genome.fa.s2328.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2328
Parameters: 2 7 7 80 10 50 1000
Length:  83737

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524--642	61	2.0	61	94	1	213	39	1	16	42	1.59
568--604	16	2.2	17	90	9	58	48	0	10	40	1.38
1564--1611	16	3.2	15	74	8	53	54	0	4	41	1.20
1683--1863	87	2.0	90	86	5	253	39	5	7	47	1.56
6005--6030	13	2.0	13	100	0	52	30	15	15	38	1.88
11860--12337	242	2.0	243	96	0	886	33	17	16	32	1.93
14107--14131	13	1.9	13	100	0	50	36	16	16	32	1.90
14084--14151	33	2.1	33	88	2	102	32	14	17	35	1.91
16193--16244	20	2.4	21	84	12	70	3	26	50	19	1.65
16508--16548	22	2.0	21	86	13	59	41	4	21	31	1.74
33355--33391	19	2.0	18	89	5	56	78	18	0	2	0.87
34790--35266	28	16.8	29	85	8	603	32	30	16	20	1.95
34790--35295	57	8.9	57	86	7	583	32	29	16	20	1.95
35307--35576	49	5.6	49	81	6	293	23	25	17	32	1.96
35356--35621	49	5.3	49	79	4	255	22	26	17	33	1.96
35307--35624	150	2.2	143	82	7	379	23	26	16	33	1.96
35307--35576	101	2.8	99	81	7	286	23	25	17	32	1.96
36402--36446	13	3.5	13	84	3	65	31	13	15	40	1.86
36382--36511	33	4.0	33	66	15	99	32	13	13	40	1.83
39677--40031	154	2.3	153	80	6	407	36	20	16	25	1.94
40562--40959	161	2.5	162	87	0	591	40	14	10	34	1.79
41767--41824	20	2.9	20	97	0	107	36	6	10	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41788--41922	51	2.7	51	90	1	209	28	14	11	45	1.80
55474--55525	16	3.2	16	77	2	50	82	11	0	5	0.82
56715--56796	14	6.3	12	72	18	58	35	12	18	34	1.88
56811--57536	28	25.6	28	84	6	815	30	29	16	23	1.96
57624--57732	49	2.3	48	84	6	134	21	26	19	33	1.97
58742--58779	20	1.9	20	94	0	67	31	10	10	47	1.72
58763--58842	33	2.5	31	86	9	117	25	18	12	43	1.85
63150--63175	13	2.0	13	100	0	52	38	15	15	30	1.88
63132--63195	32	2.0	33	87	3	94	40	17	14	28	1.88
67247--67277	15	2.1	15	93	0	53	48	16	22	12	1.80
69348--69385	13	2.9	13	88	0	58	36	18	13	31	1.89
71954--71979	13	2.0	13	100	0	52	38	15	15	30	1.88
71936--71999	32	2.0	33	87	3	94	40	17	14	28	1.88
73230--73756	165	3.2	160	76	13	460	50	10	10	29	1.68
73479--73781	164	1.9	163	88	6	461	55	7	8	27	1.58
73236--73781	164	3.3	165	77	9	454	51	10	9	28	1.67
80163--80236	36	2.1	36	97	0	139	48	5	13	32	1.65
82498--82568	35	2.0	35	88	0	106	40	21	12	25	1.88
82399--82562	79	2.1	77	78	4	177	38	17	14	29	1.89

Tables:   1

The End!