Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2335
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38564
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Found at i:987 original size:80 final size:79
Alignment explanation
Indices: 782--987 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 79
772 GAGATAGTAA
* * *
782 CGGGGGTTGGAGTAT-CCCTCGAAAATAACGGGGTTGGAGTATCCTCGA-TGTGAAAAATCGATG
1 CGGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG
845 ATTTGAAAATAAAC
66 ATTTGAAAATAAAC
* *** * *
859 C-GGGGTTGGAATATCCCCTCGGGGATAACGGGGTTGGAGTATCTCCGATTATGAGAAATCAAT-
1 CGGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG
* *
922 ATTTTAGGAATAAAGC
66 ATTTGA-AAATAAA-C
*
938 CGGGGGTTGGAGTATCCCCTCGAAAATGACGGGGTTGGAGTATCCCCGAT
1 CGGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
988 GATTAACGAG
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
76 12 0.11
77 34 0.32
78 17 0.16
79 2 0.02
80 42 0.39
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (79 bp):
CGGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG
ATTTGAAAATAAAC
Found at i:1094 original size:51 final size:52
Alignment explanation
Indices: 1026--1157 Score: 205
Period size: 52 Copynumber: 2.6 Consensus size: 52
1016 AAAAAAATGA
* *
1026 GGTTGGAGTATCTCCGATTGTGAAAAATTAGTG-TTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGGAAATAAAATCGG
**
1077 GGTTGGAGTATCCCCGATTATGGGAAATTAGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGGAAATAAAATCGG
1129 GGTTGGAGTA-CCTCCGATTATGAAAAATT
1 GGTTGGAGTATCC-CCGATTATGAAAAATT
1158 GAGAAACTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
51 31 0.42
52 42 0.58
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (52 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGGAAATAAAATCGG
Found at i:3506 original size:13 final size:13
Alignment explanation
Indices: 3488--3513 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3478 CAAAGAATAG
3488 ATGTATCGATACA
1 ATGTATCGATACA
3501 ATGTATCGATACA
1 ATGTATCGATACA
3514 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3510 original size:34 final size:33
Alignment explanation
Indices: 3467--3533 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
3457 AACTTCATAG
*
3467 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
3501 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
3534 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:3589 original size:19 final size:19
Alignment explanation
Indices: 3565--3650 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
3555 AGCGATACAT
3565 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
3584 TGTATCGATAC---A-TT-
1 TGTATCGATACAAAACTTA
*
3598 T-TATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
3616 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACT-TA
3637 TGTATCGATACAAA
1 TGTATCGATACAAA
3651 GTATTGGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
13 9 0.17
14 1 0.02
15 2 0.04
16 2 0.04
17 2 0.04
18 1 0.02
19 21 0.39
20 3 0.06
21 13 0.24
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:3603 original size:32 final size:32
Alignment explanation
Indices: 3557--3630 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
3547 AGCTTCCTAG
*
3557 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTTTATCGATACAAAACTTATGTAT
*
3589 CGATACATTTTATCGATACAACACTTATGTAT
1 CGATACATTTTATCGATACAAAACTTATGTAT
3621 CGATACATTT
1 CGATACATTT
3631 ACTGAATGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (32 bp):
CGATACATTTTATCGATACAAAACTTATGTAT
Found at i:6803 original size:14 final size:15
Alignment explanation
Indices: 6766--6805 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
6756 AAATAAATAA
6766 ATAAATATAATAACAT
1 ATAAATAT-ATAACAT
6782 -T-AATATATAA-AT
1 ATAAATATATAACAT
6794 ATAAATATATAA
1 ATAAATATATAA
6806 TTTATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.09
13 5 0.23
14 14 0.64
15 1 0.05
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAAATATATAACAT
Found at i:7131 original size:15 final size:14
Alignment explanation
Indices: 7076--7131 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
7066 AATATTATTA
* *
7076 TTAATTTAATAAAT
1 TTAATATAATATAT
* *
7090 ATAATATAATATGT
1 TTAATATAATATAT
*
7104 TTAA-ATAAGATAT
1 TTAATATAATATAT
7117 TTAATATACATATAT
1 TTAATATA-ATATAT
7132 ATATATTATA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
13 11 0.34
14 16 0.50
15 5 0.16
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.45
Consensus pattern (14 bp):
TTAATATAATATAT
Found at i:15281 original size:18 final size:18
Alignment explanation
Indices: 15254--15291 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15244 TATAAATTTA
*
15254 GAACACATAAGTAAATAT
1 GAACACATAACTAAATAT
*
15272 GAACATATAACTAAATAT
1 GAACACATAACTAAATAT
15290 GA
1 GA
15292 CAATCCATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.24
Consensus pattern (18 bp):
GAACACATAACTAAATAT
Found at i:20644 original size:106 final size:105
Alignment explanation
Indices: 20458--20651 Score: 280
Period size: 106 Copynumber: 1.8 Consensus size: 105
20448 TGTCAATATG
* * *
20458 CAATATTTAATGAATTAAAAGACCTTACAACTTCATATATGTCATGTATGTTGGCAACATGTCAT
1 CAATATTTAATGAATTAAAAGACCTTACAACTTCATAAATATCATGTATGTTGACAACATGTCAT
*
20523 ACTTAATTTATCATATAATAATTAGGTGGTAGATTTTTTT
66 ACTTAATTTACCATATAATAATTAGGTGGTAGATTTTTTT
* * * ** * *
20563 CAATATTTAATGAAATTGAAAGACGTTACAATTTCATAAATATCATGTATGTTGATGACGTGTTA
1 CAATATTTAATG-AATTAAAAGACCTTACAACTTCATAAATATCATGTATGTTGACAACATGTCA
20628 TACTTAATTTACCATATAATAATT
65 TACTTAATTTACCATATAATAATT
20652 GAAAAATTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
105 12 0.16
106 65 0.84
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (105 bp):
CAATATTTAATGAATTAAAAGACCTTACAACTTCATAAATATCATGTATGTTGACAACATGTCAT
ACTTAATTTACCATATAATAATTAGGTGGTAGATTTTTTT
Found at i:20815 original size:22 final size:20
Alignment explanation
Indices: 20787--20840 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 20
20777 TTTGTTCTTT
20787 TATATAAATATAAACACATTAA
1 TATATAAATATAAA-ACA-TAA
20809 TATATAAATAT-AAACATAA
1 TATATAAATATAAAACATAA
20828 -ATATAAATATAAA
1 TATATAAATATAAA
20841 TGTATAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.32
19 5 0.16
20 3 0.10
21 2 0.06
22 11 0.35
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (20 bp):
TATATAAATATAAAACATAA
Found at i:20829 original size:12 final size:12
Alignment explanation
Indices: 20812--20841 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20802 ACATTAATAT
20812 ATAAATATAAAC
1 ATAAATATAAAC
*
20824 ATAAATATAAAT
1 ATAAATATAAAC
20836 ATAAAT
1 ATAAAT
20842 GTATAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (12 bp):
ATAAATATAAAC
Found at i:21601 original size:3 final size:3
Alignment explanation
Indices: 21593--21636 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
21583 CCCTTAAGTG
21593 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
21637 AAACTTTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:24355 original size:117 final size:117
Alignment explanation
Indices: 24172--24406 Score: 434
Period size: 117 Copynumber: 2.0 Consensus size: 117
24162 TTCATAAAAA
*
24172 TAAAAATCGTTCCTAAAAATTTAAAAGATAAAAAATTATTTTCTAAAAACTATGTCTTTAAAAAG
1 TAAAAATCGTCCCTAAAAATTTAAAAGATAAAAAATTATTTTCTAAAAACTATGTCTTTAAAAAG
24237 TTTTAGAGACGACATTTATCTCCAATACAATTAAATTCAAGATAGAAAAGAT
66 TTTTAGAGACGACATTTATCTCCAATACAATTAAATTCAAGATAGAAAAGAT
* * *
24289 TAAAAATCGTCCCTAAAAGTTTAAAAGATAAAAAATTATTTTTTAAAATCTATGTCTTTAAAAAG
1 TAAAAATCGTCCCTAAAAATTTAAAAGATAAAAAATTATTTTCTAAAAACTATGTCTTTAAAAAG
24354 TTTTAGAGACGACATTTATCTCCAATACAATTAAATTCAAGATAGAAAAGAT
66 TTTTAGAGACGACATTTATCTCCAATACAATTAAATTCAAGATAGAAAAGAT
24406 T
1 T
24407 TTTTCTATCA
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 114 1.00
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (117 bp):
TAAAAATCGTCCCTAAAAATTTAAAAGATAAAAAATTATTTTCTAAAAACTATGTCTTTAAAAAG
TTTTAGAGACGACATTTATCTCCAATACAATTAAATTCAAGATAGAAAAGAT
Found at i:25356 original size:18 final size:18
Alignment explanation
Indices: 25329--25366 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
25319 TATAAATTTA
25329 GAACACATAAATAAATAT
1 GAACACATAAATAAATAT
* *
25347 GAACATATAACTAAATAT
1 GAACACATAAATAAATAT
25365 GA
1 GA
25367 CAATCCATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.24
Consensus pattern (18 bp):
GAACACATAAATAAATAT
Found at i:28298 original size:20 final size:20
Alignment explanation
Indices: 28273--28316 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
28263 GTAAGGTCAT
28273 AAATTATTTAATTTAAGACC
1 AAATTATTTAATTTAAGACC
28293 AAATTATTTAATTTAAGACC
1 AAATTATTTAATTTAAGACC
28313 AAAT
1 AAAT
28317 CTAATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (20 bp):
AAATTATTTAATTTAAGACC
Found at i:31687 original size:7 final size:7
Alignment explanation
Indices: 31677--31717 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
31667 CTTTAGCCTG
*
31677 TTTGCTT
1 TTTGTTT
31684 TTTGTTT
1 TTTGTTT
31691 TTTGTTT
1 TTTGTTT
31698 TTTG-TT
1 TTTGTTT
31704 TTTGTTT
1 TTTGTTT
31711 TTTGTTT
1 TTTGTTT
31718 CTTTTTTGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (7 bp):
TTTGTTT
Found at i:31707 original size:20 final size:21
Alignment explanation
Indices: 31678--31717 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
31668 TTTAGCCTGT
31678 TTGCTTTTTGTTTTTTGTTTT
1 TTGCTTTTTGTTTTTTGTTTT
31699 TTG-TTTTTGTTTTTTGTTT
1 TTGCTTTTTGTTTTTTGTTT
31718 CTTTTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (21 bp):
TTGCTTTTTGTTTTTTGTTTT
Found at i:31724 original size:13 final size:13
Alignment explanation
Indices: 31677--31717 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
31667 CTTTAGCCTG
*
31677 TTTGCTTTTTGTTT
1 TTTGTTTTTTG-TT
31691 TTTGTTTTTTGTT
1 TTTGTTTTTTGTT
31704 TTTGTTTTTTGTT
1 TTTGTTTTTTGTT
31717 T
1 T
31718 CTTTTTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (13 bp):
TTTGTTTTTTGTT
Found at i:32622 original size:80 final size:79
Alignment explanation
Indices: 32415--32622 Score: 274
Period size: 79 Copynumber: 2.6 Consensus size: 79
32405 GAGATAGTAA
* * *
32415 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGA
32480 TTTGAAAATAAAAC
66 TTTGAAAATAAAAC
* *** * *
32494 CGGGGTTGGAATATCCCCTCGGGGATAACGGGGTTGGAGTATCTCCGATTATGAGAAATCAAT-A
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGA
* * *
32558 TTTTAGGAATAAAGC
66 TTTGA-AAATAAAAC
*
32573 CGGGGGTTGGAGTATCCCCTCGAAAATGACGGGGTTGGAGTATCCCCGAT
1 C-GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
32623 GATTAACGAG
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
78 5 0.05
79 62 0.57
80 42 0.39
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGA
TTTGAAAATAAAAC
Found at i:32730 original size:52 final size:52
Alignment explanation
Indices: 32661--32793 Score: 214
Period size: 52 Copynumber: 2.6 Consensus size: 52
32651 AAAAAAATGA
* *
32661 GGTTGGAGTATCTCCGATTGTGAAAAATTAGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGGAAATAAAATCGG
**
32713 GGTTGGAGTATCCCCGATTATGGGAAATTAGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGGAAATAAAATCGG
32765 GGTTGGAGTA-CCTCCGATTATGAAAAATT
1 GGTTGGAGTATCC-CCGATTATGAAAAATT
32794 GAGAAACTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
51 2 0.03
52 72 0.97
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (52 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGGAAATAAAATCGG
Found at i:35146 original size:13 final size:13
Alignment explanation
Indices: 35128--35153 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35118 CAAAGAATAG
35128 ATGTATCGATACA
1 ATGTATCGATACA
35141 ATGTATCGATACA
1 ATGTATCGATACA
35154 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:35150 original size:34 final size:33
Alignment explanation
Indices: 35107--35173 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
35097 AACTTCATAG
*
35107 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
35141 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
35174 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:35229 original size:19 final size:18
Alignment explanation
Indices: 35205--35267 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
35195 AGCGATACAT
35205 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
35224 TGTATCGATAC--A-TT-
1 TGTATCGATACAAACTTA
35238 T-TATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
35256 TGTATCGATACA
1 TGTATCGATACA
35268 TTTACGGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
15 2 0.05
16 2 0.05
17 2 0.05
18 1 0.03
19 21 0.55
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:35243 original size:32 final size:32
Alignment explanation
Indices: 35197--35270 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
35187 AGCTTCCTAG
*
35197 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTTTATCGATACAAAACTTATGTAT
*
35229 CGATACATTTTATCGATACAACACTTATGTAT
1 CGATACATTTTATCGATACAAAACTTATGTAT
35261 CGATACATTT
1 CGATACATTT
35271 ACGGAATGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (32 bp):
CGATACATTTTATCGATACAAAACTTATGTAT
Done.