Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2320
Parameters: 2 7 7 80 10 50 1000
Length:  53204

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78--122
3
15.3
3
95
4
83
33
0
0
66
0.92
2003--2041
16
2.5
16
83
4
53
28
2
0
69
1.02
3312--3356
21
2.1
22
83
4
56
46
0
0
53
1.00
3315--3356
22
2.0
20
86
9
57
45
0
0
54
0.99
3623--3653
13
2.4
13
94
0
53
83
0
0
16
0.64
6710--6745
2
18.5
2
94
5
65
50
0
50
0
1.00
7147--7190
18
2.4
18
88
0
61
38
0
0
61
0.96
7156--7199
22
2.0
23
86
4
63
29
0
0
70
0.88
7163--7205
16
2.5
17
85
14
61
32
0
0
67
0.91
7363--7397
18
1.9
18
88
0
52
65
0
0
34
0.93
10006--10041
2
18.5
2
94
5
65
50
0
0
50
1.00
10859--10898
15
2.9
14
89
10
64
40
0
0
60
0.97
11397--11429
17
1.9
17
88
11
50
51
6
3
39
1.42
11472--11587
34
3.4
34
77
7
119
38
12
9
38
1.76
11472--11557
33
2.6
34
81
3
93
36
13
10
39
1.80
12099--12139
19
2.2
19
90
0
64
39
9
9
41
1.71
12698--12840
73
2.0
73
79
10
159
39
7
3
48
1.49
14287--14323
2
18.5
2
100
0
74
48
0
51
0
1.00
17246--17294
18
2.6
19
87
9
73
79
2
10
8
1.01
18824--18887
33
2.0
32
81
9
76
43
1
0
54
1.09
19312--19336
4
6.2
4
100
0
50
76
0
0
24
0.80
20029--20053
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22094--22118
5
5.0
5
100
0
50
20
0
80
0
0.72
24172--24226
23
2.4
23
93
0
92
25
27
12
34
1.92
25587--25620
17
2.1
17
88
5
52
47
2
0
50
1.16
27084--27130
23
2.0
23
100
0
94
65
4
12
17
1.40
28253--28316
28
2.3
28
84
10
78
59
0
4
35
1.18
28413--28474
31
2.0
30
84
12
81
59
0
0
40
0.97
33882--33947
16
3.9
18
79
18
56
36
0
0
63
0.95
33885--33947
17
3.8
17
84
16
64
36
0
0
63
0.95
33900--33947
17
2.8
18
84
15
66
35
0
0
64
0.94
33964--34022
29
2.2
25
80
14
64
55
0
1
42
1.09
34071--34132
29
2.2
28
85
2
79
30
1
0
67
1.00
35568--35592
2
12.5
2
100
0
50
52
0
0
48
1.00
36100--36134
17
2.0
18
88
5
54
45
0
0
54
0.99
37337--37361
2
12.5
2
100
0
50
52
0
0
48
1.00
40592--40620
4
7.2
4
100
0
58
24
0
0
75
0.80
40981--41037
16
3.7
15
73
15
53
66
3
3
26
1.24
40980--41041
18
3.6
18
67
32
55
66
3
3
27
1.23
41350--41382
14
2.4
14
94
0
57
36
0
0
63
0.95
44645--44735
3
30.3
3
93
0
155
65
2
1
30
1.11
44934--44993
21
2.8
21
80
12
61
43
0
1
55
1.10
46035--46073
19
2.0
20
85
5
53
58
0
2
38
1.12
45991--46098
27
4.1
28
70
15
86
50
0
0
48
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46052--46112
31
1.9
32
84
15
83
54
0
1
44
1.10
47214--47243
4
7.8
4
92
7
53
76
0
0
23
0.78
48294--48369
35
2.2
35
81
9
93
18
13
0
68
1.21
49902--49935
11
2.9
12
86
8
52
61
2
0
35
1.11
49902--49946
23
2.0
23
86
8
65
64
2
0
33
1.06
50066--50091
13
2.0
13
100
0
52
76
0
0
23
0.78
51392--51422
2
15.5
2
100
0
62
51
0
0
48
1.00
52013--52048
9
4.0
9
86
13
56
22
0
0
77
0.76
52014--52047
10
3.6
10
88
11
54
17
0
0
82
0.67
52398--52437
21
1.9
21
89
0
62
62
0
2
35
1.09
52715--52759
2
23.0
2
88
4
65
55
0
0
44
0.99

Tables:   1

The End!