT
1 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAAT
* * * * *
1510693 GATTTTCATACATATTGTGATTGGGCATTATAAACACATTCTCCAT-ATTAGGATAAATAATATT
66 GATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCC-TCATTAGGATAAATGATATT
* * * * * *
1510757 GATGATTTTCTTTTCCATGGAAATCTTTACTTTGCCTTATTTTCTTTAAAATCATAGTTCATCCC
130 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * ** *
1510822 ATAAATAAGATAAGCATCGATTCTCGTAACAGTCTCCATT-AATT-AAGGATT-GAGAGCCAAAA
195 CTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAA-GATTAG-GATCCAAAA
* ** * * * * *
1510884 ACACATTCCTTTCATTAGGATACATGACATTGGGGCTGTGCTATTGCAAGAAAAGCATTTCATTC
258 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * *
1510949 CTCTATTTTTTACAAAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATACTCATACTAATC
323 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * *
1511014 CCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGA
388 CCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGA
1511076 CATTTTGGAA
Statistics
Matches: 2717, Mismatches: 466, Indels: 178
0.81 0.14 0.05
Matches are distributed among these distances:
447 19 0.01
448 163 0.06
449 10 0.00
450 172 0.06
451 8 0.00
456 1 0.00
461 2 0.00
462 1 0.00
467 1 0.00
473 38 0.01
474 613 0.23
475 1190 0.44
476 341 0.13
477 154 0.06
478 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (476 bp):
TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAAT
GATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATATTG
ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCC
TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGATCCAAAAACA
CATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTT
GGTTTCGCAAGAAAAGATTTT
Found at i:1512548 original size:20 final size:19
Alignment explanation
Indices: 1512502--1512555 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
1512492 ATTTGAAGCA
1512502 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCA-C
*
1512522 ATATATCGATACAATGTGC-C
1 ATGTATCGATACAAT-T-CAC
1512542 ATGTATCGATACAA
1 ATGTATCGATACAA
1512556 CCAGTGGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 28 0.93
21 1 0.03
22 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATTCAC
Found at i:1512625 original size:19 final size:19
Alignment explanation
Indices: 1512584--1512638 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
1512574 CTACTAATTT
**
1512584 CATGT-TTGATACAATTGTC
1 CATGTATTGATACAA-TGAA
1512603 CATGTATTGATACAATGAA
1 CATGTATTGATACAATGAA
*
1512622 CATGTATCGATACAATG
1 CATGTATTGATACAATG
1512639 TATCGATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 23 0.72
20 9 0.28
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (19 bp):
CATGTATTGATACAATGAA
Found at i:1512641 original size:13 final size:13
Alignment explanation
Indices: 1512623--1512651 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1512613 TACAATGAAC
1512623 ATGTATCGATACA
1 ATGTATCGATACA
1512636 ATGTATCGATACA
1 ATGTATCGATACA
1512649 ATG
1 ATG
1512652 CATAATCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1512647 original size:32 final size:33
Alignment explanation
Indices: 1512604--1512668 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 33
1512594 ACAATTGTCC
* *
1512604 ATGTATTGATACAATG-A-ACATGTATCGATACA
1 ATGTATCGATACAATGCATA-ATCTATCGATACA
1512636 ATGTATCGATACAATGCATAATCTATCGATACA
1 ATGTATCGATACAATGCATAATCTATCGATACA
1512669 TCTGGGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 15 0.52
33 13 0.45
34 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (33 bp):
ATGTATCGATACAATGCATAATCTATCGATACA
Found at i:1514007 original size:475 final size:474
Alignment explanation
Indices: 1512967--1516436 Score: 3651
Period size: 475 Copynumber: 7.3 Consensus size: 474
1512957 CTTCCTAGCA
* *
1512967 ATCTTTATTAATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * ** *
1513032 TGGTTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTTATTTTCCTAAAAATGGAAGTTAATCCCT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-TATTTTCC-CAAAATCAAAGTTCATCCCT
* * * *
1513097 TAAATAACAGAAGCATTGATTCTTGTAACTA-TC-CCAATTCTTTTCAAGATTGGGATCCAAAAA
129 TAAATAAGACAAGCATCGATTCTCGTAAC-AGTCTCC-ATTCTTTTCAAGATTGGGATCCAAAAA
** * * *
1513160 CACATTCTATTCATTAGGATACAT-AGCATTGATGCTTTGGTGTTGCAAGAAAAGC-TTTCTTTT
192 CACATTCCCTTCATTAGGATACATGA-CATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
1513223 CACAATTTTTTTATAGAATCAAAGTTTTTCTCTTAAATAAGA-ACAACATGAATACTCATACTAT
256 CACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAATACTCATACTAA
* * * * *
1513287 TCCCCAATCTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATGCACGATACTGG
319 TCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGA
** * * * *
1513351 TGTTTTGGTTTCGTGAGAAAAGCTTTTTTCCCATCAATTATTGTAAAGTCTAAGTTCATGCCTTA
383 TGTTTTGGTTTCGCAAGAAAAGATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
1513416 A-AAGAGCCAAACATGGATTCTAGTACTA
448 ATAA-A-ACAAACATGGATTCTAGTAATG
* ** * * * *
1513444 ATTTTTTTTCATTTTGTGATTAGGCATTATAAACAAACTCTCCTCATTAGAATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * *
1513509 TGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTCTCCCAAAATCAAATTTCATCCTTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT-TCCCAAAATCAAAGTTCATCCCTT
* * * *
1513574 AAA-AAGACAAGCATCGACTCTTGTAACAGTCTCTATTCTTTTCAAGATTAGGATCCAAAAACAC
130 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACAC
* * * * *
1513638 ATTCCCTTTATTAGGATATATGACATTAATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTTCCATC
195 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
1513703 ATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATAGTCACACTATTCCCCA
260 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* * *
1513768 TTCTTTTTAGGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACACGATATT-AGTGCTTT
325 TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGA-TGTTTT
* *
1513832 GGTTTCGCAAGAAAAGATTTTTTTCCCACCAATTATTGTAAATTCTAAGTTCATGCCTCAATTAA
389 GGTTTCGCAAGAAAAGA-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA-TAA
*
1513897 AACGAACATGGATTCTAGTAATG
452 AACAAACATGGATTCTAGTAATG
* * * * * *
1513920 ATTTTCATTCATTTTGTAATTAGGTACTATAAACATATTCT-CTATATTAGGATAAATGATATTT
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTG
* * * *
1513984 ACGATTTT-TTTTGCA-GCGAAATCTTTTCTTTGCCCTATTTTCCCTAAATTCGAAGTTCATCTC
65 ATGATTTTCTTTTGCATG-GAAATCTTTTCTTTGCCCTATTTTCCC-AAAATCAAAGTTCATCCC
* * * * *
1514047 TTAAATAAGACAAGCATCAATTCTCGTAACAGTC-CCATTCTTTTTATGATTGGGAACCAAAAAT
128 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
** * *
1514111 ACATTCCCTTCAACAGGATAGC-TGACATTAATGCCTTAG-TGTCGC-AGAAAAAGCTTTTCTTT
193 ACATTCCCTTCATTAGGATA-CATGACATTGATG-CTTTGCTGTCGCAAG-AAAAGCTTTTCTTT
* * * * * *
1514173 CCACCGTTTTTAATAAAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATAGTCATATTAAT
255 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
** * *** ** * ** * **
1514238 CCCCATTCTTTTGGGGATAACAAAAGATAAACATAGTCTTCTAAGAAAGATACATGATATTGATG
320 CCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATG
* * * * * * * *
1514303 CTTTGGTTTCGCAAGAAAGGCTTTCTACCCGCCAATCTTTGTAACGTCTAAGTTCATGCCTCAA-
385 TTTTGGTTTCGCAAGAAAAGATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAT
* * *
1514367 AAGAGCTAAACATGGATTCTAGTACTA
450 AA-AAC-AAACATGGATTCTAGTAATG
* *
1514394 ATCTTCATTCATTTTTTGATTA-GCAACTATAAACACATTCTCCTCGTTAGGATAAATGATATTG
1 ATCTTCATTCATTTTGTGATTAGGC-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
*
1514458 ATGATTTTCTTTTGCAT-GAAATCTTTTCCTTGCCCTATTTTCCCAAAAATCAAAGTTCATCCCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCC-AAAATCAAAGTTCATCCCT
* * * * * *
1514522 TAAAAAATG-CATGCTTTGATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGATCCAAAAAC
129 TAAATAA-GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAAC
* * * *
1514586 ACACTT-CCTTCATTAGGATACATGACATTGATGCTTTGCTATCGCAAGAAATGTTTTTCCTTCC
193 ACA-TTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCC
* * ** * * *
1514650 ACCGTGTTTGATAGAATCAAAGTTTGTCTCCGAAATACGACAAATATGAATACTCATACTATTCC
257 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * *
1514715 CCACTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTATGATACGCAATATTGATGTT
322 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATGTT
** * * * * *
1514780 TTACTTTCGCAGGAAAGGCATTTTTT-CCACTAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAAT
387 TTGGTTTCGCAAGAAAAG-ATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-AAT
* *
1514844 GAGACAAACATGGATT-TCA-TAAATG
450 AAAACAAACATGGATTCT-AGT-AATG
* * * * *
1514869 ATCTTCATTCATTTTGTGATTAGGAACTACAAGCACATTTTCCTTATTAGGATAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * ** *
1514934 TGATTTTCTTTTACATGAAAATATTTTCTTTGCCCTCTTTTCCGTAAAATCATTGTTCA-CCCCT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-CAAAATCAAAGTTCATCCCTT
* * * * * *
1514998 AAGTAAGACAACCATCGATTCTCGTAACAGTCTCCGTTATTTTCAAAATCGGGAATCC-AAAACA
130 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG-ATCCAAAAACA
* * * *
1515062 AATTCCCTTCATTAGGATACATGACTTTCG-TGCTTTGTTGTCGCAAGAAAAGCTTTTCTTTCCG
194 CATTCCCTTCATTAGGATACATGACATT-GATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * *
1515126 CCATTTTTGGTAGTATCAAAATTAGTCTCTTAAATAAGACAAACAAGAATACTCATAATAATCCC
258 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * *
1515191 CATTCTTTTTAGGATTAGGCACCATAAACATCGTCTTTTCATTAGGATACGCGATATTAATGTTT
323 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATGTTT
* * ** * *
1515256 TGGTTTTGCAAGAAAAGCA-TTTTTCCCACC-ATTTTTGTAAAGTATAAG-TGGTGTCTCAAATG
388 TGGTTTCGCAAGAAAAG-ATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-AATA
*
1515318 AGACAAACATGGATTCTAGTAATG
451 AAACAAACATGGATTCTAGTAATG
* * * *
1515342 ATCTTCATTCACTTTGTGATTACGCACTATAAACACATTTTCCTTAGTTA-GATAAATGATATTG
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGATATTG
* * * * * * **
1515406 ATGATTTTCTATTACATGAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCATAGTT-ATGGCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-CAAAATCAAAGTTCATCCCT
* * * * * * * ** *
1515470 TAAATAAGAAAAGCATCGATTCTCGTAACAATTTCCACTATTTTCAGGATTGGGAACTTAAAGCA
129 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * * *
1515535 CATTCCTTTCATTAGGATACTTG-C---G--GCTTTGCTATCACAAGAAAAGCTTTTATTTCCAT
194 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCAC
** *
1515594 TTTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA-ACAAACATGAATACTCATACTAATCCCC
259 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * *
1515658 ATTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGGATACGTGATATTGATGTTTT
324 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATGTTTT
* * * * * *
1515723 GGTTTAGTAAGAAAGGCA-TTATTCCCACCAATTTTTGTAAGGTCTAAGTTCATGCCTCAAAAAA
389 GGTTTCGCAAGAAAAG-ATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATAAA
* *
1515787 GATAAACATGGATTCTAGTAATA
453 -ACAAACATGGATTCTAGTAATG
* * * * *
1515810 ATCTTCTTTCCTTTTATGATTAGGAACTATAAGCACATT-TCCTTCATTAGGATAAATGATATTG
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTG
* **
1515874 AAGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATTAAAATCAAAGTTCATCCCT
65 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CCAAAATCAAAGTTCATCCCT
* * * * * * *
1515939 TAAA-AAGACAAGCATCGATTCCCCTAACAGTCTTCATTCTTTTCAAGAATAGGATCCAATAACG
129 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACA
* * * * * * * * *
1516003 CATTCCCTTCTTTAGGATACATGACATTGATGCCTCGGTATCTCAACAAAAGCTTTACTTTCTAC
194 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * *
1516068 CATTTTTGGTAGAATCAAAGTTTGTCTCTTAAAGAAGACACACATGAATAGTC--A-T-A-CCCT
259 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * *
1516128 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGAATACGCGATATTGATGTTTT
324 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATGTTTT
* * ** * ** *
1516193 GGTTTTGCAAG-AAAG-TCATTTTCCTGCCAGTTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
389 GGTTTCGCAAGAAAAGAT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-AATAA
* *
1516256 GATAAACATGGATTCTAGTAATG
452 AACAAACATGGATTCTAGTAATG
* * ** **
1516279 ATCTTCATTCA-TTTGTGATTAGGCATTATAAGCACATTCTCCTCCGTAGTTTAAATGATATTGA
1 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * *
1516343 TGATTTTCTTTT-CAAGGAAATCTTTTCTTTGCCCTGTTTT-CCATAAATCAAAGTTTATCCCTT
66 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCCA-AAATCAAAGTTCATCCCTT
* *
1516406 AAATAAGACAAACATCGATTCTTGTAACAGT
130 AAATAAGACAAGCATCGATTCTCGTAACAGT
1516437 TTCTATTTTA
Statistics
Matches: 2507, Mismatches: 417, Indels: 148
0.82 0.14 0.05
Matches are distributed among these distances:
465 1 0.00
466 131 0.05
467 131 0.05
468 241 0.10
469 77 0.03
470 76 0.03
471 1 0.00
472 8 0.00
473 212 0.08
474 280 0.11
475 1019 0.41
476 233 0.09
477 95 0.04
478 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (474 bp):
ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCCAAAATCAAAGTTCATCCCTTA
AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAAAACACA
TTCCCTTCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCACCA
TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
TCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCGATATTGATGTTTTGG
TTTCGCAAGAAAAGATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATAAAACA
AACATGGATTCTAGTAATG
Found at i:1522427 original size:157 final size:154
Alignment explanation
Indices: 1522245--1528573 Score: 2148
Period size: 157 Copynumber: 40.2 Consensus size: 154
1522235 ATTTTCATTA
* * * * *
1522245 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCCTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * *
1522309 ATTGCGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
1522374 AGAACTTTTTTCCACCATTTTTGATG
130 A-AACTTTTTTCCACCATTTTTGATG
* ** * **
1522400 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
* * * * *
1522463 AGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
* * ** *
1522524 TACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1522557 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1522622 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1522685 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1522717 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1522781 ATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1522846 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* ** * **
1522872 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * *
1522935 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1522996 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * * ** * *
1523029 AAAGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1523094 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1523157 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1523189 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1523253 ATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1523318 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* * ** * **
1523344 AAATCAAAGTTTCTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * *
1523407 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1523468 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1523501 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1523566 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1523629 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1523661 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1523725 ATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1523790 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* * ** * **
1523816 AAATCAAAGTTTCTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * * *
1523879 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGTTGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1523940 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1523973 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1524038 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1524101 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1524133 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1524197 ATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
1524262 AGAACTTTTTTCCACCATTTTTGATG
130 A-AACTTTTTTCCACCATTTTTGATG
* ** * **
1524288 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
* * * * *
1524351 AGGATT-ATGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
* * * ** *
1524412 TACAAGAAAGGCAGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-AC-TTTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1524445 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1524510 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1524573 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1524605 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1524669 ATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1524734 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* * ** * **
1524760 AAATCAAAGTTTCTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * *
1524823 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1524884 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1524917 AAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1524982 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * *
1525045 CTGGAAATCTTTTCTT-CACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1525077 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1525141 ATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1525206 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* * ** * **
1525232 AAATCAAAGTTTCTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * *
1525295 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1525356 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1525389 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1525454 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1525517 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1525549 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1525613 ATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1525678 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* ** * **
1525704 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
* * * * *
1525767 AGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1525828 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * *
1525861 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATT-TATTTT
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCT-TTTT
** * * * * * * ** *
1525925 GTGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTG
62 AAGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG
** * * * * *
1525988 CCTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 -CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1526021 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1526085 ATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
1526150 AGAACTTTTTTCCACCATTTTTGATG
130 A-AACTTTTTTCCACCATTTTTGATG
* ** * **
1526176 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
* * * * *
1526239 AGGATT-ATGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
* * * ** *
1526300 TACAAGAAAGGCAGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-AC-TTTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1526333 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1526398 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1526461 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1526493 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1526557 ATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1526622 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* * ** * **
1526648 AAATCAAAGTTTCTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * *
1526711 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1526772 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1526805 AAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** *
1526870 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG-
** * * * * *
1526933 CTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1526965 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1527029 ATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1527094 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* * ** * **
1527120 AAATCAAAGTTTCTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
** * * * *
1527183 TGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1527244 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1527277 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * ** *
1527342 TGATTAAGCA-CAACAAGCACATTCTCCGTT-A-TAGGATAAAGGTTATTGATGTTTTTCTTTTG
63 AGATTGAGCACCAA-AAACACATTC-CC-TTCATTAGGATACATGATATTGATGTTTTGGTGTTG
** * * * * *
1527404 CCTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 -CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * *
1527437 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCTTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1527501 ATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1527566 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* ** * **
1527592 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGCCCATTCTTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT-CTTATTCTTTTT
* * * * *
1527655 AGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGGCT-T
62 AAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTGG-TGT
** * ** *
1527716 CACAAGAAAGGCTGTTTCCCCACCAAGTTTTG-T-
123 TGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * *
1527749 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATT-TATTTT
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCT-TTTT
** * * * * * * ** *
1527813 GTGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTG
62 AAGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGTTTTGGTGTTG
** * * * * *
1527876 CCTGGAAATCTTTTCTT-TACCCTATTTTCATTA
125 -CAAGAAAACTTTT-TTCCACCAT-TTTTGA-TG
* * * * *
1527909 AAATCAAAGTTTATCCCCTAA-AAGACAAGCATTGATTCTCGTAACAATCATTATTCCTTTCAAG
1 AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATC-TTATTCTTTTTAAG
* * * * *
1527973 ATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
65 ATTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGA
*
1528038 TGAACTTTTTTCCACCATTTTTGATG
130 -AAACTTTTTTCCACCATTTTTGATG
* ** * *
1528064 AAATCAAAGTTTGTCTCTTAAGTAAGACAAACA-TGAATAGTCAT-ACTAATGGC-CATTCTTTT
1 AAATCAAAGTTTGTCCCTTAA-TAAGACAAACATTG-ATTCTCGTAAC-AAT--CTTATTCTTTT
* * * * * *
1528126 TAGGATT-AGGCACCATAAACATAGT--CTTCCTATTAGGAGACATGATATTGATGTTTTGACT-
61 TAAGATTGA-GCACCAAAAACACATTCCCTT-C-ATTAGGATACATGATATTGATGTTTTG-GTG
** * * ** *
1528187 TCACAATAAAGGCTGTTTCCCCACCAAGTTTTG-T-
122 TTGCAAGAAA-ACT-TTTTTCCACC-ATTTTTGATG
* * * * * * * ** * *
1528221 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
1 AAA-TCAAAGTTTGTCCCT-TAATAAGACAAACATTGATTCTCGTAACAATCTT-ATTCTTTTTA
* * * * * * * ** * **
1528286 TGATTAAGCA-CAACAAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTATTTCTTCTAC
63 AGATTGAGCACCAA-AAACACATTC-CCTTCATTAGGATACATGATATTGATGT-TTTGGTGTTG
** * * *** *
1528349 CTGGAAATCTTTTCTTTGCC-CTATTTTCCTTA
125 CAAGAAAAC-TTT-TTT-CCACCATTTTTGATG
* ** * * * * **
1528381 AAATCGAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAATAGTTCCCATTCTTTTTAA
1 AAATCAAAGTTTGTCCCTT-AATAAGACAAACATTGATTCTCGTAACA-ATCTTATTCTTTTTAA
* * * * * * *
1528446 GATT-AGGAACCAAAAACACATTCCCTTCATTAGTATACAAGACATTGATGCTTTGGTGTCGAAA
64 GATTGA-GCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAA
1528510 GAAAAGCTTTTTTTTCCACCATTTTTGAT-
128 GAAAA-C--TTTTTTCCACCATTTTTGATG
*
1528539 AGAATCAAAGTTTG-CCTCTTAAATAAGACTAACAT
1 A-AATCAAAGTTTGTCC-CTT-AATAAGACAAACAT
1528574 GAATACTTAT
Statistics
Matches: 4348, Mismatches: 1371, Indels: 906
0.66 0.21 0.14
Matches are distributed among these distances:
155 287 0.07
156 259 0.06
157 2080 0.48
158 1163 0.27
159 470 0.11
160 50 0.01
161 37 0.01
162 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (154 bp):
AAATCAAAGTTTGTCCCTTAATAAGACAAACATTGATTCTCGTAACAATCTTATTCTTTTTAAGA
TTGAGCACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTTTTGGTGTTGCAAGAA
AACTTTTTTCCACCATTTTTGATG
Found at i:1522983 original size:472 final size:472
Alignment explanation
Indices: 1522099--1529336 Score: 12620
Period size: 472 Copynumber: 15.3 Consensus size: 472
1522089 GGTGTCTACA
* * * * * * * * *
1522099 TGCCTCAAATGAGAAAAAGATGGATTCTAGTACTAATCTTCAATCATTTTGTGATTAGGCACTAT
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
* * * * * * * *
1522164 AAGCACATTCGCC-TCATTAGGATAAATGATATTAATGATTTTCTTTTGCATTGAAATCTTTTCT
66 AAGCACATTCTCCTTTA-TAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCT
1522228 TTACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAAT
130 TTACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAAT
* *
1522293 CATTATTCCTTTCAAGATTGCGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
195 CATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATG
*
1522358 CTTTGGTGTTGCAAGAAGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGT
260 CTTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGT
*
1522423 AAGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
325 AAGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTC
*
1522488 TTCCTATTAGGAGACATGATATTGATGTTTTGGCTTTACAAGAAAGGCTGTTTCCCCACCAAGTT
390 TTCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTT
1522553 TTGTAAAGTCTAAGTTCG
455 TTGTAAAGTCTAAGTTCG
1522571 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1522636 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1522701 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1522766 ATTATTCTTTTCAAGATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
1522831 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1522896 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1522961 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
*
1523026 TGTAAAGTCTATGTTCG
456 TGTAAAGTCTAAGTTCG
1523043 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1523108 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1523173 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
1523238 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1523303 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTCTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1523368 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1523433 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1523498 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1523515 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1523580 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1523645 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1523710 ATTATTCTTTTCAAGATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1523775 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTCTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1523840 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
*
1523905 TCCTATTAGGAGACATGATATTGTTGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1523970 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1523987 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1524052 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1524117 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1524182 ATTATTCTTTTCAAGATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1524247 TTTGGTGTTGCAAGAAGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
* *
1524312 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTAGGATTATGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
* *
1524377 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTTACAAGAAAGGCAGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1524442 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1524459 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1524524 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1524589 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1524654 ATTATTCTTTTCAAGATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1524719 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTCTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1524784 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1524849 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
*
1524914 TGTAAAGTCCAAGTTCG
456 TGTAAAGTCTAAGTTCG
1524931 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1524996 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
*
1525061 CACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
1525126 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1525191 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTCTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1525256 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1525321 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1525386 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1525403 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1525468 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1525533 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
1525598 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
1525663 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
*
1525728 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1525793 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1525858 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
* *
1525875 TGCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1525940 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1526005 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1526070 ATTATTCTTTTCAAGATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1526135 TTTGGTGTTGCAAGAAGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
* *
1526200 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTAGGATTATGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
* *
1526265 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTTACAAGAAAGGCAGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1526330 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1526347 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1526412 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1526477 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1526542 ATTATTCTTTTCAAGATTGTGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1526607 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTCTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1526672 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1526737 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
*
1526802 TGTAAAGTCCAAGTTCG
456 TGTAAAGTCTAAGTTCG
1526819 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1526884 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1526949 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
1527014 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
*
1527079 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTCTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
1527144 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1527209 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1527274 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1527291 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
*
1527356 AAGCACATTCTCCGTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1527421 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
1527486 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
1527551 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
*
1527616 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
1527681 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1527746 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
* *
1527763 TGCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTTATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1527828 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1527893 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
*
1527958 ATTATTCCTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
196 ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
1528023 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
261 TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
* *
1528088 AGACAAACATGAATAGTCATACTAATGGCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCT
326 AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
* *
1528153 TCCTATTAGGAGACATGATATTGATGTTTTGACTTCACAATAAAGGCTGTTTCCCCACCAAGTTT
391 TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
1528218 TGTAAAGTCTAAGTTCG
456 TGTAAAGTCTAAGTTCG
1528235 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
* * *
1528300 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTATTTCTTCTACCTGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * * * *
1528365 TGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAATAG
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCT-AA-AAGACAAGCATTGATTCTCGTAACA-
* ** * * * *
1528430 TTC-CCATTCTTTTTAAGATTAG-GAACCAAAAACACATTCCCTTCATTAGTATACAAGACATTG
193 ATCATTATTCTTTTCAAGATT-GCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTG
* * * *
1528493 ATGCTTTGGTGTCGAAAGA-AAAGCTTTTTTTTCCACCATTTTTGAT-AGAATCAAAGTTTGCCT
257 ATGCTTTGGTGTTGCAAGATGAA-C--TTTTTTCCACCATTTTTGATGA-AATCAAAGTTTGTCT
* * * * * ** *
1528556 CTTAAATAAGACTAACATGAATACTTATACAAAT-CCCTATT-TTTTTCAAGAGTAGGCACCATA
318 CTTAAGTAAGACAAACATGAATAGTCATACTAATGCCC-ATTCTTTTT-TGGATTAGGCACCATA
* * * * * * *
1528619 AACATAGTCTTCCCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAAAGGTTTTTTCCC
381 AACATAGTCTTCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTT-CC
* * *
1528684 CCACCAATTTTTGTAAAGTCAAAGTTTG
445 CCACCAAGTTTTGTAAAGTCTAAGTTCG
* * * ** *
1528712 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCGTAAT
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
* * * * *
1528777 AAGCACATTCTCCTCTATAGGATAAAGGCTGTTGATGCTTTTCTTTTGCATGGAAATCTTTTCTT
66 AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * * * * * *
1528842 TGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCACGTAACAG
131 TACCCTATTTTCATTAAAATCAAAGTTTATCCCCT-AA-AAGACAAGCATTGATTCTCGTAACAA
* * * * * * *
1528907 TC-TCTATTATTTTCAAGATTG-GAAACCTAAAACACATTCCCATCATTAAGATACGTGACATTA
194 TCAT-TATTCTTTTCAAGATTGCG-AACCAAAAAGACATTCCCTTCATTAGGATACATGACATTG
* * ** * *
1528970 ATGCTTTGGTATGGCAAGAT-AAGCTTTTCTTTCCACTGTTTTTTATGGAATCAAAGTTTGTCTC
257 ATGCTTTGGTGTTGCAAGATGAA-C-TTT-TTTCCACCATTTTTGATGAAATCAAAGTTTGTCTC
** * * * *
1529034 TTAAAAAAGACAAATATGAATCGTCATACTAAT-CCTCATTCTTTTTTAGGATTAGGCACTAGAA
319 TTAAGTAAGACAAACATGAATAGTCATACTAATGCC-CATTCTTTTTT-GGATTAGGCACCATAA
* * * ** * * * *
1529098 ACATAGTCTTCCCATTAGCATACGCGATATTGATGTTTTGGTTTCGCATGAAAGGCAT-TTTTCC
382 ACATAGTCTTCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGC-TGTTTCCC
* * * * *
1529162 CATCAATTTTTTTTAAGTCAAAGTTCG
446 CACCAAGTTTTGTAAAGTCTAAGTTCG
* * * * * *
1529189 TGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTATGCACTAT
1 TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
* * * ** ***
1529254 AAGCACATTTTCC-TCATTAGGAT-AAGTGATATTGAT-AATTT-TTTTGTAGGGAAATCTTTTC
66 AAGCACATTCTCCTTTA-TAGGATAAAG-GTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTC
*
1529315 TTTGCCCTATTTTTC-TTAAAAT
129 TTTACCCTA-TTTTCATTAAAAT
1529337 TGAAGTTATT
Statistics
Matches: 6538, Mismatches: 204, Indels: 45
0.96 0.03 0.01
Matches are distributed among these distances:
472 5739 0.88
473 6 0.00
474 92 0.01
475 44 0.01
476 153 0.02
477 434 0.07
478 69 0.01
479 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (472 bp):
TGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACAAC
AAGCACATTCTCCTTTATAGGATAAAGGTTATTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
TACCCTATTTTCATTAAAATCAAAGTTTATCCCCTAAAAGACAAGCATTGATTCTCGTAACAATC
ATTATTCTTTTCAAGATTGCGAACCAAAAAGACATTCCCTTCATTAGGATACATGACATTGATGC
TTTGGTGTTGCAAGATGAACTTTTTTCCACCATTTTTGATGAAATCAAAGTTTGTCTCTTAAGTA
AGACAAACATGAATAGTCATACTAATGCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCT
TCCTATTAGGAGACATGATATTGATGTTTTGGCTTCACAAGAAAGGCTGTTTCCCCACCAAGTTT
TGTAAAGTCTAAGTTCG
Found at i:1529665 original size:19 final size:19
Alignment explanation
Indices: 1529641--1529696 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
1529631 TGTATCAATA
1529641 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
*
1529660 CATTGTATCGATACATAGTT
1 CATTGTATCGATACAT-GCT
*
1529680 AATTGTATCGATACATG
1 CATTGTATCGATACATG
1529697 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:1529686 original size:20 final size:19
Alignment explanation
Indices: 1529642--1529696 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
1529632 GTATCAATAC
*
1529642 ATTGTATCGATACATGCTC
1 ATTGTATCGATACATGCTA
*
1529661 ATTGTATCGATACATAGTTA
1 ATTGTATCGATACAT-GCTA
1529681 ATTGTATCGATACATG
1 ATTGTATCGATACATG
1529697 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (19 bp):
ATTGTATCGATACATGCTA
Found at i:1529759 original size:13 final size:13
Alignment explanation
Indices: 1529741--1529770 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1529731 GATACATGGG
1529741 ACATTGTATCGAT
1 ACATTGTATCGAT
*
1529754 ACATTGTATTGAT
1 ACATTGTATCGAT
1529767 ACAT
1 ACAT
1529771 GAAGAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:1530011 original size:10 final size:11
Alignment explanation
Indices: 1529982--1530016 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
1529972 TCCAACAACT
1529982 GAACATCAAGA
1 GAACATCAAGA
1529993 GAACTATCAAGA
1 GAAC-ATCAAGA
1530005 -AACATCAAGA
1 GAACATCAAGA
1530015 GA
1 GA
1530017 TCAAAGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 7 0.32
11 8 0.36
12 7 0.32
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (11 bp):
GAACATCAAGA
Found at i:1531618 original size:475 final size:474
Alignment explanation
Indices: 1530544--1532615 Score: 2402
Period size: 475 Copynumber: 4.4 Consensus size: 474
1530534 AGTTTATTCT
* * * * * * *
1530544 TTAAATAAGACAAGCATCGATTCTCATAATAGTCCCCATTCTTTTTAAGATTAGGAACCAAAAAC
1 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTAGGAACCTAAAAC
* * * *
1530609 ACATTCCCTTCATTAGGATACACGACATTGATGCTTTTGG-GTCGA-AAGA-ACATCATTTCTTT
66 ACATTCCCTTCATTAAGATACATGACATTGATGC-TTTGGTGTC-ACAAGATA-AGCTTTTCTTT
* * * *
1530671 CCACCGTTTTTGATAGAATAAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACCAAT
128 CCACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * *
1530736 CCCTATT-TTTTTCAGGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACACGATTTTGAT
193 CCCCATTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATACACGATATTGAT
** ** * * **
1530800 GCTTTGGTTTGGCAAGAAACGC-TTTTTCCCCATAAATTTTGGTAAACTCTAAGTTCATTTCTCA
257 GCTTTGGTTTCACAAGAAA-GCATTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * ** *
1530864 AATGAGACAAACGTGGATACTAGTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACA
320 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCAATATAAGCACA
* * * * * * **
1530929 TTCTT-TTCATTAGGATAAGTGACATTGATGATTTTCTTTTGCAAGAATATTTTTTCTTTGTCCT
385 TT-TTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATTTTTTCATTACCCT
*
1530993 ATTTCCTTAAAATCGAAGTTCATCCC
449 ATTTCCTTAAAATCAAAGTTCATCCC
* * *
1531019 TTAAATATGACAAGCATCGATTCTCGTAACAATCTCCATTGTTTTCAACATTTA-GAACCTAAAA
1 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGA-TTAGGAACCTAAAA
** ** * * *
1531083 CACATTCCCTGAATTAAGATATGTGACATTGATGCTTTGGTGTCGCAAGATAAGCTTTTTTTTCT
65 CACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGATAAGCTTTTCTTTCC
*
1531148 ACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAATAGTCATACTAATCC
130 ACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
*** * *
1531213 CCATTCTTTTTAGGATTA-GCACCATAAACATAGTCTTCCCATTAGGATTTGCGATATTAATGTT
195 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATACACGATATTGATGCT
* * * * *
1531277 TTGGTTTCATAAGAAATGCA-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCATACG
260 TTGGTTTCACAAGAAA-GCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
1531341 AGACAAACATGGATTCTAGTAATAATCTTTATTTATTTTGTGATAAGGCAATATAAGCACATTTT
324 AGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCAATATAAGCACATTTT
* * * *
1531406 CCTCCTTAGGATAAATGATATTAATTATTTTCTTTTGCATGAAAATTTTTTCATTACCTTATTTT
389 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATTTTTTCATTACCCTA-TTT
*
1531471 TCTTAAAATCAAAGTTCATCCC
453 CCTTAAAATCAAAGTTCATCCC
* * * * * **
1531493 TTCAATAAGATAAGCAAT-GATTCTCGTAACAGTCTCCAATATTTTCAGGATTAGGGGCCTAAAA
1 TTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTAGGAACCTAAAA
* * * * * *
1531557 CACTTTCCCTTACTTTAGGATACATGGCATTGATGCTTTGGTGTCACAAGTTAAGCTTTTTTTTC
65 CACATTCCCTT-CATTAAGATACATGACATTGATGCTTTGGTGTCACAAGATAAGCTTTTCTTTC
* * * *
1531622 CACCATTTTTGATGGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATACTCATGCTAATC
129 CACCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
* * * *
1531687 CCCATTCTTTTCAGGGA-GAGGCACCATGAACATAGTCTTCCCATTAGGACACACGATATTGATG
194 CCCATTCTTTTTA-GGATTAGGCACCATAAACATAGTCTTCCCATTAGGATACACGATATTGATG
** * *
1531751 CTTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTATGTTTATGCCTCAAA
258 CTTTGGTTTCACAAGAAA-GCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * *
1531816 TAAGACAAACGTGGATTCTAGTAATGGTCTTTATTTATTTTGTGATTAGGCACA-ATAAGCACAT
322 TGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCA-ATATAAGCACAT
* * * * * * * * *
1531880 TCTCCT--TTACAAGATAAAGGTTATTGA-CATTTTCTTTTGCATG-GAATCTTTTCTTTGCCCT
386 TTTCCTCATT--AGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATTTTTTCATTACCCT
* * *
1531941 ATTTTCCTTAAAATCGAAGTTCAACCG
449 A-TTTCCTTAAAATCAAAGTTCATCCC
** * * *
1531968 TTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATATTCAAGATTGGGAACCTAAAAC
1 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTAGGAACCTAAAAC
* * * *
1532033 ACATTCTCTTCATTAAGATACGTGACATTAATGCTTTGGTGTCGCAAGATAAGCTTTTCTTTCCA
66 ACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGATAAGCTTTTCTTTCCA
* * * *
1532098 CCATTTTTGATGGAATCAAAG-TTGTCTCATAAATAAGACAAACATAAATAGCCATACTAATCCC
131 CCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * * * * **
1532162 CATTCTTTTTAGAATTAGGCACCATAAACATATTCCT-CCAGTAGGATACGCGATATTGATATTT
196 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTT
* * * *
1532226 TGGTTTCACAAGAAAGAAATTTTTCCCACC-ATTTTTGTGAAGTCTAAATTCGTGCCTCAAATGA
261 TGGTTTCACAAGAAAG-CATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * *
1532290 GACAAACATGGATTCTAGCAATGGTCTTCATTTATTTTGTGATTAGGCACTATAAGCACATTTTC
325 GACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCAATATAAGCACATTTTC
* * * *
1532355 CTCATTAGAATAAATGATACTGATGATTTTCTTTTGCATGAAAATTTTTTGATTACCCTATTTTC
390 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATTTTTTCATTACCCTATTTCC
* *
1532420 TTAAAAATAAAAGTTCATCTC
455 TT-AAAATCAAAGTTCATCCC
** * *
1532441 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTTTATTATTTTCAGGATTCGGAACCTAAAAC
1 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTAGGAACCTAAAAC
* * *
1532506 ACATTCCATTCATTAAGATACATGACATTGATGCTTTCGTGTCACAAGAAAAGCTTTTCTTTCCA
66 ACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGATAAGCTTTTCTTTCCA
* * * * *
1532571 TCGTCTTTGGTAGAATCAAAGTTTGCCT-TTCAAATAAGACAAACA
131 CCGTTTTTGATGGAATCAAAGTTTGTCTCTT-AAATAAGACAAACA
1532616 AGAAAAGCTT
Statistics
Matches: 1347, Mismatches: 222, Indels: 57
0.83 0.14 0.04
Matches are distributed among these distances:
471 102 0.08
472 72 0.05
473 363 0.27
474 230 0.17
475 384 0.29
476 84 0.06
477 111 0.08
478 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTAGGAACCTAAAAC
ACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGATAAGCTTTTCTTTCCA
CCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTT
TGGTTTCACAAGAAAGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
ACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCAATATAAGCACATTTTCC
TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATTTTTTCATTACCCTATTTCCT
TAAAATCAAAGTTCATCCC
Found at i:1533586 original size:475 final size:474
Alignment explanation
Indices: 1532665--1537307 Score: 4749
Period size: 475 Copynumber: 9.8 Consensus size: 474
1532655 TACATGTTAA
* * * * * * *
1532665 TGATGCTTTGGTTTCGCAAGAAA-GTATTTTTCCCGCCAATTTTTCTAAAGTCTATGTTTGTGTC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * *
1532729 TCAAATGAGACAAGCATGGATTCTAGTAATGGTCATCATTTATTTTGTGATTAGGCACTATAAGC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
* * * * * * * *
1532794 ACATTCT-CT-TTTACAAGATAAAGGTTAATGAT-ATTTTCTTTTGCGTGGAAATCTTTTCTTTA
131 ACATTTTCCTCATT--AGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTTTG
*
1532856 CCCTATTTTTCTTAAAATCGAAA-TTCATCCCTTAAATAAGACAAGCACCGATTCTCATAATAGT
193 CCCTA-TTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGT
* * * * *
1532920 CTCC-ATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGATACGTGCCATTGAT
256 C-CCTATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*** * * * * * * * *
1532984 GCTTCAATGTCGCAAGATAAGCTTTTCTTTCCACCTTTTTTGATGGAATCAAAGCTTGTCTCATA
320 GCTTTGGTGTTGAAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
1533049 AATAAGACAAACATGAATATTCATACTAATCCTTATTCTTTTCAGGATTAGGCACGATAAACATA
385 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATA
* * * *
1533114 GTTTTTCGATTTGCATAAGCGATTT
450 GTTTTTCCATTAGGATAAGCGATAT
* * * * * *
1533139 TGATGTTTTAGTTTCGCATGAAAGGCATTTTTCCTACCAATTTTTTTAAAGTCTAAGTTCATGCT
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
1533204 TCAAATGAGACAAATATGGATTCCAGTGATGATCTTCATTTATTTTGTGATTAGGTACTATAAGC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
* * * * * * *
1533269 ATATTTTCCACATTAGG-TAAGTGATATTGATGATTTTCTTCTGTAGGCAAATCATTTCTTTGCC
131 ACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC
* * ** * * *
1533333 TTATTTTCGTTGAAATTGAAGCTCATCTCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCCC
195 CTATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCCC
* * ** *
1533398 TATTCTTTTTAGGATTGGGAACCAAAAACATGTTCTCTTCATTAGGATACATGACATTGATGCTT
259 TATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* *
1533463 TGGTGTTGAAAGAAAAGCTTTTCTTTCCATCGTATTTGATAGAATCAAAGTTTGCCTCTTAAATA
324 TGGTGTTGAAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
1533528 AGACAAACATGAATAGTCAAAATAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
389 AGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGT-T
1533593 TCTT--ATTAGGATACA-CGATAT
453 T-TTCCATTAGGATA-AGCGATAT
* * * ** * * * *
1533614 TGATGCTTTT-GTTTTGCAAGAAACG-TTTTTTCCCCATAAATTTTGGTAAACTCTATGTTCGTT
1 TGATG-TTTTGGTTTCGCAAGAAAGGCATTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * ** *
1533677 CCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTGCCATAA
64 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAA
* * * * * * *
1533742 ACACATTCTT-TTCATTAGGATAAGTTATATTTATGATTTTCTTTTGCAAGAAAATATTTTCTTT
129 GCACATT-TTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTTT
* * * *
1533806 GCCCTATTTTCTTTAAAATCAAATTTCATCCTTTAAATAAGAGAAGCATCGATTCCCATAATAGT
192 GCCCTATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGT
* *
1533871 CTCC-ATTATTTTTAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGATACGTGACATTGAT
256 C-CCTATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * *
1533935 GCTTTTGTGTCGCAAGATAAGATTTTTTTTTCCATCGTTTTTGATGGAATCAAAGTTTGTCTCTT
320 GCTTTGGTGTTGAAAGAAAAG-CTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
1534000 AAATAAGACAAACATGTATAGTCATACTAATCCCCATTTTTTTCAGGCTTAAGCACCATAAACAT
384 AAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACAT
* * *
1534065 AGTCTTCTT--ATTAGGTTATGCAATAT
449 AGT-TT-TTCCATTAGGATAAGCGATAT
* * * * ** * **
1534091 TGATGTCTTCGTTTCGTATGAAATACATTTTTCCCACCAATTTTTTTAAAGTCTAAGTTTATGCC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
1534156 TCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTTATTTTTTGATTAGGCACTCTAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
* *
1534221 ACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCATTACC
131 ACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAATCTTTTCTTTGCC
* * * **
1534286 CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGATAAGCATCGATTCTCGTAGCAGTCTC
195 CTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC-C
* * * * *
1534351 C-AATATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCTTTAGGATACGTGACATTGATGCT
258 CTATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
1534415 TTGGTG-TCACAAGTAAAGCTTTTTTTTTCCACCGTTTTTTATAGAATCAAAGTTTGTTTCTTAA
323 TTGGTGTTGA-AAGAAAAGC-TTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
1534479 ATAAGACAATCATG-A-A-T-A-A-T--T-CCAATTCTTTTCAGAATTAGGCACCATAAACATTG
386 ATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
1534535 TCTTCCCAATAGGATACA-TGATAT
451 TTTTTCCATTAGGATA-AGCGATAT
* * *** * *
1534559 TTATGTTTTGGCTTT-TCAAGAAAGGCATTTTTCCTGTCAATTTTTGTAAAGTTTAAGTTCATGC
1 TGATGTTTTGG-TTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * **
1534623 CTCGAATGAGACAAACATGGATTCCAGTAATGGTCTTCATACATTTTGTGATTAGGCACTATAAG
65 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAG
* * *
1534688 CACATTTTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTACATGAAATATTTTCTTTGCC
130 CACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAATCTTTTCTTTGCC
*
1534753 CTATTTTCTTAAAAGTCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATAATAGTCTC
195 CTATTTTCTTAAAA-TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC-C
* * *
1534818 C-ATTATTTTCT-GTATTAGGAACCTAAAACACATTCCATTCATTAGGATACATGACATTGATGC
258 CTATTATTTT-TAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
**** * * *
1534881 TTTAGCCCCT-AAAGAAAAGCTTTTC-TACCA---TTTTTGACAGAATCAAAGTTTGCCTCTTAA
322 TTT-GGTGTTGAAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
1534941 ATAAGACAAACATGAAAACTCATACTAATCCCTATTCTTTTCAGGAGTAGGCACCATGAACATAG
386 ATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * *
1535006 TGTTCCCATTAAGATACGTGATGT
451 TTTTTCCATTAGGATAAGCGATAT
* * * * * *
1535030 TGATGCTTTGGTTTTGCAGGAAAGGCATTTTTTCCACCAATTTTTTGTAAAGTCTATGTTTGTGC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAA-TTTTTGTAAAGTCTAAGTTCGTGC
* * * * * * *
1535095 CTCCAATGAGACAAACTTGGATTCTAGTAATGGTTTTCTTTTATTTTATGATTAGACACTATAAG
65 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAG
* * * *
1535160 CACTTTTTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTACATAAAAATCTTTTCTTTGC
130 CACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTTTGC
* * * * *
1535225 CCTATTTTCCTTAAAATTAAAGTTCATCCTTTAAATAAGATAAGCATTGATTCTCATAACAGTCC
194 CCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCC
* * * * * * ** *
1535290 CTATTCTTTTCTA-GATTTGGAACCAAAAACACATTCTCATCATAAGGATACAAAACATTGATCC
258 CTATTATTTT-TAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * ** * *
1535354 TTTGGTGTCGCAGGAAAAGCTTTTCTTTTTCGTCGTTCCTGATAGAATCAAAGTTTATCACTTAA
322 TTTGGTGTTGAAAGAAAAGCTTTTC-TTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
1535419 ATAAGACAAAGATGAATACTAATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAG
386 ATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAG
* * *
1535484 -TTTTCCTTTTAGAATATGCGATAT
451 TTTTTCC-ATTAGGATAAGCGATAT
** * * *
1535508 TGATGTTTTGGTTTCAAAAGAAAGGGATTTTTCCCACCAATTTTTGTAAAGTCCATGTTCGTGCC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * *
1535573 TGAAATGAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTATGATTAGGCAC-ATAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
* * * *
1535637 ACATTCCTCCTCATTAGGATAAATGATATTGATGACTTTCTTTTGCCTGTAAATCTTTT-TTTAC
131 ACATT-TTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGC
* * * ** *
1535701 CTTATTTTTCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTTGTAATAGTCT
194 CCTA-TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCC
* * * * * *
1535766 TTATT-TTTTTCAGGATTGGGAACCTAAAAAACATTCTCTTGATTAGGATACATAACAGTGATGC
258 CTATTATTTTT-AGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
1535830 ATTT-GTG-TCACAAGAAAAGCTTTTCTTTCCACCCTTTTTGATAGAATTAAAGTTTGTCTTTTA
322 -TTTGGTGTTGA-AAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
1535893 AATAAAATAAACATGAATAGTCATACCAATCTC-ATTCTTTTCAGGATTAGGTACCATAAACATA
385 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATA
* * * *
1535957 GTCTTTCCTTTAGGATATGCAATAT
450 GTTTTTCCATTAGGATAAGCGATAT
* * * * **
1535982 TGATGTTTTGGTTTTGCATGAAAGGCATTTTTCCCACCAATTTTTGTGATGTCTAAGTTTTTGCC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * * * * *
1536047 TCAAATGTGAAAAACATGGAATCTTGTAATGATCTTCATTTATTTTGAGGTTATGCATTA-AAGC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
* * * * * * *
1536111 ACATTTTCCTTACTAGGAAAAATGATATTAAGGATTTTCTTTTGCATGAAAATCTTATCCTTGCC
131 ACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC
* * * * * * *
1536176 ATATTTACCTTAAAA-CTAAGGTTCATCCCATAAATAAGACAAGCATCGATTCTCGTAACAGTTT
195 CTATTT-TCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAG-TC
* * *
1536240 CCT-TTATTTTTAGGATTAGGAACCTAAAACAAATTCCCTTCATTAGGATACATGACATTCATGC
257 CCTATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * * * *
1536304 TTTAGTGTCGCAAGATAAGCTTTTCTTTCCA-CTATTTTTTATGGAATCAAAATTTGTTTCTTGA
322 TTTGGTGTTGAAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
1536368 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGCG-TTAGGGACTATAAATATA
386 ATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAG-GATTAGGCACCATAAACATA
** *
1536432 GTGCTTCCATTAGGATACGCGATAT
450 GTTTTTCCATTAGGATAAGCGATAT
* * * * *
1536457 TGATGTTTTAGTTTCGTATGAAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTACC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * *
1536522 TCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTTATTTTGAGATTAGGCACTCTAAGC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
* *
1536587 ACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAAAAATCTTTTCTTTGCC
131 ACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTTTGCC
* * *
1536652 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCAAT-GATACTCGTAATAGT-C
195 CTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCATAATAGTCC
* * * * * *
1536715 TTCAATATTTTCAGGGTTGGGAACCTAAAACACATTCCCTTCGTTAGGATACGTGACATTGATGC
258 CT-ATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * ** * * * *
1536780 TTCGGTGTT-ACAAGATAAGCTTTTCTTTCCATTATTTTTTATGGAATCAAAGTTTGTCTTTTCA
322 TTTGGTGTTGA-AAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
1536844 ATAAGGCAAAAAAGAATAGTCATACTAATCCTTATTCTTTTCAGAATTAGGCACCATAAACATAG
386 ATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAG
* * *
1536909 -TCTTCCTAGTAGGATACGCGATAT
451 TTTTTCC-ATTAGGATAAGCGATAT
* * * *
1536933 TGATATTTTGGTTTTGCAAGAAAGGCATTTTTTCCACCGATTTTTGT-AAGTCTAAGTTCGTGCC
1 TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * ** * * * *
1536997 TCAAATGATATAAACATGGATTCTAGTAATGATCTTCATTCGTTTTGTAATCAGGCACTAGAAAC
66 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
** * * * * *
1537062 ACATTTTTTTCCTTCA-TATAAATGATACTGATGATTTTCTTCTGTATGGAAATCTTTTCTTT-C
131 ACATTTTCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTTTGC
* * * * * * *
1537125 CTTTATTTTTCATAACATCGAAGCTCATCCCTTAAACAAGA-AAGGCATCGATTCTCATAATAAT
194 C-CTA-TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-GCATCGATTCTCATAATAGT
* * * * * *
1537189 CCCAATTCTTTTCAAGATTGGGAA-CTAAAAACATATTCCCTTCATTAGGATACATGACAGTGAT
256 CCCTATTATTTTTAGGATTGGGAACCT-AAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
1537253 GCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
320 GCTTTGGTGTTGAAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGT
1537308 GTTAAGGAGA
Statistics
Matches: 3456, Mismatches: 619, Indels: 187
0.81 0.15 0.04
Matches are distributed among these distances:
462 39 0.01
463 1 0.00
464 1 0.00
465 5 0.00
466 13 0.00
467 133 0.04
468 191 0.06
469 5 0.00
470 4 0.00
471 77 0.02
472 125 0.04
473 181 0.05
474 389 0.11
475 944 0.27
476 631 0.18
477 584 0.17
478 133 0.04
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (474 bp):
TGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAGC
ACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAATCTTTTCTTTGCCC
TATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCCCTA
TTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
GTGTTGAAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
ACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTTTTT
CCATTAGGATAAGCGATAT
Found at i:1538825 original size:15 final size:15
Alignment explanation
Indices: 1538791--1538840 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
1538781 GAATAAATAA
1538791 AAAATTGTTGAAAATG
1 AAAATTGTTGAAAA-G
*
1538807 -AAATTCTTGAAAAG
1 AAAATTGTTGAAAAG
*
1538821 AAAATTGTCGAAACAG
1 AAAATTGTTGAAA-AG
1538837 AAAA
1 AAAA
1538841 GAAAACTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 1 0.03
15 22 0.76
16 6 0.21
ACGTcount: A:0.54, C:0.06, G:0.16, T:0.24
Consensus pattern (15 bp):
AAAATTGTTGAAAAG
Found at i:1543955 original size:476 final size:468
Alignment explanation
Indices: 1543059--1544468 Score: 1574
Period size: 476 Copynumber: 3.0 Consensus size: 468
1543049 CTCATCTCGT
* * * * * * * *
1543059 AAGAAAGGCTTTCTTCCCTCTAGTTTTTGTAATGTCTAAGTTCATGCCTCAAGTGAGCCAAACAT
1 AAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAT
* *
1543124 GGATTTTAGC-ATTGATCTTCATTCATTTTGTGATTAGGCACTCTAAACATATTCTCCTCATTAG
66 GGATTCTA-CTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAG
*
1543188 GATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTTTTTTCCTTAAAAT
130 GATAAATAATATTGATGATTTTCTTTTGCATGAAAATC--TT-TTT-CCCTATTTTCCTTAAAAT
* * *
1543253 CAATGCTCA-TCCTTTAAATAAGACAAGCATCAATTCTCATAACAATCCCCCT-TTTTTCCAAGC
191 CAATGTTCATTCC-TTAAATAAGACAAGCATCAATTCTCATAACAAT--CTCTATTTTT-CAAGA
* * *
1543316 TTGGGAACCAAAAACACATTCCCATCATTAGGATACATGGCATTGATGCTTTGGTGTCGTC-CGA
252 TTGGGAACCAAAAACACATT-CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC-ACAAGA
** *
1543380 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
315 AAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * * * *
1543445 TACTCATACTATTCCCTATTCTTTTCAAGATTAGGCACCACAAGCATAATCTTCTCATTAAGATA
380 TACTCATACTAATCTC-ATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAAGATA
*
1543510 CACGATATTGGTGCTTTGGTTTCATA
444 CACGATATTGATGCTTTGGTTTCA-A
* * *
1543536 AA-AAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAT
1 AAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAT
* * * * ** * *
1543600 GGATTCTACTATTGACCTTCTTTCATTTTGTTATTAGACACTATAAACCCATTCTCCTCAATAAG
66 GGATTCTACTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
* * * * * *
1543665 ATTAATGATATTAATGATTTTCATTTCCATTAAAATCAATTGTTTACCCTATTTTCCTTAAAATC
131 ATAAATAATATTGATGATTTTCTTTTGCATGAAAATC--TT-TTT-CCCTATTTTCCTTAAAATC
* * * * *
1543730 AAAGTTCATTTCTTAAATAAGACAAGTAGT-GATTCTCGTAACAATCTCTATTCTTATCAAGATT
192 AATGTTCATTCCTTAAATAAGACAAGCA-TCAATTCTCATAACAATCTCTATT-TT-TCAAGATT
* * *
1543794 GGGAACCAAAAACACATTCTCTTCATTAGGATACAAGACATTGAGGCTTTGGTGTCACAAGAAAA
254 GGGAACCAAAAACACATTC-CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAA
* * * * *
1543859 GCTTTTCTTCCCACTATTTTTGATAAAATCAAAGTTTACCTCTTAAATAAGACCAACATAAATAC
318 GCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAC
* * * * * * *
1543924 ACATGCTAATCATCATTCTTTTCGGGATTAGGCACCGTAAACGTAGTCTTCTCATCATGACACAC
383 TCATACTAATC-TCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAAGATACAC
1543989 GATATTGATTG-TTTGGTTTCAA
447 GATATTGA-TGCTTTGGTTTCAA
* * *
1544011 AAGAAAAGCTTTCTTCCCACCAAGTTTTGTAAAGTCTATGTTCATGCCTGAAATGAACCAAACAT
1 AAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAT
* * * **
1544076 GGATTCTAGTATTGATCATCATTCATTCTGTGATTAGGCACTATAAACATATTCTCCTTGTTAGG
66 GGATTCTACTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
* * *
1544141 ATAAATAATATTGATGATTTTCTTTTGCATGAAAGTC--CTT---TA-TTTGCTCTAAAATCAAT
131 ATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTTCCCTATTTTCCT-TAAAATCAAT
* * * * * *
1544200 GTTTATCCCTTAAATAAGACAAGCATCAATTATCATAACGGATCTATTATTTTT-AGGATTGGGA
195 GTTCATTCCTTAAATAAGACAAGCATCAATTCTCATAAC-AATCT-CTATTTTTCAAGATTGGGA
* * * * *
1544264 ACCTAAAACACATTGCCTTCATTAGGATACATGGCATTAATACTTTGGTGTCGCAAGAAAACCTT
258 ACCAAAAACACATT-CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTT
* * * * *
1544329 TTCTTTCCA-TATTTTTTGATAGATTCCAAGTTTGCCTCTTAATTAAGACAAACTTGAATAGTCA
322 TTCTTTCCACTA-TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCA
* * * *
1544393 TACTAATCCTCATTGTTTTCTGGATTAGGCACCATAAACGTAGTCTTCTCA-TAAGGGTACATGA
386 TACTAAT-CTCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAA-GATACACGA
1544457 TATTGATGCTTT
449 TATTGATGCTTT
1544469 AGGTCCGTGC
Statistics
Matches: 779, Mismatches: 134, Indels: 51
0.81 0.14 0.05
Matches are distributed among these distances:
465 5 0.01
466 180 0.23
467 44 0.06
468 6 0.01
469 4 0.01
471 2 0.00
474 3 0.00
475 8 0.01
476 518 0.66
477 9 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (468 bp):
AAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAT
GGATTCTACTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
ATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTTCCCTATTTTCCTTAAAATCAATG
TTCATTCCTTAAATAAGACAAGCATCAATTCTCATAACAATCTCTATTTTTCAAGATTGGGAACC
AAAAACACATTCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
TTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTA
ATCTCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAAGATACACGATATTGAT
GCTTTGGTTTCAA
Found at i:1544859 original size:430 final size:421
Alignment explanation
Indices: 1544055--1544871 Score: 965
Period size: 430 Copynumber: 1.9 Consensus size: 421
1544045 TCTATGTTCA
* *
1544055 TGCCTGAAATGAACCAAACATGGATTCTAGTATTGATCATCATTCATTCTGTGATTAGGCACTAT
1 TGCCTAAAATGAACCAAACATGAATTCTAGTATTGATCATCATTCATTCTGTGATTAGGCACTAT
** *
1544120 AAACATATTCTCCTTGTTAGGATAAATAATATTGATGATTTTCTTTTGCATGAAAGTCCTTTATT
66 AAACATATTCTCCTCATTAGAATAAATAATATTGATGATTTTCTTTTGCATGAAAGTCCTTTATT
* * *
1544185 TGCTCTAAAATCAATGTTTATCCCTTAAATAAGACAAGCATCAATTATCATAACGGATCTATTAT
131 TGCTCCAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTATCATAAAGGATCTATTAT
* * * * *
1544250 TTTTAGGATTGGGAACCTAAAACACATTGCCTTCATTAGGATACATGGCATTAATACTTTGGTGT
196 TTTTAAGATTGGGAACCAAAAACACATTGCCGTCATTAGGAAACATGACATTAATACTTTGGTGT
* * * * * *
1544315 CGCAAGAAAACCTTTTCTTTCCATATTTTTTGATAGATTCCAAGTTTGCCTCTTAATTAAGACAA
261 CACAAGAAAACCTTTTCTTTCCATAGTTTTTGATAGAATCAAAGTTTACCTCTTAAGTAAGACAA
* * * * * * *
1544380 ACTTGAATAGTCATACTAATCCTCATTGTTTTCTGGATTAGGCACCATAAACGTAGTCTTCTCAT
326 ACTTGAATACTCAAACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAT
1544445 AAGGGTACATGATATTGATGCTTTAGGTCCG
391 AAGGGTACATGATATTGATGCTTTAGGTCCG
* * * * * * *
1544476 TGCCTAAAATGAGCCAAACATGAATTCTATTATTGATCTTTATTCATTTTGTGATTAGGCCCTGT
1 TGCCTAAAATGAACCAAACATGAATTCTAGTATTGATCATCATTCATTCTGTGATTAGGCACTAT
* * * * * *
1544541 AAACATATTCTCCTCATTAGAATTAGTGATATTGATGATTTTCTTTTGGATGGAAATATTTTCTT
66 AAACATATTCTCCTCATTAGAATAAATAATATTGATGATTTTCTTTTGCAT-G-AA-A-GTCCTT
** * * *
1544606 TATCGTATTTTCGGCAAAATCAAAGTTTATCCCTTAAATAAGATC-AGTATCGATTCTCATAATA
127 TAT--T-TGCTC--CAAAATCAAAGTTTATCCCTTAAATAAGA-CAAGCATCAATTATCATAA-A
** * * ** * * *
1544670 GTCTCTATTCTTTTTAATATTGGGAACCAAAAACACATTTTCGTCATTGGGAAACATGATATTGA
185 GGATCTATTATTTTTAAGATTGGGAACCAAAAACACATTGCCGTCATTAGGAAACATGACATTAA
* ** * *
1544735 T-CTTTGGTGTCATAAGAAAAGTTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTATCTCTT
250 TACTTTGGTGTCACAAGAAAACCTTTTCTTTCCATAGTTTTTGATAGAATCAAAGTTTACCTCTT
* *
1544799 AAGTAAGACAAA-TATGAATACTTAAACTATTCCCCATTCTTTTCAGAATTAGGCACCATAAACA
315 AAGTAAGACAAACT-TGAATACTCAAACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACA
1544863 TAGTCTTCT
379 TAGTCTTCT
1544872 AATTAGGATA
Statistics
Matches: 324, Mismatches: 60, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
421 100 0.31
422 1 0.00
423 2 0.01
424 1 0.00
425 7 0.02
427 1 0.00
428 3 0.01
429 1 0.00
430 155 0.48
431 53 0.16
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (421 bp):
TGCCTAAAATGAACCAAACATGAATTCTAGTATTGATCATCATTCATTCTGTGATTAGGCACTAT
AAACATATTCTCCTCATTAGAATAAATAATATTGATGATTTTCTTTTGCATGAAAGTCCTTTATT
TGCTCCAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTATCATAAAGGATCTATTAT
TTTTAAGATTGGGAACCAAAAACACATTGCCGTCATTAGGAAACATGACATTAATACTTTGGTGT
CACAAGAAAACCTTTTCTTTCCATAGTTTTTGATAGAATCAAAGTTTACCTCTTAAGTAAGACAA
ACTTGAATACTCAAACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAT
AAGGGTACATGATATTGATGCTTTAGGTCCG
Found at i:1545891 original size:476 final size:473
Alignment explanation
Indices: 1544476--1546021 Score: 1875
Period size: 476 Copynumber: 3.2 Consensus size: 473
1544466 TTTAGGTCCG
* * * * * * *
1544476 TGCCTAAAATGAGCCAAACATGAATTCTATTATTGATCTTTATTCATTTTGTGATTAGGCCCTGT
1 TGCCTCAAATGAGACAAACATGTATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * *
1544541 AAACATATTCTCCTCATTAGAATTAGTGATATTGATGATTTTCTTTTGGATGGAAATATTTTCTT
66 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *** * * * *
1544606 TAT-CGTATTTTCGGCAAAATCAAAGTTTATCCCTTAAATAAGATC-AGTATCGATTCTCATAAT
131 T-TCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGTAAC
* * * * * ** * * * *
1544669 AGTCTCTATTCTTTTTAATATTGGGAACCAAAAACACATTTTCGTCATTGGGAAACATGATATTG
194 AGTCCCCATTCTTTTAAAGATTGGGAACCAAAAACAAATTCCCTTCATTAGGATACATGACATTG
* * * *
1544734 AT-CTTTGGTGTCATAAGAAAAGTTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTATCTCT
259 ATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
1544798 TAAGTAAGACAAATATGAATACTTAAACTATTCCCCATTCTTTTCAGAATTAGGCACCATAAACA
324 TAAGTAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAG-ATTAGGCACCAT-AACA
* * * ** * * *
1544863 TAGTCTTCTAATTAGGATACGCGATATTGCTATTTTGGTTTCGCAACAAAGGCTTT-TTTCTCAC
387 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCT-A-
* *
1544927 CAATTTTTGTAAAGTGTAAGTTCA
450 TAATTTTTGTAAAGTCTAAGTTCA
* * * *
1544951 TGCCTCAAATGAAACAAACATGGATTCTACTGA-TGATATTCATTCATTTTGTGATTAGGCACTA
1 TGCCTCAAATGAGACAAACATGTATTCTAGT-ATTGATCTTCATTCATTTTGTGATTAGGCACTA
* ** * * * *
1545015 TAAACACATTATTTTTATTATGATAAGTGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
65 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
1545080 TTGCCTTATTTTCCTTAAAATTAAAGTTCATCCCTTATATAAAACAAGCATCGATTCTCGTAACA
130 TTTCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * *
1545145 GTCCCCATTCTTTTAAAGATTTGGGAACCGAAAACAAATTCCCTTCATTAAGATACTTGACATTG
195 GTCCCCATTCTTTTAAAGA-TTGGGAACCAAAAACAAATTCCCTTCATTAGGATACATGACATTG
** *
1545210 ATGCTTTGGTGTCGCAAGAAAAGGCTTTT-TTTCCACCATTTTTGATAGAATCAAAGTTTGCCTC
259 ATGCTTTGGTGTCATAAGAAAA-GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
* * * * *
1545274 TTAAGTAAGACAAACATGAACAGTCATACTAATCCCCATTCCTTTCGAGATTAGGCACCATAAAA
323 TTAAGTAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTC-AGATTAGGCACCATAACA
* * ** *
1545339 GTAGTCTTCTCATAAGGATACACGATATTGATGGTTTCATTTCGAAAGAAAGGCTTTCTTCCCAC
387 -TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCTA-
1545404 TAATTTTTGTAAAGTCTAAGTTCA
450 TAATTTTTGTAAAGTCTAAGTTCA
* * *
1545428 TGCCTGAAATGAGCCAAATATGTATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
1 TGCCTCAAATGAGACAAACATGTATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
1545493 TAACACATTCTTCTTAGTAGGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
66 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
1545558 TTCCCTATTTTCCTTAAAATCAATA-TTCATCCCATAAATAAGACAAGCATCAATTCTCGTAACA
131 TTCCCTATTTTCCTTAAAATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * * *
1545622 GTCCCCAATT-TTTTCAGGATTGGGAACCAAAAATATATTCCCTTTATTAGGATACATGGCATTA
195 GTCCCC-ATTCTTTTAAAGATTGGGAACCAAAAACAAATTCCCTTCATTAGGATACATGACATTG
1545686 ATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
259 ATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
1545751 TAAATAAGACAAACATGAATACTCATACTATTCCCTATTCTTTTCAAGATTAGGCACCACAAGCA
324 TAAGTAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTC-AGATTAGGCACCATAA-CA
* * * * *
1545816 TAATCTTCTCATTATGATACACAATATTGGTGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCTATA
387 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCTAT-
*
1545881 AATGTTTGTAAAGTCTAAGTTCA
451 AATTTTTGTAAAGTCTAAGTTCA
* * * *
1545904 TGCCACAAATGAGATAAACATGTATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCCTAT
1 TGCCTCAAATGAGACAAACATGTATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
*
1545969 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTCGCATGG
66 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG
1546022 TGTTAGGATC
Statistics
Matches: 913, Mismatches: 143, Indels: 29
0.84 0.13 0.03
Matches are distributed among these distances:
474 1 0.00
475 179 0.20
476 368 0.40
477 351 0.38
478 14 0.02
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (473 bp):
TGCCTCAAATGAGACAAACATGTATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAT
AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
TTCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
TCCCCATTCTTTTAAAGATTGGGAACCAAAAACAAATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
AGTAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGATTAGGCACCATAACATAGT
CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCTATAATTT
TTGTAAAGTCTAAGTTCA
Done.