Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2341
Parameters: 2 7 7 80 10 50 1000
Length:  61747

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
641--670
15
1.9
16
93
6
53
6
13
3
76
1.11
8286--8347
23
2.7
23
89
0
88
20
12
20
45
1.84
9438--9463
2
13.0
2
100
0
52
50
0
0
50
1.00
12942--12972
2
15.5
2
100
0
62
51
0
0
48
1.00
17401--17436
18
1.9
19
88
5
56
63
11
0
25
1.27
25213--25258
23
2.0
23
100
0
92
30
17
17
34
1.93
25929--25960
13
2.5
13
94
0
55
75
3
9
12
1.16
26442--26611
34
5.0
34
93
0
295
22
0
36
41
1.54
26578--26633
22
2.5
22
97
0
103
19
0
41
39
1.52
26551--26662
56
2.0
56
96
0
206
21
0
39
39
1.54
26442--26662
68
3.4
65
87
8
289
22
0
36
41
1.54
31338--31507
34
5.0
34
94
0
304
21
0
37
41
1.54
31379--31558
56
3.0
56
63
25
123
21
0
38
40
1.54
31474--31529
22
2.5
22
97
0
103
19
0
41
39
1.52
31338--31558
68
3.4
65
88
8
298
21
0
37
41
1.54
31338--31558
102
2.3
100
87
9
300
21
0
37
41
1.54
35952--35985
10
3.4
10
83
0
50
35
8
0
55
1.31
36102--36254
77
2.0
75
87
2
216
39
11
4
43
1.62
36178--36429
93
2.7
94
82
6
300
44
7
4
44
1.52
36817--36841
2
12.5
2
100
0
50
48
0
0
52
1.00
37675--37722
13
3.5
13
76
18
53
29
2
2
66
1.14
39725--39774
21
2.2
22
79
17
57
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39732--39774
21
2.0
23
86
9
63
48
0
0
51
1.00
39764--39813
22
2.3
21
80
16
57
44
0
2
54
1.11
39764--39824
22
2.8
21
76
16
52
42
0
1
55
1.09
40744--40785
22
1.9
22
90
0
66
45
0
0
54
0.99
40931--41056
24
5.0
24
72
17
87
44
1
0
53
1.15
40907--41057
25
5.9
24
71
18
83
41
2
0
54
1.19
41036--41077
15
2.9
15
85
3
50
47
4
2
45
1.36
41527--41557
16
1.9
16
93
0
53
22
3
6
67
1.28
41654--41699
13
3.3
13
80
16
56
28
0
0
71
0.86
41646--41708
29
2.2
29
86
8
85
30
1
1
66
1.10
41651--41692
16
2.5
18
88
11
63
30
0
0
69
0.89
48801--48846
3
15.7
3
95
4
85
30
0
0
69
0.89
48801--48863
9
7.2
8
89
5
63
28
0
1
69
0.97
51680--51719
2
20.0
2
100
0
80
50
0
0
50
1.00
52757--52793
3
12.3
3
100
0
74
32
0
0
67
0.91
53649--53763
37
3.1
35
74
20
99
34
20
18
26
1.95
53740--53873
31
4.3
31
81
3
162
29
23
17
29
1.97
53733--53885
62
2.5
62
84
2
191
32
22
16
28
1.96
57504--57582
32
2.5
32
87
0
122
40
7
15
36
1.75
58570--58594
13
1.9
13
100
0
50
40
0
0
60
0.97
58905--58937
3
11.0
3
100
0
66
33
0
0
66
0.92
60001--60041
16
2.5
17
84
8
57
36
0
2
60
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60017--60059
18
2.3
18
80
8
50
34
2
4
58
1.32
60994--61035
21
2.0
21
90
9
68
35
4
0
59
1.19

Tables:   1

The End!