Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2339
Parameters: 2 7 7 80 10 50 1000
Length:  68245

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1269--1339
18
3.6
18
72
20
52
12
42
1
43
1.51
1254--1372
42
2.8
42
88
0
175
10
45
1
42
1.47
1254--1363
21
5.1
23
70
22
78
10
46
1
40
1.50
1282--1342
9
7.1
9
74
10
65
13
42
1
42
1.53
5822--6278
165
2.8
166
86
2
643
33
12
12
40
1.82
9456--9531
12
6.9
11
75
15
52
39
2
48
9
1.49
9455--9540
24
3.8
24
72
17
85
41
2
45
10
1.51
9446--9564
42
2.8
42
92
0
193
42
2
46
8
1.47
28068--28186
42
2.8
42
92
0
193
8
46
2
42
1.47
28101--28176
12
6.9
11
75
15
52
9
48
2
39
1.49
28092--28177
24
3.8
24
72
17
85
10
45
2
41
1.51
28083--28153
18
3.6
18
69
20
52
9
43
2
43
1.52
33174--33263
29
3.1
28
81
7
92
24
14
30
31
1.95
33224--33280
29
2.0
29
96
0
105
26
14
26
33
1.94
33384--33514
29
4.5
29
82
4
133
28
16
29
25
1.96
33473--33742
31
8.3
30
75
11
155
26
18
24
30
1.98
33551--33701
62
2.4
64
81
6
182
22
21
24
31
1.99
33485--33663
93
1.9
94
82
5
225
24
21
24
30
1.99
33647--33774
36
3.6
35
81
9
134
25
16
25
32
1.96
42849--42919
12
6.5
11
76
15
51
39
2
47
9
1.51
42845--42952
42
2.6
42
93
0
189
40
2
47
9
1.50
57499--57617
42
2.8
42
92
0
193
8
46
2
42
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57532--57607
12
6.9
11
75
15
52
9
48
2
39
1.49
57523--57608
24
3.8
24
72
17
85
10
45
2
41
1.51
57514--57584
18
3.6
18
69
20
52
9
43
2
43
1.52
65599--65709
42
2.6
42
89
0
168
10
45
0
42
1.45
65637--65708
12
6.5
11
77
19
71
12
47
0
40
1.41
67338--67417
30
2.7
30
90
3
117
43
5
43
7
1.54
67353--67392
21
1.9
21
89
0
62
45
2
42
10
1.51

Tables:   1

The End!