genome.fa.s233.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold233
Parameters: 2 7 7 80 10 50 1000
Length:  130372

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--300	52	4.7	51	76	13	229	33	21	25	20	1.97
126--299	93	1.9	94	85	7	246	31	21	26	21	1.98
321--472	28	5.3	28	85	5	182	19	16	27	36	1.93
511--594	28	2.9	28	80	3	78	26	17	30	25	1.97
1398--2009	304	2.0	307	97	2	1162	23	15	25	35	1.94
2489--2544	1	56.0	1	81	0	67	1	0	7	91	0.50
2464--2549	8	10.9	8	82	10	90	1	0	15	83	0.70
16331--16459	52	2.5	52	97	0	240	29	17	17	34	1.94
16331--16479	52	2.9	52	91	6	232	31	16	18	33	1.93
16468--16492	13	1.9	13	100	0	50	36	16	16	32	1.90
16533--16599	33	2.0	33	88	0	98	40	13	11	34	1.81
16555--16579	13	1.9	13	100	0	50	32	16	16	36	1.90
16936--16964	13	2.1	14	93	6	51	31	20	0	48	1.50
20341--20591	37	6.8	37	78	7	210	23	14	23	38	1.92
20341--20592	71	3.4	75	79	8	243	23	14	23	38	1.92
24927--24981	20	2.7	21	88	2	76	45	14	14	25	1.83
25617--25699	32	2.7	31	85	5	114	37	10	26	25	1.89
27179--27204	2	13.0	2	100	0	52	50	0	0	50	1.00
27291--27437	74	2.0	73	88	4	215	31	9	30	28	1.89
34716--34740	13	1.9	13	100	0	50	32	16	16	36	1.90
34809--34912	32	3.3	32	75	21	110	29	22	10	37	1.88
34903--34927	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36010--36075	9	7.6	9	76	10	57	13	1	7	77	1.05
36034--36081	18	2.7	17	81	9	60	14	2	8	75	1.13
37416--37489	28	2.6	28	86	0	94	27	24	27	21	1.99
37316--37542	51	4.4	51	64	17	133	33	14	24	27	1.95
50791--51118	156	2.1	157	81	5	378	32	15	25	26	1.95
50783--51114	78	4.2	78	80	8	318	32	15	26	26	1.95
51060--51115	28	1.9	30	89	7	89	32	19	28	19	1.97
51061--51147	29	3.0	28	81	8	86	33	17	27	21	1.96
51098--51272	78	2.2	79	82	8	198	32	14	24	28	1.95
51098--51273	79	2.2	79	81	9	200	32	14	24	27	1.95
54950--55082	30	4.3	31	76	8	128	21	16	29	32	1.95
55098--55174	31	2.6	30	85	6	95	19	20	27	32	1.97
55121--55844	28	25.4	28	78	4	547	24	18	29	28	1.98
55985--56164	61	3.0	61	88	0	252	6	19	28	45	1.75
56866--56895	13	2.2	14	94	5	53	23	0	3	73	0.98
57400--58400	42	23.7	43	74	10	457	35	19	28	17	1.94
57359--58644	84	15.2	84	78	3	931	35	19	27	17	1.94
57399--58671	126	10.1	125	74	7	708	35	19	28	17	1.94
57359--58644	42	30.5	42	70	11	450	35	19	27	17	1.94
58537--58673	42	3.3	41	81	6	116	35	21	27	16	1.95
65223--65348	52	2.4	52	85	0	180	29	20	16	33	1.95
65357--65381	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65426--65477	13	3.5	13	73	26	50	36	17	13	32	1.89
65426--65496	32	2.2	32	92	0	115	39	18	11	30	1.86
65430--65498	19	4.1	17	70	24	56	42	17	10	30	1.82
76525--77076	42	13.2	42	84	1	667	14	29	17	38	1.89
77058--77095	19	2.0	19	89	0	58	26	26	15	31	1.96
77077--77295	42	5.3	41	72	6	147	15	30	16	36	1.91
78490--78521	16	2.0	16	93	0	55	78	3	0	18	0.89
79996--80046	22	2.4	21	80	3	57	5	13	9	70	1.32
80913--80960	23	2.1	23	100	0	96	43	4	20	31	1.71
85108--85162	16	3.2	17	80	19	62	16	3	10	69	1.32
85117--85170	25	2.2	25	89	0	81	12	3	11	72	1.25
85086--85171	9	9.8	9	70	17	56	17	2	8	72	1.20
85621--85733	50	2.2	51	81	4	122	34	7	25	31	1.85
85670--86507	79	10.6	78	80	6	780	34	11	24	28	1.91
85670--86507	237	3.5	236	84	3	1017	34	11	24	28	1.91
89836--90088	37	6.8	37	72	5	161	26	18	19	35	1.95
89878--90087	74	2.8	72	76	8	197	27	17	20	34	1.95
91524--91572	26	1.9	26	87	4	73	32	18	28	20	1.96
93858--93909	20	2.6	20	96	0	95	36	11	15	36	1.84
94306--94377	20	3.6	20	83	3	83	38	15	15	30	1.88
95787--95812	13	2.0	13	100	0	52	30	15	15	38	1.88
96509--96552	21	2.1	21	83	8	54	25	31	4	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98358--98383	13	2.0	13	100	0	52	38	15	15	30	1.88
100456--100486	15	2.1	15	93	0	53	12	22	16	48	1.80
104539--104564	13	2.0	13	100	0	52	30	15	15	38	1.88
104603--104678	20	3.8	20	79	8	73	28	15	14	40	1.87
116626--116668	3	14.3	3	100	0	86	34	0	0	65	0.93
117626--117738	55	2.1	55	94	0	199	42	10	9	37	1.73
117999--118039	21	1.9	21	90	5	64	60	0	0	39	0.96
119190--119246	15	3.9	15	76	21	59	49	0	1	49	1.11
119192--119261	28	2.7	26	84	8	81	50	1	1	47	1.19
119203--119261	24	2.2	28	85	11	81	52	1	0	45	1.10

Tables:   1

The End!