genome.fa.s2329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2329
Parameters: 2 7 7 80 10 50 1000
Length:  113579

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2859--2885	2	13.5	2	100	0	54	48	0	0	51	1.00
5377--5416	20	2.0	20	86	13	57	37	0	5	57	1.21
6060--6098	19	2.0	21	85	10	55	53	7	0	38	1.30
10534--10589	20	2.8	20	71	10	53	60	0	0	39	0.97
10574--10607	12	2.8	12	86	0	50	32	0	2	64	1.08
11201--11232	15	2.1	16	94	5	57	56	0	0	43	0.99
11989--12104	59	2.0	58	86	8	164	56	0	6	37	1.27
12467--12505	20	2.0	20	100	0	78	51	0	0	48	1.00
12623--12652	2	15.0	2	100	0	60	50	0	0	50	1.00
15854--15904	24	2.2	23	82	3	57	49	1	3	45	1.32
17540--17594	22	2.4	22	74	17	58	50	0	0	49	1.00
17844--17896	23	2.3	23	93	0	88	30	7	15	47	1.73
18339--18844	267	1.9	266	93	0	868	32	13	29	24	1.93
22699--22737	20	2.0	20	94	0	69	51	0	2	46	1.14
25580--25618	19	2.1	19	85	4	53	23	20	20	35	1.96
27293--27393	27	4.0	24	75	12	76	46	19	9	23	1.80
27315--27393	27	2.9	27	81	7	106	45	21	10	22	1.81
28820--28870	23	2.2	22	86	10	66	49	1	3	45	1.32
28820--28864	23	1.9	24	90	4	74	53	0	4	42	1.21
30448--30474	7	3.9	7	100	0	54	59	11	0	29	1.32
32749--32887	29	4.8	28	73	6	116	41	5	18	33	1.74
33072--33506	156	2.8	151	79	7	421	27	14	14	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35391--35457	20	3.3	20	72	2	62	46	0	0	53	1.00
35392--35475	41	2.1	40	82	6	98	42	1	1	54	1.15
35666--35789	19	6.8	18	69	23	55	41	0	0	58	1.04
35673--35730	19	3.4	18	73	26	63	36	0	0	63	0.94
35678--35718	13	3.2	13	86	3	57	34	0	0	65	0.93
37255--37293	17	2.4	17	86	4	62	43	0	10	46	1.37
38677--38726	23	2.2	23	88	0	73	40	6	14	40	1.70
38688--38737	23	2.2	23	100	0	100	32	6	20	42	1.76
39467--39501	18	1.9	18	88	11	54	20	14	0	65	1.26
39598--39641	18	2.4	18	88	0	61	45	2	6	45	1.42
40082--40310	69	3.3	69	70	17	222	35	5	9	50	1.57
40034--40311	137	2.0	136	97	1	538	35	5	7	50	1.54
43368--44027	232	2.8	230	81	7	690	46	11	14	27	1.78
44043--44074	15	2.1	16	88	11	50	50	3	0	46	1.17
45481--47969	231	10.8	230	87	4	3159	46	11	14	27	1.80
49616--49650	16	2.2	16	90	10	54	60	2	0	37	1.12
49795--49912	15	7.8	15	69	20	68	34	0	3	61	1.12
49794--49875	31	2.7	30	87	9	105	32	0	2	64	1.07
49818--49874	11	5.4	11	75	8	55	36	0	1	61	1.07
49922--49974	10	5.1	10	75	8	52	60	0	0	39	0.97
49910--49974	22	3.0	22	80	6	62	60	0	0	40	0.97
49908--49973	32	2.1	32	85	5	89	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49949--49991	22	2.0	22	90	0	68	53	0	0	46	1.00
49996--50048	17	3.3	17	74	15	58	56	0	3	39	1.17
49979--50032	22	2.3	23	81	12	65	53	1	1	42	1.22
50746--50849	54	1.9	54	86	3	147	44	4	0	50	1.23
51780--51828	22	2.2	22	78	7	55	51	4	24	20	1.65
52422--52510	39	2.3	39	96	0	160	32	6	39	21	1.79
52473--52526	27	2.0	27	89	7	83	42	3	38	14	1.64
62264--62306	2	22.0	2	90	4	70	51	0	0	48	1.00
63188--63221	17	2.0	17	88	0	50	64	5	5	23	1.38
65060--65097	2	19.0	2	100	0	76	50	0	0	50	1.00
65587--65624	17	2.0	20	85	14	55	34	0	10	55	1.34
65583--65671	30	3.0	29	74	6	81	29	6	10	53	1.60
66065--66107	20	2.2	20	83	4	52	16	4	11	67	1.38
66602--66650	23	2.1	24	81	11	57	30	0	4	65	1.11
68782--68817	2	18.5	2	94	5	65	50	0	0	50	1.00
76759--77066	154	2.0	154	80	4	343	17	30	10	41	1.83
79086--79301	34	6.4	34	89	1	301	25	7	26	40	1.83
79086--79303	67	3.2	66	88	2	310	24	7	27	40	1.82
79086--79303	101	2.2	101	91	4	359	24	7	27	40	1.82
83712--83929	34	6.5	34	88	1	296	25	7	26	40	1.83
83712--83931	67	3.3	66	87	2	305	25	7	26	40	1.82
83712--83931	101	2.2	101	91	4	363	25	7	26	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86138--86174	2	18.5	2	100	0	74	51	0	0	48	1.00
92291--92328	16	2.2	17	86	9	51	44	2	10	42	1.52
95660--95880	34	6.5	33	82	9	257	40	26	7	25	1.82
95662--95880	68	3.2	67	84	3	287	40	26	7	25	1.82
95660--95880	102	2.2	101	87	1	343	40	26	7	25	1.82
100287--100505	34	6.5	33	82	9	262	40	26	7	24	1.82
100289--100505	68	3.2	67	85	3	292	40	26	7	24	1.82
100287--100505	102	2.2	101	89	1	348	40	26	7	24	1.82
101915--101943	2	14.5	2	100	0	58	51	0	0	48	1.00
102139--102179	17	2.5	17	88	4	66	53	0	0	46	1.00
102168--102220	26	2.1	25	82	10	63	41	0	0	58	0.98
104053--104104	25	2.0	26	85	14	72	61	0	0	38	0.96
105215--105270	30	1.9	29	85	7	78	57	0	7	35	1.26
106128--106172	10	4.2	11	81	16	58	60	0	0	40	0.97
110122--110237	38	3.1	38	89	0	169	27	31	14	25	1.95

Tables:   1

The End!