genome.fa.s2326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2326
Parameters: 2 7 7 80 10 50 1000
Length:  94483

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3011--3097	38	2.3	38	87	2	120	35	16	17	31	1.92
4584--4658	20	3.8	20	76	0	87	33	12	12	42	1.79
4584--4661	40	2.0	39	87	2	111	33	11	12	42	1.79
6858--6889	10	3.2	10	100	0	64	18	21	37	21	1.94
18669--18695	11	2.5	11	100	0	54	85	14	0	0	0.61
19944--22283	29	80.9	29	83	6	2599	28	30	17	24	1.97
19793--21934	723	3.0	722	89	4	2990	28	30	16	24	1.97
22846--22920	20	3.8	20	76	0	87	33	12	12	42	1.79
26403--26446	21	2.2	20	84	12	54	65	9	0	25	1.21
29107--29493	210	1.9	208	89	1	603	30	15	16	37	1.90
30493--30526	17	1.9	18	94	5	61	11	35	8	44	1.72
31925--31950	5	5.2	5	100	0	52	0	57	0	42	0.98
33055--33100	22	2.0	22	87	4	65	41	8	0	50	1.33
33892--33935	23	1.9	23	90	0	70	45	0	2	52	1.13
34893--34947	6	9.2	6	79	16	53	25	1	1	70	1.06
34896--34929	17	1.9	18	94	5	61	23	2	2	70	1.15
35467--35505	20	1.9	21	89	5	62	35	7	0	56	1.28
35510--35549	20	2.1	20	86	9	57	22	0	22	55	1.44
35516--35565	19	2.5	21	81	12	61	20	0	20	60	1.37
44587--44634	11	4.5	10	80	12	51	83	0	12	4	0.79
44570--44643	30	2.3	33	84	13	102	78	0	10	10	0.97
44570--44642	31	2.3	32	86	9	98	79	0	10	9	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44574--44620	18	2.6	17	80	9	58	82	0	6	10	0.82
44587--44648	21	3.0	21	77	13	65	79	0	12	8	0.94
44587--44648	20	3.0	20	75	13	63	79	0	12	8	0.94
48849--48942	11	8.0	11	69	21	57	3	20	1	75	1.00
48851--48910	26	2.4	25	77	2	66	3	20	0	76	0.92
48897--48942	18	2.6	17	83	6	56	2	19	2	76	1.00
48852--48942	17	5.4	17	70	8	60	3	19	1	75	1.00
50191--50232	20	2.2	20	86	4	59	50	0	2	47	1.14
50868--50944	40	1.9	40	84	10	104	61	3	25	9	1.44
51582--51633	20	2.5	22	90	9	83	42	13	15	28	1.85
51744--51911	52	3.3	50	85	5	203	28	14	14	42	1.84
54281--54343	27	2.3	27	94	0	108	26	33	12	26	1.93
58058--58120	13	5.3	13	73	21	66	38	14	14	33	1.86
58035--58137	33	3.1	33	91	2	154	36	16	13	33	1.88
60682--60721	13	3.1	13	81	0	53	42	12	10	35	1.76
60750--60789	20	2.0	21	95	5	73	30	17	12	40	1.86
62137--62167	16	1.9	16	93	0	53	35	9	0	54	1.33
66994--67044	20	2.6	20	90	3	77	35	17	17	29	1.93
69791--69994	79	2.6	79	82	3	223	29	17	28	24	1.97
70013--70396	52	7.3	51	69	13	235	32	12	25	29	1.93
70271--70401	51	2.5	52	80	10	142	32	12	24	30	1.92
69898--70398	263	1.9	263	88	4	760	31	13	26	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72760--72785	13	2.0	13	100	0	52	38	15	15	30	1.88
72823--72880	13	4.0	13	74	23	53	29	17	17	36	1.92
72824--72899	32	2.4	32	93	0	125	31	18	15	34	1.92
72836--72900	19	3.8	18	73	24	68	32	18	13	35	1.90
72937--72994	21	2.7	22	81	7	75	32	15	15	36	1.89
75463--75523	25	2.4	27	86	8	83	45	3	0	50	1.17
77969--78001	3	11.0	3	100	0	66	0	33	0	66	0.92
78488--78553	5	14.2	5	73	23	56	57	1	1	39	1.17
78488--78554	14	4.9	14	73	21	61	58	1	1	38	1.17
78524--78569	19	2.5	19	85	3	58	65	0	2	32	1.05
79176--79269	37	2.5	36	78	10	100	54	0	5	40	1.23
79269--79297	12	2.3	13	94	5	51	72	0	0	27	0.85
79416--79464	22	2.2	21	79	13	53	46	2	2	48	1.25
79716--79762	2	23.5	2	95	0	85	51	2	0	46	1.13
80918--80952	12	3.0	11	91	8	52	22	0	0	77	0.78
81227--81270	22	2.0	22	82	4	54	61	0	0	38	0.96
82091--82180	13	6.9	13	66	26	57	38	14	15	31	1.87
82136--82201	20	3.7	20	73	26	83	37	12	18	31	1.87
82090--82200	33	3.4	33	93	3	190	38	13	16	31	1.87
88350--88386	13	2.8	13	87	0	56	32	10	16	40	1.83
90903--90957	19	2.8	19	86	2	65	32	16	14	36	1.89

Tables:   1

The End!