Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2322
Parameters: 2 7 7 80 10 50 1000
Length:  72253

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2860--2911
20
2.5
21
87
3
70
36
11
19
32
1.87
2917--3878
479
2.0
479
100
0
1924
32
21
13
33
1.91
4627--4701
20
3.8
20
83
0
87
37
14
8
40
1.76
5609--5649
21
2.0
22
85
9
59
21
19
9
48
1.77
12912--13018
40
2.6
42
82
4
139
36
12
22
28
1.90
19716--19768
21
2.4
23
81
6
65
50
0
0
49
1.00
20341--20395
21
2.6
21
82
0
74
38
23
3
34
1.73
23420--23475
21
2.7
20
83
8
76
41
19
3
35
1.69
23965--24012
22
2.3
20
79
13
53
39
0
0
60
0.97
23948--24024
34
2.3
33
82
13
95
38
1
1
58
1.15
24160--24218
25
2.3
26
82
8
68
45
0
0
54
0.99
24265--24306
21
2.0
21
82
17
52
50
2
4
42
1.36
24741--24811
30
2.4
30
95
0
124
23
25
8
42
1.82
26908--26937
13
2.3
13
100
0
60
30
16
13
40
1.87
29227--29349
50
2.4
51
82
4
133
24
22
13
39
1.89
29289--29632
79
4.4
79
78
4
284
26
25
14
33
1.94
29310--29668
158
2.3
158
79
5
368
28
24
14
33
1.94
42068--42124
9
6.8
8
77
18
53
85
8
3
1
0.77
42068--42117
15
3.4
14
81
13
64
86
10
2
2
0.75
42069--42114
16
2.9
16
90
3
67
84
10
2
2
0.79
42068--42142
22
3.6
20
75
10
62
82
6
8
2
0.92
43095--43286
94
2.0
97
83
8
248
23
30
17
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43231--43836
61
10.0
61
83
5
727
25
28
18
27
1.98
43845--44136
86
3.4
85
77
8
290
21
23
11
43
1.85
43809--44163
41
8.5
41
72
11
215
21
26
12
39
1.89
43805--44164
83
4.3
85
74
9
269
21
26
12
40
1.89
43845--44142
83
3.5
84
79
8
275
20
24
11
43
1.85
44777--44845
20
3.8
19
71
26
69
27
11
15
44
1.81
44797--44821
13
1.9
13
100
0
50
36
16
16
32
1.90
44776--44856
33
2.5
33
93
0
135
29
12
14
43
1.82
44827--44852
13
2.0
13
100
0
52
30
7
15
46
1.74
44843--44934
29
3.5
29
68
25
94
28
16
15
40
1.88
44843--44955
49
2.3
49
96
0
208
28
16
14
40
1.88
45956--45981
13
2.0
13
100
0
52
30
15
15
38
1.88
45936--45999
32
2.0
33
87
3
94
28
14
17
40
1.88
51599--51624
13
2.0
13
100
0
52
30
15
15
38
1.88
51579--51642
32
2.0
33
87
3
94
28
14
17
40
1.88
54137--54484
78
4.4
77
75
9
258
27
25
15
32
1.95
54099--54484
157
2.4
156
79
7
390
27
24
15
32
1.95
59924--60015
45
2.0
45
97
0
175
30
26
11
31
1.92
63322--63357
16
2.2
17
90
5
56
41
0
8
50
1.33
67619--67665
20
2.5
20
82
6
62
63
4
0
31
1.13
68090--68146
23
2.5
22
81
10
62
57
1
0
40
1.09

Tables:   1

The End!