Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2330

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12549
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:8706 original size:21 final size:18

Alignment explanation


    Indices: 8669--8708  Score: 53
    Period size: 21  Copynumber: 2.1  Consensus size: 18

       8659 AAGTTATATC

                              
       8669 AATAATTTATTTTTTAAA
          1 AATAATTTATTTTTTAAA

                                 
       8687 AATAATGTTATATATTTTAAA
          1 AATAAT-TTAT-T-TTTTAAA

             
       8708 A
          1 A

       8709 TCTACTTATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    6  0.32
  19    4  0.21
  20    1  0.05
  21    8  0.42

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (18 bp):   
AATAATTTATTTTTTAAA
Done.