genome.fa.s2323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2323
Parameters: 2 7 7 80 10 50 1000
Length:  70515

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503--579	31	2.4	32	91	4	129	36	18	12	32	1.89
505--566	19	3.6	19	66	28	57	37	19	12	30	1.89
555--579	13	1.9	13	100	0	50	32	16	16	36	1.90
3443--3497	20	2.7	20	85	2	74	36	14	10	38	1.81
5330--6394	155	6.9	154	73	7	690	37	19	17	25	1.94
5281--6394	154	7.2	153	71	9	557	37	19	17	25	1.93
7146--7173	5	5.6	5	100	0	56	39	0	0	60	0.97
8020--8075	13	4.2	13	82	8	69	3	21	0	75	0.96
8704--9517	167	4.9	165	81	8	804	53	7	10	28	1.62
9396--9430	18	1.9	18	88	0	52	48	5	14	31	1.67
8714--9578	331	2.6	330	81	8	840	53	7	10	28	1.62
10721--10745	13	1.9	13	100	0	50	36	16	16	32	1.90
10809--10833	13	1.9	13	100	0	50	32	16	16	36	1.90
10842--10962	52	2.3	52	94	2	208	33	18	18	29	1.94
12945--13029	43	2.0	43	100	0	170	18	32	22	25	1.97
17787--17838	21	2.4	21	87	9	70	84	15	0	0	0.62
17784--17821	18	2.2	18	90	4	60	89	10	0	0	0.49
17766--17838	25	2.8	26	84	10	80	80	16	1	1	0.85
17766--17838	24	2.9	24	84	10	76	80	16	1	1	0.85
17784--17853	24	2.9	23	81	8	77	81	14	4	0	0.84
18093--18155	17	3.6	17	79	14	74	84	9	6	0	0.79
18096--18152	22	2.6	21	78	10	60	84	10	5	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18093--18155	26	2.4	27	89	7	94	84	9	6	0	0.79
19114--19901	31	24.8	31	75	14	478	23	30	15	31	1.95
19119--19901	63	12.3	63	77	12	562	23	30	15	31	1.95
19500--19901	225	1.8	217	85	5	563	22	32	14	30	1.94
19715--19976	31	7.9	35	82	9	209	22	33	13	30	1.93
19713--19996	67	4.3	65	76	11	222	22	34	13	29	1.92
19914--19996	36	2.3	36	89	4	123	24	38	10	26	1.88
20012--20287	43	6.1	43	82	10	345	25	25	18	31	1.98
20017--20340	92	3.5	92	94	1	549	25	24	18	31	1.97
20241--20461	52	3.9	55	74	13	180	23	25	14	36	1.93
20241--20627	169	2.2	173	82	5	446	22	25	15	36	1.93
21203--21227	13	1.9	13	100	0	50	36	16	16	32	1.90
21290--21314	13	1.9	13	100	0	50	32	16	16	36	1.90
21323--21495	52	3.3	52	96	0	319	34	18	17	28	1.94
23478--23562	43	2.0	43	100	0	170	18	32	22	25	1.97
28319--28387	25	2.9	23	79	12	77	81	14	4	0	0.84
28322--28372	11	4.6	11	81	15	61	84	15	0	0	0.63
28316--28355	19	2.2	18	90	4	62	90	10	0	0	0.47
28319--28372	22	2.4	23	87	9	76	85	14	0	0	0.61
28315--28372	25	2.3	25	88	5	82	84	15	0	0	0.62
28315--28372	8	7.0	8	77	14	64	84	15	0	0	0.62
28627--28689	17	3.6	17	79	14	74	84	9	6	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28630--28686	22	2.6	21	78	10	60	84	10	5	0	0.77
28627--28689	26	2.4	27	89	7	94	84	9	6	0	0.79
29648--30435	31	24.8	31	75	15	480	23	30	15	31	1.95
29653--30435	63	12.3	63	77	12	564	23	30	15	30	1.95
30034--30435	225	1.8	217	85	5	563	22	32	14	30	1.94
30249--30510	31	7.9	35	82	9	209	22	33	13	30	1.93
30247--30530	67	4.3	65	76	11	222	22	34	13	29	1.92
30448--30530	36	2.3	36	89	4	123	24	38	10	26	1.88
30546--30821	43	6.1	43	82	10	336	25	25	18	31	1.98
30551--30874	92	3.5	92	93	1	540	25	24	18	32	1.97
30775--30995	52	3.9	55	74	13	180	23	25	14	35	1.94
30775--31161	169	2.2	173	82	5	446	22	25	15	36	1.93
31737--31761	13	1.9	13	100	0	50	36	16	16	32	1.90
31825--31849	13	1.9	13	100	0	50	32	16	16	36	1.90
31858--32030	52	3.3	52	95	0	310	34	17	17	29	1.94
34013--34097	43	2.0	43	100	0	170	18	32	22	25	1.97
38856--38906	11	4.6	11	81	15	61	84	15	0	0	0.63
38852--38889	19	2.1	18	90	5	58	89	10	0	0	0.49
38853--38906	22	2.4	22	87	9	74	85	14	0	0	0.61
38851--38906	8	7.0	8	76	15	62	83	16	0	0	0.64
38851--38921	25	3.0	24	81	6	81	80	15	4	0	0.86
39161--39223	17	3.6	17	79	14	74	84	9	6	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39164--39220	22	2.6	21	78	10	60	84	10	5	0	0.77
39161--39223	26	2.4	27	89	7	94	84	9	6	0	0.79
40182--40969	31	24.8	31	76	14	489	23	30	15	31	1.95
40187--40969	63	12.3	63	77	12	573	23	30	15	30	1.95
40500--41039	194	2.8	191	77	13	512	22	32	14	30	1.94
40568--40969	225	1.8	217	86	5	572	22	32	14	30	1.94
40783--41044	31	7.9	35	82	9	209	22	33	13	30	1.93
40781--41064	67	4.3	65	76	11	222	22	34	13	29	1.92
40982--41064	36	2.3	36	89	4	123	24	38	10	26	1.88
41080--41355	43	6.1	43	82	10	336	25	25	18	31	1.98
41085--41408	92	3.5	92	93	1	540	25	24	18	32	1.97
41309--41529	52	3.9	55	74	13	180	23	25	14	35	1.94
41309--41695	169	2.2	173	82	5	446	22	25	15	36	1.93
42271--42295	13	1.9	13	100	0	50	36	16	16	32	1.90
42360--42384	13	1.9	13	100	0	50	32	16	16	36	1.90
42393--42565	52	3.3	52	96	0	319	34	18	17	28	1.94
44548--44632	43	2.0	43	100	0	170	18	32	22	25	1.97
45764--45985	82	2.7	82	75	8	227	45	15	22	16	1.85
46055--46261	43	4.8	43	77	2	146	36	19	26	18	1.94
46064--46300	86	2.8	86	81	3	253	36	16	26	19	1.93
46349--46817	42	11.2	42	70	11	185	36	17	28	16	1.92
46408--46794	84	4.6	83	70	9	243	37	17	28	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46433--46816	167	2.3	167	77	8	372	37	17	28	16	1.92
47078--47225	44	3.4	44	80	12	187	39	16	24	19	1.91
47078--47238	88	1.8	88	91	2	270	40	14	24	19	1.90
47070--47256	44	4.3	43	75	8	153	39	14	25	20	1.91
47243--47351	48	2.3	48	91	0	173	42	19	20	18	1.90
47312--47398	36	2.4	36	88	1	122	47	10	20	21	1.80
47659--47902	90	2.7	90	87	6	327	28	13	29	28	1.94
48159--48472	171	1.8	172	80	7	377	42	13	20	23	1.87
48561--48592	9	3.4	9	91	8	55	0	0	12	87	0.54
52488--52540	19	2.7	19	79	2	61	33	18	9	37	1.83
61642--61682	20	2.0	22	90	9	68	39	21	14	24	1.91

Tables:   1

The End!